BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia22_contig00011442
         (4606 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA22288.1| polyprotein [Oryza australiensis]                     336   e-153
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc...   321   e-147
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...   318   e-146
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]     313   e-144
emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]         320   e-143
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc...   315   e-135
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]   392   e-105
gb|ADJ18449.1| gag/pol protein [Bryonia dioica]                       385   e-103
emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]   326   1e-85
gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subc...   174   5e-81
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   268   4e-76
gb|AAK52163.1|AC084831_17 putative polyprotein [Oryza sativa Jap...   158   7e-76
gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subc...   227   9e-76
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja...   234   1e-75
gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis D...   238   2e-74
gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subc...   233   8e-74
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc...   252   3e-72
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc...   234   2e-71
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]     252   1e-68
emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]   268   4e-68

>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  336 bits (861), Expect(2) = e-153
 Identities = 219/550 (39%), Positives = 301/550 (54%), Gaps = 28/550 (5%)
 Frame = -1

Query: 2110 LQESRKLNEGQFTITXXXXXXXXXXXXXXVYSYFSSSRRLIFKDCYYVPQMKRNLISISC 1931
            ++ SR L  G+  +               V  +  S   L   +CY VP + +N+IS SC
Sbjct: 319  MRRSRGLRRGEVNLRVGNGASVATVAVGTVPLHLPSGLVLELNNCYCVPTLCQNVISASC 378

Query: 1930 LIGQGYSLDF-APNKALYILMNKAPICAGYLMNGLYILNYSTNEINNTSANHNKQNTYHT 1754
            L  +GY  DF + N    I +         L+NGLY+LN   + I N   N  +Q +   
Sbjct: 379  LQAEGY--DFRSMNNGCSIYLRDMFYFHAPLVNGLYVLNLEASPIYNI--NTERQLSNDI 434

Query: 1753 GDTYLWHLRLGHINLNRIQRLTKDGPLNSIEVEPLQVCDSCLEGKMTKRSFLAKGHRAKE 1574
              T++WH RLGHIN  R+++L KDG L+S + E  + C+SCL GKMTK  F     RA +
Sbjct: 435  NPTFIWHCRLGHINKKRMEKLHKDGLLHSFDFESFETCESCLLGKMTKAPFTGHSERASD 494

Query: 1573 VLELVHSDVCGPMNIPARGGYEYFITFTDDYSRFGYIYLMTRKSEAFEKFKAYRTEVEKH 1394
            +L LVH+DVCGPM+  ARGGY+YFITFTDD+SR+GYIYLM  KSE+FEKFK ++ EV+ H
Sbjct: 495  LLALVHTDVCGPMSSTARGGYQYFITFTDDFSRYGYIYLMRHKSESFEKFKEFQNEVQNH 554

Query: 1393 LSKSIKTFRSDRGGEYLSGEFRDYLTENDIVSQLSTPGTPQQNRVSERRNRTLLDMVRSM 1214
            L K+IK  RSDRGGEY+S EF ++L +  IV QL+ PGTPQ N VSERRNRTLLDMVRSM
Sbjct: 555  LGKTIKFLRSDRGGEYVSQEFGNHLKDCGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSM 614

Query: 1213 MSFSNSTYLILWDILEAPGDTNSIV-----------L*IGRPFVITNTTFLE----DKYN 1079
            MS S+         LE    T + V           +  G+P    + +FL+    + Y 
Sbjct: 615  MSQSDLPLSFWGYALETAALTLNRVPSKSVEKTPYEIWTGQP---PSLSFLKIWGCEAYV 671

Query: 1078 NKCQSKSMVVLE*MSGSDSTTLI--PKT*PS----DRQPMVSQTPR------ERYLSGRN 935
             + QS  +        SD   ++  PK        +R+       R      + +LS R 
Sbjct: 672  KRLQSDKLT-----PKSDKCFVVGYPKETKGYYFYNREQAKVFVARHGVFLEKEFLSRRV 726

Query: 934  DSLFNPIDQENVQGNDEVFVSPERDTNIDENVTIPNEATVQDPPPLRQSQRVIRKPSRYL 755
              +   +  E VQ   E   +       D++V  P    V D P  R+S+R  R P RY 
Sbjct: 727  SGI--RVHLEEVQETPETVSATTEPQQEDQSVAPP----VVDTPAPRRSERSRRAPDRY- 779

Query: 754  FVGESKQAISVKQVDDPISYKEAINDVDADLWKLAMNTEMESMHSNQVWELVDAPKGIKS 575
              G  ++ I +   D+P +Y+EA+   D++ W  AM +E+ESM+ NQVW LVD P G+K+
Sbjct: 780  -TGAEQRDILLLDNDEPKTYEEAMVGHDSNKWLGAMKSEIESMYDNQVWNLVDPPDGVKT 838

Query: 574  IGCKWVYKKK 545
            I CKW++KKK
Sbjct: 839  IECKWLFKKK 848



 Score =  238 bits (606), Expect(2) = e-153
 Identities = 114/179 (63%), Positives = 141/179 (78%)
 Frame = -2

Query: 552  KKKRGVDGKVETFKARLVAKGFT*REGIDCDETFSPVAMLKSIRILLSIAAHYDYEVWQM 373
            KKK  +DG V  +KARLVAKGF   +G+D DETFSPVAMLKSIRI+L+IAA++DYE+WQM
Sbjct: 846  KKKADMDGNVHIYKARLVAKGFKQIQGVDYDETFSPVAMLKSIRIILAIAAYFDYEIWQM 905

Query: 372  DVKTAFLNGHLEECIYMVQPDGFVERGHESKVCKLQRSIYGLKQASRSWNKRFDEVIKTY 193
            DVKTAFLNG+L E +YM+QP GFV+     K+CKLQ+SIYGLKQASRSWN RFDEVIK +
Sbjct: 906  DVKTAFLNGNLSEDVYMIQPQGFVDPESPGKICKLQKSIYGLKQASRSWNIRFDEVIKGF 965

