BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia22_contig00013355
         (1494 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFB73912.1| polyprotein [Citrus sinensis]                          833   0.0  
gb|AFB73911.1| polyprotein [Citrus sinensis]                          829   0.0  
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              766   0.0  
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              765   0.0  
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              764   0.0  
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              764   0.0  
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  753   0.0  
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                             697   0.0  
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   396   e-107
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     392   e-106
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     389   e-105
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   389   e-105
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   389   e-105
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   389   e-105
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     387   e-104
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v...   384   e-104
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   384   e-103
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   383   e-103
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   383   e-103
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   383   e-103

>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  833 bits (2151), Expect = 0.0
 Identities = 405/500 (81%), Positives = 451/500 (90%), Gaps = 3/500 (0%)
 Frame = -3

Query: 1492 VFDEIAAAILEEESRRKNKEDRYTSSQKAEALSMTRGRSTERGPSGSQNRGRSKSVNKKN 1313
            VFD++AA++L EESRRKNKE+R  SSQ+AEALS+TRGRSTERGPSGSQN GRSKS +KKN
Sbjct: 168  VFDDVAASVLNEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGSQNHGRSKSRSKKN 227

Query: 1312 YRCYGCGKIGHLKRDC---RNKKKSGDPELSNAQGCVANTSDDGEVLYGEASIVAEDRKR 1142
             +CY CGK GH+K++C   + +++  +PE SNAQGCVA+TSDDGE+LY EA+IV+E RKR
Sbjct: 228  VKCYNCGKKGHVKKECWSNQKRREGKEPESSNAQGCVASTSDDGEILYSEATIVSEGRKR 287

Query: 1141 LANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGIGTIKIKMFDGTVRT 962
            L++VWLIDSGATWHMTSRREWFH YEPIS GSVYMG+DH LEIAGIGTIKIKMFDGT+RT
Sbjct: 288  LSDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTIRT 347

Query: 961  IQEVRHVKGLRKNLLSWGQLDDLGCEIRSKNGIMKIVRGALVLMQAEKIGPKLFMLKGET 782
            I+EVRHV GL+KNLLS GQ+D  GC+   +NGIMKIV+GALVLM+AEKI   LFMLKGET
Sbjct: 348  IEEVRHVNGLKKNLLSLGQMDSHGCKTHVENGIMKIVKGALVLMKAEKICANLFMLKGET 407

Query: 781  IQEADACVASTSKGEESSMMWHLKLGHMSEQGLKILSDRKLLPGLKSVNLPFCEYCVTSK 602
            +QEADACVAS   GEES+MMWHLKLGHMSEQGLKILS+RKL PGLKSV+LPFCE+CVTSK
Sbjct: 408  LQEADACVASN--GEESTMMWHLKLGHMSEQGLKILSERKLPPGLKSVSLPFCEHCVTSK 465

Query: 601  QHRLKFGRSGARSKYILDLIHSDVWESPDTSVGGAKYFVSFIDDYSRRCWVYPIKRKSDV 422
            QHRLKF RS ARSK ILDLIHSDVWESPD S+GGAKY V+FIDDYSRRCWVYPIK+KSDV
Sbjct: 466  QHRLKFSRSIARSKCILDLIHSDVWESPDISMGGAKYMVTFIDDYSRRCWVYPIKKKSDV 525

Query: 421  FPVFKEFKARVELESGKKIKCLRTDNGGEYTDGDFLVFCKQEGIDRQFTVAYTPQQNGVA 242
            FPVFKE+KA VELESGKKIKCLRTDNGGEYTD +FL FCKQEGI RQFTVAYTPQQNGVA
Sbjct: 526  FPVFKEYKAWVELESGKKIKCLRTDNGGEYTDSEFLAFCKQEGIQRQFTVAYTPQQNGVA 585

Query: 241  ERMNRTLTEKIRAMLRTADLPNSFWAEAAKTACYVINRSPSTAIELKTPMEMWTGKPPDY 62
            ERMNRTLTE+IRAMLRTA LPNSFWAEAAKTACY++NRSPSTAI LKT MEMWTGKP DY
Sbjct: 586  ERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNRSPSTAIGLKTAMEMWTGKPADY 645

Query: 61   SRLHSFGCPVYVMYNTQERT 2
            S LH+FGCPVYVMYN QERT
Sbjct: 646  SYLHAFGCPVYVMYNAQERT 665


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  829 bits (2141), Expect = 0.0
 Identities = 403/500 (80%), Positives = 449/500 (89%), Gaps = 3/500 (0%)
 Frame = -3

Query: 1492 VFDEIAAAILEEESRRKNKEDRYTSSQKAEALSMTRGRSTERGPSGSQNRGRSKSVNKKN 1313
            VFD++AA++L EESRRKNKE+R  SSQ+AEALS+TRGRSTERGPSGSQN+GRSK   KKN
Sbjct: 168  VFDDVAASVLNEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGSQNQGRSKFRGKKN 227

Query: 1312 YRCYGCGKIGHLKRDC---RNKKKSGDPELSNAQGCVANTSDDGEVLYGEASIVAEDRKR 1142
             +CY CGK GH+K++C   + +++  +PE SNAQGCVA+TSDDGE+LY EA+ V+E RKR
Sbjct: 228  VKCYNCGKKGHVKKECWSNQKRREGKEPETSNAQGCVASTSDDGEILYSEATTVSEGRKR 287

Query: 1141 LANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGIGTIKIKMFDGTVRT 962
            L++VWLIDSGATWHMTSRREWFH YEPIS GSVYMG+DH LEIAGIGTIKIKMFDGT+RT
Sbjct: 288  LSDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTIRT 347

Query: 961  IQEVRHVKGLRKNLLSWGQLDDLGCEIRSKNGIMKIVRGALVLMQAEKIGPKLFMLKGET 782
            I EVRHV GL+KNLLS GQ+D  G +   +NGIMKIV+GALVLM+ EKIG  LFMLKGET
Sbjct: 348  IGEVRHVNGLKKNLLSLGQMDSHGYKTHVENGIMKIVKGALVLMKVEKIGANLFMLKGET 407

Query: 781  IQEADACVASTSKGEESSMMWHLKLGHMSEQGLKILSDRKLLPGLKSVNLPFCEYCVTSK 602
            +QEADACVAS   GEES+MMWHLKLGHMSEQGLKILS+RKLLPGLKSV+LPFCE+CVTSK
Sbjct: 408  LQEADACVASN--GEESTMMWHLKLGHMSEQGLKILSERKLLPGLKSVSLPFCEHCVTSK 465

Query: 601  QHRLKFGRSGARSKYILDLIHSDVWESPDTSVGGAKYFVSFIDDYSRRCWVYPIKRKSDV 422
            QHRLKF RS ARSK ILDLIHSDVWESPD S+GGAKY V+FIDDYSRRCWVYPIK+KSDV
Sbjct: 466  QHRLKFSRSIARSKCILDLIHSDVWESPDISMGGAKYMVTFIDDYSRRCWVYPIKKKSDV 525

Query: 421  FPVFKEFKARVELESGKKIKCLRTDNGGEYTDGDFLVFCKQEGIDRQFTVAYTPQQNGVA 242
            FPVFKE+KA VELESGKKIKCLRTDNGGEYTDG+FL FCKQEGI RQFTVAYTPQQNGVA
Sbjct: 526  FPVFKEYKAWVELESGKKIKCLRTDNGGEYTDGEFLAFCKQEGIQRQFTVAYTPQQNGVA 585

Query: 241  ERMNRTLTEKIRAMLRTADLPNSFWAEAAKTACYVINRSPSTAIELKTPMEMWTGKPPDY 62
            ERMNRTLTE+IRAMLRTA LPNSFWAEAAKTACY++NRSPSTAI LKT MEMWTGKP DY
Sbjct: 586  ERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNRSPSTAIGLKTAMEMWTGKPADY 645

Query: 61   SRLHSFGCPVYVMYNTQERT 2
            S LH+FGCP+YVMYN QERT
Sbjct: 646  SYLHAFGCPMYVMYNAQERT 665


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  766 bits (1978), Expect = 0.0
 Identities = 368/498 (73%), Positives = 433/498 (86%), Gaps = 2/498 (0%)
 Frame = -3

Query: 1489 FDEIAAAILEEESRRKNKEDRYTSSQKAEALSMTRGRSTERGPSGSQNRGRSKSVNKKNY 1310
            FD++A AILEEESRRKNKE+R  SS++AEAL+MTRGRSTERGPSGSQN GRSKS  KKN 
Sbjct: 169  FDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNI 228

