BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia22_contig00013380
         (1893 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009778087.1| PREDICTED: tRNA pseudouridine synthase A, mi...   675   0.0  
ref|XP_009589249.1| PREDICTED: tRNA pseudouridine synthase A, mi...   670   0.0  
ref|XP_003519139.1| PREDICTED: tRNA pseudouridine synthase A, mi...   657   0.0  
ref|XP_012073705.1| PREDICTED: tRNA pseudouridine synthase A, mi...   656   0.0  
gb|KHN42806.1| tRNA pseudouridine synthase 1 [Glycine soja]           655   0.0  
ref|XP_010064573.1| PREDICTED: tRNA pseudouridine synthase A, mi...   651   0.0  
ref|XP_007154900.1| hypothetical protein PHAVU_003G157400g [Phas...   651   0.0  
ref|XP_007010013.1| Pseudouridine synthase [Theobroma cacao] gi|...   649   0.0  
ref|XP_008452911.1| PREDICTED: tRNA pseudouridine synthase A, mi...   648   0.0  
ref|XP_011034929.1| PREDICTED: tRNA pseudouridine synthase A, mi...   645   0.0  
ref|XP_002307759.2| hypothetical protein POPTR_0005s26830g [Popu...   645   0.0  
ref|XP_004145528.1| PREDICTED: tRNA pseudouridine synthase A, mi...   645   0.0  
ref|XP_006575306.1| PREDICTED: tRNA pseudouridine synthase A, mi...   644   0.0  
ref|XP_011003107.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudou...   641   0.0  
ref|XP_008221186.1| PREDICTED: tRNA pseudouridine synthase A, mi...   639   e-180
ref|XP_002510619.1| pseudouridylate synthase, putative [Ricinus ...   638   e-180
ref|XP_007154901.1| hypothetical protein PHAVU_003G157400g [Phas...   638   e-180
ref|XP_006342092.1| PREDICTED: tRNA pseudouridine synthase A, mi...   635   e-179
ref|XP_010266077.1| PREDICTED: tRNA pseudouridine synthase A, mi...   634   e-179
ref|XP_006435279.1| hypothetical protein CICLE_v10000838mg [Citr...   633   e-178

>ref|XP_009778087.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Nicotiana
            sylvestris]
          Length = 596

 Score =  675 bits (1742), Expect = 0.0
 Identities = 357/530 (67%), Positives = 405/530 (76%), Gaps = 9/530 (1%)
 Frame = -2

Query: 1790 PQEEEEQPNSKKLKMSTTTSDDDENYDKAPAAADADGTILPRKPRYKRRKIAIFFAYCGV 1611
            P    E+P  KK KMSTTTSDD+E    A AA   DG    RKPRYKRRKIAIFFAYCGV
Sbjct: 7    PLSTIEEPEPKKQKMSTTTSDDEE---AATAAVAGDGPAPERKPRYKRRKIAIFFAYCGV 63

Query: 1610 GYQGMQKNPGAKTIEGDLEEALYHSGAVPEQDRGLPKRFDFARSARTDKGVSAVGQVVSG 1431
            GYQGMQKNPGAKTIEGDLEEALY +G VPE D+  P+R+D+ARSARTDKGVSAVGQVVSG
Sbjct: 64   GYQGMQKNPGAKTIEGDLEEALYQAGGVPEHDKCQPRRYDWARSARTDKGVSAVGQVVSG 123

Query: 1430 RFYVDPPGLIERLNSNLSPQIRIFGFKRVTGSFNAKKFCDRRRYVYLIPVFALDPSCHRD 1251
            RFYVDPPG I+RLNS LSPQIRIFGFKRVT +FNAKKFCDRRRYVY +PVFALDPS HRD
Sbjct: 124  RFYVDPPGFIDRLNSILSPQIRIFGFKRVTNAFNAKKFCDRRRYVYFVPVFALDPSSHRD 183

Query: 1250 RESVLASVGSENELVKCLECSERGRKVFGVMGNRNLHSKSDSEAVSVD-SSITLNTSSLL 1074
            RE+VLASVGS  ELVKCLECSERGRKVFGVMG R     + S  V  +  ++  N  + +
Sbjct: 184  RETVLASVGSGKELVKCLECSERGRKVFGVMGKRVYDPITKSVIVVAEPGNMPNNGDAQV 243

Query: 1073 ELENDEKIVVKTSEXXXXXXXXXXNADDNKFNTEPVKDLGDGAAQSDKIEEDKVDCGDVD 894
             L+N E  V               N + N   TE    + +GA+ S+K EE K +    D
Sbjct: 244  TLQNIESNV---------------NVNANDVITESNMVIENGASLSEKGEETKEEVEKGD 288

Query: 893  GNLKP----EKRSEFSYGEQERERFNRILKFYEGTHNFHNFTTRTKAEDPSAKRYIISFN 726
             N K      + S FSYGE+E+ERFNRILK+YEGTHNFHNFTTRTKA+DP+AKRYIISF 
Sbjct: 289  ENAKAIEEQVEESVFSYGEKEKERFNRILKYYEGTHNFHNFTTRTKADDPAAKRYIISFT 348

Query: 725  ANTTINVEGIEFVKCEVIGQSFMLHQIRKLIGLAVAIMRNIAPESLIEAAFEQNVNINVP 546
            ANT +NVEGIEFVKCEV+GQSFMLHQIRK+IGLAVAIMRN APESLI+ AF ++VNINVP
Sbjct: 349  ANTIVNVEGIEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNCAPESLIQTAFRRDVNINVP 408

Query: 545  MAPEVGLYLDECFFSSYNKKWKDSHEELSMKAYAEEAEDFKMKYIYSHIASTEHKDGVVA 366
            MAPEVGLYLDECFF+SYN KWKD+HEE+S+KAY E AE+FKMKYIYSHIASTEHKDG +A
Sbjct: 409  MAPEVGLYLDECFFTSYNSKWKDTHEEVSLKAYTEAAEEFKMKYIYSHIASTEHKDGTMA 468

Query: 365  LWLHSLNYRNYSDLRGL----NSGQSTETKCDEFVDNCQSTGVKHNEAVD 228
            LWLHSLNYRNY DLRG+    ++G S  +K  E V       VK+ E+ D
Sbjct: 469  LWLHSLNYRNYPDLRGVDNDNSAGASDGSKAIEAVVEAGIGAVKNGESTD 518


>ref|XP_009589249.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
            [Nicotiana tomentosiformis]
          Length = 596

 Score =  670 bits (1729), Expect = 0.0
 Identities = 352/530 (66%), Positives = 402/530 (75%), Gaps = 9/530 (1%)
 Frame = -2

Query: 1790 PQEEEEQPNSKKLKMSTTTSDDDENYDKAPAAADADGTILPRKPRYKRRKIAIFFAYCGV 1611
            P    ++P  KK KMSTTTSDD+E    A AA   DG    RKPRYKRRKIA+FFAYCGV
Sbjct: 7    PLSTIDEPQPKKQKMSTTTSDDEE---AATAAVAGDGPAPERKPRYKRRKIALFFAYCGV 63

Query: 1610 GYQGMQKNPGAKTIEGDLEEALYHSGAVPEQDRGLPKRFDFARSARTDKGVSAVGQVVSG 1431
            GYQGMQKNPGAKTIEGDLEEALY +G VP+ D+  P+R+D+ARSARTDKGVSAVGQVVSG
Sbjct: 64   GYQGMQKNPGAKTIEGDLEEALYQAGGVPDHDKCQPRRYDWARSARTDKGVSAVGQVVSG 123

Query: 1430 RFYVDPPGLIERLNSNLSPQIRIFGFKRVTGSFNAKKFCDRRRYVYLIPVFALDPSCHRD 1251
            RFYVDPPG I+RLNS LSPQIRIFGFKRVT +FNAKKFCDRRRYVY +PVFALDPS HRD
Sbjct: 124  RFYVDPPGFIDRLNSILSPQIRIFGFKRVTNAFNAKKFCDRRRYVYFVPVFALDPSSHRD 183

Query: 1250 RESVLASVGSENELVKCLECSERGRKVFGVMGNRNLHSKSDSEAVSVDSSITLNTSSL-L 1074
            RE+VLASVGS  ELVKCLECSERGRKVFGVMG R     + S  V  +     NT    L
Sbjct: 184  RETVLASVGSGKELVKCLECSERGRKVFGVMGKRVFDPITKSVIVVAEPCNMPNTGDAQL 243

Query: 1073 ELENDEKIVVKTSEXXXXXXXXXXNADDNKFNTEPVKDLGDGAAQSDKIEEDKVDCGDVD 894
             L+N E  V               N + N   TE    + +GA+ S+K+EE K +    D
Sbjct: 244  TLQNTESNV---------------NVNANDVITESNMVIENGASVSEKVEETKEEVEKGD 288

Query: 893  GNLKPEKR----SEFSYGEQERERFNRILKFYEGTHNFHNFTTRTKAEDPSAKRYIISFN 726
             N K  +     S F YGE+E+ERFNRILK+YEGTHNFHNFTTRTKA+DP+AKRYIISF 
Sbjct: 289  ENAKTVEEQVEESVFCYGEKEKERFNRILKYYEGTHNFHNFTTRTKADDPAAKRYIISFT 348

Query: 725  ANTTINVEGIEFVKCEVIGQSFMLHQIRKLIGLAVAIMRNIAPESLIEAAFEQNVNINVP 546
            ANT +NVE IEFVKCEV+GQSFMLHQIRK+IGLAVAIMRN APESLI+ AF ++VNINVP
Sbjct: 349  ANTIVNVESIEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNCAPESLIQTAFRRDVNINVP 408

Query: 545  MAPEVGLYLDECFFSSYNKKWKDSHEELSMKAYAEEAEDFKMKYIYSHIASTEHKDGVVA 366
            MAPEVGLYLDECFF+SYN KWKD+HEE+S+KAY+E AE+FKMKYIYSHIASTEHKDG +A
Sbjct: 409  MAPEVGLYLDECFFTSYNSKWKDTHEEVSLKAYSEAAEEFKMKYIYSHIASTEHKDGTMA 468

Query: 365  LWLHSLNYRNYSDLRGLNSGQST----ETKCDEFVDNCQSTGVKHNEAVD 228
            LWLHSLNYRNY DLR +++G S      +K  E V       VK+ E+ +
Sbjct: 469  LWLHSLNYRNYPDLRAVDNGNSAGAGDGSKAVEAVVEAGVGAVKNGESTE 518


