BLASTX nr result
ID: Forsythia22_contig00013273
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia22_contig00013273
(3916 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 206 0.0
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 197 0.0
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 205 0.0
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 186 e-176
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 208 e-167
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 204 e-147
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 172 e-143
ref|XP_010676254.1| PREDICTED: uncharacterized protein LOC104892... 161 e-128
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 165 e-126
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 187 e-123
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 187 e-123
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 199 e-117
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 160 e-112
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 145 e-111
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 199 e-109
gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris] 139 e-107
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 145 e-107
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 150 e-107
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc... 185 e-106
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 148 e-106
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 206 bits (524), Expect(6) = 0.0
Identities = 97/156 (62%), Positives = 121/156 (77%)
Frame = +3
Query: 2868 KTRDGVIGYVDSDFTGDLEKIRSITGYVFTIGGCAISWKVTLQTIVALSTTEAEYMAITE 3047
++ DG++GYVDSDF GDL++ RS+TGYVFT+GGCA+SWK +LQ VALSTTEAEYMAI+E
Sbjct: 1084 RSSDGLVGYVDSDFAGDLDRRRSLTGYVFTVGGCAVSWKASLQATVALSTTEAEYMAISE 1143
Query: 3048 ACRETILLK*LCEELSKDLQITTVFCDS*SAIFLTKDRMFHERKKHIDVRYHFCHDIISC 3227
AC+E I L+ L EL +FCDS SAI LTKD+MFHER KHID+RYHF +I+
Sbjct: 1144 ACKEVIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDLRYHFIRGVIAE 1203
Query: 3228 GNIVVCKISTHDNPVNLMIKTRPIAKFEHCLDLIGI 3335
G++ VCKISTHDNPV++M K P KFE C L+G+
Sbjct: 1204 GDVKVCKISTHDNPVDMMTKPVPATKFELCSSLVGV 1239
Score = 188 bits (477), Expect(6) = 0.0
Identities = 96/158 (60%), Positives = 116/158 (73%)
Frame = +3
Query: 2007 VPGVDFIDVFSPVENHSLIRALLGIVAMHNFELQQLDVKTSFLHGEYEEEIYMH*PEGFI 2186
+PG+DF DVFSPV HS IR LL IVAMH++EL+Q+DVKT+FLHGE EE+IYM PEGF+
Sbjct: 801 IPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFV 860
Query: 2187 VSEKENYVCLLKKSLYGLKQSHRQYYKRFDSVMITHDFRRNSYDSCVYFQMSAVGSFXXX 2366
V KEN VC LKKSLYGLKQS RQ+YKRFDS M++ FRR++YDSCVY ++ GS
Sbjct: 861 VPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKV-VDGSAIYL 919
Query: 2367 XXXXXXXXIAAKHKEEIKKVKVQFSKEFEIKRLRSCKE 2480
IAAK K EI K+K Q S EFE+K L + K+
Sbjct: 920 LLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKK 957
Score = 167 bits (424), Expect(6) = 0.0
Identities = 85/126 (67%), Positives = 99/126 (78%)
Frame = +1
Query: 2461 DLEVVKKILGMEIQIDRITGKLYLSRKGYI*KVICRFNMQNAKSVSTPLAAHFRLSSTLS 2640
DL KKILGMEI +R +GKLYLS+K YI KV+ RFNM +AK VST LAAHFRLSS L
Sbjct: 951 DLGAAKKILGMEITRERHSGKLYLSQKCYIEKVLHRFNMHDAKLVSTLLAAHFRLSSDLC 1010
Query: 2641 PQSTDEIDYMSRVPYSSALE*FMYAMVCSHQDLSYDVGAISTYIINPSKEHWKAVQWIFR 2820
PQS +I+YMSRVPYSSA+ MYAMVCS DLS+ + +S Y+ NP KEHWKAVQWIFR
Sbjct: 1011 PQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFR 1070
Query: 2821 YLRGST 2838
YLRG++
Sbjct: 1071 YLRGTS 1076
Score = 146 bits (368), Expect(6) = 0.0
Identities = 68/109 (62%), Positives = 84/109 (77%)
Frame = +3
Query: 1239 LINHYPSSVVDKKTP*EVWSGIHANYSNLKIFGCSAYAHVDNGKLETRYIKCVFLDYKIN 1418
LIN PS +DKKTP EVWSG ANYS+L++FGC+AYAHVDNGKLE R IKC+FL Y
Sbjct: 540 LINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSG 599
Query: 1419 VKGYKLWCPET*KVIISRDVIFDENAMIHHLPSRDYSDKIQQKSNTQME 1565
VKGYKLWCPET KV+ISR+V+F E+ M+H PS + + Q+K + Q+E
Sbjct: 600 VKGYKLWCPETKKVVISRNVVFHESIMLHDKPSTNVPVESQEKVSVQVE 648
Score = 69.3 bits (168), Expect(6) = 0.0
Identities = 38/88 (43%), Positives = 52/88 (59%)
Frame = +1
Query: 1744 LNVTDDIDSSEEHFTYLVAISCDVLSRWNIAMQEELESLHKNGT*DLLRLSKDKKVVRYK 1923
L+V ++I+ + E TY AI D +RW AM +E+ESL KN + +L +L K+KK +R K
Sbjct: 713 LSVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPIRCK 772
Query: 1924 WXXXXXXXXXXXXXARYKVRLVAKGNSK 2007
W ARYK RLVAKG S+
Sbjct: 773 WIFKRKEGMSPSDEARYKARLVAKGYSQ 800
Score = 30.0 bits (66), Expect(6) = 0.0
Identities = 13/26 (50%), Positives = 22/26 (84%), Gaps = 1/26 (3%)
Frame = +2
Query: 1670 IAKNKPRRDIIPPKRY-AKADLVSYA 1744
IAK++P+R+ PP+RY +A++V+YA
Sbjct: 687 IAKDRPKRNTKPPRRYIEEANIVAYA 712
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 197 bits (501), Expect(6) = 0.0
Identities = 94/154 (61%), Positives = 116/154 (75%)
Frame = +3
Query: 2868 KTRDGVIGYVDSDFTGDLEKIRSITGYVFTIGGCAISWKVTLQTIVALSTTEAEYMAITE 3047
++RDG++GYVDSDF GDL++ RS+ GYVFTIGGCA+SWK +LQ VALSTTEAEYMAI+E
Sbjct: 1382 RSRDGLVGYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISE 1441
Query: 3048 ACRETILLK*LCEELSKDLQITTVFCDS*SAIFLTKDRMFHERKKHIDVRYHFCHDIISC 3227
AC+E I L+ L L +FCDS SAI LTKD+MFHER KHIDVRYHF +I+
Sbjct: 1442 ACKEAIWLRGLYTVLCAVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHFIRGLIAE 1501
Query: 3228 GNIVVCKISTHDNPVNLMIKTRPIAKFEHCLDLI 3329
G++ +CKIS HDNP ++M K P KFE C L+
Sbjct: 1502 GDVKICKISIHDNPADMMTKPVPATKFELCSSLV 1535
Score = 186 bits (473), Expect(6) = 0.0
Identities = 95/158 (60%), Positives = 116/158 (73%)
Frame = +3
Query: 2007 VPGVDFIDVFSPVENHSLIRALLGIVAMHNFELQQLDVKTSFLHGEYEEEIYMH*PEGFI 2186
+PG+DF DVFSPV HS IR LL IVAMH++EL+Q+DVKT+FLHGE EE+IYM P+GF+
Sbjct: 1099 IPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPKGFV 1158
Query: 2187 VSEKENYVCLLKKSLYGLKQSHRQYYKRFDSVMITHDFRRNSYDSCVYFQMSAVGSFXXX 2366
V KEN VC LKKSLYGLKQS RQ+YKRFDS M++ FRR++YDSCVY ++ GS
Sbjct: 1159 VPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKV-VDGSAIYL 1217
Query: 2367 XXXXXXXXIAAKHKEEIKKVKVQFSKEFEIKRLRSCKE 2480
IAAK K EI K+K Q S EFE+K L + K+
Sbjct: 1218 LLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKK 1255
Score = 169 bits (429), Expect(6) = 0.0
Identities = 86/126 (68%), Positives = 99/126 (78%)
Frame = +1
Query: 2461 DLEVVKKILGMEIQIDRITGKLYLSRKGYI*KVICRFNMQNAKSVSTPLAAHFRLSSTLS 2640
DL KKILGMEI R + KLYLS+KGYI KV+ RFNM +AK VSTPLAAHFRLSS L
Sbjct: 1249 DLGAAKKILGMEITRKRHSFKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLC 1308
Query: 2641 PQSTDEIDYMSRVPYSSALE*FMYAMVCSHQDLSYDVGAISTYIINPSKEHWKAVQWIFR 2820
PQS +I+YMSRVPYSSA+ MYAMVCS DLS+ + +S Y+ NP KEHWKAVQWIFR
Sbjct: 1309 PQSDYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFR 1368
Query: 2821 YLRGST 2838
YLRG++
Sbjct: 1369 YLRGTS 1374
Score = 147 bits (372), Expect(6) = 0.0
Identities = 68/109 (62%), Positives = 85/109 (77%)
Frame = +3
Query: 1239 LINHYPSSVVDKKTP*EVWSGIHANYSNLKIFGCSAYAHVDNGKLETRYIKCVFLDYKIN 1418
LIN PS +DKKTP EVWSG ANYS+L++FGC+AYAHVDNGKLE R IKC+FL Y
Sbjct: 838 LINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSG 897
Query: 1419 VKGYKLWCPET*KVIISRDVIFDENAMIHHLPSRDYSDKIQQKSNTQME 1565
VKGYKLWCPET KV+ISR+V+F E+ M+H PS + + Q+K++ Q+E
Sbjct: 898 VKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVE 946
Score = 72.4 bits (176), Expect(6) = 0.0
Identities = 38/88 (43%), Positives = 53/88 (60%)
Frame = +1
Query: 1744 LNVTDDIDSSEEHFTYLVAISCDVLSRWNIAMQEELESLHKNGT*DLLRLSKDKKVVRYK 1923
L+V ++I+ + E TY AI D +RW AM +E+ESL KN T +L++L K+KK +R K
Sbjct: 1011 LSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCK 1070
Query: 1924 WXXXXXXXXXXXXXARYKVRLVAKGNSK 2007
W ARYK RL+AKG S+
Sbjct: 1071 WIFKRKEGISSSDEARYKARLIAKGYSQ 1098
Score = 31.6 bits (70), Expect(6) = 0.0
Identities = 14/26 (53%), Positives = 23/26 (88%), Gaps = 1/26 (3%)
Frame = +2
Query: 1670 IAKNKPRRDIIPPKRY-AKADLVSYA 1744
IAK++P+R+I PP+RY +A++V+YA
Sbjct: 985 IAKDRPKRNIKPPQRYIEEANIVAYA 1010
Score = 60.8 bits (146), Expect = 8e-06
Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = -1
Query: 586 VRITTTMKGCDAISIRTCQELEGPMCDY-LSSQYEKHGVAE*MNRTLMEKVCCMLSNSGL 410
+R M+ C I C+ EG + Y + +++GVAE MNRT++ K C+LSN+GL