Query: 1309 RCYGCGKIGHLKRDCRNKKKSGDP--ELSNAQGCVANTSDDGEVLYGEASIVAEDRKRLA 1136
            +CYGCG  GH+K++C N KK+G+   E S +QGCVA+TSDDGE+LY EA+  ++  +RL 
Sbjct: 229  KCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLN 288

Query: 1135 NVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGIGTIKIKMFDGTVRTIQ 956
            +VW++DSGATWHMT  R+WF  YEPISEGSVYMG+DH LEIAG+GTI++KM DGTVR IQ
Sbjct: 289  DVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 955  EVRHVKGLRKNLLSWGQLDDLGCEIRSKNGIMKIVRGALVLMQAEKIGPKLFMLKGETIQ 776
             VRHVKGL+KNLLS GQLDDLGC+I +++GI+K+V+G LV+M+AEKI   L+ML G+T+Q
Sbjct: 349  GVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQ 408

Query: 775  EADACVASTSKGEESSMMWHLKLGHMSEQGLKILSDRKLLPGLKSVNLPFCEYCVTSKQH 596
            EADA VA+ S+ EE++MMWH +LGHMSE+GLK+L +R LL GLK+VNLPFCE+CV SKQH
Sbjct: 409  EADASVAAASQ-EETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQH 467

Query: 595  RLKFGRSGARSKYILDLIHSDVWESPDTSVGGAKYFVSFIDDYSRRCWVYPIKRKSDVFP 416
            RLKF R   RSK+ILDLIHSDVWESP+ S+GGA+YFVSFIDDYSRR WVYPIK+KSDVFP
Sbjct: 468  RLKFARVTTRSKHILDLIHSDVWESPELSLGGARYFVSFIDDYSRRLWVYPIKKKSDVFP 527

Query: 415  VFKEFKARVELESGKKIKCLRTDNGGEYTDGDFLVFCKQEGIDRQFTVAYTPQQNGVAER 236
            VFK FKA++ELE+GKKIKCLRTDNGGEY DG+FL FCKQEGI RQFTVA+TPQQNGVAER
Sbjct: 528  VFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAER 587

Query: 235  MNRTLTEKIRAMLRTADLPNSFWAEAAKTACYVINRSPSTAIELKTPMEMWTGKPPDYSR 56
            MNRTL E+ RAML+TA +  SFWAEA KTACYVINRSPSTAI+LKTPMEMW GKP DYS 
Sbjct: 588  MNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSS 647

Query: 55   LHSFGCPVYVMYNTQERT 2
            LH FGCPVYVMYN+QERT
Sbjct: 648  LHVFGCPVYVMYNSQERT 665


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  765 bits (1975), Expect = 0.0
 Identities = 366/498 (73%), Positives = 432/498 (86%), Gaps = 2/498 (0%)
 Frame = -3

Query: 1489 FDEIAAAILEEESRRKNKEDRYTSSQKAEALSMTRGRSTERGPSGSQNRGRSKSVNKKNY 1310
            FD++A AILEEESRRKNKE+R  SS++AEAL+MTRGRSTERGPSGSQN GRSKS  K N 
Sbjct: 169  FDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKNNI 228

Query: 1309 RCYGCGKIGHLKRDCRNKKKSGDP--ELSNAQGCVANTSDDGEVLYGEASIVAEDRKRLA 1136
            +CYGCG  GH+K++C N KK+G+   E + +QGCVA+TSDDGE+LY EA+  +E  ++L 
Sbjct: 229  KCYGCGMKGHVKKECWNNKKNGEKNSEATTSQGCVASTSDDGEILYSEAATSSEGERQLN 288

Query: 1135 NVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGIGTIKIKMFDGTVRTIQ 956
            +VW++DSGATWHMT  R+WF+ YEPISEGSVYMG+DH LEIAG+GTI++KM DGTVR IQ
Sbjct: 289  DVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 955  EVRHVKGLRKNLLSWGQLDDLGCEIRSKNGIMKIVRGALVLMQAEKIGPKLFMLKGETIQ 776
             VRHVKGL+KNLLS GQLDDLGC+I S++GI+K+V+G LV+M+AEKI   L+ML G+T+Q
Sbjct: 349  GVRHVKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQ 408

Query: 775  EADACVASTSKGEESSMMWHLKLGHMSEQGLKILSDRKLLPGLKSVNLPFCEYCVTSKQH 596
            EADA VA+ S+ EE++MMWH +LGHMSE+GLK+L +R LL GLK+VNLPFCE+CV SKQH
Sbjct: 409  EADASVAAASQ-EETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQH 467

Query: 595  RLKFGRSGARSKYILDLIHSDVWESPDTSVGGAKYFVSFIDDYSRRCWVYPIKRKSDVFP 416
            RLKF R   RSK+ILDLIHSDVWESP  S+GGA+YFVSFIDDYSRR WVYPIK+KSDVFP
Sbjct: 468  RLKFARVTTRSKHILDLIHSDVWESPKLSLGGARYFVSFIDDYSRRLWVYPIKKKSDVFP 527

Query: 415  VFKEFKARVELESGKKIKCLRTDNGGEYTDGDFLVFCKQEGIDRQFTVAYTPQQNGVAER 236
            VFK FKA++ELE+GKKIKCLRTDNGGEY DG+FL FCKQEGI RQFTVA+TPQQNGVAER
Sbjct: 528  VFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAER 587

Query: 235  MNRTLTEKIRAMLRTADLPNSFWAEAAKTACYVINRSPSTAIELKTPMEMWTGKPPDYSR 56
            MNRTL E+ RAML+TA++  SFWAEA KTACYVINRSPST I+LKTPMEMW GKP DYS 
Sbjct: 588  MNRTLLERTRAMLKTAEMAKSFWAEAVKTACYVINRSPSTTIDLKTPMEMWKGKPVDYSS 647

Query: 55   LHSFGCPVYVMYNTQERT 2
            LH FGCPVYVMYN+QERT
Sbjct: 648  LHVFGCPVYVMYNSQERT 665


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  764 bits (1974), Expect = 0.0
 Identities = 367/498 (73%), Positives = 434/498 (87%), Gaps = 2/498 (0%)
 Frame = -3

Query: 1489 FDEIAAAILEEESRRKNKEDRYTSSQKAEALSMTRGRSTERGPSGSQNRGRSKSVNKKNY 1310
            FD++A AILEEESRRKNKE+R  SS++AEAL+MTRGRSTERGPSGSQN GRSKS  KKN 
Sbjct: 169  FDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNI 228

Query: 1309 RCYGCGKIGHLKRDCRNKKKSGDP--ELSNAQGCVANTSDDGEVLYGEASIVAEDRKRLA 1136
            +CYGCG  GH+K++C N KK+G+   E S +QGCVA+TSDDGE+LY EA+  ++  +RL 
Sbjct: 229  KCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLN 288

Query: 1135 NVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGIGTIKIKMFDGTVRTIQ 956
            +VW++DSGATWHMT  R+WF+ YEPISEGSVYMG+DH LEIAG+GTI++KM DGTVR IQ
Sbjct: 289  DVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 955  EVRHVKGLRKNLLSWGQLDDLGCEIRSKNGIMKIVRGALVLMQAEKIGPKLFMLKGETIQ 776
             VRHVKGL+KNLLS GQLDDLGC+I +++GI+K+V+G LV+M+AEKI   L+ML G+T+Q
Sbjct: 349  GVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQ 408

Query: 775  EADACVASTSKGEESSMMWHLKLGHMSEQGLKILSDRKLLPGLKSVNLPFCEYCVTSKQH 596
            EADA VA+ S+ EE++MMWH +LGHMSE+GLK+L +R LL GLK+VNLPFCE+CV SKQH
Sbjct: 409  EADASVAAASQ-EETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVMSKQH 467

Query: 595  RLKFGRSGARSKYILDLIHSDVWESPDTSVGGAKYFVSFIDDYSRRCWVYPIKRKSDVFP 416
            RLKF R   RSK+ILDLIHSDVWESP+ S+GGA+YFVSFIDDYSRR WVYPIK+KSDVFP
Sbjct: 468  RLKFARVTTRSKHILDLIHSDVWESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVFP 527