>ref|XP_003519139.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like isoform
            X1 [Glycine max]
          Length = 548

 Score =  657 bits (1695), Expect = 0.0
 Identities = 348/517 (67%), Positives = 396/517 (76%), Gaps = 24/517 (4%)
 Frame = -2

Query: 1790 PQEEEEQPNSKKLKMSTTTSDDDENYDKAPAAADADGTILPRKPRYKRRKIAIFFAYCGV 1611
            P    E+P  KKLKMSTTTSDD+E            GT    K RYKRRK+AIFFAYCGV
Sbjct: 17   PPVSAEEPEPKKLKMSTTTSDDEET-----------GT----KKRYKRRKVAIFFAYCGV 61

Query: 1610 GYQGMQKNPGAKTIEGDLEEALYHSGAVPEQDRGLPKRFDFARSARTDKGVSAVGQVVSG 1431
            GYQGMQKNPGAKTIEGDLEEALY SGAVPEQDRG+PKR+D+ARSARTDKGVSAVGQVVSG
Sbjct: 62   GYQGMQKNPGAKTIEGDLEEALYVSGAVPEQDRGVPKRYDWARSARTDKGVSAVGQVVSG 121

Query: 1430 RFYVDPPGLIERLNSNLSPQIRIFGFKRVTGSFNAKKFCDRRRYVYLIPVFALDPSCHRD 1251
            RFY+DPPGL++RLNSNL  QIRIFG+KRVT SFNAKKFCDRRRYVYLIPVFALDPSCHRD
Sbjct: 122  RFYIDPPGLVDRLNSNLPSQIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFALDPSCHRD 181

Query: 1250 RESVLASVGSENELVKCLECSERGRKVFGVMGNRNLHSKSDSEAVSVDSSITLNTSSLLE 1071
            RE+V+AS+GS NELVKCLECSERGRKV G++GNR      + EAV V++ I+ N  S + 
Sbjct: 182  RETVMASLGSGNELVKCLECSERGRKVVGLVGNRK--QNLELEAVDVEAGISSNRDSGV- 238

Query: 1070 LENDEKIVVKTSEXXXXXXXXXXNADDNKFNTE-------------------PVKD---- 960
                E + V  S+            DDN  N E                   PV++    
Sbjct: 239  ---TEDVEVSLSK-----------GDDNHLNEESGNDNKGGMNCKTGLETVIPVQEEGTP 284

Query: 959  -LGDGAAQSDKIEEDKVDCGDVDGNLKPEKRSEFSYGEQERERFNRILKFYEGTHNFHNF 783
              G+    SD +EE+K     V+G  KP   S F YGE+ERERFN+ILK + GTHNFHNF
Sbjct: 285  LNGESVNNSDILEEEK-----VNGEDKPTNGSRFCYGEKERERFNKILKCFVGTHNFHNF 339

Query: 782  TTRTKAEDPSAKRYIISFNANTTINVEGIEFVKCEVIGQSFMLHQIRKLIGLAVAIMRNI 603
            TTRTKAEDP+A+RYIISFNANTT+ VEG+EFVKCEV+GQSFMLHQIRK+IGLAVAIMRN 
Sbjct: 340  TTRTKAEDPAARRYIISFNANTTLVVEGVEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNC 399

Query: 602  APESLIEAAFEQNVNINVPMAPEVGLYLDECFFSSYNKKWKDSHEELSMKAYAEEAEDFK 423
            APESLI+ A +Q+VNINVP APEVGLYLDECFF+SYN+KWKD HEELSMKAY +EA++FK
Sbjct: 400  APESLIDEALQQDVNINVPTAPEVGLYLDECFFTSYNQKWKD-HEELSMKAYEKEADEFK 458

Query: 422  MKYIYSHIASTEHKDGVVALWLHSLNYRNYSDLRGLN 312
            MKYIYSHIASTE K+G VALWLHSLN+RNY DLR +N
Sbjct: 459  MKYIYSHIASTEQKEGTVALWLHSLNHRNYPDLRVIN 495


>ref|XP_012073705.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
            [Jatropha curcas] gi|643728920|gb|KDP36857.1|
            hypothetical protein JCGZ_08148 [Jatropha curcas]
          Length = 539

 Score =  656 bits (1693), Expect = 0.0
 Identities = 350/548 (63%), Positives = 405/548 (73%), Gaps = 33/548 (6%)
 Frame = -2

Query: 1823 VENPNPS-ADHQPQEEEEQPNSKKLKMSTTTSDDDENYDKAPAAADADGTILPRKPRYKR 1647
            +ENP+     + PQ+EE  P  KK +MSTTTSDD+E      A  D   T   +K RYKR
Sbjct: 1    MENPDSKITTYAPQQEE--PEHKKPRMSTTTSDDEET-----ALGDTTAT---KKLRYKR 50

Query: 1646 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYHSGAVPEQDRGLPKRFDFARSARTD 1467
            RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEAL+ SGAVPE DRG+PKR+D+ARSARTD
Sbjct: 51   RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFQSGAVPEHDRGIPKRYDWARSARTD 110

Query: 1466 KGVSAVGQVVSGRFYVDPPGLIERLNSNLSPQIRIFGFKRVTGSFNAKKFCDRRRYVYLI 1287
            KGVSAVGQVVSGRFY+DPPGL+ERLNSNLS QIRIFG+KRVTGSFNAKKFCDRRRYVYLI
Sbjct: 111  KGVSAVGQVVSGRFYIDPPGLVERLNSNLSSQIRIFGYKRVTGSFNAKKFCDRRRYVYLI 170

Query: 1286 PVFALDPSCHRDRESVLASVGSENELVKCLECSERGRKVFGVMGNRNLHSKS-------- 1131
            PVFALDPS HRDRESVLAS+GS NELVKC ECSERGRKV G +GNR+  SKS        
Sbjct: 171  PVFALDPSSHRDRESVLASLGSGNELVKCWECSERGRKVIGAVGNRSFESKSFVSHTSIS 230

Query: 1130 --DSEAV-----SVDSSITLNTSS------LLELENDEKI----------VVKTSEXXXX 1020
              D +A+       D+S+T + ++        E   + K+           +  S     
Sbjct: 231  SNDGDAIVKSEIKEDTSVTADNAADDGDNINAEFAEEAKVSENNCAQTQSAIPKSRILLN 290

Query: 1019 XXXXXXNADDNKFNTEPVKDLGDGAAQSDKIEED-KVDCGDVDGNLKPEKRSEFSYGEQE 843
                    D  +    PV    D  A+S+++ +D KV    VDG  +  + S F YGE+E
Sbjct: 291  NIGANTKPDTTEELMVPVDHADDVNAKSERLGDDLKVGEEKVDGEEQVMEGSVFCYGEKE 350

Query: 842  RERFNRILKFYEGTHNFHNFTTRTKAEDPSAKRYIISFNANTTINVEGIEFVKCEVIGQS 663
            +ERFNRIL +Y G+HNFHNFTTRTKAEDP+A+RYIISF+A TT+ VEGIEFVKCEV+GQS
Sbjct: 351  KERFNRILSYYVGSHNFHNFTTRTKAEDPAARRYIISFDAKTTVTVEGIEFVKCEVVGQS 410

Query: 662  FMLHQIRKLIGLAVAIMRNIAPESLIEAAFEQNVNINVPMAPEVGLYLDECFFSSYNKKW 483
            FMLHQIRK+IG+AVAIMRN APESLI  A +++VNINVP APEVGLYLDECFF+SYN+KW
Sbjct: 411  FMLHQIRKMIGVAVAIMRNCAPESLISTALQKDVNINVPTAPEVGLYLDECFFTSYNQKW 470

Query: 482  KDSHEELSMKAYAEEAEDFKMKYIYSHIASTEHKDGVVALWLHSLNYRNYSDLRGLNSGQ 303
            KDSHEELSMK Y E AEDFK+ YIYSHIASTEHK+G VALWLHSLN+RNY DL   N G 
Sbjct: 471  KDSHEELSMKVYEEVAEDFKVTYIYSHIASTEHKEGTVALWLHSLNHRNYPDLLPKNYGD 530

Query: 302  STETKCDE 279
            +   KC E
Sbjct: 531  TNGEKCME 538


>gb|KHN42806.1| tRNA pseudouridine synthase 1 [Glycine soja]
          Length = 552

 Score =  655 bits (1690), Expect = 0.0
 Identities = 347/517 (67%), Positives = 395/517 (76%), Gaps = 24/517 (4%)
 Frame = -2

Query: 1790 PQEEEEQPNSKKLKMSTTTSDDDENYDKAPAAADADGTILPRKPRYKRRKIAIFFAYCGV 1611
            P    E+P  KKLKMSTTTSDD+E            GT    K RYKRRK+AIFFAYCGV
Sbjct: 17   PPVSAEEPEPKKLKMSTTTSDDEE-------CIAGTGT----KKRYKRRKVAIFFAYCGV 65

Query: 1610 GYQGMQKNPGAKTIEGDLEEALYHSGAVPEQDRGLPKRFDFARSARTDKGVSAVGQVVSG 1431
            GYQGMQKNPGAKTIEGDLEEALY SGAVPEQDRG+PKR+D+ARSARTDKGVSAVGQVVSG
Sbjct: 66   GYQGMQKNPGAKTIEGDLEEALYVSGAVPEQDRGVPKRYDWARSARTDKGVSAVGQVVSG 125

Query: 1430 RFYVDPPGLIERLNSNLSPQIRIFGFKRVTGSFNAKKFCDRRRYVYLIPVFALDPSCHRD 1251
            RFY+DPPGL++RLNSNL  QIRIFG+KRVT SFNAKKFCDRRRYVYLIPVFALDPSCHRD
Sbjct: 126  RFYIDPPGLVDRLNSNLPSQIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFALDPSCHRD 185

Query: 1250 RESVLASVGSENELVKCLECSERGRKVFGVMGNRNLHSKSDSEAVSVDSSITLNTSSLLE 1071
            RE+V+AS+GS NELVKCLECSERGRKV G++GNR      + EAV V++ I+ N  S + 
Sbjct: 186  RETVMASLGSGNELVKCLECSERGRKVVGLVGNRK--QNLELEAVDVEAGISSNRDSGV- 242