Sbjct: 765 LRTDNGMEFCSKIFKSYCKS-EGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGL 823
Query: 409 PKTFWAETISTTCFI 365
PK FWAE +ST C++
Sbjct: 824 PKQFWAEAVSTACYL 838
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 205 bits (522), Expect(6) = 0.0
Identities = 97/156 (62%), Positives = 119/156 (76%)
Frame = +3
Query: 2868 KTRDGVIGYVDSDFTGDLEKIRSITGYVFTIGGCAISWKVTLQTIVALSTTEAEYMAITE 3047
++RDG++GYVDSDF GDL++ RS+TGYVFTIGGCA+SWK +LQ VALSTTE EYMAI+E
Sbjct: 1054 RSRDGLVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEVEYMAISE 1113
Query: 3048 ACRETILLK*LCEELSKDLQITTVFCDS*SAIFLTKDRMFHERKKHIDVRYHFCHDIISC 3227
AC+E I L+ L EL +FCDS SAI TKD+MFHER KHIDVRYHF +I+
Sbjct: 1114 ACKEAIWLRGLYTELCGVTSCINIFCDSQSAICFTKDQMFHERTKHIDVRYHFIRGVIAE 1173
Query: 3228 GNIVVCKISTHDNPVNLMIKTRPIAKFEHCLDLIGI 3335
G++ VCKISTHDNP ++M K P KFE C L+G+
Sbjct: 1174 GDVKVCKISTHDNPADMMTKPVPTTKFELCSSLVGV 1209
Score = 182 bits (461), Expect(6) = 0.0
Identities = 94/158 (59%), Positives = 115/158 (72%)
Frame = +3
Query: 2007 VPGVDFIDVFSPVENHSLIRALLGIVAMHNFELQQLDVKTSFLHGEYEEEIYMH*PEGFI 2186
+PG+DF DVFSPV HS IR LL IVA+H++EL+Q+DVKT+FLHGE EE+IYM PEGF+
Sbjct: 771 IPGIDFNDVFSPVLKHSSIRTLLSIVAVHDYELEQMDVKTAFLHGELEEDIYMEQPEGFV 830
Query: 2187 VSEKENYVCLLKKSLYGLKQSHRQYYKRFDSVMITHDFRRNSYDSCVYFQMSAVGSFXXX 2366
V KEN V LKKSLYGLKQS RQ+YKRFDS M + FRR++YDSCVY ++ GS
Sbjct: 831 VPGKENLVYRLKKSLYGLKQSPRQWYKRFDSFMFSQKFRRSNYDSCVYLKV-VDGSSIYL 889
Query: 2367 XXXXXXXXIAAKHKEEIKKVKVQFSKEFEIKRLRSCKE 2480
IAAK K EI+K+K Q S EFE+K L + K+
Sbjct: 890 LLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKK 927
Score = 167 bits (423), Expect(6) = 0.0
Identities = 83/126 (65%), Positives = 98/126 (77%)
Frame = +1
Query: 2461 DLEVVKKILGMEIQIDRITGKLYLSRKGYI*KVICRFNMQNAKSVSTPLAAHFRLSSTLS 2640
DL KKILGMEI +R +GKLYLS+KGYI KV+ RFNM +AK VSTPLAAHFRLSS L
Sbjct: 921 DLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLC 980
Query: 2641 PQSTDEIDYMSRVPYSSALE*FMYAMVCSHQDLSYDVGAISTYIINPSKEHWKAVQWIFR 2820
PQS +I+YMSRVPY S + MYAMVCS DLS+ + +S Y+ NP KEHWK VQWIF+
Sbjct: 981 PQSDYDIEYMSRVPYLSVVGSLMYAMVCSRLDLSHALSVVSRYMANPGKEHWKVVQWIFK 1040
Query: 2821 YLRGST 2838
YLRG++
Sbjct: 1041 YLRGTS 1046
Score = 135 bits (340), Expect(6) = 0.0
Identities = 61/100 (61%), Positives = 79/100 (79%)
Frame = +3
Query: 1266 VDKKTP*EVWSGIHANYSNLKIFGCSAYAHVDNGKLETRYIKCVFLDYKINVKGYKLWCP 1445
+DKKTP EVWSG ANYS+L++FGC+AYAHVDNGKLE R IKC+FL Y VK YKLWCP
Sbjct: 519 IDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKDYKLWCP 578
Query: 1446 ET*KVIISRDVIFDENAMIHHLPSRDYSDKIQQKSNTQME 1565
+T KV+ISR+V+F E+ M+H PS + + Q+K++ Q+E
Sbjct: 579 KTKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVE 618
Score = 72.8 bits (177), Expect(6) = 0.0
Identities = 39/88 (44%), Positives = 53/88 (60%)
Frame = +1
Query: 1744 LNVTDDIDSSEEHFTYLVAISCDVLSRWNIAMQEELESLHKNGT*DLLRLSKDKKVVRYK 1923
L+V ++I+ + E TY AI D +RW AM +E+ESL KN T +L++L K+KK +R K
Sbjct: 683 LSVAEEIEGNAEPSTYSEAIVSDGCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCK 742
Query: 1924 WXXXXXXXXXXXXXARYKVRLVAKGNSK 2007
W ARYK RLVAKG S+
Sbjct: 743 WIFKRKKGMSPSDEARYKARLVAKGYSQ 770
Score = 33.1 bits (74), Expect(6) = 0.0
Identities = 15/26 (57%), Positives = 23/26 (88%), Gaps = 1/26 (3%)
Frame = +2
Query: 1670 IAKNKPRRDIIPPKRY-AKADLVSYA 1744
IAK+KP+R+I PP+RY +A++V+YA
Sbjct: 657 IAKDKPKRNIKPPRRYIEEANIVAYA 682
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 186 bits (473), Expect(6) = e-176
Identities = 95/158 (60%), Positives = 117/158 (74%)
Frame = +3
Query: 2007 VPGVDFIDVFSPVENHSLIRALLGIVAMHNFELQQLDVKTSFLHGEYEEEIYMH*PEGFI 2186
+PG+DF DVFSPV HS IR LLGIVAMH++EL+Q++VKT+FLHGE EE+IYM PEGF+
Sbjct: 864 IPGIDFNDVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELEEDIYMEQPEGFV 923
Query: 2187 VSEKENYVCLLKKSLYGLKQSHRQYYKRFDSVMITHDFRRNSYDSCVYFQMSAVGSFXXX 2366
V KEN VC LKKSLYGLKQS RQ+YKRFDS M++ FR ++YDSCVY ++ GS
Sbjct: 924 VPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRISNYDSCVYLKV-VDGSVIYL 982
Query: 2367 XXXXXXXXIAAKHKEEIKKVKVQFSKEFEIKRLRSCKE 2480
IAAK K EI+K+K Q S EFE+K L + K+
Sbjct: 983 LLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKK 1020
Score = 168 bits (426), Expect(6) = e-176
Identities = 84/126 (66%), Positives = 99/126 (78%)
Frame = +1
Query: 2461 DLEVVKKILGMEIQIDRITGKLYLSRKGYI*KVICRFNMQNAKSVSTPLAAHFRLSSTLS 2640
DL KKILGMEI +R +GKLYLS+KGYI KV+ RFNM +AK VSTPLAAHFRLSS L
Sbjct: 1014 DLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLC 1073
Query: 2641 PQSTDEIDYMSRVPYSSALE*FMYAMVCSHQDLSYDVGAISTYIINPSKEHWKAVQWIFR 2820
P S +I+YMSRVPYSSA+ MYAMVC DLS+ + ++ Y+ NP KEHWKAVQWIFR
Sbjct: 1074 PLSDYDIEYMSRVPYSSAVGSLMYAMVCCRPDLSHALSVVNRYMANPGKEHWKAVQWIFR 1133
Query: 2821 YLRGST 2838
YLRG++
Sbjct: 1134 YLRGTS 1139
Score = 143 bits (360), Expect(6) = e-176
Identities = 65/109 (59%), Positives = 83/109 (76%)
Frame = +3
Query: 1239 LINHYPSSVVDKKTP*EVWSGIHANYSNLKIFGCSAYAHVDNGKLETRYIKCVFLDYKIN 1418
LIN P +DKKTP EVWSG NYS+L++FGC+AYAHVDNGKLE R IKC+FL Y
Sbjct: 603 LINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYASG 662
Query: 1419 VKGYKLWCPET*KVIISRDVIFDENAMIHHLPSRDYSDKIQQKSNTQME 1565
VKGYKLWCPET KV+ISR+V+F E+ ++H PS + + Q+K++ Q+E
Sbjct: 663 VKGYKLWCPETKKVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVE 711
Score = 133 bits (334), Expect(6) = e-176
Identities = 65/97 (67%), Positives = 77/97 (79%)
Frame = +3
Query: 2868 KTRDGVIGYVDSDFTGDLEKIRSITGYVFTIGGCAISWKVTLQTIVALSTTEAEYMAITE 3047
++RDG++GYVDSDF GDL++ RSITGYVFTIGGCA+SWK +LQ VALSTTEAEYMAI E
Sbjct: 1147 RSRDGLVGYVDSDFAGDLDRRRSITGYVFTIGGCAVSWKASLQATVALSTTEAEYMAIFE 1206
Query: 3048 ACRETILLK*LCEELSKDLQITTVFCDS*SAIFLTKD 3158
AC+E I L+ L EL +FCDS SAI+LTKD
Sbjct: 1207 ACKEAIWLRGLYTELCGVTSCINIFCDSQSAIYLTKD 1243
Score = 71.6 bits (174), Expect(6) = e-176
Identities = 39/88 (44%), Positives = 52/88 (59%)
Frame = +1
Query: 1744 LNVTDDIDSSEEHFTYLVAISCDVLSRWNIAMQEELESLHKNGT*DLLRLSKDKKVVRYK 1923
L+V + I+ + E TY AI D +RW AM +E+ESL KN T +L++L K+KK +R K
Sbjct: 776 LSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCK 835
Query: 1924 WXXXXXXXXXXXXXARYKVRLVAKGNSK 2007
W ARYK RLVAKG S+
Sbjct: 836 WIFKRKEGMSPSDEARYKARLVAKGYSQ 863
Score = 32.3 bits (72), Expect(6) = e-176
Identities = 15/26 (57%), Positives = 22/26 (84%), Gaps = 1/26 (3%)
Frame = +2
Query: 1670 IAKNKPRRDIIPPKRY-AKADLVSYA 1744
IAK+KP+R+I PP+RY +A +V+YA
Sbjct: 750 IAKDKPKRNIKPPRRYIEEAKIVAYA 775
Score = 64.7 bits (156), Expect = 6e-07
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = -1
Query: 586 VRITTTMKGCDAISIRTCQELEGPMCDYLSSQY-EKHGVAE*MNRTLMEKVCCMLSNSGL 410
+R M+ C I C+ EG +C Y + +++ VAE MNRT++ K CMLSN+GL
Sbjct: 530 LRTDNGMEFCSKIFKSYCKS-EGIVCHYTAPHTPQQNDVAERMNRTIISKARCMLSNAGL 588
Query: 409 PKTFWAETISTTCFI 365
PK FWAE +ST C++
Sbjct: 589 PKQFWAEAVSTACYL 603
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 208 bits (530), Expect(6) = e-167
Identities = 99/156 (63%), Positives = 120/156 (76%)
Frame = +3
Query: 2868 KTRDGVIGYVDSDFTGDLEKIRSITGYVFTIGGCAISWKVTLQTIVALSTTEAEYMAITE 3047
++RDG++GYVDSDF GDL++ RS+ GYVFTIGGCA+SWK LQ VALSTTEAEYMAI+E
Sbjct: 981 RSRDGLVGYVDSDFAGDLDRRRSLAGYVFTIGGCAVSWKANLQATVALSTTEAEYMAISE 1040
Query: 3048 ACRETILLK*LCEELSKDLQITTVFCDS*SAIFLTKDRMFHERKKHIDVRYHFCHDIISC 3227
AC+ETI L+ L EL +FCDS SAI LTKD+MFHER KHIDVRYHF +I+
Sbjct: 1041 ACKETIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHFIRSVITE 1100
Query: 3228 GNIVVCKISTHDNPVNLMIKTRPIAKFEHCLDLIGI 3335
G++ VCKISTHDNP ++M K P KFE C L+G+
Sbjct: 1101 GDVKVCKISTHDNPADMMTKPVPATKFELCSSLVGV 1136
Score = 168 bits (425), Expect(6) = e-167
Identities = 84/126 (66%), Positives = 99/126 (78%)
Frame = +1
Query: 2461 DLEVVKKILGMEIQIDRITGKLYLSRKGYI*KVICRFNMQNAKSVSTPLAAHFRLSSTLS 2640
DL KKILG+EI +R +GKLYLS+KGYI KV+ RFNM +AK VSTPLAAHFRLSS L
Sbjct: 848 DLGAAKKILGIEITKERHSGKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLC 907
Query: 2641 PQSTDEIDYMSRVPYSSALE*FMYAMVCSHQDLSYDVGAISTYIINPSKEHWKAVQWIFR 2820
PQS +I+YMSRVPYSS + MYAMVCS DLS+ + +S Y+ NP KEHWKAVQWIFR
Sbjct: 908 PQSDYDIEYMSRVPYSSVVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFR 967