Query: 415  VFKEFKARVELESGKKIKCLRTDNGGEYTDGDFLVFCKQEGIDRQFTVAYTPQQNGVAER 236
            VFK FKA++ELE+ KKIKCLRTDNGGEY DG+FL FCKQEGI RQFTVA+TPQQNGVAER
Sbjct: 528  VFKAFKAQIELETEKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAER 587

Query: 235  MNRTLTEKIRAMLRTADLPNSFWAEAAKTACYVINRSPSTAIELKTPMEMWTGKPPDYSR 56
            MNRTL E+ RAML+TA +  SFWAEAAKTACYVINRSPSTAI+LKTPMEMW GKP DYS 
Sbjct: 588  MNRTLLERTRAMLKTAGMAKSFWAEAAKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSS 647

Query: 55   LHSFGCPVYVMYNTQERT 2
            LH FGCPVYVMYN+QE+T
Sbjct: 648  LHVFGCPVYVMYNSQEKT 665


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  764 bits (1973), Expect = 0.0
 Identities = 367/498 (73%), Positives = 434/498 (87%), Gaps = 2/498 (0%)
 Frame = -3

Query: 1489 FDEIAAAILEEESRRKNKEDRYTSSQKAEALSMTRGRSTERGPSGSQNRGRSKSVNKKNY 1310
            FD++A AILEEESRRKNKE+R  SS++AEAL+MTRGRSTERGPSGSQN GRSKS  KKN 
Sbjct: 169  FDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNI 228

Query: 1309 RCYGCGKIGHLKRDCRNKKKSGDP--ELSNAQGCVANTSDDGEVLYGEASIVAEDRKRLA 1136
            +CYGCG  GH+K++C N KK+G+   E S +QGCVA+TSDDGE+LY EA+  ++  +RL 
Sbjct: 229  KCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLN 288

Query: 1135 NVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGIGTIKIKMFDGTVRTIQ 956
            +VW++DSGATWHMT  R+WF  YEPISEGSVYMG+DH LEIAG+GTI++KM DGTVR IQ
Sbjct: 289  DVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 955  EVRHVKGLRKNLLSWGQLDDLGCEIRSKNGIMKIVRGALVLMQAEKIGPKLFMLKGETIQ 776
             VRHVKGL+KNLLS GQLDDLGC+I +++GI+K+V+G LV+M+AEKI   L+ML G+T+Q
Sbjct: 349  GVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQ 408

Query: 775  EADACVASTSKGEESSMMWHLKLGHMSEQGLKILSDRKLLPGLKSVNLPFCEYCVTSKQH 596
            EADA VA++S+ EE++MMWH +LGHMSE+GLK+L++R LL GLK+VNLPFCE+CV SKQH
Sbjct: 409  EADASVAASSQ-EETTMMWHQRLGHMSERGLKVLAERNLLHGLKAVNLPFCEHCVISKQH 467

Query: 595  RLKFGRSGARSKYILDLIHSDVWESPDTSVGGAKYFVSFIDDYSRRCWVYPIKRKSDVFP 416
            RLKF R   RSK+ILDLIHSDVWESP+ S+GGA+YFVSFIDDYSRR WVYPIK+KSDVFP
Sbjct: 468  RLKFARVTTRSKHILDLIHSDVWESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVFP 527

Query: 415  VFKEFKARVELESGKKIKCLRTDNGGEYTDGDFLVFCKQEGIDRQFTVAYTPQQNGVAER 236
            VFK FKA++ELE+ KKIKCLRTDNGGEY DG+FL FCKQEGI RQFTVA+TPQQNGVAER
Sbjct: 528  VFKAFKAQIELETRKKIKCLRTDNGGEYIDGEFLAFCKQEGIVRQFTVAHTPQQNGVAER 587

Query: 235  MNRTLTEKIRAMLRTADLPNSFWAEAAKTACYVINRSPSTAIELKTPMEMWTGKPPDYSR 56
            MNRTL E+ RAML+TA +  SFWAEA KTACYVINRSPSTAI+LKTPMEMW GKP DYS 
Sbjct: 588  MNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSS 647

Query: 55   LHSFGCPVYVMYNTQERT 2
            LH FGCPVYVMYN+QERT
Sbjct: 648  LHVFGCPVYVMYNSQERT 665


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  753 bits (1944), Expect = 0.0
 Identities = 363/498 (72%), Positives = 428/498 (85%), Gaps = 2/498 (0%)
 Frame = -3

Query: 1489 FDEIAAAILEEESRRKNKEDRYTSSQKAEALSMTRGRSTERGPSGSQNRGRSKSVNKKNY 1310
            F+++A AILEEESRRKNKEDR  SS++ EAL++TRGRSTERGPSGSQN GRS S  K N 
Sbjct: 169  FNDVAGAILEEESRRKNKEDRQDSSKQMEALTVTRGRSTERGPSGSQNHGRSTSRRKTNL 228

Query: 1309 RCYGCGKIGHLKRDCRNKKKSGDP--ELSNAQGCVANTSDDGEVLYGEASIVAEDRKRLA 1136
            +CY CGK GHLK+DC + KKSG+   E S +QGCVA+TSDDGEVLY EA++  + + RL 
Sbjct: 229  KCYNCGKRGHLKKDCWSNKKSGEKSSEASTSQGCVASTSDDGEVLYSEAAVSTKGKNRLT 288

Query: 1135 NVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGIGTIKIKMFDGTVRTIQ 956
            +VW++DSGATWHMT RR+WF  YEP+SEG+V+MG+DH LEI GIGT+KIKM+DGT+RT+Q
Sbjct: 289  DVWIVDSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDGTIRTLQ 348

Query: 955  EVRHVKGLRKNLLSWGQLDDLGCEIRSKNGIMKIVRGALVLMQAEKIGPKLFMLKGETIQ 776
            EVRHVK L KNLLS GQLDDLG +   + GI+K+V+G+LV+M+A+K+   L+ML G+T Q
Sbjct: 349  EVRHVKELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAKKVAANLYMLLGDTWQ 408

Query: 775  EADACVASTSKGEESSMMWHLKLGHMSEQGLKILSDRKLLPGLKSVNLPFCEYCVTSKQH 596
             ADA VA  S+ EE++MMWH +LGHMSE+GLK+L++R L+PGLKSV+LPFCE+CV SKQH
Sbjct: 409  MADASVAVGSQ-EETTMMWHRRLGHMSERGLKVLAERNLIPGLKSVSLPFCEHCVISKQH 467

Query: 595  RLKFGRSGARSKYILDLIHSDVWESPDTSVGGAKYFVSFIDDYSRRCWVYPIKRKSDVFP 416
            RLKF +S ARSK+ILDLIHSDVWESP+ S+GGAKYFVSFIDDYSRR WVYPIK+KS V+ 
Sbjct: 468  RLKFAKSTARSKHILDLIHSDVWESPEVSIGGAKYFVSFIDDYSRRLWVYPIKKKSGVYS 527

Query: 415  VFKEFKARVELESGKKIKCLRTDNGGEYTDGDFLVFCKQEGIDRQFTVAYTPQQNGVAER 236
            VFKEFKA+VELE+GK+IKCLRTDNGGEYTDGDFL FCKQEGI RQFTVA+TPQQNGVAER
Sbjct: 528  VFKEFKAQVELETGKRIKCLRTDNGGEYTDGDFLAFCKQEGITRQFTVAHTPQQNGVAER 587

Query: 235  MNRTLTEKIRAMLRTADLPNSFWAEAAKTACYVINRSPSTAIELKTPMEMWTGKPPDYSR 56
            MNRTL E+ RAML+TA L  SFWAEAAKTACYVINRSPSTAI LKTPMEMW GKP DYS 
Sbjct: 588  MNRTLLERTRAMLKTAGLAKSFWAEAAKTACYVINRSPSTAIGLKTPMEMWKGKPGDYSS 647

Query: 55   LHSFGCPVYVMYNTQERT 2
            L  FGCPVYVMYN+QERT
Sbjct: 648  LRVFGCPVYVMYNSQERT 665


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  697 bits (1799), Expect = 0.0
 Identities = 344/497 (69%), Positives = 406/497 (81%)
 Frame = -3

Query: 1492 VFDEIAAAILEEESRRKNKEDRYTSSQKAEALSMTRGRSTERGPSGSQNRGRSKSVNKKN 1313
            VFD++AAA+LEEESRRKNKEDR  + Q+AEAL++ RGRSTERG S    RGRSKS +KKN
Sbjct: 169  VFDDVAAAVLEEESRRKNKEDRQVNLQQAEALTVMRGRSTERGQSSG--RGRSKS-SKKN 225