Query: 192  DFDQNFDEPCFYKKIQDRKVIFLVLYVDDILLIGNDVGMLSSTKAWLAQQFSYESFGQS 16
             F +N +E C YKK+    ++FL+LYVDDILLIGND+ ML S K+ L   FS +  G++
Sbjct: 966  GFIKNEEEACVYKKVSGSAIVFLILYVDDILLIGNDIPMLESVKSSLKNSFSMKDLGEA 1024



 Score =  137 bits (345), Expect = 8e-29
 Identities = 78/257 (30%), Positives = 132/257 (51%), Gaps = 6/257 (2%)
 Frame = -2

Query: 2943 ILKQNQLTGENYVDWKRNLMIVLTVEKIDFVLEEDWPEQPTETTSKDMRDSYDRWVAADK 2764
            IL++ +L G N++DW RNL IVL  E+ ++VLE  +PE+     +   R  +++      
Sbjct: 15   ILEKEKLNGTNFMDWYRNLRIVLKQERKEYVLEVPYPEELPNNATATARRGFEKHTNDAL 74

Query: 2763 LARCYILASMSNVLQQKHDGLETSYDIMKSLKNMFAHQSRRARFEVIRTLQNIRMKPGTP 2584
               C +LA+MS  LQ++++  + ++  ++ L+ MF +Q+R  RF   ++L   R+  G P
Sbjct: 75   DISCLMLATMSPELQKQYESSD-AHTTIQGLRGMFENQARDERFNTSKSLFACRLVEGNP 133

Query: 2583 VKDHMLIMIGHFNVAENLGATIDQDTQVDMVLNSLPDMFSQFTVDYHLHKMDMPLTELMN 2404
            V  H++ MIG+    E LG  + Q+   D++L SLP  F  F ++YH++ MD  L EL  
Sbjct: 134  VSPHVIKMIGYIESLEKLGFPLSQELATDVILQSLPPSFEPFILNYHMNNMDRTLAELHG 193

Query: 2403 ELQNVESGLKSKGGDAYAAIXXXXXXXXXXXXXXXXXRANKKQESNKTNADGKPKGK--- 2233
             L+ VE  ++  G   +  +                 +    + ++ +NA    KG    
Sbjct: 194  MLKTVEESIQKNG--HHVMMMQNAKRKPPVKKLCTKRKLTPDEIASASNAKKGKKGSAAS 251

Query: 2232 ---CFSCGEKGHWKKDC 2191
               CF C E GHWK++C
Sbjct: 252  DAVCFYCKETGHWKRNC 268


>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1248

 Score =  321 bits (823), Expect(2) = e-147
 Identities = 197/506 (38%), Positives = 271/506 (53%), Gaps = 38/506 (7%)
 Frame = -1

Query: 1951 NLISISCLIGQGYSLDFAPNKALYILMNKAPICAGYLMNGLYILNYSTNEINNTSANHNK 1772
            N+IS SCL  +GY      N    +  N        +MNGLYI+N     + N +A   +
Sbjct: 337  NVISTSCLQAEGYGFRSVDN-GCSVYYNDIFYFHAPMMNGLYIVNLDGCSVYNINAKRQR 395

Query: 1771 QNTYHTGDTYLWHLRLGHINLNRIQRLTKDGPLNSIEVEPLQVCDSCLEGKMTKRSFLAK 1592
             N  +   T++WH  LGHIN  RI++L +DG L+S + E  + C+SCL GKMTK  F  +
Sbjct: 396  PNNLNP--TFIWHCCLGHINEKRIEKLHRDGLLHSFDFESFKTCESCLLGKMTKAPFTGQ 453

Query: 1591 GHRAKEVLELVHSDVCGPMNIPARGGYEYFITFTDDYSRFGYIYLMTRKSEAFEKFKAYR 1412
              RA E+L LVH+DVCGPM+  ARGG+ YFITFTD++SR+GY+YLM  KSE+FEKF+ ++
Sbjct: 454  SERASELLGLVHTDVCGPMSSTARGGFGYFITFTDEFSRYGYVYLMRHKSESFEKFQEFQ 513

Query: 1411 TEVEKHLSKSIKTFRSDRGGEYLSGEFRDYLTENDIVSQLSTPGTPQQNRVSERRNRTLL 1232
             EV+ HL K+IK  RSDRGGEYLS E+ ++L E  IV QL+ PGTPQ N VSERRNR LL
Sbjct: 514  NEVQNHLGKTIKYLRSDRGGEYLSLEYGNHLKECGIVPQLTPPGTPQWNAVSERRNRILL 573

Query: 1231 DMVRSMMSFSNSTYLILWDILEAPGDTNSIV----------------------L*I---- 1130
            DMVRSMMS ++         LE    T + V                      L I    
Sbjct: 574  DMVRSMMSQTDMPLSFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWCCE 633

Query: 1129 ------------GRPFVITNTTFLEDKYNNKCQSKSMVVLE*MSGSDSTTLIPKT*PSDR 986
                        G+ FV  +  FLE ++ ++  S SMV                     R
Sbjct: 634  ETKGYYFYNREEGKVFVARHGVFLEKEFISRKDSGSMV---------------------R 672

Query: 985  QPMVSQTPRERYLSGRNDSLFNPIDQENVQGNDEVFVSPERDTNIDENVTIPNEATVQDP 806
               + +TP     S +       ++Q+ VQ  ++V V P                 V + 
Sbjct: 673  LKEIQETPENASTSTQPQ-----VEQDVVQQVEQVVVEP-----------------VVEA 710

Query: 805  PPLRQSQRVIRKPSRYLFVGESKQAISVKQVDDPISYKEAINDVDADLWKLAMNTEMESM 626
            P  R+S+R+ R P+RY  +   ++ I +   D+P +Y+EA+   D + W  AM +E+ESM
Sbjct: 711  PASRRSERIRRTPARYALLTSGQRDILLLDNDEPTTYEEAMVGPDTEKWLGAMKSEIESM 770