Query: 2821 YLRGST 2838
YL G++
Sbjct: 968 YLCGTS 973
Score = 126 bits (316), Expect(6) = e-167
Identities = 73/158 (46%), Positives = 90/158 (56%)
Frame = +3
Query: 2007 VPGVDFIDVFSPVENHSLIRALLGIVAMHNFELQQLDVKTSFLHGEYEEEIYMH*PEGFI 2186
+PG+DF DVFSPV HS IR LL IVAMH++EL Q+DVKT+FLHGE EE+IYM PEGF+
Sbjct: 727 IPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELDQMDVKTAFLHGELEEDIYMEQPEGFV 786
Query: 2187 VSEKENYVCLLKKSLYGLKQSHRQYYKRFDSVMITHDFRRNSYDSCVYFQMSAVGSFXXX 2366
+ KEN FRR++YDSCVY ++ GS
Sbjct: 787 IPGKENL-----------------------------KFRRSNYDSCVYPKV-VDGSAIYL 816
Query: 2367 XXXXXXXXIAAKHKEEIKKVKVQFSKEFEIKRLRSCKE 2480
IAAK K EI K+K Q S EFE+K L + K+
Sbjct: 817 LLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKK 854
Score = 105 bits (263), Expect(6) = e-167
Identities = 48/83 (57%), Positives = 62/83 (74%)
Frame = +3
Query: 1323 LKIFGCSAYAHVDNGKLETRYIKCVFLDYKINVKGYKLWCPET*KVIISRDVIFDENAMI 1502
L++FGC+AYAHVDNGKLE R IKC+FL Y VKGYKLWC ET KV+ISR+V+F E+ M+
Sbjct: 528 LRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCSETKKVVISRNVVFHESVML 587
Query: 1503 HHLPSRDYSDKIQQKSNTQMEFK 1571
H PS + + Q+K++ Q K
Sbjct: 588 HDKPSTNVPIESQEKASVQQSPK 610
Score = 67.4 bits (163), Expect(6) = e-167
Identities = 36/88 (40%), Positives = 51/88 (57%)
Frame = +1
Query: 1744 LNVTDDIDSSEEHFTYLVAISCDVLSRWNIAMQEELESLHKNGT*DLLRLSKDKKVVRYK 1923
L+V ++I+ + E TY AI D +RW AM +E++SL KN T L++L K+KK++ K
Sbjct: 639 LSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMDSLEKNHTWKLVKLPKEKKLIHCK 698
Query: 1924 WXXXXXXXXXXXXXARYKVRLVAKGNSK 2007
W ARYK LVAKG S+
Sbjct: 699 WIFKRKEGMSPTDEARYKAMLVAKGYSQ 726
Score = 31.2 bits (69), Expect(6) = e-167
Identities = 14/29 (48%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
Frame = +2
Query: 1661 QYYIAKNKPRRDIIPPKRY-AKADLVSYA 1744
++ IAK+KP+R+ PP+RY +A++V+YA
Sbjct: 610 KHSIAKDKPKRNTRPPQRYIEEANIVAYA 638
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 204 bits (519), Expect(4) = e-147
Identities = 97/156 (62%), Positives = 121/156 (77%)
Frame = +3
Query: 2868 KTRDGVIGYVDSDFTGDLEKIRSITGYVFTIGGCAISWKVTLQTIVALSTTEAEYMAITE 3047
+T G+IGYVDSD+ DL++ RS+TGYVFTIG CA+SW+ TLQ++VALSTTEAEYMAI E
Sbjct: 1176 RTDKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICE 1235
Query: 3048 ACRETILLK*LCEELSKDLQITTVFCDS*SAIFLTKDRMFHERKKHIDVRYHFCHDIISC 3227
AC+E I LK L ELS ++ CDS SAI+LTKD+MFHER KHID++YHF D+I
Sbjct: 1236 ACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEE 1295
Query: 3228 GNIVVCKISTHDNPVNLMIKTRPIAKFEHCLDLIGI 3335
G + VCKISTHDNP ++M K P+AKFE C L+G+
Sbjct: 1296 GKLKVCKISTHDNPADMMTKPIPVAKFELCSSLVGL 1331
Score = 175 bits (443), Expect(4) = e-147
Identities = 93/158 (58%), Positives = 110/158 (69%)
Frame = +3
Query: 2007 VPGVDFIDVFSPVENHSLIRALLGIVAMHNFELQQLDVKTSFLHGEYEEEIYMH*PEGFI 2186
+PGVD+ DVFSPV HS IR L IVA H+ EL+QLDVKT+FLHGE EE+IYM PEGFI
Sbjct: 893 IPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFI 952
Query: 2187 VSEKENYVCLLKKSLYGLKQSHRQYYKRFDSVMITHDFRRNSYDSCVYFQMSAVGSFXXX 2366
V KE YVC LK+SLYGLKQS RQ+ KRFDS M++H F+R+ YDSCVY + GS
Sbjct: 953 VPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIK-HVNGSPIYL 1011
Query: 2367 XXXXXXXXIAAKHKEEIKKVKVQFSKEFEIKRLRSCKE 2480
IAAK K EI K+K S EF++K L S K+
Sbjct: 1012 LLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKK 1049
Score = 159 bits (402), Expect(4) = e-147
Identities = 79/126 (62%), Positives = 95/126 (75%)
Frame = +1
Query: 2461 DLEVVKKILGMEIQIDRITGKLYLSRKGYI*KVICRFNMQNAKSVSTPLAAHFRLSSTLS 2640
DL KKIL MEI DR +G L+LS+ YI KV+ RFNMQNAK+VSTP+A HF+LS+
Sbjct: 1043 DLGSAKKILVMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQC 1102
Query: 2641 PQSTDEIDYMSRVPYSSALE*FMYAMVCSHQDLSYDVGAISTYIINPSKEHWKAVQWIFR 2820
P + EI+YMSRVPYSSA+ MYAMVCS DLSY + +S Y+ NP KEHW+ VQWIFR
Sbjct: 1103 PSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRVVQWIFR 1162
Query: 2821 YLRGST 2838
YLRG+T
Sbjct: 1163 YLRGTT 1168
Score = 58.5 bits (140), Expect(4) = e-147
Identities = 30/88 (34%), Positives = 45/88 (51%)
Frame = +1
Query: 1744 LNVTDDIDSSEEHFTYLVAISCDVLSRWNIAMQEELESLHKNGT*DLLRLSKDKKVVRYK 1923
L+ + +++ E TY A+ C W AM EE++SL KN T +++ L K KK + K
Sbjct: 805 LSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCK 864
Query: 1924 WXXXXXXXXXXXXXARYKVRLVAKGNSK 2007
W +YK RLVA+G S+
Sbjct: 865 WIFKRKEGLSSSEPPKYKARLVARGYSQ 892
Score = 127 bits (318), Expect = 9e-26
Identities = 63/110 (57%), Positives = 79/110 (71%), Gaps = 1/110 (0%)
Frame = +3
Query: 1239 LINHYPSSVVDKKTP*EVWSGIHANYSNLKIFGCSAYAHVDNGKLETRYIKCVFLDYKIN 1418
LIN PS ++KKTP EVWSG A+YS LK+FGC+AYAHVDNGKLE R +KC+FL Y
Sbjct: 623 LINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSG 682
Query: 1419 VKGYKLWCPET*KVIISRDVIFDENAMI-HHLPSRDYSDKIQQKSNTQME 1565
VKGYKLW PET K +SR V+F+E+ M + LPS +K Q+ + Q+E
Sbjct: 683 VKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVE 732
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 172 bits (437), Expect(6) = e-143
Identities = 87/150 (58%), Positives = 106/150 (70%)
Frame = +3
Query: 2031 VFSPVENHSLIRALLGIVAMHNFELQQLDVKTSFLHGEYEEEIYMH*PEGFIVSEKENYV 2210
VFSPV H IR LL +V++ N EL QLDVKT+FLHG EEEIYM PEGF+ SEK ++V
Sbjct: 1199 VFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDHV 1258
Query: 2211 CLLKKSLYGLKQSHRQYYKRFDSVMITHDFRRNSYDSCVYFQMSAVGSFXXXXXXXXXXX 2390
C LKKSLYGLKQS RQ+YKRFD+ M++H+F RN YDSCVYF+ GSF
Sbjct: 1259 CFLKKSLYGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKTLPDGSFIYLLLYVDDML 1318
Query: 2391 IAAKHKEEIKKVKVQFSKEFEIKRLRSCKE 2480
IAAK++ EI K+K S EFE+K L + K+
Sbjct: 1319 IAAKNRAEINKLKQLLSSEFEMKDLGAAKK 1348
Score = 137 bits (345), Expect(6) = e-143
Identities = 69/149 (46%), Positives = 97/149 (65%)
Frame = +3
Query: 2880 GVIGYVDSDFTGDLEKIRSITGYVFTIGGCAISWKVTLQTIVALSTTEAEYMAITEACRE 3059
G++G+ DSD GDL K RS+T Y+FT+ GCAISW+ +LQ VALSTTEAEYM++TE +E
Sbjct: 1481 GLVGFTDSDHGGDLMKRRSLTCYIFTLFGCAISWRASLQPTVALSTTEAEYMSLTEGVKE 1540
Query: 3060 TILLK*LCEELSKDLQITTVFCDS*SAIFLTKDRMFHERKKHIDVRYHFCHDIISCGNIV 3239
+ L L +L ++CDS SA+ L K+ ++HER KHIDVR +F D+I
Sbjct: 1541 GMWLNGFLGSLGLNLSKPVIYCDSQSALCLAKNPVYHERTKHIDVRLNFIRDVIEEKLFS 1600
Query: 3240 VCKISTHDNPVNLMIKTRPIAKFEHCLDL 3326
+ K++T NP +++ K KF+H L L
Sbjct: 1601 IEKVATEVNPADMLTKPITTEKFKHSLGL 1629
Score = 134 bits (336), Expect(6) = e-143
Identities = 63/126 (50%), Positives = 88/126 (69%)
Frame = +1
Query: 2461 DLEVVKKILGMEIQIDRITGKLYLSRKGYI*KVICRFNMQNAKSVSTPLAAHFRLSSTLS 2640
DL KKILGMEI DR G LY+S++ YI K++ F+M ++K VSTPLA HF+ +
Sbjct: 1342 DLGAAKKILGMEIWRDRDAGLLYVSQQKYIEKLMQAFHMDHSKPVSTPLAQHFKFDHSTL 1401
Query: 2641 PQSTDEIDYMSRVPYSSALE*FMYAMVCSHQDLSYDVGAISTYIINPSKEHWKAVQWIFR 2820
P + +E++YM VPYSS + MYAMVC+ DL++ V +S ++ NP K HW+AV+WI R
Sbjct: 1402 PSTDEEVEYMKSVPYSSVVGSLMYAMVCTRPDLAFAVSVVSRFMSNPGKAHWEAVKWIMR 1461
Query: 2821 YLRGST 2838
YL+GS+
Sbjct: 1462 YLKGSS 1467
Score = 119 bits (298), Expect(6) = e-143
Identities = 63/118 (53%), Positives = 79/118 (66%), Gaps = 7/118 (5%)
Frame = +3
Query: 1239 LINHYPSSVVDKKTP*EVWSGIHANYSNLKIFGCSAYAHVDNGKLETRYIKCVFLDYKIN 1418
L+N PS+ +D KTP EVWSG +NYS LKIFGC AYAHV +GKLE R +KC+FL Y
Sbjct: 943 LVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATG 1002
Query: 1419 VKGYKLWCPE--T*KVIISRDVIFDENAMIHHLPSRDYSD-----KIQQKSNTQMEFK 1571
VKGY+LWC E T K IISRDV FDE+AM +++ D K +N ++EF+
Sbjct: 1003 VKGYRLWCTEDRTPKFIISRDVTFDESAMFGQ--RKEFGDLAGTSKTDLGANQKVEFE 1058
Score = 40.4 bits (93), Expect(6) = e-143
Identities = 28/84 (33%), Positives = 40/84 (47%)
Frame = +1
Query: 1744 LNVTDDIDSSEEHFTYLVAISCDVLSRWNIAMQEELESLHKNGT*DLLRLSKDKKVVRYK 1923
L V ++I EE +Y A+ +W +M +E+ SL KN T +L+ L + K V K
Sbjct: 1116 LAVAEEI-GREEPRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCK 1174
Query: 1924 WXXXXXXXXXXXXXARYKVRLVAK 1995
W +YK RLVAK
Sbjct: 1175 WLFKIKDGISEDEPPKYKSRLVAK 1198
Score = 21.6 bits (44), Expect(6) = e-143
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 1670 IAKNKPRRDIIPPKRY 1717
IA +PRR+I P RY
Sbjct: 1085 IAAXRPRREIRRPMRY 1100
>ref|XP_010676254.1| PREDICTED: uncharacterized protein LOC104892119 [Beta vulgaris subsp.