Query: 1070 LENDEKIVVKTSEXXXXXXXXXXNADDNKFNTE-------------------PVKD---- 960
                E + V  S+            DDN  N E                   PV++    
Sbjct: 243  ---TEDVEVSLSK-----------GDDNHLNEESGNDNKGGMNCKTGLETVIPVQEEGTP 288

Query: 959  -LGDGAAQSDKIEEDKVDCGDVDGNLKPEKRSEFSYGEQERERFNRILKFYEGTHNFHNF 783
              G+    SD +EE+K     V+G  KP   S F YGE+ERERFN+ILK + GTHNFHNF
Sbjct: 289  LNGESVNNSDILEEEK-----VNGEDKPTNGSRFCYGEKERERFNKILKCFVGTHNFHNF 343

Query: 782  TTRTKAEDPSAKRYIISFNANTTINVEGIEFVKCEVIGQSFMLHQIRKLIGLAVAIMRNI 603
            TTRTKAEDP+A+RYIISFNANTT+ VEG+EFVKCEV+GQSFMLHQIRK+IGLAVAIMRN 
Sbjct: 344  TTRTKAEDPAARRYIISFNANTTLVVEGVEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNC 403

Query: 602  APESLIEAAFEQNVNINVPMAPEVGLYLDECFFSSYNKKWKDSHEELSMKAYAEEAEDFK 423
            APESLI+ A +Q+VNINVP APEVGLYLDECFF+SYN+KWKD HEELSMKAY +EA++FK
Sbjct: 404  APESLIDEALQQDVNINVPTAPEVGLYLDECFFTSYNQKWKD-HEELSMKAYEKEADEFK 462

Query: 422  MKYIYSHIASTEHKDGVVALWLHSLNYRNYSDLRGLN 312
            MKYIYSHIASTE K+G VALWLHSLN+RNY DL  +N
Sbjct: 463  MKYIYSHIASTEQKEGTVALWLHSLNHRNYPDLHVIN 499


>ref|XP_010064573.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Eucalyptus
            grandis] gi|629102556|gb|KCW68025.1| hypothetical protein
            EUGRSUZ_F01708 [Eucalyptus grandis]
          Length = 553

 Score =  651 bits (1679), Expect = 0.0
 Identities = 339/525 (64%), Positives = 390/525 (74%), Gaps = 21/525 (4%)
 Frame = -2

Query: 1790 PQEEEEQPNSKKLKMSTTTSDDDENYDKAPAAADADGT--ILPRKPRYKRRKIAIFFAYC 1617
            P+++E  P   K+  +TTTSDDDE    APA ADADG      RKPRYKRRK+AIFFAYC
Sbjct: 32   PRQQEPDPKKPKMSSTTTTSDDDE---AAPALADADGAGDETTRKPRYKRRKVAIFFAYC 88

Query: 1616 GVGYQGMQKNPGAKTIEGDLEEALYHSGAVPEQDRGLPKRFDFARSARTDKGVSAVGQVV 1437
            GVGYQGMQKNPGAKTIEGDLEEAL+ SGAV E DRG PKR+D+ARSARTDKGVSAVGQVV
Sbjct: 89   GVGYQGMQKNPGAKTIEGDLEEALFLSGAVSEADRGNPKRYDWARSARTDKGVSAVGQVV 148

Query: 1436 SGRFYVDPPGLIERLNSNLSPQIRIFGFKRVTGSFNAKKFCDRRRYVYLIPVFALDPSCH 1257
            SGRFY+DPPGL++RLNSNL+PQIRIFG+KR T SF+AKKFCDRRRYVYLIPVFALDPS H
Sbjct: 149  SGRFYIDPPGLVDRLNSNLNPQIRIFGYKRATASFSAKKFCDRRRYVYLIPVFALDPSSH 208

Query: 1256 RDRESVLASVGSENELVKCLECSERGRKVFGVMGNRNLHSKS-------------DSEAV 1116
            RDRESV AS+GS NELVKCLECSERGRKV GVMG RN   +              DS   
Sbjct: 209  RDRESVAASLGSGNELVKCLECSERGRKVVGVMGKRNFELRGHVSDSNGCEEATVDSVDA 268

Query: 1115 SVDSSITLNTSSLLELENDEKIVVKTSEXXXXXXXXXXNAD--DNKFNTEPVKDLGDGAA 942
             V+S IT N          ++ +V +S             D  D     + V  +    A
Sbjct: 269  KVESGITSNDCCAFMGNEGKEGIVDSSSNGIDDKSISDVIDKVDTSTMVDTVVSVDSAPA 328

Query: 941  QSDKIE----EDKVDCGDVDGNLKPEKRSEFSYGEQERERFNRILKFYEGTHNFHNFTTR 774
             SD       + K+    V+G  KP K SEF YGE+ +ERFNRIL +Y G+HNFHNFTTR
Sbjct: 329  DSDTGSVLNLDGKIAETIVNGEEKPVKGSEFCYGEEMKERFNRILGYYVGSHNFHNFTTR 388

Query: 773  TKAEDPSAKRYIISFNANTTINVEGIEFVKCEVIGQSFMLHQIRKLIGLAVAIMRNIAPE 594
            TKAEDPSA+RYI+SFN +T + VEG+EFVKCEV+GQSFMLHQIRK++GLAVAIMRN APE
Sbjct: 389  TKAEDPSARRYILSFNGDTVVTVEGMEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNCAPE 448

Query: 593  SLIEAAFEQNVNINVPMAPEVGLYLDECFFSSYNKKWKDSHEELSMKAYAEEAEDFKMKY 414
            +LI  A +++V +NVP APEVGLYLDECFF+SYN KWKDSHEELSMK Y +EAEDFKMK+
Sbjct: 449  TLIVNALQKDVKVNVPTAPEVGLYLDECFFTSYNNKWKDSHEELSMKDYEKEAEDFKMKH 508

Query: 413  IYSHIASTEHKDGVVALWLHSLNYRNYSDLRGLNSGQSTETKCDE 279
            IY HIA TEHK+GVVALWLHSLN+RNY DLR  +  + TE K  E
Sbjct: 509  IYPHIALTEHKEGVVALWLHSLNHRNYPDLRAGDKQELTENKSSE 553


>ref|XP_007154900.1| hypothetical protein PHAVU_003G157400g [Phaseolus vulgaris]
            gi|593783723|ref|XP_007154902.1| hypothetical protein
            PHAVU_003G157400g [Phaseolus vulgaris]
            gi|561028254|gb|ESW26894.1| hypothetical protein
            PHAVU_003G157400g [Phaseolus vulgaris]
            gi|561028256|gb|ESW26896.1| hypothetical protein
            PHAVU_003G157400g [Phaseolus vulgaris]
          Length = 586

 Score =  651 bits (1679), Expect = 0.0
 Identities = 346/530 (65%), Positives = 392/530 (73%), Gaps = 29/530 (5%)
 Frame = -2

Query: 1790 PQEEEEQPNSKKLKMSTTTSDDDENYDKAPAAADADGTILPRKPRYKRRKIAIFFAYCGV 1611
            P    E+P  KKLKMSTT+  DDE    AP A          K RYKRRKIAIFFAYCGV
Sbjct: 17   PPLAAEEPEPKKLKMSTTS--DDEECTTAPGA----------KKRYKRRKIAIFFAYCGV 64

Query: 1610 GYQGMQKNPGAKTIEGDLEEALYHSGAVPEQDRGLPKRFDFARSARTDKGVSAVGQVVSG 1431
            GYQGMQKNPGAKTIEGDLEEALY SGAVPE DRG+PKR+D+ARSARTDKGVSAVGQVVSG
Sbjct: 65   GYQGMQKNPGAKTIEGDLEEALYVSGAVPEHDRGIPKRYDWARSARTDKGVSAVGQVVSG 124

Query: 1430 RFYVDPPGLIERLNSNLSPQIRIFGFKRVTGSFNAKKFCDRRRYVYLIPVFALDPSCHRD 1251
            RFY+DPPGL++RLNSNL  QIRIFG+KRVTGSFNAKKFCDRRRYVYLIPVFALDP CHRD
Sbjct: 125  RFYIDPPGLVDRLNSNLHSQIRIFGYKRVTGSFNAKKFCDRRRYVYLIPVFALDPCCHRD 184

Query: 1250 RESVLASVGSENELVKCLECSERGRKVFGVMGNRNLHSKSDSEAVSVDSSITLNTSSLLE 1071
            RE+V+AS+GS NELVKCLECSERGRKV G++GNR      + EA+ V++ I+ NT  +L+
Sbjct: 185  RETVMASLGSTNELVKCLECSERGRKVVGLVGNRK--HNLELEAMDVEAGISSNTDVVLD 242

Query: 1070 LENDEKIVVKTSEXXXXXXXXXXNADDNKFNTE------------------------PVK 963
                  +    S+            DDN  N E                        PV+
Sbjct: 243  SVVTGDVEASLSK-----------GDDNHLNGESGIDNKGKVLVDGTNLKTGIEKGIPVQ 291

Query: 962  DL-----GDGAAQSDKIEEDKVDCGDVDGNLKPEKRSEFSYGEQERERFNRILKFYEGTH 798
            D      G+    SD IEE+K++     G  K    S F YGE+ERERFN+IL  + GTH
Sbjct: 292  DEVMPLNGESVNNSDIIEEEKMN-----GEDKSTSGSMFCYGEKERERFNKILNCFVGTH 346

Query: 797  NFHNFTTRTKAEDPSAKRYIISFNANTTINVEGIEFVKCEVIGQSFMLHQIRKLIGLAVA 618
            NFHNFTTRTKAEDP+A+RYIISFNANT   VEGIEFVKCEV+GQSFMLHQIRK++GLAVA
Sbjct: 347  NFHNFTTRTKAEDPAARRYIISFNANTAFAVEGIEFVKCEVVGQSFMLHQIRKMMGLAVA 406

Query: 617  IMRNIAPESLIEAAFEQNVNINVPMAPEVGLYLDECFFSSYNKKWKDSHEELSMKAYAEE 438
            IMRN APESLI  A +Q+VNINVP APEVGLYLDECFFSSYN+KWKDSHEELSMKAY +E
Sbjct: 407  IMRNCAPESLINKALQQDVNINVPTAPEVGLYLDECFFSSYNQKWKDSHEELSMKAYEKE 466