Query: 625  HSNQVWELVDAPKGIKSIGCKWVYKK 548
            H NQVW LVD P G+K+I CKW++KK
Sbjct: 771  HVNQVWNLVDPPDGVKAIECKWIFKK 796



 Score =  231 bits (588), Expect(2) = e-147
 Identities = 113/179 (63%), Positives = 137/179 (76%)
 Frame = -2

Query: 552  KKKRGVDGKVETFKARLVAKGFT*REGIDCDETFSPVAMLKSIRILLSIAAHYDYEVWQM 373
            KK   VDG V  + ARLVAKGF   +G+D DETFSPVAMLKSIRI+L+IAA++DYE+WQM
Sbjct: 795  KKMTDVDGTVHIYNARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQM 854

Query: 372  DVKTAFLNGHLEECIYMVQPDGFVERGHESKVCKLQRSIYGLKQASRSWNKRFDEVIKTY 193
            DVKTAFLNG+L+E +YM QP GFV+     K+CKLQ+SIY LKQASRSWN RFDEV+K  
Sbjct: 855  DVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYRLKQASRSWNIRFDEVVKAL 914

Query: 192  DFDQNFDEPCFYKKIQDRKVIFLVLYVDDILLIGNDVGMLSSTKAWLAQQFSYESFGQS 16
             F +N +EPC YKKI    ++FL+LYVDDILLIGND+ ML S K  L   FS +  G++
Sbjct: 915  GFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKYSFSMKDLGEA 973



 Score =  120 bits (302), Expect = 8e-24
 Identities = 73/253 (28%), Positives = 122/253 (48%), Gaps = 3/253 (1%)
 Frame = -2

Query: 2943 ILKQNQLTGENYVDWKRNLMIVLTVEKIDFVLEEDWPEQPTETTSKDMRDSYDRWVAADK 2764
            IL++ +LTG N++DW RNL IVL  E  +FVL E +P           R  +++      
Sbjct: 81   ILEKEKLTGTNFMDWYRNLRIVLRQEHKEFVLTEPFPANLPNNAPAAQRREHEKRCNDYL 140

Query: 2763 LARCYILASMSNVLQQKHDGLETSYDIMKSLKNMFAHQSRRARFEVIRTLQNIRMKPGTP 2584
               C +LA+MS  LQ++++ L+ ++ I+  L+NMF  Q+R  RF   ++L   R+  G  
Sbjct: 141  DISCLMLATMSPELQRQYEALD-AHTIITGLRNMFEDQARAERFNTSKSLFACRLAEGNL 199

Query: 2583 VKDHMLIMIGHFNVAENLGATIDQDTQVDMVLNSLPDMFSQFTVDYHLHKMDMPLTELMN 2404
            V  H++ MIG+    + LG  + ++   D++L SLP  F  F ++++++ ++  L EL  
Sbjct: 200  VSPHVIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTLAELHG 259

Query: 2403 ELQNVESGLKSKGGDAYAAIXXXXXXXXXXXXXXXXXRANKKQESNKTNAD--GKPK-GK 2233
             L+  E  +K                                  ++KT     G  K  +
Sbjct: 260  MLKTAEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTSNSKTKVQKTGSAKDAE 319

Query: 2232 CFSCGEKGHWKKD 2194
            CF C E GHWK++
Sbjct: 320  CFFCKETGHWKRN 332


>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score =  318 bits (816), Expect(2) = e-146
 Identities = 193/479 (40%), Positives = 263/479 (54%)
 Frame = -1

Query: 1981 DCYYVPQMKRNLISISCLIGQGYSLDFAPNKALYILMNKAPICAGYLMNGLYILNYSTNE 1802
            +CYYVP M RN+IS SCL+ +GY      +    I +N        ++NGL+ILN     
Sbjct: 450  NCYYVPAMSRNIISASCLMTEGYKF-IIEDHGCSIFLNDMFYGYAPVLNGLFILNLDDAP 508

Query: 1801 INNTSANHNKQNTYHTGDTYLWHLRLGHINLNRIQRLTKDGPLNSIEVEPLQVCDSCLEG 1622
            I N +A   + N  ++  T++WH RLGHI+  R+++L  DG LNS ++E  + C+SC+ G
Sbjct: 509  IFNINAKRLRPNNMNS--TFIWHCRLGHISEKRMKKLHDDGILNSFDLESFETCESCILG 566

Query: 1621 KMTKRSFLAKGHRAKEVLELVHSDVCGPMNIPARGGYEYFITFTDDYSRFGYIYLMTRKS 1442
            KMTK  F  +  RA ++L L+H+DVCGPM+  ARGG++YFITFTDDYSR+GYIYLM  KS
Sbjct: 567  KMTKTPFTGRNERASDLLALIHTDVCGPMSTTARGGFQYFITFTDDYSRYGYIYLMRHKS 626

Query: 1441 EAFEKFKAYRTEVEKHLSKSIKTFRSDRGGEYLSGEFRDYLTENDIVSQLSTPGTPQQNR 1262
            E+FEKFK ++ EV+  L K+IK+ RSDRGGE+LS EF ++L +  IV QL+ P TPQ N 
Sbjct: 627  ESFEKFKEFQNEVQNQLGKTIKSLRSDRGGEFLSQEFGNHLKQCGIVPQLTPPSTPQWNG 686

Query: 1261 VSERRNRTLLDMVRSMMSFSNSTYLILWDILEAPGDTNSIVL*IGRPFVITNTTFLEDKY 1082
            VSER NRTLLDMVR MMS S+         LE    T                       
Sbjct: 687  VSERCNRTLLDMVRLMMSQSDLPLYFWGYALETAAFT----------------------- 723

Query: 1081 NNKCQSKSMVVLE*MSGSDSTTLIPKT*PSDRQPMVSQTPRERYLSGRNDSLFNPIDQEN 902
             N+  SKS                           V +TP E + +G++ SL    D++N
Sbjct: 724  LNRVPSKS---------------------------VDKTPYEIW-TGKSPSLSFLKDEQN 755