Query: 1312 YRCYGCGKIGHLKRDCRNKKKSGDPELSNAQGCVANTSDDGEVLYGEASIVAEDRKRLAN 1133
              CY CGK GHLK+DC N  ++     SN QG VA+TSDDG  L  EASI  E RKR A+
Sbjct: 226  LTCYNCGKKGHLKKDCWNLAQN-----SNPQGNVASTSDDGSALCCEASIAREGRKRFAD 280

Query: 1132 VWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGIGTIKIKMFDGTVRTIQE 953
            +WLIDSGAT+HMTSR+EWFH YEPIS GSVY  DDH LEI GIGTIK+KM+DGTV+T+Q+
Sbjct: 281  IWLIDSGATYHMTSRKEWFHHYEPISGGSVYSCDDHALEIIGIGTIKLKMYDGTVQTVQD 340

Query: 952  VRHVKGLRKNLLSWGQLDDLGCEIRSKNGIMKIVRGALVLMQAEKIGPKLFMLKGETIQE 773
            VRHVKGL+KNLLS+G LD+   +I ++ G+MKI +GALV+M+ EKI   L+MLKGET+QE
Sbjct: 341  VRHVKGLKKNLLSYGILDNSATQIETQKGVMKIFQGALVVMKGEKIAANLYMLKGETLQE 400

Query: 772  ADACVASTSKGEESSMMWHLKLGHMSEQGLKILSDRKLLPGLKSVNLPFCEYCVTSKQHR 593
            A+A VA+ S   +S+++WH KLGHMS+QG+KIL ++KL+PGL  V+LP CE+C+TSKQHR
Sbjct: 401  AEASVAACSP--DSTLLWHQKLGHMSDQGMKILVEQKLIPGLTKVSLPLCEHCITSKQHR 458

Query: 592  LKFGRSGARSKYILDLIHSDVWESPDTSVGGAKYFVSFIDDYSRRCWVYPIKRKSDVFPV 413
            LKF  S +R K +L+L+HSDVW++P  S+GGAKYFVSFIDDYSRRCWVYPIK+KSDVF  
Sbjct: 459  LKFSTSNSRGKVVLELVHSDVWQAPVPSLGGAKYFVSFIDDYSRRCWVYPIKKKSDVFAT 518

Query: 412  FKEFKARVELESGKKIKCLRTDNGGEYTDGDFLVFCKQEGIDRQFTVAYTPQQNGVAERM 233
            FK FKARVEL+SGKKIKC RTDNGGEYT  +F  FCK+EGI RQFTVAYTPQQNGVAERM
Sbjct: 519  FKAFKARVELDSGKKIKCFRTDNGGEYTSEEFDDFCKKEGIKRQFTVAYTPQQNGVAERM 578

Query: 232  NRTLTEKIRAMLRTADLPNSFWAEAAKTACYVINRSPSTAIELKTPMEMWTGKPPDYSRL 53
            NRTL E+ RAMLR A L  SFWAEA  TACY++NR+PSTAIELKTPMEMWTGKP DYS L
Sbjct: 579  NRTLLERTRAMLRAAGLEKSFWAEAVNTACYLVNRAPSTAIELKTPMEMWTGKPVDYSNL 638

Query: 52   HSFGCPVYVMYNTQERT 2
            H FG  VY MYN QE T
Sbjct: 639  HIFGSIVYAMYNAQEIT 655


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  396 bits (1017), Expect = e-107
 Identities = 220/503 (43%), Positives = 303/503 (60%), Gaps = 18/503 (3%)
 Frame = -3

Query: 1483 EIAAAILEEESRRKNKEDRYTSSQKAEALSMTRGRSTE-------RGPSGSQNRGRSKSV 1325
            E+  A+  +E  +K      ++SQ  E+L + RGR  E       R  S S  RGRSKS 
Sbjct: 115  EVYDALHAKEKMKKMVPSEGSNSQP-ESL-VVRGRQQEKNTDNKSRDKSSSGYRGRSKSR 172

Query: 1324 NKKNYRCYGCGKIGHLKRDC---RNKKK-------SGDPELSNAQGCVANTSDDGEVLYG 1175
             +    C  C + GH   DC   +NK+K        G  E         +   D E+L  
Sbjct: 173  GRYK-SCKYCKRGGHDISDCWKLQNKEKHKGNYKPKGKQEEQGKAAVATDNKPDAELLVA 231

Query: 1174 EASIVAEDRKRLANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGIGTI 995
             A  V     + ++ WL+D+G T+HM   R+WF  YEP+  G+V MGD+ P ++AG+GTI
Sbjct: 232  YAGCV-----QTSDEWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTI 286

Query: 994  KIKMFDGTVRTIQEVRHVKGLRKNLLSWGQLDDLGCEIRSKNGIMKIVRGALVLMQAEKI 815
            +IKMFDG +RT+ +VRH+  L++NL+S   LD  G      +GI+K+ +G+LV+M+A+  
Sbjct: 287  QIKMFDGCIRTLSDVRHIPSLKRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADIK 346

Query: 814  GPKLFMLKGETIQEADACVASTSKGEESSMMWHLKLGHMSEQGLKILSDRKLLPGLKSVN 635
               L+ L+G TI      VA+ +    +S +WH++LGHMSE GL  LS R LL G     
Sbjct: 347  NADLYHLQGTTIV---GNVAAVTDSLSNSDLWHMRLGHMSEIGLAELSKRGLLDGQNIGK 403

Query: 634  LPFCEYCVTSKQHRLKFGRSGARSKYILDLIHSDVW-ESPDTSVGGAKYFVSFIDDYSRR 458
            L FCE+C+  K  R+KF  S   ++ ILD +HSD+W  +   S GGA+Y ++ +DDYSR+
Sbjct: 404  LKFCEHCIFGKHKRVKFTTSTHTTEGILDYVHSDLWGPARKRSFGGARYMMTIVDDYSRK 463

Query: 457  CWVYPIKRKSDVFPVFKEFKARVELESGKKIKCLRTDNGGEYTDGDFLVFCKQEGIDRQF 278
             W Y +K K + F VFKE+K  VE ++ +K+K LRTDNG E+    F  +C+ EGI R +
Sbjct: 464  VWPYFLKHKFEAFLVFKEWKTMVERQTERKVKVLRTDNGMEFCSRQFKSYCRSEGIVRHY 523

Query: 277  TVAYTPQQNGVAERMNRTLTEKIRAMLRTADLPNSFWAEAAKTACYVINRSPSTAIELKT 98
            TV++TPQQNGV ERMNRT+  K R ML  A LP  FWAEAA TACY+INRSPS AI+ KT
Sbjct: 524  TVSHTPQQNGVVERMNRTIISKARCMLSNAGLPRRFWAEAASTACYLINRSPSYAIDKKT 583

Query: 97   PMEMWTGKPPDYSRLHSFGCPVY 29
            P+EMW+G P +YS L  FGC  Y
Sbjct: 584  PIEMWSGSPANYSDLKVFGCTAY 606


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  392 bits (1006), Expect = e-106
 Identities = 217/503 (43%), Positives = 299/503 (59%), Gaps = 18/503 (3%)
 Frame = -3

Query: 1483 EIAAAILEEESRRKNKEDRYTSSQKAEALSMTRGRSTE-------RGPSGSQNRGRSKSV 1325
            E+  A+  +E  +K      ++SQ AE L + RGR  E       R  S S  RGRSKS 
Sbjct: 82   EVYDALHAKEKMKKMVPSEGSNSQ-AEGL-VVRGRQQEKNTNNKSRDKSSSIYRGRSKSR 139

Query: 1324 NKKNYRCYGCGKIGHLKRDC--------RNKK--KSGDPELSNAQGCVANTSDDGEVLYG 1175
             +    C  C + GH   +C        R +K    G  E       V +   D E+L  
Sbjct: 140  GRYK-SCKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEKSDAELLVA 198

Query: 1174 EASIVAEDRKRLANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGIGTI 995
             A        + ++ W++D+  T+HM   R+WF  YE +  G+V MGDD P E+AGIGT+
Sbjct: 199  YAGCA-----QTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTV 253

Query: 994  KIKMFDGTVRTIQEVRHVKGLRKNLLSWGQLDDLGCEIRSKNGIMKIVRGALVLMQAEKI 815
            +IKMFDG +RT+ +VRH+  L+++L+S   LD  G +    +GI+K+ +G+LV+M+A+  
Sbjct: 254  QIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIK 313