Query: 437  AEDFKMKYIYSHIASTEHKDGVVALWLHSLNYRNYSDLRGLNSGQSTETK 288
            AE+FKMKYIYSHI+ TE K+G VALWLHSLN+RNY DLR +N    T+ K
Sbjct: 467  AEEFKMKYIYSHISFTEQKEGTVALWLHSLNHRNYPDLRVVNEEAITDNK 516


>ref|XP_007010013.1| Pseudouridine synthase [Theobroma cacao] gi|508726926|gb|EOY18823.1|
            Pseudouridine synthase [Theobroma cacao]
          Length = 507

 Score =  649 bits (1673), Expect = 0.0
 Identities = 336/521 (64%), Positives = 395/521 (75%), Gaps = 4/521 (0%)
 Frame = -2

Query: 1790 PQEEEEQPNSKKLKMSTTTSDDDENYDKAPAAADADGTILPRKPRYKRRKIAIFFAYCGV 1611
            P    ++P+ K+LKMSTTT+ DDE       A+  +GT   +K RYKRRKIAIFFAYCGV
Sbjct: 18   PPPTTQEPDPKRLKMSTTTTSDDEE-----TASATNGT---KKQRYKRRKIAIFFAYCGV 69

Query: 1610 GYQGMQKNPGAKTIEGDLEEALYHSGAVPEQDRGLPKRFDFARSARTDKGVSAVGQVVSG 1431
            GYQGMQKNPGAKTIEGDLEEAL+HSGAVPEQDRG PKR+D+ARSARTDKGVSAVGQVVSG
Sbjct: 70   GYQGMQKNPGAKTIEGDLEEALFHSGAVPEQDRGNPKRYDWARSARTDKGVSAVGQVVSG 129

Query: 1430 RFYVDPPGLIERLNSNLSPQIRIFGFKRVTGSFNAKKFCDRRRYVYLIPVFALDPSCHRD 1251
            RFY+DPPGL+ERLN  L  QIRIFG+KRVT SFN+KKFCDRRRYVYLIPVFALDPSCHRD
Sbjct: 130  RFYIDPPGLVERLNRILPAQIRIFGYKRVTASFNSKKFCDRRRYVYLIPVFALDPSCHRD 189

Query: 1250 RESVLASVGSENELVKCLECSERGRKVFGVMGNRNLHSKSDSEAVSVDSSITLNTSSLLE 1071
            RESVLAS+GS NELVKCLECSERGRKV GVMG R+  +KS      V S ++ N      
Sbjct: 190  RESVLASLGSGNELVKCLECSERGRKVAGVMGKRSFEAKS----TIVHSDVSSNNGESGN 245

Query: 1070 LENDEKIVVKTSEXXXXXXXXXXNADDNKFNTEPVKDLGDGAAQSDKIEEDKVDCGDVDG 891
            +  +  +                        T  ++++ D + Q++  E DKV+   +  
Sbjct: 246  VIKEHNL------------------------TSELEEVTDSSVQNEFTEVDKVNVEKI-- 279

Query: 890  NLKPEKRSEFSYGEQERERFNRILKFYEGTHNFHNFTTRTKAEDPSAKRYIISFNANTTI 711
               P +   F YGE+E+  FNRILK Y G+HNFHNFTTRTKAEDPSA+RYI+SF+ANT +
Sbjct: 280  ---PLEERRFCYGEEEKGLFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIVSFHANTVV 336

Query: 710  NVEGIEFVKCEVIGQSFMLHQIRKLIGLAVAIMRNIAPESLIEAAFEQNVNINVPMAPEV 531
            NVEGI+FVKCEV+GQSFMLHQIRK+IG+AVA+MRN APESLIE A  ++V+INVP APEV
Sbjct: 337  NVEGIDFVKCEVVGQSFMLHQIRKMIGMAVAVMRNCAPESLIETALRKDVSINVPTAPEV 396

Query: 530  GLYLDECFFSSYNKKWKDSHEELSMKAYAEEAEDFKMKYIYSHIASTEHKDGVVALWLHS 351
            GLYLDEC F+SYN+KWKDSHEELSMKAY EEAE+FKMK+IYSHIASTE ++GVVALWLHS
Sbjct: 397  GLYLDECLFASYNQKWKDSHEELSMKAYEEEAEEFKMKFIYSHIASTEREEGVVALWLHS 456

Query: 350  LNYRNYSDLRGLNSG--QSTETKCDEFVDN--CQSTGVKHN 240
            LN+RNY DLRG N    +    K D+  DN   +S  V+ N
Sbjct: 457  LNHRNYPDLRGCNVEMIEGMSLKVDDNTDNTDAKSASVEKN 497


>ref|XP_008452911.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Cucumis
            melo] gi|659104353|ref|XP_008452912.1| PREDICTED: tRNA
            pseudouridine synthase A, mitochondrial-like [Cucumis
            melo] gi|307136307|gb|ADN34131.1| tRNA pseudouridine
            synthase family protein [Cucumis melo subsp. melo]
          Length = 519

 Score =  648 bits (1672), Expect = 0.0
 Identities = 341/519 (65%), Positives = 394/519 (75%), Gaps = 16/519 (3%)
 Frame = -2

Query: 1829 MEVENPNPSADHQPQEEEEQPNSKKLKMS-TTTSDDDENYDKAPAAADADGTILPRKPRY 1653
            ME E P  +    PQ   E+P+ KKLKMS TTT+ DDE+ +   AA        P+K RY
Sbjct: 1    MEEEPPTETRRSPPQPLIEEPDPKKLKMSSTTTTSDDEDVNSNSAA--------PKKQRY 52

Query: 1652 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYHSGAVPEQDRGLPKRFDFARSAR 1473
            KRRK+AIFFAYCGVGYQGMQKNPGAKTIE DLEEALY +GAVPEQDRGL KR+D+ARSAR
Sbjct: 53   KRRKVAIFFAYCGVGYQGMQKNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYDWARSAR 112

Query: 1472 TDKGVSAVGQVVSGRFYVDPPGLIERLNSNLSPQIRIFGFKRVTGSFNAKKFCDRRRYVY 1293
            TDKGVSAVGQVVSGRFY+DPPG ++RLNSNLSPQIRIFG+KRVT SFNAKKFCDRRRYVY
Sbjct: 113  TDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCDRRRYVY 172

Query: 1292 LIPVFALDPSCHRDRESVLASVGSENELVKCLECSERGRKVFGVMGNRNLHSKSDSEAVS 1113
            LIPVFALDP+CHRDRESV AS+GS+NELVKCLECSERGRKV G+MG RN   K+      
Sbjct: 173  LIPVFALDPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLMGKRNFEVKT----AI 228

Query: 1112 VDSSITLNTSSLLELENDEKIVVKTSEXXXXXXXXXXNADDNKFNTEPVKD-------LG 954
             +S I+ N  + +E        V   +           +D NK  +  V++         
Sbjct: 229  TESDISSNIVNAIE--------VSDVQANGVLEDSATTSDSNKQTSVLVENTATELTVAS 280

Query: 953  DGAAQSDKIE--------EDKVDCGDVDGNLKPEKRSEFSYGEQERERFNRILKFYEGTH 798
            +G A+S+  E        E  V    V+G  KP     F YGE+E+ RFNRILK Y GTH
Sbjct: 281  EGIAKSESSEMSGLGNDSEIVVSKESVNGKEKPS--GSFKYGEEEKARFNRILKHYVGTH 338

Query: 797  NFHNFTTRTKAEDPSAKRYIISFNANTTINVEGIEFVKCEVIGQSFMLHQIRKLIGLAVA 618
            NFHNFTTRTKAEDP+A+R+I+SF+A+TT+ VEGIEFVKCEV+GQSFMLHQIRK++GLAVA
Sbjct: 339  NFHNFTTRTKAEDPAARRFIVSFDASTTVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVA 398

Query: 617  IMRNIAPESLIEAAFEQNVNINVPMAPEVGLYLDECFFSSYNKKWKDSHEELSMKAYAEE 438
            IMRN APESLIE A +++VNINVP APEVGLYLDEC F+SYN+KWKD+HEE+SMKAY E 
Sbjct: 399  IMRNCAPESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEEVSMKAYEEV 458

Query: 437  AEDFKMKYIYSHIASTEHKDGVVALWLHSLNYRNYSDLR 321
            AEDFKMK IYSHIASTEHKDG VALWLHSLN+RNY DLR
Sbjct: 459  AEDFKMKQIYSHIASTEHKDGAVALWLHSLNHRNYPDLR 497


>ref|XP_011034929.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Populus
            euphratica]
          Length = 534

 Score =  645 bits (1665), Expect = 0.0
 Identities = 338/518 (65%), Positives = 391/518 (75%), Gaps = 11/518 (2%)
 Frame = -2

Query: 1829 MEVENPNPSADHQPQEEEEQPNSKKLKMSTTTSDDDENYDKAPAAADADGTILPRKPRYK 1650
            ME       A   PQ+E   P+ KK KMSTTTSDD++     P      G    +K RYK
Sbjct: 1    METPASKTIASPPPQQE---PDLKKPKMSTTTSDDEDAATMTPG-----GDTTTKKQRYK 52

Query: 1649 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYHSGAVPEQDRGLPKRFDFARSART 1470
            RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEAL+H+GAVPEQDRG+PKR+D+ARSART
Sbjct: 53   RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHAGAVPEQDRGIPKRYDWARSART 112

Query: 1469 DKGVSAVGQVVSGRFYVDPPGLIERLNSNLSPQIRIFGFKRVTGSFNAKKFCDRRRYVYL 1290
            DKGVSAVGQVVSGRFY+DPPGL+ERL+SNLSPQ RIFG+KRVTGSFNAKKFCDRRRYVYL
Sbjct: 113  DKGVSAVGQVVSGRFYIDPPGLVERLHSNLSPQFRIFGYKRVTGSFNAKKFCDRRRYVYL 172

Query: 1289 IPVFALDPSCHRDRESVLASVGSENELVKCLECSERGRKVFGVMGNRNLH----SKSDSE 1122
            IPVFALDP  HRDRESVLAS+GS +EL+KCLECSERGRKV G +G R+      S +D +
Sbjct: 173  IPVFALDPCSHRDRESVLASLGSGSELIKCLECSERGRKVAGAVGKRSFELTDISSNDKD 232