Query: 901  VQGNDEVFVSPERDTNIDENVTIPNEATVQDPPPLRQSQRVIRKPSRYLFVGESKQAISV 722
            +       V P                 V +    R+S+R  + P RY         I +
Sbjct: 756  I-------VEP-----------------VDEASAPRRSKRPCQMPIRY------AHDILL 785

Query: 721  KQVDDPISYKEAINDVDADLWKLAMNTEMESMHSNQVWELVDAPKGIKSIGCKWVYKKK 545
               D+P +YKEA+ D D++ W  AM +E++SM  NQVW LVD   G+K+I CKW+YKKK
Sbjct: 786  LNNDEPNTYKEAMMDPDSEKWLGAMKSEIDSMRDNQVWNLVDPLDGVKTIECKWIYKKK 844



 Score =  231 bits (588), Expect(2) = e-146
 Identities = 114/179 (63%), Positives = 138/179 (77%)
 Frame = -2

Query: 552  KKKRGVDGKVETFKARLVAKGFT*REGIDCDETFSPVAMLKSIRILLSIAAHYDYEVWQM 373
            KKK  +DG V   KARLVAKGF   +G+D DETFS VAMLKSIRI+L+IAA++DYE+WQM
Sbjct: 842  KKKIDMDGNVHIHKARLVAKGFRQVQGVDYDETFSLVAMLKSIRIILAIAAYFDYEIWQM 901

Query: 372  DVKTAFLNGHLEECIYMVQPDGFVERGHESKVCKLQRSIYGLKQASRSWNKRFDEVIKTY 193
            DVKTAFLNG L E +YM QP+GFV+  + SKVCKLQ+SIYGLKQASRSWN RFDE IK +
Sbjct: 902  DVKTAFLNGKLSEDVYMTQPEGFVDPNNASKVCKLQKSIYGLKQASRSWNIRFDEEIKRF 961

Query: 192  DFDQNFDEPCFYKKIQDRKVIFLVLYVDDILLIGNDVGMLSSTKAWLAQQFSYESFGQS 16
             F +N +EPC Y K+    ++ L+LYVDDILLIGND+ ML S KA L   FS +  G++
Sbjct: 962  GFVKNKEEPCVYMKVSGSTLVILILYVDDILLIGNDIPMLESVKASLKNSFSMKDLGEA 1020



 Score =  148 bits (373), Expect = 5e-32
 Identities = 79/256 (30%), Positives = 133/256 (51%), Gaps = 5/256 (1%)
 Frame = -2

Query: 2943 ILKQNQLTGENYVDWKRNLMIVLTVEKIDFVLEEDWPEQPTETTSKDMRDSYDRWVAADK 2764
            ILK+ +L G N+ DW RNL IVL  +K + VLEE  P+ P +  +  ++ +Y +      
Sbjct: 101  ILKKEKLNGTNFADWSRNLRIVLRQDKKEHVLEEPIPDVPADNAAATLKSAYKKACDESL 160

Query: 2763 LARCYILASMSNVLQQKHDGLETSYDIMKSLKNMFAHQSRRARFEVIRTLQNIRMKPGTP 2584
               C +LA+M++ LQ++ + +E +YD++ +LK MF  Q+R  RFE+ + L + ++  G+P
Sbjct: 161  DVSCLMLAAMNSDLQKQFENIE-AYDMIVALKGMFETQARTKRFEISKNLFSCKLAEGSP 219

Query: 2583 VKDHMLIMIGHFNVAENLGATIDQDTQVDMVLNSLPDMFSQFTVDYHLHKMDMPLTELMN 2404
            V  HM+ M+G+    E LG  + Q+   D++L SLP  + QF +++H++ +D  LTEL  
Sbjct: 220  VSPHMIKMVGYTQSLEKLGFPLSQELATDLILASLPASYGQFILNFHMNGLDKNLTELHM 279

Query: 2403 ELQNVESGLKSKGGDAY-----AAIXXXXXXXXXXXXXXXXXRANKKQESNKTNADGKPK 2239
             L+  E  +K             +                       +   KT +    +
Sbjct: 280  LLKTAEDSIKKINSHVMMVQKSTSFKKKARTWVKGKGKKVLDGIQTNKPKLKTKSGPTQE 339

Query: 2238 GKCFSCGEKGHWKKDC 2191
             +CF C E GHWK++C
Sbjct: 340  NECFYCKEPGHWKRNC 355


>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1161

 Score =  313 bits (801), Expect(2) = e-144
 Identities = 187/470 (39%), Positives = 258/470 (54%), Gaps = 38/470 (8%)
 Frame = -1

Query: 1843 LMNGLYILNYSTNEINNTSANHNKQNTYHTGDTYLWHLRLGHINLNRIQRLTKDGPLNSI 1664
            +MNGLYI+N     + N +A   + N  +   T++WH  LGHIN  RI++L +DG L+S 
Sbjct: 285  MMNGLYIVNLDGCSVYNINAKRQRPNNLNP--TFIWHCCLGHINEKRIEKLHRDGLLHSF 342

Query: 1663 EVEPLQVCDSCLEGKMTKRSFLAKGHRAKEVLELVHSDVCGPMNIPARGGYEYFITFTDD 1484
            + E  + C+SCL GKMTK  F  +  RA E+L LVH+DVCGPM+  ARGG+ YFITFTD+
Sbjct: 343  DFESFKTCESCLLGKMTKAPFTGQSERASELLGLVHTDVCGPMSSTARGGFGYFITFTDE 402

Query: 1483 YSRFGYIYLMTRKSEAFEKFKAYRTEVEKHLSKSIKTFRSDRGGEYLSGEFRDYLTENDI 1304
            +SR+GY+YLM  KSE+FEKF+ ++ EV+ HL K+IK  RSDRGGEYLS E+ ++L E  I
Sbjct: 403  FSRYGYVYLMRHKSESFEKFQEFQNEVQNHLGKTIKYLRSDRGGEYLSLEYGNHLKECGI 462