vulgaris]
Length = 1947
Score = 161 bits (408), Expect(4) = e-128
Identities = 82/156 (52%), Positives = 104/156 (66%)
Frame = +3
Query: 2013 GVDFIDVFSPVENHSLIRALLGIVAMHNFELQQLDVKTSFLHGEYEEEIYMH*PEGFIVS 2192
GVD+ ++FSPV H+ IR LL +VA + EL+QLDVKT+FLHGE EE+I M PEGF+V
Sbjct: 982 GVDYNEIFSPVVRHTSIRVLLAMVAHFDLELEQLDVKTAFLHGELEEDILMSQPEGFVVP 1041
Query: 2193 EKENYVCLLKKSLYGLKQSHRQYYKRFDSVMITHDFRRNSYDSCVYFQMSAVGSFXXXXX 2372
KE + C LKKSLYGLKQS RQ+YKRFDS M+ H F R+ YD CVY GS+
Sbjct: 1042 GKEKFACSLKKSLYGLKQSPRQWYKRFDSFMVEHGFDRSPYDCCVYHSKVEDGSYIYLLL 1101
Query: 2373 XXXXXXIAAKHKEEIKKVKVQFSKEFEIKRLRSCKE 2480
IAAK K ++ K+K S EF++K L + K+
Sbjct: 1102 YVDDMLIAAKKKSDVLKLKKLLSSEFDMKDLGAAKK 1137
Score = 159 bits (401), Expect(4) = e-128
Identities = 80/151 (52%), Positives = 104/151 (68%)
Frame = +3
Query: 2883 VIGYVDSDFTGDLEKIRSITGYVFTIGGCAISWKVTLQTIVALSTTEAEYMAITEACRET 3062
V GY DSD+ GD++ RS+TGYV+T+GG +SWK TLQ+ V LSTTEAEYMA+T A +E
Sbjct: 1270 VTGYSDSDYAGDIDTRRSMTGYVYTLGGSVVSWKATLQSSVTLSTTEAEYMALTAAAKEG 1329
Query: 3063 ILLK*LCEELSKDLQITTVFCDS*SAIFLTKDRMFHERKKHIDVRYHFCHDIISCGNIVV 3242
I L+ L +L V+CDS SAI L KD++ H+R KHIDVRYHF + S IVV
Sbjct: 1330 IWLRGLVSDLGLHHDRAIVYCDSLSAICLAKDQVHHDRTKHIDVRYHF---LRSEKRIVV 1386
Query: 3243 CKISTHDNPVNLMIKTRPIAKFEHCLDLIGI 3335
K+ T DNP ++ K P+ KF+HCLDL+ +
Sbjct: 1387 KKVGTADNPADMFTKPVPVRKFKHCLDLLNV 1417
Score = 142 bits (357), Expect(4) = e-128
Identities = 72/127 (56%), Positives = 91/127 (71%)
Frame = +1
Query: 2461 DLEVVKKILGMEIQIDRITGKLYLSRKGYI*KVICRFNMQNAKSVSTPLAAHFRLSSTLS 2640
DL KKILGMEI D KL+LS+K YI KV+ RF M AKS+ TP AA+ RLS LS
Sbjct: 1131 DLGAAKKILGMEIYRDHGRKKLFLSQKSYILKVLDRFGMSTAKSIDTPAAANARLSVVLS 1190
Query: 2641 PQSTDEIDYMSRVPYSSALE*FMYAMVCSHQDLSYDVGAISTYIINPSKEHWKAVQWIFR 2820
PQS +E +YMS+VPY+SA+ MYAMVC+ DL++ V +S ++ P KEHW+AV+ IFR
Sbjct: 1191 PQSDEEKEYMSKVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMTQPGKEHWQAVKRIFR 1250
Query: 2821 YLRGSTD 2841
YLRG+ D
Sbjct: 1251 YLRGTAD 1257
Score = 69.7 bits (169), Expect(4) = e-128
Identities = 38/88 (43%), Positives = 54/88 (61%)
Frame = +1
Query: 1744 LNVTDDIDSSEEHFTYLVAISCDVLSRWNIAMQEELESLHKNGT*DLLRLSKDKKVVRYK 1923
L+V +DI+S E +Y A+S + ++W +AM EE+ESLHKN T +L+R+ + +KVV K
Sbjct: 893 LHVAEDIESPEP-MSYKEAVSSNESAKWLVAMSEEMESLHKNQTWELVRIPQGRKVVGCK 951
Query: 1924 WXXXXXXXXXXXXXARYKVRLVAKGNSK 2007
W RYK RLVAKG S+
Sbjct: 952 WVFKRKEGTSEGESVRYKARLVAKGFSQ 979
Score = 98.6 bits (244), Expect = 4e-17
Identities = 48/87 (55%), Positives = 57/87 (65%)
Frame = +3
Query: 1239 LINHYPSSVVDKKTP*EVWSGIHANYSNLKIFGCSAYAHVDNGKLETRYIKCVFLDYKIN 1418
LIN P + +D K P EVWSG A YS L++FGC Y HV+ GKLE R K FL Y
Sbjct: 698 LINRGPHTGIDCKVPYEVWSGRSAEYSGLRVFGCMVYYHVNEGKLEPRAKKGCFLGYGDG 757
Query: 1419 VKGYKLWCPET*KVIISRDVIFDENAM 1499
VKGY++W P +VI+SRDV FDEN M
Sbjct: 758 VKGYRIWSPSEGRVILSRDVTFDENTM 784
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 165 bits (418), Expect(5) = e-126
Identities = 87/156 (55%), Positives = 107/156 (68%)
Frame = +3
Query: 2013 GVDFIDVFSPVENHSLIRALLGIVAMHNFELQQLDVKTSFLHGEYEEEIYMH*PEGFIVS 2192
GVD+ ++FSPV H+ IR LL IVA N EL+QLDVKT+FLHGE EEEIYM P+GF V
Sbjct: 869 GVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVP 928
Query: 2193 EKENYVCLLKKSLYGLKQSHRQYYKRFDSVMITHDFRRNSYDSCVYFQMSAVGSFXXXXX 2372
KEN+VC LKKSLYGLKQS RQ+YKRFDS M+ + R+SYD CVY+ SF
Sbjct: 929 GKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVL 988
Query: 2373 XXXXXXIAAKHKEEIKKVKVQFSKEFEIKRLRSCKE 2480
IAAK K +I+K+K S EFE+K L + ++
Sbjct: 989 YVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARK 1024
Score = 163 bits (412), Expect(5) = e-126
Identities = 85/151 (56%), Positives = 104/151 (68%)
Frame = +3
Query: 2883 VIGYVDSDFTGDLEKIRSITGYVFTIGGCAISWKVTLQTIVALSTTEAEYMAITEACRET 3062
V GY DSD+ GD++ RS+TGYVFT+GG +SWK TLQ V LSTTEAEYMA+TEA +E
Sbjct: 1157 VTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMALTEAAKEG 1216
Query: 3063 ILLK*LCEELSKDLQITTVFCDS*SAIFLTKDRMFHERKKHIDVRYHFCHDIISCGNIVV 3242
I LK L +L TV+CDS SAI L KD++ HER KHIDVRYHF + S I V
Sbjct: 1217 IWLKGLVSDLGLHHDQATVYCDSLSAICLAKDQVHHERTKHIDVRYHF---LRSEKRIKV 1273
Query: 3243 CKISTHDNPVNLMIKTRPIAKFEHCLDLIGI 3335
K+ T DNP ++ K P +KF+HCLDL+ I
Sbjct: 1274 KKVGTADNPADMFTKPVPQSKFQHCLDLLNI 1304
Score = 134 bits (337), Expect(5) = e-126
Identities = 65/127 (51%), Positives = 92/127 (72%)
Frame = +1
Query: 2461 DLEVVKKILGMEIQIDRITGKLYLSRKGYI*KVICRFNMQNAKSVSTPLAAHFRLSSTLS 2640
DL +KILGMEI DR KL+LS++ YI KV+ RF M ++K + TP AA+ L++ +
Sbjct: 1018 DLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFA 1077
Query: 2641 PQSTDEIDYMSRVPYSSALE*FMYAMVCSHQDLSYDVGAISTYIINPSKEHWKAVQWIFR 2820
PQS +E +YMSRVPY+SA+ MYAMVC+ DL++ V +S ++ P +EHW+AV+ IFR
Sbjct: 1078 PQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFR 1137
Query: 2821 YLRGSTD 2841
YLRG++D
Sbjct: 1138 YLRGTSD 1144
Score = 56.2 bits (134), Expect(5) = e-126
Identities = 31/85 (36%), Positives = 45/85 (52%)
Frame = +1
Query: 1744 LNVTDDIDSSEEHFTYLVAISCDVLSRWNIAMQEELESLHKNGT*DLLRLSKDKKVVRYK 1923
L V +++D+SE TY AI +W AM +E+ESLHKN T DL+ +K++ K
Sbjct: 780 LQVAEEVDTSEPS-TYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCK 838
Query: 1924 WXXXXXXXXXXXXXARYKVRLVAKG 1998
W +YK R+VA+G
Sbjct: 839 WVFKKKEGISPAEGVKYKARVVARG 863
Score = 28.5 bits (62), Expect(5) = e-126
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 1655 DAQYYIAKNKPRR-DIIPPKRYAKADLVSYA 1744
D IA+++PRR + PP RY D+V YA
Sbjct: 749 DIHQSIAQDRPRRVGVRPPTRYGFEDMVGYA 779
Score = 96.3 bits (238), Expect = 2e-16
Identities = 46/88 (52%), Positives = 62/88 (70%)
Frame = +3
Query: 1239 LINHYPSSVVDKKTP*EVWSGIHANYSNLKIFGCSAYAHVDNGKLETRYIKCVFLDYKIN 1418
LIN P + + KTP E+WSG A+YSNLK FGC+AY HV GKLE R K VF+ Y
Sbjct: 609 LINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDG 668
Query: 1419 VKGYKLWCPET*KVIISRDVIFDENAMI 1502
VKG+++W P +VI+SR+V+FDE+ ++
Sbjct: 669 VKGFRIWSPAEKRVIMSRNVVFDESPLL 696
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 187 bits (476), Expect(4) = e-123
Identities = 95/158 (60%), Positives = 116/158 (73%)
Frame = +3
Query: 2007 VPGVDFIDVFSPVENHSLIRALLGIVAMHNFELQQLDVKTSFLHGEYEEEIYMH*PEGFI 2186
+PG+DF D+FSPV HS IR LL IVAMH++EL+Q+DVKT+FLHGE EE+IYM PEGF+
Sbjct: 818 IPGIDFNDIFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFV 877
Query: 2187 VSEKENYVCLLKKSLYGLKQSHRQYYKRFDSVMITHDFRRNSYDSCVYFQMSAVGSFXXX 2366
V KEN VC LKKSLYGLKQS RQ+YKRFDS M++ FRR++YDSCVY ++ GS
Sbjct: 878 VPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKV-VDGSAIYL 936
Query: 2367 XXXXXXXXIAAKHKEEIKKVKVQFSKEFEIKRLRSCKE 2480
IAAK K EI K+K Q S EFE+K L + K+
Sbjct: 937 LLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKK 974
Score = 164 bits (415), Expect(4) = e-123
Identities = 79/125 (63%), Positives = 98/125 (78%)
Frame = +3
Query: 2868 KTRDGVIGYVDSDFTGDLEKIRSITGYVFTIGGCAISWKVTLQTIVALSTTEAEYMAITE 3047
++RDG++GYVDSDF GDL++ RS+TGYVFTIGGCA+SWK +LQ VALSTTEAEY+AI+E
Sbjct: 1081 RSRDGLVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEYIAISE 1140
Query: 3048 ACRETILLK*LCEELSKDLQITTVFCDS*SAIFLTKDRMFHERKKHIDVRYHFCHDIISC 3227
AC+E I L+ L EL + CDS SAI LTKD+MFHER KHIDVRYHF +I+
Sbjct: 1141 ACKEAIWLRDLYTELCGVTSCINIVCDSQSAICLTKDQMFHERTKHIDVRYHFIRGVIAE 1200
Query: 3228 GNIVV 3242
G++ V
Sbjct: 1201 GDVKV 1205
Score = 119 bits (299), Expect(4) = e-123
Identities = 64/126 (50%), Positives = 81/126 (64%)
Frame = +1
Query: 2461 DLEVVKKILGMEIQIDRITGKLYLSRKGYI*KVICRFNMQNAKSVSTPLAAHFRLSSTLS 2640
DL KKILGMEI +R + KLYLS+KGYI KV+ RFNM +AK P+ H ++
Sbjct: 968 DLGAAKKILGMEITRERHSDKLYLSQKGYIEKVLRRFNMHDAK----PIYVHSQIY---- 1019