Query: 1121 AVSVDSSITLNTSSLLELENDEKIVVKTSEXXXXXXXXXXNADDNKFNTEPVKDLGDGAA 942
            A SV S I       + L+N  + +  +                     EPV       A
Sbjct: 233  A-SVKSEIKEEVG--VHLDNGLEDIRNSETVNETKIFQNDGCGSKSVMPEPVIPSNSEDA 289

Query: 941  QSDKIEEDK----VDCGDVDGNLKPE---KRSEFSYGEQERERFNRILKFYEGTHNFHNF 783
              +   +D+    V+ GD +     E   KRS F YGE+E+ERFNRIL +Y G+HNFHNF
Sbjct: 290  NVNTENKDEIIVSVENGDDEKTKSKEEMVKRSRFCYGEKEKERFNRILGYYVGSHNFHNF 349

Query: 782  TTRTKAEDPSAKRYIISFNANTTINVEGIEFVKCEVIGQSFMLHQIRKLIGLAVAIMRNI 603
            TTRTKAEDPSA+RY++SF A TT+NVEGIEFVKCEV+GQSFMLHQIRK+IG+AVAIMRN 
Sbjct: 350  TTRTKAEDPSARRYMVSFEAKTTVNVEGIEFVKCEVVGQSFMLHQIRKMIGVAVAIMRNC 409

Query: 602  APESLIEAAFEQNVNINVPMAPEVGLYLDECFFSSYNKKWKDSHEELSMKAYAEEAEDFK 423
            APESLI+ A +++VNINVP APEVGLYLDEC F+SYNKKWKDSHEE+SMK Y EEAEDFK
Sbjct: 410  APESLIQTALQKDVNINVPTAPEVGLYLDECLFTSYNKKWKDSHEEISMKDYEEEAEDFK 469

Query: 422  MKYIYSHIASTEHKDGVVALWLHSLNYRNYSDLRGLNS 309
            MK+IYSHIA+TEHK+G V+LWLHSLN RNY DLR  N+
Sbjct: 470  MKHIYSHIATTEHKEGSVSLWLHSLNQRNYPDLRVSNT 507


>ref|XP_002307759.2| hypothetical protein POPTR_0005s26830g [Populus trichocarpa]
            gi|550339814|gb|EEE94755.2| hypothetical protein
            POPTR_0005s26830g [Populus trichocarpa]
          Length = 497

 Score =  645 bits (1664), Expect = 0.0
 Identities = 334/513 (65%), Positives = 400/513 (77%), Gaps = 5/513 (0%)
 Frame = -2

Query: 1823 VENPNPSADHQPQEEEEQPNSKKLKMSTTTSDDDENYDKAPAAADADGTILPRKPRYKRR 1644
            +E P+      P  ++E P+ K+ KMSTTTS+D+   D A      D TI  +K RYKRR
Sbjct: 1    METPDSKTTTSPPRQQE-PDLKRPKMSTTTSEDE---DAATTTPGDDTTI--KKQRYKRR 54

Query: 1643 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYHSGAVPEQDRGLPKRFDFARSARTDK 1464
            KIAIF  YCGVGYQGMQKNPGAKTIEGDLEEAL+H+GAVPE DRG+PKR+D+ARSARTDK
Sbjct: 55   KIAIFLTYCGVGYQGMQKNPGAKTIEGDLEEALFHAGAVPEHDRGIPKRYDWARSARTDK 114

Query: 1463 GVSAVGQVVSGRFYVDPPGLIERLNSNLSPQIRIFGFKRVTGSFNAKKFCDRRRYVYLIP 1284
            GVSAVGQVVSGRFY+DPPGL+ERL+SNLSPQIRIFG+KRVTGSFNAKKFCDRRRYVYLIP
Sbjct: 115  GVSAVGQVVSGRFYIDPPGLVERLHSNLSPQIRIFGYKRVTGSFNAKKFCDRRRYVYLIP 174

Query: 1283 VFALDPSCHRDRESVLASVGSENELVKCLECSERGRKVFGVMGNRNLHSKSDSEAVSVDS 1104
            VFAL+P  HRDRESVLAS+GS +ELVKCL+CSERGRKV G +G R+  SKSD     + S
Sbjct: 175  VFALNPCSHRDRESVLASLGSGSELVKCLQCSERGRKVVGAVGKRSFESKSDVSPTEIWS 234

Query: 1103 SITLNTSSLLELENDEKIVVKTSEXXXXXXXXXXNADDNKFNTEPVKD-----LGDGAAQ 939
            +   +  + L+ E  E++ + ++            ++D   N E +KD     + +G  +
Sbjct: 235  N---DKDTTLKSEIKEEVSISSN------------SEDANANPE-IKDEIMVSIENGDDK 278

Query: 938  SDKIEEDKVDCGDVDGNLKPEKRSEFSYGEQERERFNRILKFYEGTHNFHNFTTRTKAED 759
            + K EE+ +            K S F YGE+E+ERFNRIL +Y G+HNFHNFTTRTKAED
Sbjct: 279  NTKSEEEAI------------KGSGFCYGEKEKERFNRILNYYLGSHNFHNFTTRTKAED 326

Query: 758  PSAKRYIISFNANTTINVEGIEFVKCEVIGQSFMLHQIRKLIGLAVAIMRNIAPESLIEA 579
            PSA+RYIISF+A TT+ VEGIEFVKCEV+GQSFMLHQIRK+IG+AVAIMRN A ESLI+ 
Sbjct: 327  PSAQRYIISFDAKTTVAVEGIEFVKCEVVGQSFMLHQIRKMIGVAVAIMRNCASESLIQT 386

Query: 578  AFEQNVNINVPMAPEVGLYLDECFFSSYNKKWKDSHEELSMKAYAEEAEDFKMKYIYSHI 399
            A ++NVNINVP APEVGLYLDECFF+SYN+KWKDSHEELSMK Y EEAE+FKMK+IYSHI
Sbjct: 387  ALQKNVNINVPTAPEVGLYLDECFFTSYNQKWKDSHEELSMKDYEEEAEEFKMKHIYSHI 446

Query: 398  ASTEHKDGVVALWLHSLNYRNYSDLRGLNSGQS 300
            A+TEHK+G VALWLHSLN+RNY DLR  ++G +
Sbjct: 447  ATTEHKEGSVALWLHSLNHRNYPDLRACDNGDN 479


>ref|XP_004145528.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Cucumis
            sativus] gi|700200317|gb|KGN55475.1| hypothetical protein
            Csa_4G652870 [Cucumis sativus]
          Length = 519

 Score =  645 bits (1663), Expect = 0.0
 Identities = 337/517 (65%), Positives = 392/517 (75%), Gaps = 14/517 (2%)
 Frame = -2

Query: 1829 MEVENPNPSADHQPQEEEEQPNSKKLKMS-TTTSDDDENYDKAPAAADADGTILPRKPRY 1653
            ME E P  +    PQ   E+P  KKLKMS TTT+ DDE+ +   AA        P+K RY
Sbjct: 1    MEEEPPTETRRSPPQPLIEEPQPKKLKMSSTTTTSDDEDVNSNSAA--------PKKQRY 52

Query: 1652 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYHSGAVPEQDRGLPKRFDFARSAR 1473
            KRRK+AIFFAYCGVGYQGMQKNPGAKTIE DLEEALY +GAVPEQDRGL KR+D+ARSAR
Sbjct: 53   KRRKVAIFFAYCGVGYQGMQKNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYDWARSAR 112

Query: 1472 TDKGVSAVGQVVSGRFYVDPPGLIERLNSNLSPQIRIFGFKRVTGSFNAKKFCDRRRYVY 1293
            TDKGVSAVGQVVSGRFY+DPPG ++RLNSNLSPQIRIFG+KRVT SFNAKKFCDRRRYVY
Sbjct: 113  TDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCDRRRYVY 172

Query: 1292 LIPVFALDPSCHRDRESVLASVGSENELVKCLECSERGRKVFGVMGNRNLHSKSDSEAVS 1113
            LIPVFALDP+CHRDRESV AS+GS+NELVKCLECSERGRKV G++G RN   K+      
Sbjct: 173  LIPVFALDPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLIGKRNFEVKT----AI 228

Query: 1112 VDSSITLNTSSLLELENDEKIVVKTSEXXXXXXXXXXNADDNK------FNTEPVKDLG- 954
             +S I+ NT + +E        V   +           +D NK       NT    ++G 
Sbjct: 229  TESDISSNTVNAIE--------VSDVQANGVLEDSATTSDSNKQTSVLVENTATELNVGS 280

Query: 953  DGAAQSDKIE------EDKVDCGDVDGNLKPEKRSEFSYGEQERERFNRILKFYEGTHNF 792
            +G A+S+  E      + ++       N K +    F YGE+E+ RFNRILK Y GTHNF
Sbjct: 281  EGTAKSESSEMSGLGSDSEIVVSKESVNGKEKSSGSFKYGEEEKARFNRILKHYVGTHNF 340

Query: 791  HNFTTRTKAEDPSAKRYIISFNANTTINVEGIEFVKCEVIGQSFMLHQIRKLIGLAVAIM 612
            HNFTTRTKAEDP+A+R+I+SF+A+  + VEGIEFVKCEV+GQSFMLHQIRK++GLAVAIM
Sbjct: 341  HNFTTRTKAEDPAARRFIVSFDASAIVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIM 400

Query: 611  RNIAPESLIEAAFEQNVNINVPMAPEVGLYLDECFFSSYNKKWKDSHEELSMKAYAEEAE 432
            RN APESLIE A +++VNINVP APEVGLYLDEC F+SYN+KWKD+HEE+SMKAY E AE
Sbjct: 401  RNCAPESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEEVSMKAYEEAAE 460

Query: 431  DFKMKYIYSHIASTEHKDGVVALWLHSLNYRNYSDLR 321
            DFKMK IYSHIASTEHKDG VALWLHSLN+RNY DLR
Sbjct: 461  DFKMKQIYSHIASTEHKDGAVALWLHSLNHRNYPDLR 497


>ref|XP_006575306.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like isoform
            X2 [Glycine max]
          Length = 518

 Score =  644 bits (1660), Expect = 0.0
 Identities = 341/503 (67%), Positives = 388/503 (77%), Gaps = 24/503 (4%)
 Frame = -2