Query: 1303 VSQLSTPGTPQQNRVSERRNRTLLDMVRSMMSFSNSTYLILWDILEAPGDTNSIV----- 1139
            V QL+ PGTPQ N VSERRNR LLDMVRSMMS ++         LE    T + V     
Sbjct: 463  VPQLTPPGTPQWNAVSERRNRILLDMVRSMMSQTDMPLSFWGYALETAAFTLNRVPSKSV 522

Query: 1138 -----------------L*I----------------GRPFVITNTTFLEDKYNNKCQSKS 1058
                             L I                G+ FV  +  FLE ++ ++  S S
Sbjct: 523  DKTPYEIWTGKRPSLSFLKIWCCEETKGYYFYNREEGKVFVARHGVFLEKEFISRKDSGS 582

Query: 1057 MVVLE*MSGSDSTTLIPKT*PSDRQPMVSQTPRERYLSGRNDSLFNPIDQENVQGNDEVF 878
            MV                     R   + +TP     S +       ++Q+ VQ  ++V 
Sbjct: 583  MV---------------------RLKEIQETPENASTSTQPQ-----VEQDVVQQVEQVV 616

Query: 877  VSPERDTNIDENVTIPNEATVQDPPPLRQSQRVIRKPSRYLFVGESKQAISVKQVDDPIS 698
            V P                 V + P  R+S+R+ R P+RY  +   ++ I +   D+P +
Sbjct: 617  VEP-----------------VVEAPASRRSERIRRTPARYALLTSGQRDILLLDNDEPTT 659

Query: 697  YKEAINDVDADLWKLAMNTEMESMHSNQVWELVDAPKGIKSIGCKWVYKK 548
            Y+EA+   D + W  AM +E+ESMH NQVW LVD P G+K+I CKW++KK
Sbjct: 660  YEEAMVGPDTEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWIFKK 709



 Score =  231 bits (588), Expect(2) = e-144
 Identities = 113/179 (63%), Positives = 137/179 (76%)
 Frame = -2

Query: 552  KKKRGVDGKVETFKARLVAKGFT*REGIDCDETFSPVAMLKSIRILLSIAAHYDYEVWQM 373
            KK   VDG V  + ARLVAKGF   +G+D DETFSPVAMLKSIRI+L+IAA++DYE+WQM
Sbjct: 708  KKMTDVDGTVHIYNARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQM 767

Query: 372  DVKTAFLNGHLEECIYMVQPDGFVERGHESKVCKLQRSIYGLKQASRSWNKRFDEVIKTY 193
            DVKTAFLNG+L+E +YM QP GFV+     K+CKLQ+SIY LKQASRSWN RFDEV+K  
Sbjct: 768  DVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYRLKQASRSWNIRFDEVVKAL 827

Query: 192  DFDQNFDEPCFYKKIQDRKVIFLVLYVDDILLIGNDVGMLSSTKAWLAQQFSYESFGQS 16
             F +N +EPC YKKI    ++FL+LYVDDILLIGND+ ML S K  L   FS +  G++
Sbjct: 828  GFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKYSFSMKDLGEA 886



 Score =  111 bits (277), Expect = 6e-21
 Identities = 61/190 (32%), Positives = 105/190 (55%)
 Frame = -2

Query: 2943 ILKQNQLTGENYVDWKRNLMIVLTVEKIDFVLEEDWPEQPTETTSKDMRDSYDRWVAADK 2764
            IL++ +LTG N++DW RNL IVL  E  +FVL E +P           R  +++      
Sbjct: 14   ILEKEKLTGTNFMDWYRNLRIVLRQEHKEFVLTEPFPANLPNNAPAAQRREHEKRCNDYL 73

Query: 2763 LARCYILASMSNVLQQKHDGLETSYDIMKSLKNMFAHQSRRARFEVIRTLQNIRMKPGTP 2584
               C +LA+MS  LQ++++ L+ ++ I+  L+NMF  Q+R  RF   ++L   R+  G  
Sbjct: 74   DISCLMLATMSPELQRQYEALD-AHTIITGLRNMFEDQARAERFNTSKSLFACRLAEGNL 132

Query: 2583 VKDHMLIMIGHFNVAENLGATIDQDTQVDMVLNSLPDMFSQFTVDYHLHKMDMPLTELMN 2404
            V  H++ MIG+    + LG  + ++   D++L SLP  F  F ++++++ ++  L EL  
Sbjct: 133  VSPHVIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTLAELHG 192

Query: 2403 ELQNVESGLK 2374
             L+  E  +K
Sbjct: 193  MLKTAEESIK 202


>emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]
          Length = 923

 Score =  320 bits (821), Expect(2) = e-143
 Identities = 193/522 (36%), Positives = 269/522 (51%)
 Frame = -1

Query: 2110 LQESRKLNEGQFTITXXXXXXXXXXXXXXVYSYFSSSRRLIFKDCYYVPQMKRNLISISC 1931
            L+ SR L  G+  I               +     S   L   +CY +P + +N+IS SC
Sbjct: 278  LKRSRSLARGEVDIRVGNGARVAVVAVGTMSLSLPSGLVLELNNCYCIPALCKNVISASC 337

Query: 1930 LIGQGYSLDFAPNKALYILMNKAPICAGYLMNGLYILNYSTNEINNTSANHNKQNTYHTG 1751
            L  +GY      N    +  N        +MNGLYI+N     + N +A   + N  +  
Sbjct: 338  LQAEGYGFRSVDN-GCSVYYNDIFYFNAPMMNGLYIVNLDGCSVYNINAKRQRPNDLNP- 395

Query: 1750 DTYLWHLRLGHINLNRIQRLTKDGPLNSIEVEPLQVCDSCLEGKMTKRSFLAKGHRAKEV 1571
             T++WH R GHIN   +++L +DG L+S   E  + C+SCL GKMTK  F  +  RA E+
Sbjct: 396  -TFIWHCRFGHINEKCMEKLNRDGLLHSFGFESFETCESCLLGKMTKAPFTGQSERASEL 454