Query: 2641 PQSTDEIDYMSRVPYSSALE*FMYAMVCSHQDLSYDVGAISTYIINPSKEHWKAVQWIFR 2820
VPYSSA+ MYAM+CS DLS+ + +S Y++NP KEHWKAVQWIFR
Sbjct: 1020 ------------VPYSSAVGSLMYAMICSRPDLSHALSVVSRYMVNPGKEHWKAVQWIFR 1067
Query: 2821 YLRGST 2838
YL G++
Sbjct: 1068 YLHGTS 1073
Score = 43.9 bits (102), Expect(4) = e-123
Identities = 23/52 (44%), Positives = 29/52 (55%)
Frame = +1
Query: 1852 ESLHKNGT*DLLRLSKDKKVVRYKWXXXXXXXXXXXXXARYKVRLVAKGNSK 2007
E L KN T +L++L K+ K +R KW ARYK RLVAKG S+
Sbjct: 766 EELEKNHTWELVKLPKENKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQ 817
Score = 143 bits (360), Expect = 1e-30
Identities = 66/109 (60%), Positives = 83/109 (76%)
Frame = +3
Query: 1239 LINHYPSSVVDKKTP*EVWSGIHANYSNLKIFGCSAYAHVDNGKLETRYIKCVFLDYKIN 1418
LIN P +DKKTP +VWSG ANYS+LK+FGC+AYAHVDNGKLE R IKC+FL Y
Sbjct: 616 LINRSPGYAIDKKTPIKVWSGSPANYSDLKVFGCTAYAHVDNGKLEPRTIKCIFLGYPSG 675
Query: 1419 VKGYKLWCPET*KVIISRDVIFDENAMIHHLPSRDYSDKIQQKSNTQME 1565
VKGYKLWCPET KV+ISR V+F E+ M+H PS + + Q+K++ Q++
Sbjct: 676 VKGYKLWCPETKKVVISRYVVFHESVMLHDKPSTNIPVESQEKASVQIQ 724
Score = 63.5 bits (153), Expect = 1e-06
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = -1
Query: 586 VRITTTMKGCDAISIRTCQELEGPMCDY-LSSQYEKHGVAE*MNRTLMEKVCCMLSNSGL 410
+R M+ C I C+ EG M Y + +++GVAE MNRT++ K CMLSN+GL
Sbjct: 543 LRTDNGMEFCSKIFKSYCKS-EGIMRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGL 601
Query: 409 PKTFWAETISTTCFI 365
PK FWAE +ST C++
Sbjct: 602 PKQFWAEAVSTACYL 616
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 187 bits (476), Expect(4) = e-123
Identities = 95/158 (60%), Positives = 116/158 (73%)
Frame = +3
Query: 2007 VPGVDFIDVFSPVENHSLIRALLGIVAMHNFELQQLDVKTSFLHGEYEEEIYMH*PEGFI 2186
+PG+DF D+FSPV HS IR LL IVAMH++EL+Q+DVKT+FLHGE EE+IYM PEGF+
Sbjct: 650 IPGIDFNDIFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFV 709
Query: 2187 VSEKENYVCLLKKSLYGLKQSHRQYYKRFDSVMITHDFRRNSYDSCVYFQMSAVGSFXXX 2366
V KEN VC LKKSLYGLKQS RQ+YKRFDS M++ FRR++YDSCVY ++ GS
Sbjct: 710 VPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKV-VDGSAIYL 768
Query: 2367 XXXXXXXXIAAKHKEEIKKVKVQFSKEFEIKRLRSCKE 2480
IAAK K EI K+K Q S EFE+K L + K+
Sbjct: 769 LLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKK 806
Score = 164 bits (415), Expect(4) = e-123
Identities = 79/125 (63%), Positives = 98/125 (78%)
Frame = +3
Query: 2868 KTRDGVIGYVDSDFTGDLEKIRSITGYVFTIGGCAISWKVTLQTIVALSTTEAEYMAITE 3047
++RDG++GYVDSDF GDL++ RS+TGYVFTIGGCA+SWK +LQ VALSTTEAEY+AI+E
Sbjct: 913 RSRDGLVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEYIAISE 972
Query: 3048 ACRETILLK*LCEELSKDLQITTVFCDS*SAIFLTKDRMFHERKKHIDVRYHFCHDIISC 3227
AC+E I L+ L EL + CDS SAI LTKD+MFHER KHIDVRYHF +I+
Sbjct: 973 ACKEAIWLRDLYTELCGVTSCINIVCDSQSAICLTKDQMFHERTKHIDVRYHFIRGVIAE 1032
Query: 3228 GNIVV 3242
G++ V
Sbjct: 1033 GDVKV 1037
Score = 119 bits (299), Expect(4) = e-123
Identities = 64/126 (50%), Positives = 81/126 (64%)
Frame = +1
Query: 2461 DLEVVKKILGMEIQIDRITGKLYLSRKGYI*KVICRFNMQNAKSVSTPLAAHFRLSSTLS 2640
DL KKILGMEI +R + KLYLS+KGYI KV+ RFNM +AK P+ H ++
Sbjct: 800 DLGAAKKILGMEITRERHSDKLYLSQKGYIEKVLRRFNMHDAK----PIYVHSQIY---- 851
Query: 2641 PQSTDEIDYMSRVPYSSALE*FMYAMVCSHQDLSYDVGAISTYIINPSKEHWKAVQWIFR 2820
VPYSSA+ MYAM+CS DLS+ + +S Y++NP KEHWKAVQWIFR
Sbjct: 852 ------------VPYSSAVGSLMYAMICSRPDLSHALSVVSRYMVNPGKEHWKAVQWIFR 899
Query: 2821 YLRGST 2838
YL G++
Sbjct: 900 YLHGTS 905
Score = 43.9 bits (102), Expect(4) = e-123
Identities = 23/52 (44%), Positives = 29/52 (55%)
Frame = +1
Query: 1852 ESLHKNGT*DLLRLSKDKKVVRYKWXXXXXXXXXXXXXARYKVRLVAKGNSK 2007
E L KN T +L++L K+ K +R KW ARYK RLVAKG S+
Sbjct: 598 EELEKNHTWELVKLPKENKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQ 649
Score = 143 bits (360), Expect = 1e-30
Identities = 66/109 (60%), Positives = 83/109 (76%)
Frame = +3
Query: 1239 LINHYPSSVVDKKTP*EVWSGIHANYSNLKIFGCSAYAHVDNGKLETRYIKCVFLDYKIN 1418
LIN P +DKKTP +VWSG ANYS+LK+FGC+AYAHVDNGKLE R IKC+FL Y
Sbjct: 448 LINRSPGYAIDKKTPIKVWSGSPANYSDLKVFGCTAYAHVDNGKLEPRTIKCIFLGYPSG 507
Query: 1419 VKGYKLWCPET*KVIISRDVIFDENAMIHHLPSRDYSDKIQQKSNTQME 1565
VKGYKLWCPET KV+ISR V+F E+ M+H PS + + Q+K++ Q++
Sbjct: 508 VKGYKLWCPETKKVVISRYVVFHESVMLHDKPSTNIPVESQEKASVQIQ 556
Score = 63.5 bits (153), Expect = 1e-06
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = -1
Query: 586 VRITTTMKGCDAISIRTCQELEGPMCDY-LSSQYEKHGVAE*MNRTLMEKVCCMLSNSGL 410
+R M+ C I C+ EG M Y + +++GVAE MNRT++ K CMLSN+GL
Sbjct: 375 LRTDNGMEFCSKIFKSYCKS-EGIMRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGL 433
Query: 409 PKTFWAETISTTCFI 365
PK FWAE +ST C++
Sbjct: 434 PKQFWAEAVSTACYL 448
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 187 bits (474), Expect(5) = e-117
Identities = 95/158 (60%), Positives = 116/158 (73%)
Frame = +3
Query: 2007 VPGVDFIDVFSPVENHSLIRALLGIVAMHNFELQQLDVKTSFLHGEYEEEIYMH*PEGFI 2186
+PG+DF DVFSP+ HS IR LLGIVAMH++EL+Q+DVKT+FLHGE EE+IYM PEGF+
Sbjct: 927 IPGIDFNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFV 986
Query: 2187 VSEKENYVCLLKKSLYGLKQSHRQYYKRFDSVMITHDFRRNSYDSCVYFQMSAVGSFXXX 2366
V KEN VC LKKSLYGLKQS RQ+YKRFDS M++ FRR++YDSCVY ++ GS
Sbjct: 987 VLGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKV-VDGSAIYL 1045
Query: 2367 XXXXXXXXIAAKHKEEIKKVKVQFSKEFEIKRLRSCKE 2480
IAAK K EI K+K Q S EF +K L + K+
Sbjct: 1046 LLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKK 1083
Score = 145 bits (365), Expect(5) = e-117
Identities = 67/109 (61%), Positives = 84/109 (77%)
Frame = +3
Query: 1239 LINHYPSSVVDKKTP*EVWSGIHANYSNLKIFGCSAYAHVDNGKLETRYIKCVFLDYKIN 1418
LIN PS DKKTP EVWSG ANYS+L++FGC+AYAHVDNGKLE R IKC+FL Y
Sbjct: 666 LINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSG 725
Query: 1419 VKGYKLWCPET*KVIISRDVIFDENAMIHHLPSRDYSDKIQQKSNTQME 1565
VKGYKLWCPET KV+ISR+V+F E+ ++H PS + + Q+K++ Q+E
Sbjct: 726 VKGYKLWCPETKKVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVE 774
Score = 82.4 bits (202), Expect(5) = e-117
Identities = 50/92 (54%), Positives = 60/92 (65%)
Frame = +1
Query: 2461 DLEVVKKILGMEIQIDRITGKLYLSRKGYI*KVICRFNMQNAKSVSTPLAAHFRLSSTLS 2640
DL KKILGMEI +R +GKLYLS+KGYI KV+ RFNM + K + FR L
Sbjct: 1077 DLGAAKKILGMEITRERHSGKLYLSQKGYIKKVLRRFNMHDVKPII------FR----LC 1126
Query: 2641 PQSTDEIDYMSRVPYSSALE*FMYAMVCSHQD 2736
PQS +I+YMSRVPYSSA+ MYAM +D
Sbjct: 1127 PQSDYDIEYMSRVPYSSAVGSLMYAMFGRSRD 1158
Score = 70.9 bits (172), Expect(5) = e-117
Identities = 38/88 (43%), Positives = 52/88 (59%)
Frame = +1
Query: 1744 LNVTDDIDSSEEHFTYLVAISCDVLSRWNIAMQEELESLHKNGT*DLLRLSKDKKVVRYK 1923
L+V ++I+ + E TY AI D +RW AM +E+ESL KN T + ++L K+KK +R K
Sbjct: 839 LSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCK 898
Query: 1924 WXXXXXXXXXXXXXARYKVRLVAKGNSK 2007
W ARYK RLVAKG S+
Sbjct: 899 WIFKRKEGMSPSDEARYKARLVAKGYSQ 926
Score = 33.1 bits (74), Expect(5) = e-117
Identities = 15/26 (57%), Positives = 23/26 (88%), Gaps = 1/26 (3%)
Frame = +2
Query: 1670 IAKNKPRRDIIPPKRY-AKADLVSYA 1744
IAK+KP+R+I PP+RY +A++V+YA
Sbjct: 813 IAKDKPKRNIKPPRRYIEEANIVAYA 838
Score = 199 bits (505), Expect = 2e-47
Identities = 96/156 (61%), Positives = 116/156 (74%)
Frame = +3
Query: 2868 KTRDGVIGYVDSDFTGDLEKIRSITGYVFTIGGCAISWKVTLQTIVALSTTEAEYMAITE 3047
++RDG +GYVDSDF GDL++ RS+TGYVFTIGGC +SWK +LQ VALSTTEAEYMAI+E
Sbjct: 1155 RSRDGFVGYVDSDFAGDLDRRRSLTGYVFTIGGCDVSWKASLQATVALSTTEAEYMAISE 1214
Query: 3048 ACRETILLK*LCEELSKDLQITTVFCDS*SAIFLTKDRMFHERKKHIDVRYHFCHDIISC 3227
AC+E I L+ L EL +FCDS SAI LTKD+MFHER KHIDVRYH +I
Sbjct: 1215 ACKEAIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHIIRGVIVE 1274
Query: 3228 GNIVVCKISTHDNPVNLMIKTRPIAKFEHCLDLIGI 3335
G++ VCKISTHDNP ++M K KFE C L+G+