Query: 1748 MSTTTSDDDENYDKAPAAADADGTILPRKPRYKRRKIAIFFAYCGVGYQGMQKNPGAKTI 1569
            MSTTTSDD+E            GT    K RYKRRK+AIFFAYCGVGYQGMQKNPGAKTI
Sbjct: 1    MSTTTSDDEET-----------GT----KKRYKRRKVAIFFAYCGVGYQGMQKNPGAKTI 45

Query: 1568 EGDLEEALYHSGAVPEQDRGLPKRFDFARSARTDKGVSAVGQVVSGRFYVDPPGLIERLN 1389
            EGDLEEALY SGAVPEQDRG+PKR+D+ARSARTDKGVSAVGQVVSGRFY+DPPGL++RLN
Sbjct: 46   EGDLEEALYVSGAVPEQDRGVPKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLN 105

Query: 1388 SNLSPQIRIFGFKRVTGSFNAKKFCDRRRYVYLIPVFALDPSCHRDRESVLASVGSENEL 1209
            SNL  QIRIFG+KRVT SFNAKKFCDRRRYVYLIPVFALDPSCHRDRE+V+AS+GS NEL
Sbjct: 106  SNLPSQIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFALDPSCHRDRETVMASLGSGNEL 165

Query: 1208 VKCLECSERGRKVFGVMGNRNLHSKSDSEAVSVDSSITLNTSSLLELENDEKIVVKTSEX 1029
            VKCLECSERGRKV G++GNR      + EAV V++ I+ N  S +     E + V  S+ 
Sbjct: 166  VKCLECSERGRKVVGLVGNRK--QNLELEAVDVEAGISSNRDSGV----TEDVEVSLSK- 218

Query: 1028 XXXXXXXXXNADDNKFNTE-------------------PVKD-----LGDGAAQSDKIEE 921
                       DDN  N E                   PV++      G+    SD +EE
Sbjct: 219  ----------GDDNHLNEESGNDNKGGMNCKTGLETVIPVQEEGTPLNGESVNNSDILEE 268

Query: 920  DKVDCGDVDGNLKPEKRSEFSYGEQERERFNRILKFYEGTHNFHNFTTRTKAEDPSAKRY 741
            +K     V+G  KP   S F YGE+ERERFN+ILK + GTHNFHNFTTRTKAEDP+A+RY
Sbjct: 269  EK-----VNGEDKPTNGSRFCYGEKERERFNKILKCFVGTHNFHNFTTRTKAEDPAARRY 323

Query: 740  IISFNANTTINVEGIEFVKCEVIGQSFMLHQIRKLIGLAVAIMRNIAPESLIEAAFEQNV 561
            IISFNANTT+ VEG+EFVKCEV+GQSFMLHQIRK+IGLAVAIMRN APESLI+ A +Q+V
Sbjct: 324  IISFNANTTLVVEGVEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNCAPESLIDEALQQDV 383

Query: 560  NINVPMAPEVGLYLDECFFSSYNKKWKDSHEELSMKAYAEEAEDFKMKYIYSHIASTEHK 381
            NINVP APEVGLYLDECFF+SYN+KWKD HEELSMKAY +EA++FKMKYIYSHIASTE K
Sbjct: 384  NINVPTAPEVGLYLDECFFTSYNQKWKD-HEELSMKAYEKEADEFKMKYIYSHIASTEQK 442

Query: 380  DGVVALWLHSLNYRNYSDLRGLN 312
            +G VALWLHSLN+RNY DLR +N
Sbjct: 443  EGTVALWLHSLNHRNYPDLRVIN 465


>ref|XP_011003107.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase A,
            mitochondrial [Populus euphratica]
          Length = 538

 Score =  641 bits (1654), Expect = 0.0
 Identities = 339/526 (64%), Positives = 402/526 (76%), Gaps = 18/526 (3%)
 Frame = -2

Query: 1823 VENPNPSADHQPQEEEEQPNSKKLKMSTTTSDDDENYDKAPAAADADGTILPRKPRYKRR 1644
            +E P+      P  ++E  + K+ KMS TTS+D+   D A      D TI  +K RYKRR
Sbjct: 1    METPDSKTTTSPPPQQES-DLKRPKMSATTSEDE---DAATTTPGDDTTI--KKQRYKRR 54

Query: 1643 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYHSGAVPEQDRGLPKRFDFARSARTDK 1464
            KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEAL+H+GAVPE DRG+PKR+D+ARSARTDK
Sbjct: 55   KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHAGAVPEHDRGIPKRYDWARSARTDK 114

Query: 1463 GVSAVGQVVSGRFYVDPPGLIERLNSNLSPQIRIFGFKRVTGSFNAKKFCDRRRYVYLIP 1284
            GVSAVGQVVSGRFY+DPPGL+ERL+SNLSPQIRIFG+KRVTGSFNAKKFCDRRRYVYLIP
Sbjct: 115  GVSAVGQVVSGRFYIDPPGLVERLHSNLSPQIRIFGYKRVTGSFNAKKFCDRRRYVYLIP 174

Query: 1283 VFALDPSCHRDRESVLASVGSENELVKCLECSERGRKVFGVMGNRNLHSKSD---SEAVS 1113
            VFAL+P  HRDRESVLAS+GS +ELVKCL+CSERGRKV G +G R+  SKSD   +E  S
Sbjct: 175  VFALNPCSHRDRESVLASLGSGSELVKCLQCSERGRKVVGAVGKRSFESKSDVSPTEIWS 234

Query: 1112 VDSSITL------NTSSLLELENDEKIVVKTSEXXXXXXXXXXNADDNKFNT--EPVKDL 957
             D   TL        S L++  + +   ++ SE               K  T    +   
Sbjct: 235  NDKDTTLKYEIKEEVSGLMDNGDGD---IRNSEPVDETKVFQNEDSGKKSETTESGISSN 291

Query: 956  GDGAAQSDKIEED---KVDCGDVDGNLKPE----KRSEFSYGEQERERFNRILKFYEGTH 798
             + A  + +I+++    ++ GD D N K E    K S F YGE+E+ERFNRIL +Y G+H
Sbjct: 292  SEDANANPEIKDEMMVSIENGD-DKNTKSEEEAIKGSGFCYGEKEKERFNRILNYYVGSH 350

Query: 797  NFHNFTTRTKAEDPSAKRYIISFNANTTINVEGIEFVKCEVIGQSFMLHQIRKLIGLAVA 618
            NFHNFTTRTKAEDPSA+RYIISF+A TT+ VEGIEFVKCEV+GQSFMLHQIRK+IG+AVA
Sbjct: 351  NFHNFTTRTKAEDPSAQRYIISFDAKTTVTVEGIEFVKCEVVGQSFMLHQIRKMIGVAVA 410

Query: 617  IMRNIAPESLIEAAFEQNVNINVPMAPEVGLYLDECFFSSYNKKWKDSHEELSMKAYAEE 438
            IMRN A ESLI+ A ++NVNINVP APEVGLYLDECFF+SYN+KWKDSHEELSMK Y EE
Sbjct: 411  IMRNCASESLIQTALQKNVNINVPTAPEVGLYLDECFFTSYNQKWKDSHEELSMKDYEEE 470

Query: 437  AEDFKMKYIYSHIASTEHKDGVVALWLHSLNYRNYSDLRGLNSGQS 300
            AE+FKM++IYSHIA+TEHK+G VALWLHSLNY NY DLR  ++G +
Sbjct: 471  AEEFKMQHIYSHIATTEHKEGSVALWLHSLNYXNYPDLRVCDNGDN 516


>ref|XP_008221186.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Prunus mume]
          Length = 532

 Score =  639 bits (1649), Expect = e-180
 Identities = 336/529 (63%), Positives = 395/529 (74%), Gaps = 11/529 (2%)
 Frame = -2

Query: 1823 VENPNPSADHQPQEEEEQPNSKKLKMSTTTSDDDENYDKAPAAADADGTILPRKPRYKRR 1644
            +ENP+      P  +E  P+ KKLKMSTTT+ DD+           D T   +K RYKRR
Sbjct: 1    MENPDTKTTISPPPQE--PDPKKLKMSTTTTSDDDE------TTTMDTT---KKQRYKRR 49

Query: 1643 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYHSGAVPEQDRGLPKRFDFARSARTDK 1464
            K+AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALY S AVPEQDR  PKR+D+ARSARTDK
Sbjct: 50   KVAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYLSNAVPEQDRNNPKRYDWARSARTDK 109

Query: 1463 GVSAVGQVVSGRFYVDPPGLIERLNSNLSPQIRIFGFKRVTGSFNAKKFCDRRRYVYLIP 1284
            GVSAVGQVVSGRFYVDPPG ++RLNSN+SPQIRIFG+KRVT SFNAKKFCDRRRYVYLIP
Sbjct: 110  GVSAVGQVVSGRFYVDPPGFVDRLNSNISPQIRIFGYKRVTASFNAKKFCDRRRYVYLIP 169

Query: 1283 VFALDPSCHRDRESVLASVGSENELVKCLECSERGRKVFGVMGNRNLHSKSDSEAVSVDS 1104
            VFALDPS HRDRESVLAS+GS+ E VKCLECSERGRKV G+MG RN   +  S  + + S
Sbjct: 170  VFALDPSAHRDRESVLASLGSDKEFVKCLECSERGRKVGGLMGKRNYELRGTSFGLDISS 229

Query: 1103 SITLNTSSLLELENDEKIVVK------TSEXXXXXXXXXXNADDNKFNTEPVKDLGDGAA 942
            +      S++E E +E+  V                    ++++N  +   V+D  D   
Sbjct: 230  N---TNESMVESEFNEETKVSPDNAGGDDSKSEPKNEISTSSNNNGVSGVEVEDSEDTDL 286

Query: 941  QSDKIEE-DKVDCGD--VDGNLKPEK--RSEFSYGEQERERFNRILKFYEGTHNFHNFTT 777
             S+ + +  KV  G+   +G  KPEK   SEF YGE+E++RFNRIL  YEGTHNFHNFTT
Sbjct: 287  NSEPLNDTTKVSVGEENANGEEKPEKGSGSEFCYGEKEKDRFNRILNCYEGTHNFHNFTT 346