Query: 1570 LELVHSDVCGPMNIPARGGYEYFITFTDDYSRFGYIYLMTRKSEAFEKFKAYRTEVEKHL 1391
            L LVH+D+CGPM+  A+GG+ YFITFTDD+SR+GY+YLM  KSE+FEKFK ++ EV+ HL
Sbjct: 455  LGLVHTDICGPMSSTAKGGFGYFITFTDDFSRYGYVYLMRHKSESFEKFKKFQNEVQNHL 514

Query: 1390 SKSIKTFRSDRGGEYLSGEFRDYLTENDIVSQLSTPGTPQQNRVSERRNRTLLDMVRSMM 1211
             K+ K  RSD GGEYLS EF ++L +  I  Q + PGTPQ N VSERRNRTLLDM     
Sbjct: 515  GKTTKYLRSDCGGEYLSLEFGNHLKKCGIAPQFTPPGTPQWNGVSERRNRTLLDMETKGY 574

Query: 1210 SFSNSTYLILWDILEAPGDTNSIVL*IGRPFVITNTTFLEDKYNNKCQSKSMVVLE*MSG 1031
             F                         G+ FV+ +  FLE ++ ++  S SMV LE    
Sbjct: 575  YFYQEE---------------------GKVFVVRHGVFLEKEFISRKDSGSMVRLE---- 609

Query: 1030 SDSTTLIPKT*PSDRQPMVSQTPRERYLSGRNDSLFNPIDQENVQGNDEVFVSPERDTNI 851
                              + +TP    +S +       + QE      +V V P      
Sbjct: 610  -----------------EIQETPENASMSTQPQQAEQDVVQE------QVVVEP------ 640

Query: 850  DENVTIPNEATVQDPPPLRQSQRVIRKPSRYLFVGESKQAISVKQVDDPISYKEAINDVD 671
                       V + P  R+S+R  R P+RY  +   ++ I +   D+P +Y+E +   D
Sbjct: 641  -----------VVEAPSSRRSERTRRTPARYALLTIRQRDILLLDNDEPTTYEETMVGPD 689

Query: 670  ADLWKLAMNTEMESMHSNQVWELVDAPKGIKSIGCKWVYKKK 545
            ++ W  AM +E+ESMH NQVW LVD P G+K+I CKWV+KKK
Sbjct: 690  SEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWVFKKK 731



 Score =  221 bits (562), Expect(2) = e-143
 Identities = 104/162 (64%), Positives = 131/162 (80%)
 Frame = -2

Query: 552  KKKRGVDGKVETFKARLVAKGFT*REGIDCDETFSPVAMLKSIRILLSIAAHYDYEVWQM 373
            KKK  +DG V  +KA+LVAKGF   +G+D DETFSP+AMLKSIRI+L+IAA++DYE+WQM
Sbjct: 729  KKKIDIDGNVHMYKAQLVAKGFRQIQGVDYDETFSPIAMLKSIRIVLAIAAYFDYEIWQM 788

Query: 372  DVKTAFLNGHLEECIYMVQPDGFVERGHESKVCKLQRSIYGLKQASRSWNKRFDEVIKTY 193
            DVK AFLNG+L+E +YM QP GFV+     K+CKLQ+SIYGLKQASRSWN RFDE++K  
Sbjct: 789  DVKIAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEIVKAL 848

Query: 192  DFDQNFDEPCFYKKIQDRKVIFLVLYVDDILLIGNDVGMLSS 67
             F +N ++PC YKKI    ++FL+LYV+DILLIGND+ ML S
Sbjct: 849  GFVKNEEDPCVYKKISGSALVFLILYVNDILLIGNDIPMLES 890



 Score = 75.1 bits (183), Expect = 5e-10
 Identities = 61/254 (24%), Positives = 101/254 (39%), Gaps = 3/254 (1%)
 Frame = -2

Query: 2943 ILKQNQLTGENYVDWKRNLMIVLTVEKIDFVLEEDWPEQPTETTSKDMRDSYDRWVAADK 2764
            IL++ +LTG N++DW  NL IVL  E  +FVL + +P           R  + +      
Sbjct: 14   ILEKEKLTGTNFMDWYGNLRIVLRQEHKEFVLTQPFPADLPNNAPAAQRREHKKQCNDYL 73

Query: 2763 LARCYILASMSNVLQQKHDGLETSYDIMKSLKNMFAHQSRRARFEVIRTLQNIRMKPGTP 2584
               C +LA+MS  LQ++++ L+ ++ I+  L+NMF  Q+R  RF   ++L   R+    P
Sbjct: 74   DISCLMLATMSPELQRQYEALD-AHTIITGLRNMFEDQARAERFNTSKSLFACRLAEVNP 132

Query: 2583 VKDHMLIMIGHFNVAENLGATIDQDTQVDMVLNSLPDMFSQFTVDYHLHKMDMPLTELMN 2404
                                             SLP  F  F +++++  ++  L EL  
Sbjct: 133  ---------------------------------SLPPSFEPFIMNFNMKNLNRTLIELHG 159

Query: 2403 ELQNVESGLKSKGGDAYAAIXXXXXXXXXXXXXXXXXRANKKQESNKTNADGKPKGKCFS 2224
             L+  E  +K                              +K  S++  +    K K   
Sbjct: 160  MLKTAEESIKKNSNHVMVM--------HKRKPNNKKSGQKRKLNSDEITSTRNSKTKVQK 211

Query: 2223 CG---EKGHWKKDC 2191
             G   E GHWK++C
Sbjct: 212  TGPAKETGHWKRNC 225


>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1745

 Score =  315 bits (807), Expect(2) = e-135
 Identities = 197/497 (39%), Positives = 273/497 (54%), Gaps = 27/497 (5%)
 Frame = -1