Query: 814  GPKLFMLKGETIQEADACVASTSKGEESSMMWHLKLGHMSEQGLKILSDRKLLPGLKSVN 635
               L+ L+G TI    A V+ +    +++ +WH++LGHMSE GL  LS R LL G     
Sbjct: 314  YANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGK 373

Query: 634  LPFCEYCVTSKQHRLKFGRSGARSKYILDLIHSDVW-ESPDTSVGGAKYFVSFIDDYSRR 458
            L FCE+C+  K  R+KF  S   ++ ILD +HSD+W  +  TS GGA+Y ++ +DDYSR+
Sbjct: 374  LKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRK 433

Query: 457  CWVYPIKRKSDVFPVFKEFKARVELESGKKIKCLRTDNGGEYTDGDFLVFCKQEGIDRQF 278
             W Y +K K   F VFKE+K  VE ++ +K+K LRTDNG E     F  +CK EGI R +
Sbjct: 434  VWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHY 493

Query: 277  TVAYTPQQNGVAERMNRTLTEKIRAMLRTADLPNSFWAEAAKTACYVINRSPSTAIELKT 98
            TV +TPQQNGVAERMNRT+  K R ML  A LP  FWAEA  TACY+INRSPS AI+ KT
Sbjct: 494  TVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKT 553

Query: 97   PMEMWTGKPPDYSRLHSFGCPVY 29
            P+E+W+G P +YS L  FGC  Y
Sbjct: 554  PIEVWSGSPANYSDLRVFGCTAY 576


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  389 bits (999), Expect = e-105
 Identities = 214/506 (42%), Positives = 299/506 (59%), Gaps = 18/506 (3%)
 Frame = -3

Query: 1492 VFDEIAAAILEEESRRKNKEDRYTSSQKAEALSMTRGRSTE-------RGPSGSQNRGRS 1334
            +  E+  A+  +E  +K      ++SQ AE L + RGR  E       R  S S  RGRS
Sbjct: 205  ILKEVYDALHAKEKMKKMVPSEGSNSQ-AEGL-VVRGRQQEKNTKNQSRDKSSSSYRGRS 262

Query: 1333 KSVNKKNYRCYGCGKIGHLKRDC---RNKKK-------SGDPELSNAQGCVANTSDDGEV 1184
            KS  +    C  C + GH   +C   ++K K        G  E       V +   D E+
Sbjct: 263  KSRGRYK-SCKYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTEL 321

Query: 1183 LYGEASIVAEDRKRLANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGI 1004
            L   A        + ++ W++D+  T+HM   R+WF  YE +  G+V MGDD P E+AGI
Sbjct: 322  LVAYAGCA-----QTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGI 376

Query: 1003 GTIKIKMFDGTVRTIQEVRHVKGLRKNLLSWGQLDDLGCEIRSKNGIMKIVRGALVLMQA 824
            GT++IKMFDG +RT+ +VRH+  L+++L+S   LD  G +    +GI+K+ +G+LV+M+A
Sbjct: 377  GTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKA 436

Query: 823  EKIGPKLFMLKGETIQEADACVASTSKGEESSMMWHLKLGHMSEQGLKILSDRKLLPGLK 644
            +     L+ L+G TI    A V+ +    +++ +WH++LGHMSE GL  LS R+LL G  
Sbjct: 437  DIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQS 496

Query: 643  SVNLPFCEYCVTSKQHRLKFGRSGARSKYILDLIHSDVW-ESPDTSVGGAKYFVSFIDDY 467
               L FCE+C+  K  R+KF  S   ++ ILD +HSD+W  +  TS GGA+Y ++ +DDY
Sbjct: 497  IGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDY 556

Query: 466  SRRCWVYPIKRKSDVFPVFKEFKARVELESGKKIKCLRTDNGGEYTDGDFLVFCKQEGID 287
            SR+ W Y +K K   F VFKE+K  VE ++ KK+K LRTDNG E+    F  +CK EGI 
Sbjct: 557  SRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIV 616

Query: 286  RQFTVAYTPQQNGVAERMNRTLTEKIRAMLRTADLPNSFWAEAAKTACYVINRSPSTAIE 107
              +TV +TPQQNGVAERMN  +  K R ML  ADLP  FWAEA  T CY+INRSPS A +
Sbjct: 617  HHYTVPHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATD 676

Query: 106  LKTPMEMWTGKPPDYSRLHSFGCPVY 29
             KTP+E+W+G P +YS L  FGC  Y
Sbjct: 677  KKTPIEVWSGSPANYSDLRVFGCTAY 702


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  389 bits (999), Expect = e-105
 Identities = 214/506 (42%), Positives = 299/506 (59%), Gaps = 18/506 (3%)
 Frame = -3

Query: 1492 VFDEIAAAILEEESRRKNKEDRYTSSQKAEALSMTRGRSTE-------RGPSGSQNRGRS 1334
            +  E+  A+  +E  +K      ++SQ AE L + RGR  E       R  S S  RGRS
Sbjct: 205  ILKEVYDALHAKEKMKKMVPSEGSNSQ-AEGL-VVRGRQQEKNTKNQSRDKSSSSYRGRS 262

Query: 1333 KSVNKKNYRCYGCGKIGHLKRDC---RNKKK-------SGDPELSNAQGCVANTSDDGEV 1184
            KS  +    C  C + GH   +C   ++K K        G  E       V +   D E+
Sbjct: 263  KSRGRYK-SCKYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTEL 321

Query: 1183 LYGEASIVAEDRKRLANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGI 1004
            L   A        + ++ W++D+  T+HM   R+WF  YE +  G+V MGDD P E+AGI
Sbjct: 322  LVAYAGCA-----QTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGI 376

Query: 1003 GTIKIKMFDGTVRTIQEVRHVKGLRKNLLSWGQLDDLGCEIRSKNGIMKIVRGALVLMQA 824
            GT++IKMFDG +RT+ +VRH+  L+++L+S   LD  G +    +GI+K+ +G+LV+M+A
Sbjct: 377  GTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKA 436

Query: 823  EKIGPKLFMLKGETIQEADACVASTSKGEESSMMWHLKLGHMSEQGLKILSDRKLLPGLK 644
            +     L+ L+G TI    A V+ +    +++ +WH++LGHMSE GL  LS R+LL G  
Sbjct: 437  DIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQS 496

Query: 643  SVNLPFCEYCVTSKQHRLKFGRSGARSKYILDLIHSDVW-ESPDTSVGGAKYFVSFIDDY 467
               L FCE+C+  K  R+KF  S   ++ ILD +HSD+W  +  TS GGA+Y ++ +DDY
Sbjct: 497  IGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDY 556

Query: 466  SRRCWVYPIKRKSDVFPVFKEFKARVELESGKKIKCLRTDNGGEYTDGDFLVFCKQEGID 287
            SR+ W Y +K K   F VFKE+K  VE ++ KK+K LRTDNG E+    F  +CK EGI 
Sbjct: 557  SRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIV 616

Query: 286  RQFTVAYTPQQNGVAERMNRTLTEKIRAMLRTADLPNSFWAEAAKTACYVINRSPSTAIE 107
              +TV +TPQQNGVAERMN  +  K R ML  ADLP  FWAEA  T CY+INRSPS A +
Sbjct: 617  HHYTVPHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATD 676

Query: 106  LKTPMEMWTGKPPDYSRLHSFGCPVY 29
             KTP+E+W+G P +YS L  FGC  Y
Sbjct: 677  KKTPIEVWSGSPANYSDLRVFGCTAY 702


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
            gi|108708632|gb|ABF96427.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1326

 Score =  389 bits (999), Expect = e-105
 Identities = 209/491 (42%), Positives = 291/491 (59%), Gaps = 12/491 (2%)
 Frame = -3

Query: 1465 LEEESRRKNKEDRYTSSQKAEALSMTRGRSTERGPSGS------QNRGRSKSVNKKNYRC 1304
            L+   + K       SS K EAL + RGRS +R  + S      Q+RGRSKS  KK   C
Sbjct: 180  LQNREKMKGMVQSDASSSKGEALQV-RGRSEQRTYNDSSDRDKSQSRGRSKSRGKKF--C 236