Sbjct: 1275 GDVKVCKISTHDNPADMMTKPVSATKFELCSSLVGV 1310
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 160 bits (406), Expect(5) = e-112
Identities = 82/155 (52%), Positives = 106/155 (68%)
Frame = +3
Query: 2013 GVDFIDVFSPVENHSLIRALLGIVAMHNFELQQLDVKTSFLHGEYEEEIYMH*PEGFIVS 2192
GVDF ++FSPV HS IR LL +VA+ + EL+Q+DVKT+FLHG EE+I M PEGF
Sbjct: 892 GVDFNEIFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQILMAQPEGFECK 951
Query: 2193 EKENYVCLLKKSLYGLKQSHRQYYKRFDSVMITHDFRRNSYDSCVYFQMSAVGSFXXXXX 2372
+KE+YVCLL KSLYGLKQS RQ+Y+RFD M++ +RR+ YDSCVYF S G
Sbjct: 952 DKEDYVCLLHKSLYGLKQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFGGSDQGGVAYLLL 1011
Query: 2373 XXXXXXIAAKHKEEIKKVKVQFSKEFEIKRLRSCK 2477
IA+K+K EI+++K EFE+K L + K
Sbjct: 1012 YVDDMLIASKYKSEIERLKNLLKAEFEMKDLGNAK 1046
Score = 149 bits (377), Expect(5) = e-112
Identities = 74/151 (49%), Positives = 106/151 (70%)
Frame = +3
Query: 2883 VIGYVDSDFTGDLEKIRSITGYVFTIGGCAISWKVTLQTIVALSTTEAEYMAITEACRET 3062
V+G+VDSDF GDL++ +S + Y+F + C ISWK +LQ+ ALS+TEAE++A TEA +E
Sbjct: 1179 VMGFVDSDFAGDLDRRKSTSRYMFVLNSCLISWKSSLQSGGALSSTEAEFIATTEAVKEA 1238
Query: 3063 ILLK*LCEELSKDLQITTVFCDS*SAIFLTKDRMFHERKKHIDVRYHFCHDIISCGNIVV 3242
+ L+ L EL + +I VFCD+ +AI L K++M+HER KHIDV+ F D + G +VV
Sbjct: 1239 MWLRGLLNELWLNQKIVQVFCDNQNAIHLVKNQMYHERTKHIDVKLQFIRDEVGKGTVVV 1298
Query: 3243 CKISTHDNPVNLMIKTRPIAKFEHCLDLIGI 3335
KI T NP + + K+ P AKFE C++L+GI
Sbjct: 1299 SKIHTSVNPADALTKSLPTAKFEFCVNLMGI 1329
Score = 114 bits (285), Expect(5) = e-112
Identities = 58/126 (46%), Positives = 80/126 (63%)
Frame = +1
Query: 2461 DLEVVKKILGMEIQIDRITGKLYLSRKGYI*KVICRFNMQNAKSVSTPLAAHFRLSSTLS 2640
DL K+ILGM+I DR G L+LS+ YI KV+ RF MQ+ K V TPL F+LS+ +
Sbjct: 1041 DLGNAKRILGMDIIRDRSAGTLFLSQGKYIKKVLERFEMQDCKPVQTPLGPQFKLSAATT 1100
Query: 2641 PQSTDEIDYMSRVPYSSALE*FMYAMVCSHQDLSYDVGAISTYIINPSKEHWKAVQWIFR 2820
+ + M+ PY+ A+ MYAMVC+ D++Y V +S Y+ P K HW AV+WI R
Sbjct: 1101 SEDESQ---MNEFPYAQAVGSLMYAMVCTRSDIAYAVSVVSRYLSCPGKVHWNAVKWIMR 1157
Query: 2821 YLRGST 2838
YL+GS+
Sbjct: 1158 YLKGSS 1163
Score = 43.9 bits (102), Expect(5) = e-112
Identities = 23/67 (34%), Positives = 36/67 (53%)
Frame = +1
Query: 1798 AISCDVLSRWNIAMQEELESLHKNGT*DLLRLSKDKKVVRYKWXXXXXXXXXXXXXARYK 1977
++ CD +W AMQ+E+ESL +N T L+ +K+++ KW +YK
Sbjct: 823 SVHCD---KWLEAMQDEMESLQRNQTWTLIPNPGNKRLINCKWIFKRNEGIPDVEPPKYK 879
Query: 1978 VRLVAKG 1998
RLVA+G
Sbjct: 880 ARLVARG 886
Score = 31.6 bits (70), Expect(5) = e-112
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +2
Query: 1664 YYIAKNKPRRDIIPPKRYAKADLVSYA 1744
Y +A+++ RR++ P RY ADL++YA
Sbjct: 776 YQLARDRVRREVRAPVRYGYADLIAYA 802
Score = 107 bits (267), Expect = 8e-20
Identities = 47/101 (46%), Positives = 67/101 (66%)
Frame = +3
Query: 1221 ISVINPLINHYPSSVVDKKTP*EVWSGIHANYSNLKIFGCSAYAHVDNGKLETRYIKCVF 1400
++ + L+N PSS + KTP E+W+G ANY NL++FGC AY H++ GKLE R +K VF
Sbjct: 615 VNTASYLVNRSPSSAIGFKTPEELWNGKPANYQNLRVFGCPAYLHINQGKLEARALKGVF 674
Query: 1401 LDYKINVKGYKLWCPET*KVIISRDVIFDENAMIHHLPSRD 1523
+ Y VKGYK+WC + K I+SRDV+F E+ ++ D
Sbjct: 675 VGYPDGVKGYKIWCKDQGKCIVSRDVVFHESVLLKESAEHD 715
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 145 bits (367), Expect(4) = e-111
Identities = 72/156 (46%), Positives = 102/156 (65%)
Frame = +3
Query: 2013 GVDFIDVFSPVENHSLIRALLGIVAMHNFELQQLDVKTSFLHGEYEEEIYMH*PEGFIVS 2192
GVD+ ++FSPV H+ IR LL I A ++ E++Q+DVKT+FLHG+ EE+IYM PEGF+ +
Sbjct: 860 GVDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVET 919
Query: 2193 EKENYVCLLKKSLYGLKQSHRQYYKRFDSVMITHDFRRNSYDSCVYFQMSAVGSFXXXXX 2372
KEN VC LKKSLYGLKQS RQ+YK FD+ M+ + R YD CVY+ + G
Sbjct: 920 GKENLVCRLKKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYDCCVYYHVFEDGKVILLLL 979
Query: 2373 XXXXXXIAAKHKEEIKKVKVQFSKEFEIKRLRSCKE 2480
IA + +I+K+K + EF++K L + ++
Sbjct: 980 YVDDMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQK 1015
Score = 143 bits (360), Expect(4) = e-111
Identities = 73/142 (51%), Positives = 92/142 (64%)
Frame = +3
Query: 2883 VIGYVDSDFTGDLEKIRSITGYVFTIGGCAISWKVTLQTIVALSTTEAEYMAITEACRET 3062
V G+VDSDF GDL++ RS GYVFT GG +SWK TLQ + ALSTTEAEYMA+TEA +E
Sbjct: 1149 VAGFVDSDFAGDLDRRRSTAGYVFTCGGGPVSWKATLQAVTALSTTEAEYMALTEASKEA 1208
Query: 3063 ILLK*LCEELSKDLQITTVFCDS*SAIFLTKDRMFHERKKHIDVRYHFCHDIISCGNIVV 3242
I L L +L + V CDS SAI L K+++FH R KHID RYH D + G I+V
Sbjct: 1209 IWLNGLAGQLGVHQEGVVVKCDSQSAIHLAKNQVFHARTKHIDARYHRIRDWVEAGVIIV 1268
Query: 3243 CKISTHDNPVNLMIKTRPIAKF 3308
K+ T DN + + K + K+
Sbjct: 1269 EKVHTDDNAADFLTKPVSVEKY 1290
Score = 136 bits (342), Expect(4) = e-111
Identities = 65/125 (52%), Positives = 88/125 (70%)
Frame = +1
Query: 2461 DLEVVKKILGMEIQIDRITGKLYLSRKGYI*KVICRFNMQNAKSVSTPLAAHFRLSSTLS 2640
DL +KILG+EI+ DR GK++LS++ YI K++ RFNM AK VS PLAAHFRLS+
Sbjct: 1009 DLGAAQKILGIEIRRDRNAGKIWLSQEKYIMKILERFNMAEAKVVSIPLAAHFRLSAEQR 1068
Query: 2641 PQSTDEIDYMSRVPYSSALE*FMYAMVCSHQDLSYDVGAISTYIINPSKEHWKAVQWIFR 2820
P EID M VPY+SA+ MYAM+C+ DL+ + +S Y+ NP K HW+AV+WIF+
Sbjct: 1069 PSDQKEIDMMKNVPYASAVGCLMYAMICTRPDLAQAMSVVSKYMSNPGKRHWEAVKWIFK 1128
Query: 2821 YLRGS 2835
YL+ +
Sbjct: 1129 YLKNT 1133
Score = 50.1 bits (118), Expect(4) = e-111
Identities = 30/74 (40%), Positives = 38/74 (51%)
Frame = +1
Query: 1786 TYLVAISCDVLSRWNIAMQEELESLHKNGT*DLLRLSKDKKVVRYKWXXXXXXXXXXXXX 1965
TY AI + W AM EE+ESLHKN +L+ K++K+V KW
Sbjct: 784 TYEDAIESVESAGWIGAMTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHEDDA 843
Query: 1966 ARYKVRLVAKGNSK 2007
YK RLVAKG S+
Sbjct: 844 ITYKARLVAKGYSQ 857
Score = 91.7 bits (226), Expect = 4e-15
Identities = 45/91 (49%), Positives = 61/91 (67%), Gaps = 3/91 (3%)
Frame = +3
Query: 1239 LINHYPSSVVDKKTP*EVWSGIHANYSNLKIFGCSAYAHV---DNGKLETRYIKCVFLDY 1409
LIN PS ++ K EVWSG +YSNL++FGCSAYAH+ + KLE + ++C+F+ +
Sbjct: 592 LINRSPSRAINFKCAEEVWSGKPVDYSNLRVFGCSAYAHIPKDERTKLEPKSLECLFIGF 651
Query: 1410 KINVKGYKLWCPET*KVIISRDVIFDENAMI 1502
+ VKGYKLW K +ISRDV+FDE I
Sbjct: 652 EKGVKGYKLWDIVNEKKVISRDVVFDEREAI 682
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 187 bits (474), Expect(5) = e-109
Identities = 95/158 (60%), Positives = 116/158 (73%)
Frame = +3
Query: 2007 VPGVDFIDVFSPVENHSLIRALLGIVAMHNFELQQLDVKTSFLHGEYEEEIYMH*PEGFI 2186
+PG+DF DVFSP+ HS IR LLGIVAMH++EL+Q+DVKT+FLHGE EE+IYM PEGF+
Sbjct: 927 IPGIDFNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFV 986
Query: 2187 VSEKENYVCLLKKSLYGLKQSHRQYYKRFDSVMITHDFRRNSYDSCVYFQMSAVGSFXXX 2366
V KEN VC LKKSLYGLKQS RQ+YKRFDS M++ FRR++YDSCVY ++ GS
Sbjct: 987 VLGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKV-VDGSAIYL 1045
Query: 2367 XXXXXXXXIAAKHKEEIKKVKVQFSKEFEIKRLRSCKE 2480
IAAK K EI K+K Q S EF +K L + K+
Sbjct: 1046 LLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKK 1083
Score = 145 bits (365), Expect(5) = e-109
Identities = 67/109 (61%), Positives = 84/109 (77%)
Frame = +3
Query: 1239 LINHYPSSVVDKKTP*EVWSGIHANYSNLKIFGCSAYAHVDNGKLETRYIKCVFLDYKIN 1418
LIN PS DKKTP EVWSG ANYS+L++FGC+AYAHVDNGKLE R IKC+FL Y
Sbjct: 666 LINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSG 725
Query: 1419 VKGYKLWCPET*KVIISRDVIFDENAMIHHLPSRDYSDKIQQKSNTQME 1565
VKGYKLWCPET KV+ISR+V+F E+ ++H PS + + Q+K++ Q+E
Sbjct: 726 VKGYKLWCPETKKVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVE 774
Score = 70.9 bits (172), Expect(5) = e-109
Identities = 38/88 (43%), Positives = 52/88 (59%)
Frame = +1
Query: 1744 LNVTDDIDSSEEHFTYLVAISCDVLSRWNIAMQEELESLHKNGT*DLLRLSKDKKVVRYK 1923
L+V ++I+ + E TY AI D +RW AM +E+ESL KN T + ++L K+KK +R K
Sbjct: 839 LSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCK 898
Query: 1924 WXXXXXXXXXXXXXARYKVRLVAKGNSK 2007