Query: 1954 RNLISISCLIGQGYSLDFAPNKALYILMNKAPICAGYLMNGLYILNYSTNEINNTSANHN 1775
            +N+IS SCL  +GY      N    +  N        +M+GLYI+N     I N +A   
Sbjct: 847  KNVISASCLQAEGYGFRSVDN-GCSVYYNDIFYFHAPMMSGLYIVNLDGCSIYNINAKRQ 905

Query: 1774 KQNTYHTGDTYLWHLRLGHINLNRIQRLTKDGPLNSIEVEPLQVCDSCLEGKMTKRSFLA 1595
              N  +   T++WH RLGHIN  R+++L +DG L+S++ E  + C+SCL GKMTK  F  
Sbjct: 906  GPNDLNP--TFIWHCRLGHINEKRMEKLHRDGLLHSLDFESFETCESCLLGKMTKAPFTG 963

Query: 1594 KGHRAKEVLELVHSDVCGPMNIPARGGYEYFITFTDDYSRFGYIYLMTRKSEAFEKFKAY 1415
            +  R  E+L LVH+DVCGPM+  AR G+ YFITFTDD+SR+GY+YLM  KSE+FEKFK +
Sbjct: 964  QSERTSELLVLVHTDVCGPMSSTARCGFGYFITFTDDFSRYGYVYLMRHKSESFEKFKEF 1023

Query: 1414 RTEVEKHLSKSIKTFRSDRGGEYLSGEFRDYLTENDIVSQLSTPGTPQQNRVSERRNRTL 1235
            + EV+ HL K+IK  RSD GGEYLS EF ++L    IV QL+ PGTPQ N VSERRNRTL
Sbjct: 1024 QNEVQNHLRKTIKYLRSDHGGEYLSLEFGNHLKGCGIVPQLTPPGTPQWNGVSERRNRTL 1083

Query: 1234 LDMVRSMMSFSNSTYLILWDILEAPGDTNSIVL*IGRPFVITNTTFLEDKYNNKCQSKSM 1055
            L+MVRSMMS +N         LE    T + V     P    + T  E  +  K  S S 
Sbjct: 1084 LNMVRSMMSQTNLLLSFWGYALETAAFTLNRV-----PSKSVDKTPYE-IWTGKRPSLSF 1137

Query: 1054 VVLE*MSGSDSTTLIPKT*PSDRQPMVSQTPRER---YLSGRND--------------SL 926
            + +             K  P   +      P+E    YL  R +                
Sbjct: 1138 LKIWGCEVYVKRLQSDKLTPKSNKCFFVGYPKETKGYYLYNREEGKVFVARHGVFLKKEF 1197

Query: 925  FNPIDQENVQGNDEVFVSPE------RDTNIDENVTIPNEATVQDP----PPLRQSQRVI 776
             +  D  ++   +E+  +PE      +    +++V    E  V +P    P  R+S+R+ 
Sbjct: 1198 ISRKDSGSIVRLEEIQETPENASTSTQPQQAEQDVVQQVEQVVVEPVVEAPASRRSERIR 1257

Query: 775  RKPSRYLFVGESKQAISVKQVDDPISYKEAINDVDADLWKLAMNTEMESMHSNQVWELVD 596
            R P+RY  +   ++ I +   D+P +Y+EA+   D++ W  AM +E+ESMH NQVW LVD
Sbjct: 1258 RTPARYALLTIGQRDILLLDNDEPTTYEEAMVGPDSEKWPGAMKSEIESMHVNQVWNLVD 1317

Query: 595  APKGIKSIGCKWVYKKK 545
             P G+K+I CKWV+KKK
Sbjct: 1318 PPDGVKAIECKWVFKKK 1334



 Score =  198 bits (504), Expect(2) = e-135
 Identities = 103/179 (57%), Positives = 125/179 (69%)
 Frame = -2

Query: 552  KKKRGVDGKVETFKARLVAKGFT*REGIDCDETFSPVAMLKSIRILLSIAAHYDYEVWQM 373
            KKK  VDG V  +KARLVAKGF   +G+D DETFSPVAMLKSI+I+L+IAA++DYE+WQM
Sbjct: 1332 KKKTYVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKSIQIVLAIAAYFDYEIWQM 1391

Query: 372  DVKTAFLNGHLEECIYMVQPDGFVERGHESKVCKLQRSIYGLKQASRSWNKRFDEVIKTY 193
            DVKTAFLNG+L+E                       +SIYGLKQASRSWN RFDEV+K  
Sbjct: 1392 DVKTAFLNGNLDE----------------------DKSIYGLKQASRSWNIRFDEVVKAL 1429

Query: 192  DFDQNFDEPCFYKKIQDRKVIFLVLYVDDILLIGNDVGMLSSTKAWLAQQFSYESFGQS 16
             F +N +EPC YKKI    ++FL+LYVDDILLIGND+ ML S K  L   FS +  G++
Sbjct: 1430 GFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEA 1488


>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
          Length = 1544

 Score =  392 bits (1008), Expect = e-105
 Identities = 240/572 (41%), Positives = 331/572 (57%), Gaps = 53/572 (9%)
 Frame = -1

Query: 2107 QESRKLNEGQFTITXXXXXXXXXXXXXXVYSYFSSSRRLIFKDCYYVPQMKRNLISISCL 1928
            QE+R+L++G+  I               +   F ++R L  K+  YVP ++RNLI IS L
Sbjct: 631  QETRQLSKGEVNIFLGNGSEVAVLAVGNIALNFKNNRTLFLKNVLYVPSIRRNLIPISSL 690

Query: 1927 IGQGYSLDFAP--NKALYILMNKAPICAGYLMNGLYILNYS------TNEINNTS--ANH 1778
               GYS+ F    + ++ I   +  IC+G L++ LYIL  +       +E+NN    A  
Sbjct: 691  SKNGYSVCFNEFYDDSVVIKFREQMICSGSLIDSLYILKVTPELQLTNSEVNNFDIVAPL 750