Query: 1303 YGCGKIGHLKRDC----RNKKKSGDPELSNAQGCVANTSDDGEVLYGEASIVAEDRKRLA 1136
              C K  H   +C      +K+  D + S      A  SD G+ L   A  VA   +   
Sbjct: 237  KYCKKKNHFIEECWKLQNKEKRKSDGKASVVTS--AENSDSGDCLVVFAGCVASHDE--- 291

Query: 1135 NVWLIDSGATWHMTSRREWFHKYEPISEGSVY-MGDDHPLEIAGIGTIKIKMFDGTVRTI 959
              W++D+  ++H+   R+WF  Y+ +  G V  MGDD+P EI GIG+++IK  DG  RT+
Sbjct: 292  --WILDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTL 349

Query: 958  QEVRHVKGLRKNLLSWGQLDDLGCEIRSKNGIMKIVRGALVLMQAEKIGPKLFMLKGETI 779
            ++VRH+ G+ +NL+S   LD  G +  S  G++K+ +G+LV M  +     L++L+G T+
Sbjct: 350  KDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTL 409

Query: 778  QEADACVASTSKGEESSMMWHLKLGHMSEQGLKILSDRKLLPGLKSVNLPFCEYCVTSKQ 599
              +    A +      + +WH++LGHMSE G+  L  R LL G     + FCE+CV  K 
Sbjct: 410  HGSVTAAAVSKDEPIKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGKMKFCEHCVFGKH 469

Query: 598  HRLKFGRSGARSKYILDLIHSDVW-ESPDTSVGGAKYFVSFIDDYSRRCWVYPIKRKSDV 422
             R+KF  S  R+K ILD +H+D+W  S    +GGA+Y ++ IDDYSR+ W Y +K K D 
Sbjct: 470  KRVKFNTSVHRTKGILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSRKVWPYFLKHKDDT 529

Query: 421  FPVFKEFKARVELESGKKIKCLRTDNGGEYTDGDFLVFCKQEGIDRQFTVAYTPQQNGVA 242
            F  FKE+K R+E ++ K++K LRTDNGGE+    F  +C++EGI R  T+ YTPQQNGVA
Sbjct: 530  FAAFKEWKVRIERQTEKEVKVLRTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVA 589

Query: 241  ERMNRTLTEKIRAMLRTADLPNSFWAEAAKTACYVINRSPSTAIELKTPMEMWTGKPPDY 62
            ERMNRT+  K R ML  A +   FWAEAA TACY+INRSPS  +  KTP+E+W+G P DY
Sbjct: 590  ERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEVWSGMPADY 649

Query: 61   SRLHSFGCPVY 29
            S+L  FGC  Y
Sbjct: 650  SQLRVFGCTAY 660


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  389 bits (998), Expect = e-105
 Identities = 210/491 (42%), Positives = 291/491 (59%), Gaps = 12/491 (2%)
 Frame = -3

Query: 1465 LEEESRRKNKEDRYTSSQKAEALSMTRGRSTERGPSGS------QNRGRSKSVNKKNYRC 1304
            L+   + K     Y SS K EAL + RGRS +R  + S      Q+RGRSKS  KK   C
Sbjct: 180  LQNREKMKGMVQSYASSSKGEALQV-RGRSEQRTYNDSNDHDKSQSRGRSKSRGKKF--C 236

Query: 1303 YGCGKIGHLKRDC----RNKKKSGDPELSNAQGCVANTSDDGEVLYGEASIVAEDRKRLA 1136
              C K  H   +C      +K+  D + S      A  SD G+ L   A  VA   +   
Sbjct: 237  KYCKKKNHFIEECWKLQNKEKRKSDGKASVVTS--AENSDSGDCLVVFAGYVASHDE--- 291

Query: 1135 NVWLIDSGATWHMTSRREWFHKYEPI-SEGSVYMGDDHPLEIAGIGTIKIKMFDGTVRTI 959
              W++D+  ++H+   R+WF  Y+ + +E  V MGDD+P EI GIG+++IK  DG  RT+
Sbjct: 292  --WILDTACSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGMTRTL 349

Query: 958  QEVRHVKGLRKNLLSWGQLDDLGCEIRSKNGIMKIVRGALVLMQAEKIGPKLFMLKGETI 779
            ++VRH+ G+ +NL+S   LD  G +     G++K+ +G+LV M  +     L++L+G T+
Sbjct: 350  KDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTL 409

Query: 778  QEADACVASTSKGEESSMMWHLKLGHMSEQGLKILSDRKLLPGLKSVNLPFCEYCVTSKQ 599
              +    A T      + +WH++LGHMSE G+  L  R LL G    N+ FCE+CV  K 
Sbjct: 410  HGSVTAAAVTKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKH 469

Query: 598  HRLKFGRSGARSKYILDLIHSDVW-ESPDTSVGGAKYFVSFIDDYSRRCWVYPIKRKSDV 422
             R+KF  S  R+K ILD +H+D+W  S   S+GGA+Y ++ IDDYSR+ W Y +K K D 
Sbjct: 470  KRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKEWPYFLKHKDDT 529

Query: 421  FPVFKEFKARVELESGKKIKCLRTDNGGEYTDGDFLVFCKQEGIDRQFTVAYTPQQNGVA 242
            F  FKE K  +E ++ K++K L TDNGGE+    F  +C++EGI R  T+ YTPQQNGVA
Sbjct: 530  FAAFKERKVMIERQTEKEVKVLCTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVA 589

Query: 241  ERMNRTLTEKIRAMLRTADLPNSFWAEAAKTACYVINRSPSTAIELKTPMEMWTGKPPDY 62
            ERMNRT+  K R ML  A +   FWAEAA TACY+INRSPS  +  KTP+E+W+G P DY
Sbjct: 590  ERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADY 649

Query: 61   SRLHSFGCPVY 29
            S+L  FGC  Y
Sbjct: 650  SQLRVFGCTAY 660


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  387 bits (993), Expect = e-104
 Identities = 216/493 (43%), Positives = 290/493 (58%), Gaps = 11/493 (2%)
 Frame = -3

Query: 1447 RKNKEDRYTSSQKAEALSMTRGRSTERGPSGSQNRGRSKSVNKKNYRCYGC---GKIGHL 1277
            R  +E+  + ++        RGRS  RG  G Q RG SKS  K   +  GC   G   H 
Sbjct: 157  RLEREEDSSQARGLYVRGKERGRSRNRG-GGFQGRGMSKSKGKGKGKKDGCFIYGSPDHW 215

Query: 1276 KRDCRNKKKSGDPELSNAQGCVANT-----SDDGEVLYGEASIVAEDRKRLANVWLIDSG 1112
            KR+C+  K+    ++S     +AN       +DGE+L    S  A         W +D+ 
Sbjct: 216  KRNCKQWKEK-KAQMSGESSQLANVVIGYNDEDGELLAISTSSGAPRH------WTLDTA 268

Query: 1111 ATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGIGTIKIKMFDGTVRTIQEVRHVKGL 932
             T+H  + R+WF  Y+  +  SV MG+D P  I GIG +KI+M DG VR +  VRH  GL
Sbjct: 269  CTFHTCAHRDWFDTYKEGNTRSVLMGNDSPSRIMGIGMVKIRMHDGIVRALGNVRHTPGL 328

Query: 931  RKNLLSWGQLDDLGCEIRSKNGIMKIVRGALVLMQAEKIGPKLFMLKGETIQEADACVAS 752
             +NL+S   +D +G   + +NG++K+ +G +V M+       ++ L G T++      A 
Sbjct: 329  NRNLISLSTMDRVGFWHKGQNGVLKVGKGQMVYMKGAIQPDNMYKLTGSTVEGG----AG 384

Query: 751  TSKGEESSMMWHLKLGHMSEQGLKILSDRKLLPGLKSVNLPFCEYCVTSKQHRLKFGRSG 572
                E+ + +W  +LGHMS++GL+ L  ++ L G+ S  L FC YC   KQ R+ F  S 
Sbjct: 385  VCTEEDKTELWRRRLGHMSQRGLQELHKKEQLDGVMSAALEFCRYCTLGKQTRVSFNLSS 444

Query: 571  A--RSKYILDLIHSDVW-ESPDTSVGGAKYFVSFIDDYSRRCWVYPIKRKSDVFPVFKEF 401
            +  +SK +LD IH+DVW  S   S GGA+YFVSFIDD+SR+ W++ +K K++VF  FKE+
Sbjct: 445  SENKSKGVLDYIHTDVWGPSATISKGGARYFVSFIDDFSRKVWIFFMKTKNEVFTKFKEW 504