Query: 776  RTKAEDPSAKRYIISFNANTTINVEGIEFVKCEVIGQSFMLHQIRKLIGLAVAIMRNIAP 597
            RTKA DP+A RYIISFNANTT+ V G++FVKCEV+GQSFMLHQIRK+IGLAVAI RN AP
Sbjct: 347  RTKAADPAAWRYIISFNANTTVTVGGMDFVKCEVVGQSFMLHQIRKMIGLAVAIFRNCAP 406

Query: 596  ESLIEAAFEQNVNINVPMAPEVGLYLDECFFSSYNKKWKDSHEELSMKAYAEEAEDFKMK 417
            +SL+E A +++VN+NVP APEVGLYLDECFF+SYN+KW DSHEELSMK Y +EAEDFKMK
Sbjct: 407  DSLLEIALQKDVNVNVPTAPEVGLYLDECFFASYNQKWGDSHEELSMKDYEQEAEDFKMK 466

Query: 416  YIYSHIASTEHKDGVVALWLHSLNYRNYSDLRGLNSGQSTETKCDEFVD 270
            +IY HIASTE K+GVV LWLHSLN+RNY DL    +     T  +E VD
Sbjct: 467  HIYPHIASTEQKEGVVGLWLHSLNHRNYPDLCTTGADNDGNTSNEESVD 515


>ref|XP_002510619.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223551320|gb|EEF52806.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 584

 Score =  638 bits (1646), Expect = e-180
 Identities = 339/552 (61%), Positives = 394/552 (71%), Gaps = 33/552 (5%)
 Frame = -2

Query: 1823 VENPNPSADHQPQEEEEQPNSKKLKMSTTTSDDDENYDKAPAAADADGTILPRKPRYKRR 1644
            +EN +      P +EE  P  K+ +MSTTTSD++E    AP     D     +K RYKRR
Sbjct: 1    MENSDLKITSPPPQEE--PERKRPRMSTTTSDEEEIATTAPG----DEAATVKKQRYKRR 54

Query: 1643 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYHSGAVPEQDRGLPKRFDFARSARTDK 1464
            K+AIFFAYCGVGYQGMQKNPGAKTIEGDLEEAL+HSGAVPEQDRG PKR+D+ARSARTDK
Sbjct: 55   KMAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVPEQDRGCPKRYDWARSARTDK 114

Query: 1463 GVSAVGQVVSGRFYVDPPGLIERLNSNLSPQIRIFGFKRVTGSFNAKKFCDRRRYVYLIP 1284
            GVSAVGQV+SGRFYVDPPGL++RLNS L  QIRIFG+KRVT SFNAKKFCDRRRYVYLIP
Sbjct: 115  GVSAVGQVISGRFYVDPPGLVDRLNSILPSQIRIFGYKRVTASFNAKKFCDRRRYVYLIP 174

Query: 1283 VFALDPSCHRDRESVLASVGSENELVKCLECSERGRKVFGVMGNRNLHSKSDSEAVSV-- 1110
            VFALDPS HRDRESVLAS+GS +ELVKCLECSERGRKV G +G R+  SKS++    +  
Sbjct: 175  VFALDPSSHRDRESVLASLGSGDELVKCLECSERGRKVIGAVGKRSFESKSEAFQTDILL 234

Query: 1109 -------------DSSITLNTSSLLELENDEKIVVKTSEXXXXXXXXXXNADDNKFNTEP 969
                         D S++++ +  + + ++       S              D   N+E 
Sbjct: 235  NGGCAIANCEIKEDISMSMDNAHGVRMHSEFVEQTNVSHNEDSETESAMPRTDILSNSED 294

Query: 968  VKDLGDGAAQSDKIEEDKVDCGD------------------VDGNLKPEKRSEFSYGEQE 843
                 D   +   + ED  D G+                  V+G     K SEF YGE+E
Sbjct: 295  GNVKSDSKQEEVMVSEDAADGGNKESETMEKDSKASVGEERVNGEEHVMKGSEFCYGEEE 354

Query: 842  RERFNRILKFYEGTHNFHNFTTRTKAEDPSAKRYIISFNANTTINVEGIEFVKCEVIGQS 663
            +E+FNRILK+Y G+HNFHNFTTRTKAEDPSA+RYIISF+A TT+ VEGIEFVKCEVIGQS
Sbjct: 355  KEKFNRILKYYVGSHNFHNFTTRTKAEDPSAQRYIISFDARTTVTVEGIEFVKCEVIGQS 414

Query: 662  FMLHQIRKLIGLAVAIMRNIAPESLIEAAFEQNVNINVPMAPEVGLYLDECFFSSYNKKW 483
            FMLHQIRK+IGLAVAIMRN APESLI  A +++V INVP APEVGLYLDECFF+SYN+KW
Sbjct: 415  FMLHQIRKMIGLAVAIMRNCAPESLISTALQKDVKINVPTAPEVGLYLDECFFTSYNQKW 474

Query: 482  KDSHEELSMKAYAEEAEDFKMKYIYSHIASTEHKDGVVALWLHSLNYRNYSDLRGLNSGQ 303
            KD HEEL MK Y E AEDFKMKYIYSHIASTE K+GVV LWLHSLNYRNY DLR   +  
Sbjct: 475  KD-HEELCMKDYEEVAEDFKMKYIYSHIASTEQKEGVVGLWLHSLNYRNYPDLRFCYTLD 533

Query: 302  STETKCDEFVDN 267
            +   K  E V+N
Sbjct: 534  ANNEKSTEVVNN 545


>ref|XP_007154901.1| hypothetical protein PHAVU_003G157400g [Phaseolus vulgaris]
            gi|561028255|gb|ESW26895.1| hypothetical protein
            PHAVU_003G157400g [Phaseolus vulgaris]
          Length = 556

 Score =  638 bits (1646), Expect = e-180
 Identities = 336/513 (65%), Positives = 382/513 (74%), Gaps = 29/513 (5%)
 Frame = -2

Query: 1739 TTSDDDENYDKAPAAADADGTILPRKPRYKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGD 1560
            +T+ DDE    AP A          K RYKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGD
Sbjct: 2    STTSDDEECTTAPGA----------KKRYKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGD 51

Query: 1559 LEEALYHSGAVPEQDRGLPKRFDFARSARTDKGVSAVGQVVSGRFYVDPPGLIERLNSNL 1380
            LEEALY SGAVPE DRG+PKR+D+ARSARTDKGVSAVGQVVSGRFY+DPPGL++RLNSNL
Sbjct: 52   LEEALYVSGAVPEHDRGIPKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLNSNL 111

Query: 1379 SPQIRIFGFKRVTGSFNAKKFCDRRRYVYLIPVFALDPSCHRDRESVLASVGSENELVKC 1200
              QIRIFG+KRVTGSFNAKKFCDRRRYVYLIPVFALDP CHRDRE+V+AS+GS NELVKC
Sbjct: 112  HSQIRIFGYKRVTGSFNAKKFCDRRRYVYLIPVFALDPCCHRDRETVMASLGSTNELVKC 171

Query: 1199 LECSERGRKVFGVMGNRNLHSKSDSEAVSVDSSITLNTSSLLELENDEKIVVKTSEXXXX 1020
            LECSERGRKV G++GNR      + EA+ V++ I+ NT  +L+      +    S+    
Sbjct: 172  LECSERGRKVVGLVGNRK--HNLELEAMDVEAGISSNTDVVLDSVVTGDVEASLSK---- 225

Query: 1019 XXXXXXNADDNKFNTE------------------------PVKDL-----GDGAAQSDKI 927
                    DDN  N E                        PV+D      G+    SD I
Sbjct: 226  -------GDDNHLNGESGIDNKGKVLVDGTNLKTGIEKGIPVQDEVMPLNGESVNNSDII 278

Query: 926  EEDKVDCGDVDGNLKPEKRSEFSYGEQERERFNRILKFYEGTHNFHNFTTRTKAEDPSAK 747
            EE+K++     G  K    S F YGE+ERERFN+IL  + GTHNFHNFTTRTKAEDP+A+
Sbjct: 279  EEEKMN-----GEDKSTSGSMFCYGEKERERFNKILNCFVGTHNFHNFTTRTKAEDPAAR 333

Query: 746  RYIISFNANTTINVEGIEFVKCEVIGQSFMLHQIRKLIGLAVAIMRNIAPESLIEAAFEQ 567
            RYIISFNANT   VEGIEFVKCEV+GQSFMLHQIRK++GLAVAIMRN APESLI  A +Q
Sbjct: 334  RYIISFNANTAFAVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNCAPESLINKALQQ 393

Query: 566  NVNINVPMAPEVGLYLDECFFSSYNKKWKDSHEELSMKAYAEEAEDFKMKYIYSHIASTE 387
            +VNINVP APEVGLYLDECFFSSYN+KWKDSHEELSMKAY +EAE+FKMKYIYSHI+ TE
Sbjct: 394  DVNINVPTAPEVGLYLDECFFSSYNQKWKDSHEELSMKAYEKEAEEFKMKYIYSHISFTE 453

Query: 386  HKDGVVALWLHSLNYRNYSDLRGLNSGQSTETK 288
             K+G VALWLHSLN+RNY DLR +N    T+ K
Sbjct: 454  QKEGTVALWLHSLNHRNYPDLRVVNEEAITDNK 486


>ref|XP_006342092.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Solanum
            tuberosum]
          Length = 569

 Score =  635 bits (1639), Expect = e-179
 Identities = 326/496 (65%), Positives = 382/496 (77%), Gaps = 3/496 (0%)
 Frame = -2

Query: 1790 PQEEEEQPNSKKLKMSTTTSDDDENYDKAPAAADADGTILPRKPRYKRRKIAIFFAYCGV 1611
            P    E+P  KKLKMSTTT+ DDE Y    AA   DG+   RKPRYKRRK+AIFFAYCGV
Sbjct: 7    PSSITEEPQPKKLKMSTTTTSDDEEY----AAGAGDGSAPERKPRYKRRKVAIFFAYCGV 62

Query: 1610 GYQGMQKNPGAKTIEGDLEEALYHSGAVPEQDRGLPKRFDFARSARTDKGVSAVGQVVSG 1431
            GYQGMQKNPGAKTIEGDLEEALY +G VP+ D+  P+++++ARSARTDKGVSAVGQVVSG
Sbjct: 63   GYQGMQKNPGAKTIEGDLEEALYQAGGVPDHDKCQPRKYEWARSARTDKGVSAVGQVVSG 122