W ARYK RLVAKG S+
Sbjct: 899 WIFKRKEGMSPSDEARYKARLVAKGYSQ 926
Score = 55.5 bits (132), Expect(5) = e-109
Identities = 28/43 (65%), Positives = 33/43 (76%)
Frame = +1
Query: 2461 DLEVVKKILGMEIQIDRITGKLYLSRKGYI*KVICRFNMQNAK 2589
DL KKILGMEI +R +GKLYLS+KGYI KV+ RFNM + K
Sbjct: 1077 DLGAAKKILGMEITRERHSGKLYLSQKGYIKKVLRRFNMHDVK 1119
Score = 33.1 bits (74), Expect(5) = e-109
Identities = 15/26 (57%), Positives = 23/26 (88%), Gaps = 1/26 (3%)
Frame = +2
Query: 1670 IAKNKPRRDIIPPKRY-AKADLVSYA 1744
IAK+KP+R+I PP+RY +A++V+YA
Sbjct: 813 IAKDKPKRNIKPPRRYIEEANIVAYA 838
Score = 199 bits (505), Expect = 2e-47
Identities = 96/156 (61%), Positives = 116/156 (74%)
Frame = +3
Query: 2868 KTRDGVIGYVDSDFTGDLEKIRSITGYVFTIGGCAISWKVTLQTIVALSTTEAEYMAITE 3047
++RDG +GYVDSDF GDL++ RS+TGYVFTIGGC +SWK +LQ VALSTTEAEYMAI+E
Sbjct: 1123 RSRDGFVGYVDSDFAGDLDRRRSLTGYVFTIGGCDVSWKASLQATVALSTTEAEYMAISE 1182
Query: 3048 ACRETILLK*LCEELSKDLQITTVFCDS*SAIFLTKDRMFHERKKHIDVRYHFCHDIISC 3227
AC+E I L+ L EL +FCDS SAI LTKD+MFHER KHIDVRYH +I
Sbjct: 1183 ACKEAIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHIIRGVIVE 1242
Query: 3228 GNIVVCKISTHDNPVNLMIKTRPIAKFEHCLDLIGI 3335
G++ VCKISTHDNP ++M K KFE C L+G+
Sbjct: 1243 GDVKVCKISTHDNPADMMTKPVSATKFELCSSLVGV 1278
>gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]
Length = 1556
Score = 139 bits (351), Expect(4) = e-107
Identities = 70/150 (46%), Positives = 97/150 (64%)
Frame = +3
Query: 2883 VIGYVDSDFTGDLEKIRSITGYVFTIGGCAISWKVTLQTIVALSTTEAEYMAITEACRET 3062
++GY DSD GD++ RS +GYV G A++W+ LQ VALSTTEAE++AITEAC+E
Sbjct: 1119 LVGYTDSDMGGDIDSRRSTSGYVIKFAGGAVAWQSRLQKCVALSTTEAEFIAITEACKEL 1178
Query: 3063 ILLK*LCEELSKDLQITTVFCDS*SAIFLTKDRMFHERKKHIDVRYHFCHDIISCGNIVV 3242
+ +K L +ELS +FCDS SAI+L K+ FH R KHIDVRYH+ D + + +
Sbjct: 1179 LWVKKLLQELSFVQDKYLLFCDSQSAIYLGKNSTFHSRSKHIDVRYHWIRDALEARLLEL 1238
Query: 3243 CKISTHDNPVNLMIKTRPIAKFEHCLDLIG 3332
K+ T DN ++M K+ P +K E C + G
Sbjct: 1239 AKVHTDDNCADMMTKSLPRSKSETCCKIAG 1268
Score = 136 bits (342), Expect(4) = e-107
Identities = 67/156 (42%), Positives = 100/156 (64%)
Frame = +3
Query: 2013 GVDFIDVFSPVENHSLIRALLGIVAMHNFELQQLDVKTSFLHGEYEEEIYMH*PEGFIVS 2192
G+DF ++FSPV S IR +L + A + E++Q+DVKT+FLHG+ EEEIYM P+GF+V
Sbjct: 832 GIDFNEIFSPVVKMSSIRIVLSLAATLDLEVEQMDVKTAFLHGDLEEEIYMKQPDGFLVE 891
Query: 2193 EKENYVCLLKKSLYGLKQSHRQYYKRFDSVMITHDFRRNSYDSCVYFQMSAVGSFXXXXX 2372
KE++VC L+KSLYGLKQ+ RQ+YK+F+SVM +++ + D CV+ + A F
Sbjct: 892 GKEDHVCRLRKSLYGLKQAPRQWYKKFESVMCEQGYKKTTSDHCVFVKKFANDDFIILLL 951
Query: 2373 XXXXXXIAAKHKEEIKKVKVQFSKEFEIKRLRSCKE 2480
I K I ++K Q S+ F +K + + K+
Sbjct: 952 YVDDILIVGKDISMINRLKKQLSESFAMKDMGAAKQ 987
Score = 134 bits (337), Expect(4) = e-107
Identities = 64/126 (50%), Positives = 89/126 (70%)
Frame = +1
Query: 2461 DLEVVKKILGMEIQIDRITGKLYLSRKGYI*KVICRFNMQNAKSVSTPLAAHFRLSSTLS 2640
D+ K+ILG+ I DR KL+LS++ Y+ +V+ RF M+NAK VSTPLA HF+LS+ S
Sbjct: 981 DMGAAKQILGIRIMRDRQEKKLWLSQENYVKRVLQRFQMENAKVVSTPLATHFKLSTKQS 1040
Query: 2641 PQSTDEIDYMSRVPYSSALE*FMYAMVCSHQDLSYDVGAISTYIINPSKEHWKAVQWIFR 2820
P E M R+PY+SA+ MYAMVC+ D+++ VG +S ++ NP +EHW AV+WI R
Sbjct: 1041 PSYEYEKSDMQRIPYASAVGSLMYAMVCTRPDIAHVVGTVSRFMSNPGREHWNAVKWILR 1100
Query: 2821 YLRGST 2838
YLRG+T
Sbjct: 1101 YLRGTT 1106
Score = 53.5 bits (127), Expect(4) = e-107
Identities = 29/70 (41%), Positives = 39/70 (55%)
Frame = +1
Query: 1789 YLVAISCDVLSRWNIAMQEELESLHKNGT*DLLRLSKDKKVVRYKWXXXXXXXXXXXXXA 1968
YL A+ + +W AMQ+E++SLH N T DL++L KDKK + +W
Sbjct: 758 YLEAMESEEKKKWLDAMQDEMKSLHDNHTFDLVKLPKDKKALENRW-IYRVKQESNSTSP 816
Query: 1969 RYKVRLVAKG 1998
RYK RLV KG
Sbjct: 817 RYKARLVVKG 826
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease [Nicotiana tabacum]
gi|20045|emb|CAA32025.1| unnamed protein product
[Nicotiana tabacum]
Length = 1328
Score = 145 bits (366), Expect(4) = e-107
Identities = 73/149 (48%), Positives = 101/149 (67%)
Frame = +3
Query: 2889 GYVDSDFTGDLEKIRSITGYVFTIGGCAISWKVTLQTIVALSTTEAEYMAITEACRETIL 3068
GY D+D GD++ +S TGY+FT G AISW+ LQ VALSTTEAEY+A TE +E I
Sbjct: 1177 GYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIW 1236
Query: 3069 LK*LCEELSKDLQITTVFCDS*SAIFLTKDRMFHERKKHIDVRYHFCHDIISCGNIVVCK 3248
LK +EL + V+CDS SAI L+K+ M+H R KHIDVRYH+ +++ ++ V K
Sbjct: 1237 LKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLK 1296
Query: 3249 ISTHDNPVNLMIKTRPIAKFEHCLDLIGI 3335
IST++NP +++ K P KFE C +L+G+
Sbjct: 1297 ISTNENPADMLTKVVPRNKFELCKELVGM 1325
Score = 138 bits (347), Expect(4) = e-107
Identities = 66/126 (52%), Positives = 94/126 (74%)
Frame = +1
Query: 2461 DLEVVKKILGMEIQIDRITGKLYLSRKGYI*KVICRFNMQNAKSVSTPLAAHFRLSSTLS 2640
DL ++ILGM+I +R + KL+LS++ YI +V+ RFNM+NAK VSTPLA H +LS +
Sbjct: 1037 DLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMC 1096
Query: 2641 PQSTDEIDYMSRVPYSSALE*FMYAMVCSHQDLSYDVGAISTYIINPSKEHWKAVQWIFR 2820
P + +E M++VPYSSA+ MYAMVC+ D+++ VG +S ++ NP KEHW+AV+WI R
Sbjct: 1097 PTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILR 1156
Query: 2821 YLRGST 2838
YLRG+T
Sbjct: 1157 YLRGTT 1162
Score = 133 bits (335), Expect(4) = e-107
Identities = 69/151 (45%), Positives = 95/151 (62%)
Frame = +3
Query: 2013 GVDFIDVFSPVENHSLIRALLGIVAMHNFELQQLDVKTSFLHGEYEEEIYMH*PEGFIVS 2192
G+DF ++FSPV + IR +L + A + E++QLDVKT+FLHG+ EEEIYM PEGF V+
Sbjct: 888 GIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVA 947
Query: 2193 EKENYVCLLKKSLYGLKQSHRQYYKRFDSVMITHDFRRNSYDSCVYFQMSAVGSFXXXXX 2372
K++ VC L KSLYGLKQ+ RQ+Y +FDS M + + + D CVYF+ + +F
Sbjct: 948 GKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLL 1007
Query: 2373 XXXXXXIAAKHKEEIKKVKVQFSKEFEIKRL 2465
I K K I K+K SK F++K L
Sbjct: 1008 YVDDMLIVGKDKGLIAKLKGDLSKSFDMKDL 1038
Score = 45.8 bits (107), Expect(4) = e-107
Identities = 26/55 (47%), Positives = 31/55 (56%)
Frame = +1
Query: 1834 AMQEELESLHKNGT*DLLRLSKDKKVVRYKWXXXXXXXXXXXXXARYKVRLVAKG 1998
AMQEE+ESL KNGT L+ L K K+ ++ KW RYK RLV KG
Sbjct: 829 AMQEEMESLQKNGTYKLVELPKGKRPLKCKW-VFKLKKDGDCKLVRYKARLVVKG 882
Score = 75.5 bits (184), Expect = 3e-10
Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Frame = +3
Query: 1239 LINHYPSSVVDKKTP*EVWSGIHANYSNLKIFGCSAYAHV---DNGKLETRYIKCVFLDY 1409
LIN PS + + P VW+ +YS+LK+FGC A+AHV KL+ + I C+F+ Y
Sbjct: 620 LINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGY 679
Query: 1410 KINVKGYKLWCPET*KVIISRDVIFDENAMIHHLPSRDYSDKIQ 1541
GY+LW P KVI SRDV+F E+ + + D S+K++
Sbjct: 680 GDEEFGYRLWDPVKKKVIRSRDVVFRESEV---RTAADMSEKVK 720
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 150 bits (379), Expect(4) = e-107
Identities = 76/151 (50%), Positives = 102/151 (67%)
Frame = +3
Query: 2883 VIGYVDSDFTGDLEKIRSITGYVFTIGGCAISWKVTLQTIVALSTTEAEYMAITEACRET 3062
V GYVDSDF GD +K +S TGYVFT+ G A+SW LQT+VALSTTEAEYMA T+AC+E
Sbjct: 1152 VRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEA 1211
Query: 3063 ILLK*LCEELSKDLQITTVFCDS*SAIFLTKDRMFHERKKHIDVRYHFCHDIISCGNIVV 3242
I ++ L EEL + TV+CDS SA+ + ++ FH R KHI V+YHF +++ G++ +
Sbjct: 1212 IWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDM 1271
Query: 3243 CKISTHDNPVNLMIKTRPIAKFEHCLDLIGI 3335
KI T+DN + M K+ KF C L G+
Sbjct: 1272 QKIHTNDNLADAMTKSINTDKFIWCRSLYGL 1302
Score = 135 bits (340), Expect(4) = e-107
Identities = 69/151 (45%), Positives = 96/151 (63%)
Frame = +3
Query: 2013 GVDFIDVFSPVENHSLIRALLGIVAMHNFELQQLDVKTSFLHGEYEEEIYMH*PEGFIVS 2192
G+DF ++FSPV + IR +L + A + L+QLDVKT+FLHGE EEEIYM PEGF
Sbjct: 865 GIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQ 924
Query: 2193 EKENYVCLLKKSLYGLKQSHRQYYKRFDSVMITHDFRRNSYDSCVYFQMSAVGSFXXXXX 2372
KEN VC L KSLYGLKQ+ R +YKRFDS +I+ D+ R S D C Y++ F