Query: 400  KARVELESGKKIKCLRTDNGGEYTDGDFLVFCKQEGIDRQFTVAYTPQQNGVAERMNRTL 221
            KA V  ++G+KIKCLR+DNGGEY D  FL  CK EGI R FTV  +PQQNGVAERMNRTL
Sbjct: 505  KAEVGNQTGRKIKCLRSDNGGEYRDKKFLQLCKDEGITRHFTVKKSPQQNGVAERMNRTL 564

Query: 220  TEKIRAMLRTADLPNSFWAEAAKTACYVINRSPSTAIELKTPMEMWTGKPPDYSRLHSFG 41
             EK R+M   A LP  FWAEAA  ACY+INRSPS AI  K   E+W+GKP DYS L  FG
Sbjct: 565  MEKERSMRFHAGLPEEFWAEAANHACYLINRSPSRAINFKCAEEVWSGKPVDYSNLRVFG 624

Query: 40   CPVYVMYNTQERT 2
            C  Y      ERT
Sbjct: 625  CSAYAHIPKDERT 637


>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 813

 Score =  384 bits (987), Expect = e-104
 Identities = 207/492 (42%), Positives = 305/492 (61%), Gaps = 6/492 (1%)
 Frame = -3

Query: 1486 DEIAAAILEEESRRKNKEDRYTSSQKAEALSMTRGRSTERGPSGSQNRGRSKSVNK--KN 1313
            D + +A+   E R+++K    T S  +E   + RGR   +     + RG SKS  +    
Sbjct: 113  DAVCSALYSHELRKQDK--MRTKSTTSEEALVIRGRQQSQT---KERRGMSKSKGRVVAK 167

Query: 1312 YRCYGCGKIGHLKRDC-RNKKKSGDPELSNAQGCVANTSDDGEVLYGEASIVAEDRKRLA 1136
              C  C + GH K+DC + +KK   P+ +N   C ++   D  +      IV+       
Sbjct: 168  DECAFCHEKGHWKKDCPKLQKKEKVPQDANVAECKSDVESDISL------IVSLSASSYP 221

Query: 1135 NVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGIGTIKIKMFDGTVRTIQ 956
            + W++DSG T+HM   R+WF +++ +  G VYMG+D+P +  GIG+IK++  DG+ R ++
Sbjct: 222  DEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGIGSIKLRNHDGSTRILR 281

Query: 955  EVRHVKGLRKNLLSWGQLDDLGCEIRSKNGIMKIVRGALVLMQAEKIGPKLFMLKGETIQ 776
            +VR+V  L+KNL+S G L+  G  +  ++GI+K   GALV+++   +   L+  +G T+ 
Sbjct: 282  DVRYVPKLKKNLISLGALESKGLVVTMRDGILKATLGALVMLKGV-MKNNLYYYQGSTVV 340

Query: 775  EADACVASTSKGE-ESSMMWHLKLGHMSEQGLKILSDRKLLPGLKSVNLPFCEYCVTSKQ 599
               A   S+SK + E++ +WH++LGH  E+ L+IL+ + LL G K+  L FCE+CV  KQ
Sbjct: 341  GTVAAATSSSKKDAEAAKLWHMRLGHAGEKSLQILTKQGLLKGTKACKLEFCEHCVLGKQ 400

Query: 598  HRLKFGRSGARSKYILDLIHSDVWESPDT-SVGGAKYFVSFIDDYSRRCWVYPIKRKSDV 422
             R+KFG +   +K ILD +HSDVW    T S+GG  YFV+F+DD+SRR WV+ +K K+DV
Sbjct: 401  RRVKFGTAIHNTKGILDYVHSDVWGPAKTPSIGGRHYFVTFVDDFSRRVWVFTMKNKNDV 460

Query: 421  FPVFKEFKARVELESGKKIKCLRTDNGGEYTDGDFLVFCKQEGIDRQFTVAYTPQQNGVA 242
              +F ++KA VE  +G+KIK L+TDNGGEY    FL  C+  GI R FTV  TPQQNGV+
Sbjct: 461  LEIFLKWKAEVENHTGRKIKVLQTDNGGEYKSDPFLNVCQDCGIVRHFTVRKTPQQNGVS 520

Query: 241  ERMNRTLTEKIRAMLRTADLPNSFWAEAAKTACYVINRSPSTAIELKTPMEMWTGKP-PD 65
            ERMN+TL EK+  ML  A+L   FWAEA   A +++NR PS+AI+ KTP+E+W+GKP  D
Sbjct: 521  ERMNKTLVEKVCCMLSNAELGREFWAEAVTYAQHLVNRLPSSAIDGKTPLEVWSGKPATD 580

Query: 64   YSRLHSFGCPVY 29
            Y  LH FG   Y
Sbjct: 581  YDSLHVFGSIAY 592


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  384 bits (985), Expect = e-103
 Identities = 203/496 (40%), Positives = 291/496 (58%), Gaps = 10/496 (2%)
 Frame = -3

Query: 1465 LEEESRRKNKEDRYTSSQKAEALSMTRGRSTERGPSGSQNRGRSKSVNKKNYR----CYG 1298
            L+   + K       SS K EAL + +GRS +R  + S +R +SKS  +   R    C  
Sbjct: 180  LQNREKMKGMVQSDASSSKGEALQV-KGRSEQRTYNDSNDRDKSKSRGRSKSRGKKFCKY 238

Query: 1297 CGKIGHLKRDC----RNKKKSGDPELSNAQGCVANTSDDGEVLYGEASIVAEDRKRLANV 1130
            C K  H  ++C      +K+  D + S      A  SD G+ L   A  VA   +     
Sbjct: 239  CKKKIHFIKECWKLQNKEKRKSDGKASVVTS--AKNSDSGDCLVVFAGCVASHDE----- 291

Query: 1129 WLIDSGATWHMTSRREWFHKYEPISEGSVY-MGDDHPLEIAGIGTIKIKMFDGTVRTIQE 953
            W++D+  ++H+   R+WF  Y+ +  G V  MG+D+P EI GIG+++IK  DG  RT+++
Sbjct: 292  WILDTACSFHIYINRDWFSSYKSVQNGDVVRMGNDNPREIVGIGSVQIKTHDGITRTLKD 351

Query: 952  VRHVKGLRKNLLSWGQLDDLGCEIRSKNGIMKIVRGALVLMQAEKIGPKLFMLKGETIQE 773
            VRH+ G+ +NL+S   LD  G +     G++K+ +G+LV M  +     L++L+G T+  
Sbjct: 352  VRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHG 411

Query: 772  ADACVASTSKGEESSMMWHLKLGHMSEQGLKILSDRKLLPGLKSVNLPFCEYCVTSKQHR 593
            +    A T      + +WH++LGHMSE G+  L  R LL G    N+ FCE CV  K  R
Sbjct: 412  SVTAAAVTKDEPNKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCERCVFGKHKR 471

Query: 592  LKFGRSGARSKYILDLIHSDVW-ESPDTSVGGAKYFVSFIDDYSRRCWVYPIKRKSDVFP 416
            +KF  S  R+K ILD +H+D+W  S   S+GGA+Y ++ IDDYSR+ W Y +K K D F 
Sbjct: 472  VKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFA 531

Query: 415  VFKEFKARVELESGKKIKCLRTDNGGEYTDGDFLVFCKQEGIDRQFTVAYTPQQNGVAER 236
             FKE+K  +E ++ K++K LRTDN GE+    F  +C++EGI R  T+ YTPQQNGVAER
Sbjct: 532  AFKEWKVMIERQTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAER 591

Query: 235  MNRTLTEKIRAMLRTADLPNSFWAEAAKTACYVINRSPSTAIELKTPMEMWTGKPPDYSR 56
            MNRT+  K R ML  A +   FWAEAA TACY+INRSPS  +  KTP+E+W+G P DYS+
Sbjct: 592  MNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQ 651

Query: 55   LHSFGCPVYVMYNTQE 8
            L  FGC  Y   + ++
Sbjct: 652  LRVFGCTAYAHVDNEK 667


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  383 bits (984), Expect = e-103
 Identities = 211/503 (41%), Positives = 297/503 (59%), Gaps = 18/503 (3%)
 Frame = -3

Query: 1483 EIAAAILEEESRRKNKEDRYTSSQKAEALSMTRGRSTE-------RGPSGSQNRGRSKSV 1325
            E+  A+  +E  +K      ++SQ AE L +  GR  E       R  S S  RGRSKS 
Sbjct: 380  EVYDALHVKEKMKKMVPSEGSNSQ-AEGL-IVWGRQQEKNTKNQSRDKSSSSYRGRSKSR 437