Query: 1430 RFYVDPPGLIERLNSNLSPQIRIFGFKRVTGSFNAKKFCDRRRYVYLIPVFALDPSCHRD 1251
            RFYVDPPG I+RLNS L PQIRIFGFKRVT +F+AKKFCD+RRYVYL+PVFALDP  HRD
Sbjct: 123  RFYVDPPGFIDRLNSILVPQIRIFGFKRVTNAFSAKKFCDKRRYVYLVPVFALDPYAHRD 182

Query: 1250 RESVLASVGSENELVKCLECSERGRKVFGVMGNRNLHSKSDSEAVSVDSSITLNTSSLLE 1071
            RESVLAS+GS  EL KCL C ERGRKV GVMG R     + S  + VD+ +         
Sbjct: 183  RESVLASLGSGKELAKCLNCPERGRKVVGVMGRRVFDPITQS-VIIVDAPVV-------- 233

Query: 1070 LENDEKIVVKTSEXXXXXXXXXXNADDNKFNTEPVKDLGDGAAQSDKIEEDKVDCGDVDG 891
                                   NA+D   +T  V  + + A+ S+K+EE   +    + 
Sbjct: 234  -----------------------NANDPTTDTNMV--IENEASLSEKVEERNGEVEGSNE 268

Query: 890  NLKPEKRSE---FSYGEQERERFNRILKFYEGTHNFHNFTTRTKAEDPSAKRYIISFNAN 720
            N K E++ E   F YGE+E+ERFNRILK+YEGTHNFHNFTTRTKA+DP+AKRYIISFNAN
Sbjct: 269  NAKMEEQVEESVFCYGEKEKERFNRILKYYEGTHNFHNFTTRTKADDPAAKRYIISFNAN 328

Query: 719  TTINVEGIEFVKCEVIGQSFMLHQIRKLIGLAVAIMRNIAPESLIEAAFEQNVNINVPMA 540
            T +NV+GI+FVKCEV+GQSFMLHQIRK+IGLAVAIMRN APESLI  AF ++VNINVPMA
Sbjct: 329  TVVNVDGIDFVKCEVVGQSFMLHQIRKMIGLAVAIMRNCAPESLIVTAFRRDVNINVPMA 388

Query: 539  PEVGLYLDECFFSSYNKKWKDSHEELSMKAYAEEAEDFKMKYIYSHIASTEHKDGVVALW 360
            PEVGLYLDECFF+SYN KWKD+HEE+S+KAY EEAE+FKMKYIYSHIASTE K+G +A+W
Sbjct: 389  PEVGLYLDECFFTSYNSKWKDTHEEVSLKAYLEEAEEFKMKYIYSHIASTEQKEGTMAVW 448

Query: 359  LHSLNYRNYSDLRGLN 312
            LHSLN+RNY DLR ++
Sbjct: 449  LHSLNHRNYPDLRAVD 464


>ref|XP_010266077.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial isoform X2
            [Nelumbo nucifera]
          Length = 475

 Score =  634 bits (1635), Expect = e-179
 Identities = 324/480 (67%), Positives = 376/480 (78%), Gaps = 2/480 (0%)
 Frame = -2

Query: 1754 LKMSTTTSDDDENYDKAPAAADADGTILPRKPRYKRRKIAIFFAYCGVGYQGMQKNPGAK 1575
            +  +TTT+ DDE Y+  P +AD   T   RK RYKRRK+AIFFAYCGVGYQGMQKNPGAK
Sbjct: 1    MSSTTTTTSDDEEYEINPNSAD---TTTQRKRRYKRRKVAIFFAYCGVGYQGMQKNPGAK 57

Query: 1574 TIEGDLEEALYHSGAVPEQDRGLPKRFDFARSARTDKGVSAVGQVVSGRFYVDPPGLIER 1395
            TIEGDLEEALY SGAVPE DRG PKRFD+ARSARTDKGVSAVGQVVSGRFY+DPPGL++R
Sbjct: 58   TIEGDLEEALYLSGAVPEVDRGNPKRFDWARSARTDKGVSAVGQVVSGRFYIDPPGLVDR 117

Query: 1394 LNSNLSPQIRIFGFKRVTGSFNAKKFCDRRRYVYLIPVFALDPSCHRDRESVLASVGSEN 1215
            LNSNL  QIRIFGFKRVT SFNAKKFCDRRRYVYLIPVFALDPS HRDRESVLAS+GSEN
Sbjct: 118  LNSNLPSQIRIFGFKRVTSSFNAKKFCDRRRYVYLIPVFALDPSSHRDRESVLASLGSEN 177

Query: 1214 ELVKCLECSERGRKVFGVMGNRNLHSKSDSEAVSVDSSITLNTSSLLEL--ENDEKIVVK 1041
            ELVKCLECSERGRKV GVMG RN  SK+     +  S   L + +++ +   ++ KI  +
Sbjct: 178  ELVKCLECSERGRKVAGVMGRRNSESKNVENGGNDASQSGLTSDNVITVLSHSETKIEPE 237

Query: 1040 TSEXXXXXXXXXXNADDNKFNTEPVKDLGDGAAQSDKIEEDKVDCGDVDGNLKPEKRSEF 861
             S            A D    +    D    A   ++ +++ V CG  +G     K   F
Sbjct: 238  VSSIDAVALSNFALAVDPCLVS---SDNSAAAPHPEQADQNLVRCG--NGGGAAVKGRVF 292

Query: 860  SYGEQERERFNRILKFYEGTHNFHNFTTRTKAEDPSAKRYIISFNANTTINVEGIEFVKC 681
             YGE+E+ERFNRILK YEGTHNFHNFTTRTK EDPSA RYI+SF+AN  + VEGI+FVKC
Sbjct: 293  CYGEKEKERFNRILKHYEGTHNFHNFTTRTKVEDPSANRYIVSFDANKVVTVEGIDFVKC 352

Query: 680  EVIGQSFMLHQIRKLIGLAVAIMRNIAPESLIEAAFEQNVNINVPMAPEVGLYLDECFFS 501
            EV+GQSFMLHQIRK++GLAVA+MRN APESLI  A ++++NINVP APEVGLYLDEC F+
Sbjct: 353  EVVGQSFMLHQIRKMVGLAVAVMRNCAPESLINIALQKDININVPTAPEVGLYLDECLFT 412

Query: 500  SYNKKWKDSHEELSMKAYAEEAEDFKMKYIYSHIASTEHKDGVVALWLHSLNYRNYSDLR 321
            SYN+KWKDSHEE+SM+AY EEAEDFK++ IY+HI+ TE K+GVVALWLHSLN+RNY DLR
Sbjct: 413  SYNQKWKDSHEEISMEAYKEEAEDFKIQQIYTHISFTEQKEGVVALWLHSLNHRNYPDLR 472


>ref|XP_006435279.1| hypothetical protein CICLE_v10000838mg [Citrus clementina]
            gi|557537401|gb|ESR48519.1| hypothetical protein
            CICLE_v10000838mg [Citrus clementina]
          Length = 526

 Score =  633 bits (1632), Expect = e-178
 Identities = 332/520 (63%), Positives = 398/520 (76%), Gaps = 15/520 (2%)
 Frame = -2

Query: 1808 PSADHQPQEEEEQPNSKKLKMSTTTSDDDENYDKAPAAADADGTILPRKPRYKRRKIAIF 1629
            PS    P++E   P+ K+LKMS T++ DDE  D  PAAA AD T   ++   KRRKIAIF
Sbjct: 12   PSPSLSPRQE---PDPKRLKMSATSTSDDER-DLIPAAAGADSTT--KRQLCKRRKIAIF 65

Query: 1628 FAYCGVGYQGMQKNPGAKTIEGDLEEALYHSGAVPEQDRGLPKRFDFARSARTDKGVSAV 1449
            FAYCGVGYQGMQKNPGAKTIEGDLEEAL+HSGAV E+DRG P+R+D+ARSARTDKGVSAV
Sbjct: 66   FAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAV 125

Query: 1448 GQVVSGRFYVDPPGLIERLNSNLSPQIRIFGFKRVTGSFNAKKFCDRRRYVYLIPVFALD 1269
            GQVVSGRF +DPPGL+ERLNSNL  QIRIFG+KRVT SFNAKKFCD+RRYVYL+PVFALD
Sbjct: 126  GQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALD 185

Query: 1268 PSCHRDRESVLASVGSENELVKCLECSERGRKVFGVMGNRN--LHSKSDSEAVSVDSSIT 1095
             S HRDRESV+AS+GS NELVKCLECSERGRKV GVMG R   L   S+ E  S++S + 
Sbjct: 186  SSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLGLPSNDENASLNSQVK 245

Query: 1094 LNT-----------SSLLELENDEKIVVKTSEXXXXXXXXXXNADDNKFNTEPVKDLGDG 948
            ++T           ++L  +E+++ I                   +++ +     +  D 
Sbjct: 246  VDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLVESRTSETVQNENTDL 305

Query: 947  AAQSDKIEEDKVDCGD--VDGNLKPEKRSEFSYGEQERERFNRILKFYEGTHNFHNFTTR 774
            +   D   + KV   +  V+G  K  K S F YGE+E++RFNRILK Y G+HNFHNFTTR
Sbjct: 306  SLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRILKHYVGSHNFHNFTTR 365

Query: 773  TKAEDPSAKRYIISFNANTTINVEGIEFVKCEVIGQSFMLHQIRKLIGLAVAIMRNIAPE 594
            TKAEDPSA+RYIISF A++ +NVEGI+F+KCEV+GQSFMLHQIRK+IGLAVA++RN APE
Sbjct: 366  TKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRKMIGLAVAVVRNCAPE 425

Query: 593  SLIEAAFEQNVNINVPMAPEVGLYLDECFFSSYNKKWKDSHEELSMKAYAEEAEDFKMKY 414
            SLIE A +++VNINVP APEVGLYLDEC F+SYNKKWKDSHEELSMKAY EEAE+FKMK+
Sbjct: 426  SLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEELSMKAYEEEAENFKMKH 485

Query: 413  IYSHIASTEHKDGVVALWLHSLNYRNYSDLRGLNSGQSTE 294
            I+SHIA TE K+GVVALWLHSLNYRNY DLR L + +S +
Sbjct: 486  IFSHIARTEQKEGVVALWLHSLNYRNYPDLRFLGNDESAD 525