Sbjct: 925 GKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGNDFIILLL 984
Query: 2373 XXXXXXIAAKHKEEIKKVKVQFSKEFEIKRL 2465
+ +K+ ++++K Q ++EF++K L
Sbjct: 985 YVDDMLVVGPNKDRVQELKAQLAREFDMKDL 1015
Score = 127 bits (320), Expect(4) = e-107
Identities = 62/126 (49%), Positives = 89/126 (70%)
Frame = +1
Query: 2461 DLEVVKKILGMEIQIDRITGKLYLSRKGYI*KVICRFNMQNAKSVSTPLAAHFRLSSTLS 2640
DL KILGM+I DR K++LS+K Y+ KV+ RFNMQ+ K +STPL +F+LSS +S
Sbjct: 1014 DLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMS 1073
Query: 2641 PQSTDEIDYMSRVPYSSALE*FMYAMVCSHQDLSYDVGAISTYIINPSKEHWKAVQWIFR 2820
P + E MSRVPY+SA+ MYAM+C+ D++ VG +S ++ +P KEHW AV+ I R
Sbjct: 1074 PSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMR 1133
Query: 2821 YLRGST 2838
Y++G++
Sbjct: 1134 YIKGTS 1139
Score = 48.1 bits (113), Expect(4) = e-107
Identities = 28/79 (35%), Positives = 40/79 (50%)
Frame = +1
Query: 1762 IDSSEEHFTYLVAISCDVLSRWNIAMQEELESLHKNGT*DLLRLSKDKKVVRYKWXXXXX 1941
I E T+ A++ S+W AM EE+E+LH+N T +L+ L K +K + KW
Sbjct: 782 ITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKW-VYKI 840
Query: 1942 XXXXXXXXARYKVRLVAKG 1998
RY+ RLV KG
Sbjct: 841 KRDGNDQVERYRARLVVKG 859
Score = 90.9 bits (224), Expect = 8e-15
Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 4/115 (3%)
Frame = +3
Query: 1239 LINHYPSSVVDKKTP*EVWSGIHANYSNLKIFGCSAYAHVDNG---KLETRYIKCVFLDY 1409
+IN PS+ +D KTP E+W G +YS+L +FGC Y ++ KL+ + KC+FL Y
Sbjct: 620 VINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGY 679
Query: 1410 KINVKGYKLWCPET*KVIISRDVIFDENAMIHHLPSRDYSDKIQQKSN-TQMEFK 1571
NVKGY+LW P KV++SRDV+F EN L S+ +D +++ QME K
Sbjct: 680 ADNVKGYRLWDPTARKVVVSRDVVFAEN----ELQSKQKNDSTSKETAIVQMEEK 730
>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 983
Score = 185 bits (469), Expect(5) = e-106
Identities = 93/158 (58%), Positives = 116/158 (73%)
Frame = +3
Query: 2007 VPGVDFIDVFSPVENHSLIRALLGIVAMHNFELQQLDVKTSFLHGEYEEEIYMH*PEGFI 2186
+P +DF DVFSP+ HS IR LL IVAMH++EL+Q+DVKT+FLHGE EE+IYM PEGF+
Sbjct: 634 IPSIDFNDVFSPIVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFV 693
Query: 2187 VSEKENYVCLLKKSLYGLKQSHRQYYKRFDSVMITHDFRRNSYDSCVYFQMSAVGSFXXX 2366
V KEN VC LKKSLYGLKQS RQ+YKRFDS M++ FRR++YD+CVY ++ GS
Sbjct: 694 VPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDNCVYLKV-VDGSAIYL 752
Query: 2367 XXXXXXXXIAAKHKEEIKKVKVQFSKEFEIKRLRSCKE 2480
IAAK K EI+K+K Q S EFE+K L + K+
Sbjct: 753 LLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKK 790
Score = 113 bits (282), Expect(5) = e-106
Identities = 61/92 (66%), Positives = 70/92 (76%)
Frame = +1
Query: 2461 DLEVVKKILGMEIQIDRITGKLYLSRKGYI*KVICRFNMQNAKSVSTPLAAHFRLSSTLS 2640
DL KKILGMEI +R +GKLYLS+KGYI KV+ RFNM +AK VSTPLAAHFR SS L
Sbjct: 784 DLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRSSSDLC 843
Query: 2641 PQSTDEIDYMSRVPYSSALE*FMYAMVCSHQD 2736
PQS +I+YMSRVPYSSA+ MYAM +D
Sbjct: 844 PQSDYDIEYMSRVPYSSAVGSLMYAMFGRSRD 875
Score = 81.6 bits (200), Expect(5) = e-106
Identities = 43/109 (39%), Positives = 59/109 (54%)
Frame = +3
Query: 1239 LINHYPSSVVDKKTP*EVWSGIHANYSNLKIFGCSAYAHVDNGKLETRYIKCVFLDYKIN 1418
L+N PS +DKKTP +E R IKC+FL Y
Sbjct: 402 LVNRSPSYAIDKKTP-----------------------------IEPRAIKCIFLGYPSG 432
Query: 1419 VKGYKLWCPET*KVIISRDVIFDENAMIHHLPSRDYSDKIQQKSNTQME 1565
VKGYKLWCPET KV+ISR+V+F E+ ++H PS + + Q+K++ Q+E
Sbjct: 433 VKGYKLWCPETKKVVISRNVVFHESVILHDKPSTNVPVESQEKTSVQVE 481
Score = 68.9 bits (167), Expect(5) = e-106
Identities = 37/88 (42%), Positives = 51/88 (57%)
Frame = +1
Query: 1744 LNVTDDIDSSEEHFTYLVAISCDVLSRWNIAMQEELESLHKNGT*DLLRLSKDKKVVRYK 1923
L+V ++I+ + E Y AI D +RW M +E+ESL KN T +L++L K+KK +R K
Sbjct: 546 LSVAEEIEGNAEPSIYSEAIVSDDCNRWITTMHDEMESLEKNHTWELVKLPKEKKSIRCK 605
Query: 1924 WXXXXXXXXXXXXXARYKVRLVAKGNSK 2007
W ARYK RLVAKG S+
Sbjct: 606 WIFKRKEGMSPSDEARYKARLVAKGYSQ 633
Score = 33.1 bits (74), Expect(5) = e-106
Identities = 15/26 (57%), Positives = 23/26 (88%), Gaps = 1/26 (3%)
Frame = +2
Query: 1670 IAKNKPRRDIIPPKRY-AKADLVSYA 1744
IAK+KP+R+I PP+RY +A++V+YA
Sbjct: 520 IAKDKPKRNIKPPRRYIEEANIVAYA 545
Score = 127 bits (320), Expect = 6e-26
Identities = 68/156 (43%), Positives = 89/156 (57%)
Frame = +3
Query: 2868 KTRDGVIGYVDSDFTGDLEKIRSITGYVFTIGGCAISWKVTLQTIVALSTTEAEYMAITE 3047
++RD ++GYVDSDF GDL++ RS+TGYVFTIGGCA+SWK +LQ VALSTTEAEYM+I+E
Sbjct: 872 RSRDELVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEYMSISE 931
Query: 3048 ACRETILLK*LCEELSKDLQITTVFCDS*SAIFLTKDRMFHERKKHIDVRYHFCHDIISC 3227
AC+E I L+ +I+
Sbjct: 932 ACKEAIWLR----------------------------------------------GVIAE 945
Query: 3228 GNIVVCKISTHDNPVNLMIKTRPIAKFEHCLDLIGI 3335
G++ VCKISTHDN ++M K P KFE C L+G+
Sbjct: 946 GDVKVCKISTHDNLADMMTKPVPATKFELCSSLVGV 981
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 148 bits (374), Expect(4) = e-106
Identities = 75/151 (49%), Positives = 101/151 (66%)
Frame = +3
Query: 2883 VIGYVDSDFTGDLEKIRSITGYVFTIGGCAISWKVTLQTIVALSTTEAEYMAITEACRET 3062
V GYVDSDF GD +K +S TGYVFT+ G A+SW LQT+VALSTTEAEYMA T+AC+E
Sbjct: 1152 VWGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEA 1211
Query: 3063 ILLK*LCEELSKDLQITTVFCDS*SAIFLTKDRMFHERKKHIDVRYHFCHDIISCGNIVV 3242
I ++ L EEL + TV+CDS SA+ + ++ FH R KHI V+YHF +++ G++ +
Sbjct: 1212 IWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDM 1271
Query: 3243 CKISTHDNPVNLMIKTRPIAKFEHCLDLIGI 3335
KI T+DN ++M K KF C G+
Sbjct: 1272 QKIHTNDNLADVMTKPINTDKFVWCRSSYGL 1302
Score = 135 bits (341), Expect(4) = e-106
Identities = 69/151 (45%), Positives = 96/151 (63%)
Frame = +3
Query: 2013 GVDFIDVFSPVENHSLIRALLGIVAMHNFELQQLDVKTSFLHGEYEEEIYMH*PEGFIVS 2192
G+DF ++FSPV + IR +L + A + L+QLDVKT+FLHGE EEEIYM PEGF
Sbjct: 865 GIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQ 924
Query: 2193 EKENYVCLLKKSLYGLKQSHRQYYKRFDSVMITHDFRRNSYDSCVYFQMSAVGSFXXXXX 2372
KEN VC L KSLYGLKQ+ R +YKRFDS +I+ D+ R S D C Y++ F
Sbjct: 925 GKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDFIILLL 984
Query: 2373 XXXXXXIAAKHKEEIKKVKVQFSKEFEIKRL 2465
+ +K+ ++++K Q ++EF++K L
Sbjct: 985 YVDDMLVVGPNKDRVQELKAQLAREFDMKDL 1015
Score = 127 bits (320), Expect(4) = e-106
Identities = 62/126 (49%), Positives = 89/126 (70%)
Frame = +1
Query: 2461 DLEVVKKILGMEIQIDRITGKLYLSRKGYI*KVICRFNMQNAKSVSTPLAAHFRLSSTLS 2640
DL KILGM+I DR K++LS+K Y+ KV+ RFNMQ+ K +STPL +F+LSS +S
Sbjct: 1014 DLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMS 1073
Query: 2641 PQSTDEIDYMSRVPYSSALE*FMYAMVCSHQDLSYDVGAISTYIINPSKEHWKAVQWIFR 2820
P + E MSRVPY+SA+ MYAM+C+ D++ VG +S ++ +P KEHW AV+ I R
Sbjct: 1074 PSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMR 1133
Query: 2821 YLRGST 2838
Y++G++
Sbjct: 1134 YIKGTS 1139
Score = 48.1 bits (113), Expect(4) = e-106
Identities = 28/79 (35%), Positives = 40/79 (50%)
Frame = +1
Query: 1762 IDSSEEHFTYLVAISCDVLSRWNIAMQEELESLHKNGT*DLLRLSKDKKVVRYKWXXXXX 1941
I E T+ A++ S+W AM EE+E+LH+N T +L+ L K +K + KW
Sbjct: 782 ITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKW-VYKI 840
Query: 1942 XXXXXXXXARYKVRLVAKG 1998
RY+ RLV KG
Sbjct: 841 KRDGNDQVERYRARLVVKG 859
Score = 90.1 bits (222), Expect = 1e-14
Identities = 49/115 (42%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Frame = +3
Query: 1239 LINHYPSSVVDKKTP*EVWSGIHANYSNLKIFGCSAYAHVDNG---KLETRYIKCVFLDY 1409
+IN PS+ +D KTP E+W G +YS+L +FGC Y ++ KL+ + KC+FL Y
Sbjct: 620 VINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQEKTKLDPKSRKCIFLGY 679
Query: 1410 KINVKGYKLWCPET*KVIISRDVIFDENAMIHHLPSRDYSDKIQQKSN-TQMEFK 1571
NVKGY+LW P KV++SRDV+F EN L S +D +++ QME K
Sbjct: 680 ADNVKGYRLWDPTARKVVVSRDVVFAEN----ELQSEQKNDSTSKETAIVQMEEK 730