Query: 1324 NKKNYRCYGCGKIGHLKRDC---RNKKK-------SGDPELSNAQGCVANTSDDGEVLYG 1175
             +    C  C + GH   +C    +K K        G  E       V +   D E+L  
Sbjct: 438  GRYK-SCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVA 496

Query: 1174 EASIVAEDRKRLANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGIGTI 995
             A        + ++ W++++   +HM   R+WF  YE +  G+V MGDD P E+AGIGT+
Sbjct: 497  YAGCA-----QTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTV 551

Query: 994  KIKMFDGTVRTIQEVRHVKGLRKNLLSWGQLDDLGCEIRSKNGIMKIVRGALVLMQAEKI 815
            +IKMFDG +RT+ +VRH+  L+++L+S   LD  G +    +GI+K+ +G+LV+M+A+  
Sbjct: 552  QIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIK 611

Query: 814  GPKLFMLKGETIQEADACVASTSKGEESSMMWHLKLGHMSEQGLKILSDRKLLPGLKSVN 635
               L+ L+G TI    A V+ +    +++ +WH++LGHM+E GL  LS R LL G     
Sbjct: 612  SANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGK 671

Query: 634  LPFCEYCVTSKQHRLKFGRSGARSKYILDLIHSDVW-ESPDTSVGGAKYFVSFIDDYSRR 458
            L FCE+C+  K  R+KF  S   ++ ILD +HSD+W  +  TS GG +Y ++ +DDYSR+
Sbjct: 672  LKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRK 731

Query: 457  CWVYPIKRKSDVFPVFKEFKARVELESGKKIKCLRTDNGGEYTDGDFLVFCKQEGIDRQF 278
             W Y +K K   F VFKE+K  VE ++ +K+K LRTDNG E+    F  +CK EGI R +
Sbjct: 732  VWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHY 791

Query: 277  TVAYTPQQNGVAERMNRTLTEKIRAMLRTADLPNSFWAEAAKTACYVINRSPSTAIELKT 98
            TV +TPQQNGVAERMNRT+  K R +L  A LP  FWAEA  TACY+INRSPS AI+ KT
Sbjct: 792  TVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKT 851

Query: 97   PMEMWTGKPPDYSRLHSFGCPVY 29
            P+E+W+G P +YS L  FGC  Y
Sbjct: 852  PIEVWSGSPANYSDLRVFGCTAY 874


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  383 bits (984), Expect = e-103
 Identities = 211/503 (41%), Positives = 297/503 (59%), Gaps = 18/503 (3%)
 Frame = -3

Query: 1483 EIAAAILEEESRRKNKEDRYTSSQKAEALSMTRGRSTE-------RGPSGSQNRGRSKSV 1325
            E+  A+  +E  +K      ++SQ AE L +  GR  E       R  S S  RGRSKS 
Sbjct: 173  EVYDALHVKEKMKKMVPSEGSNSQ-AEGL-IVWGRQQEKNTKNQSRDKSSSSYRGRSKSR 230

Query: 1324 NKKNYRCYGCGKIGHLKRDC---RNKKK-------SGDPELSNAQGCVANTSDDGEVLYG 1175
             +    C  C + GH   +C    +K K        G  E       V +   D E+L  
Sbjct: 231  GRYK-SCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVA 289

Query: 1174 EASIVAEDRKRLANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGIGTI 995
             A        + ++ W++++   +HM   R+WF  YE +  G+V MGDD P E+AGIGT+
Sbjct: 290  YAGCA-----QTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTV 344

Query: 994  KIKMFDGTVRTIQEVRHVKGLRKNLLSWGQLDDLGCEIRSKNGIMKIVRGALVLMQAEKI 815
            +IKMFDG +RT+ +VRH+  L+++L+S   LD  G +    +GI+K+ +G+LV+M+A+  
Sbjct: 345  QIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIK 404

Query: 814  GPKLFMLKGETIQEADACVASTSKGEESSMMWHLKLGHMSEQGLKILSDRKLLPGLKSVN 635
               L+ L+G TI    A V+ +    +++ +WH++LGHM+E GL  LS R LL G     
Sbjct: 405  SANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGK 464

Query: 634  LPFCEYCVTSKQHRLKFGRSGARSKYILDLIHSDVW-ESPDTSVGGAKYFVSFIDDYSRR 458
            L FCE+C+  K  R+KF  S   ++ ILD +HSD+W  +  TS GG +Y ++ +DDYSR+
Sbjct: 465  LKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRK 524

Query: 457  CWVYPIKRKSDVFPVFKEFKARVELESGKKIKCLRTDNGGEYTDGDFLVFCKQEGIDRQF 278
             W Y +K K   F VFKE+K  VE ++ +K+K LRTDNG E+    F  +CK EGI R +
Sbjct: 525  VWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHY 584

Query: 277  TVAYTPQQNGVAERMNRTLTEKIRAMLRTADLPNSFWAEAAKTACYVINRSPSTAIELKT 98
            TV +TPQQNGVAERMNRT+  K R +L  A LP  FWAEA  TACY+INRSPS AI+ KT
Sbjct: 585  TVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKT 644

Query: 97   PMEMWTGKPPDYSRLHSFGCPVY 29
            P+E+W+G P +YS L  FGC  Y
Sbjct: 645  PIEVWSGSPANYSDLRVFGCTAY 667


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  383 bits (984), Expect = e-103
 Identities = 206/487 (42%), Positives = 292/487 (59%), Gaps = 1/487 (0%)
 Frame = -3

Query: 1486 DEIAAAILEEESRRKNKEDRYTSSQKAEALSMTRGRSTERGPSGSQNRGRSKSVNKKNYR 1307
            +E+ +A+   E R K               S  +GR       G +N+  SK   K +  
Sbjct: 170  EEVRSALHSRELRHKANGTSTDIQPSGLFTSSRKGRKN----GGKKNKPMSKGA-KPDDV 224

Query: 1306 CYGCGKIGHLKRDCRNKKKSGDPELSNAQGCVANTSDDGEVLYGEASIVAEDRKRLANVW 1127
            C  C + GH K DC  KKK  + +  +A     +T+ + ++     ++VA++    ++VW
Sbjct: 225  CNYCKEKGHWKFDCPKKKKQSEKQSVSAAVAEEDTNSEEDI-----ALVADEHTHHSDVW 279

Query: 1126 LIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGIGTIKIKMFDGTVRTIQEVR 947
            ++DSGA++H+  RREWF  YE +  GS+ M +    ++ G G+IKI+  DG+  T+ EVR
Sbjct: 280  VLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVR 339

Query: 946  HVKGLRKNLLSWGQLDDLGCEIRSKNGIMKIVRGALVLMQAEKIGPKLFMLKGETIQEAD 767
            HV  + KNL+S   LD  G     K+G++++ +G+ ++++    G  L+ L+G T+  + 
Sbjct: 340  HVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGT-LYFLQGSTVTGSA 398

Query: 766  ACVASTSKGEESSMMWHLKLGHMSEQGLKILSDRKLLPGLKSVNLPFCEYCVTSKQHRLK 587
               +S    ++ + +WH++LGHM E+G++ILS   LL G K  +L FCE+CV  K HR K
Sbjct: 399  HVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNK 458

Query: 586  FGRSGARSKYILDLIHSDVWESPDT-SVGGAKYFVSFIDDYSRRCWVYPIKRKSDVFPVF 410
            F ++  R+K  LD IHSD W      S+GG ++FVS IDDYSR  WVY +K KS+ F  F
Sbjct: 459  FPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKF 518

Query: 409  KEFKARVELESGKKIKCLRTDNGGEYTDGDFLVFCKQEGIDRQFTVAYTPQQNGVAERMN 230
            KE+K  +E ++GKKIK LRTDNG E+   +F  FCK EGI R  TV  TPQQNGVAERMN
Sbjct: 519  KEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMN 578

Query: 229  RTLTEKIRAMLRTADLPNSFWAEAAKTACYVINRSPSTAIELKTPMEMWTGKPPDYSRLH 50
            +TL E+ R ML  A L   FWAEA  TACY+INR P T I+ KTPMEMW+GK  DYS L 
Sbjct: 579  QTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLK 638

Query: 49   SFGCPVY 29
            +FGC  Y
Sbjct: 639  AFGCTAY 645