Query: 1777 NKQNTYHTGDTYLWHLRLGHINLNRIQRLTKDGPLNSIEVEPLQVCDSCLEGKMTKRSFL 1598
             ++       TYLWHLRLGHINL+RI  L KDGPL+S++VE L  C+SCLEGKMTKR F 
Sbjct: 751  KRKRPIELSYTYLWHLRLGHINLDRISLLVKDGPLSSLKVEALPTCESCLEGKMTKRPFP 810

Query: 1597 AKGHRAKEVLELVHSDVCGPMNIPARGGYEYFITFTDDYSRFGYIYLMTRKSEAFEKFKA 1418
             KG+RA +VLEL+HSD+CGPM++ ARGG+EYF+TFTDDYSR+GYIYL+ RKSE FEKFKA
Sbjct: 811  LKGNRANDVLELIHSDLCGPMSVQARGGFEYFVTFTDDYSRYGYIYLLCRKSECFEKFKA 870

Query: 1417 YRTEVEKHLSKSIKTFRSDRGGEYLSGEFRDYLTENDIVSQLSTPGTPQQNRVSERRNRT 1238
            ++ E+E+   K IKT RSD GGEY+S EF  +L+E  I SQLS PG PQQN V+ERRNRT
Sbjct: 871  FKAEMEQRHGKYIKTLRSDHGGEYISREFITFLSEQGITSQLSAPGMPQQNGVAERRNRT 930

Query: 1237 LLDMVRSMMSFSNSTYLILWDILEAPGDTNSIV-----------L*IGRP---------- 1121
            L++MVRSMMS+S+    +    +E      ++V           L  GR           
Sbjct: 931  LMEMVRSMMSYSDLPISLWGHAIETAAYILNLVPSKSVPKTPTELWTGRGLFYSPKYKKI 990

Query: 1120 FVITNTTFLEDKYNNKCQSKSMVVLE*MSGSDSTTLIPKT*PSDRQP---MVSQTPRERY 950
             V TN  +LE+ Y      KS + L  + G    T+  +  PS+ +P   MV        
Sbjct: 991  IVSTNAHYLEENYIRNHIPKSQLALNELRGD---TIPARIFPSEHEPEPFMVGADIPLPQ 1047

Query: 949  LSGRNDS--------LFNPI-DQENVQGNDEV----FVSPERDTNIDENVTIP------N 827
             SGRN S        +  P+ D+ENV+    V    ++   +D  +   + +P      +
Sbjct: 1048 RSGRNVSGPKFETSDISLPVGDEENVEAPVHVPFEEYIDEVQDV-VPPVINLPALQPQQD 1106

Query: 826  EATVQDPPPLRQSQRVIRKPSRYLFVGESKQAISVKQVDDPISYKEAINDVDADLWKLAM 647
            E   + P  LR+S R  R P +Y  +GE+   I  +   +P+ Y +A+ D DAD W +AM
Sbjct: 1107 EGVAEQPVVLRRSGRTRRPPVQYTLLGEAFDRIPEEVNTEPVCYDDALQDKDADKWLVAM 1166

Query: 646  NTEMESMHSNQVWELVDAPKGIKSIGCKWVYK 551
             +EMESM+SNQVWELV+ PKG+K IG  + Y+
Sbjct: 1167 KSEMESMYSNQVWELVEPPKGVKPIGSYFDYE 1198



 Score =  212 bits (540), Expect = 2e-51
 Identities = 110/260 (42%), Positives = 157/260 (60%), Gaps = 1/260 (0%)
 Frame = -2

Query: 2964 SLSPFSVILKQNQLTGENYVDWKRNLMIVLTVEKIDFVLEEDWPEQPTETTSKDMRDSYD 2785
            S +P + IL Q +L G NYVDWKRNL I+LT E+  FVL E   E+P E  ++D   ++ 
Sbjct: 324  SFNPLANILTQXKLEGPNYVDWKRNLDILLTAEEYKFVLSEVCLEKPGEGATQDQIKAHQ 383

Query: 2784 RWVAADKLARCYILASMSNVLQQKHDGLETSYDIMKSLKNMFAHQSRRARFEVIRTLQNI 2605
            +WV AD++ARCYILASMSNVLQ +H  ++T+YDI+++LK MF  Q+  AR   +R +   
Sbjct: 384  KWVKADEMARCYILASMSNVLQHQHQKMDTAYDILENLKEMFGDQTSAARQNTLREILTS 443

Query: 2604 RMKPGTPVKDHMLIMIGHFNVAENLGATIDQDTQVDMVLNSLPDMFSQFTVDYHLHKMDM 2425
            +M+ GT V+ H+L M+   N  E LGA +D+ TQ++MVLN+LP  F QF ++Y+++KMD 
Sbjct: 444  KMEEGTQVRTHVLKMMSLLNDMEVLGAEVDKATQIEMVLNTLPPSFQQFRLNYNMNKMDF 503

Query: 2424 PLTELMNELQNVESGLKSKGGDAYAAIXXXXXXXXXXXXXXXXXRANKKQESNKTN-ADG 2248
             L++L+NEL   ++ +K         I                 + N    +N  N    
Sbjct: 504  TLSKLLNELVAAQTIIKQGAAPVVLNIERVFSSVQKKGKKKKNVKPNNNGAANGVNGVVK 563

Query: 2247 KPKGKCFSCGEKGHWKKDCP 2188
            KPKGKCF C +  HWK  CP
Sbjct: 564  KPKGKCFHCKQPSHWKLQCP 583



 Score =  137 bits (344), Expect = 1e-28
 Identities = 61/95 (64%), Positives = 73/95 (76%)
 Frame = -2

Query: 408  IAAHYDYEVWQMDVKTAFLNGHLEECIYMVQPDGFVERGHESKVCKLQRSIYGLKQASRS 229
            I +++DYE+WQMDVK AFLNG L+ECIYM QP+GF+  G E  +CKL RSIYGLKQ SRS
Sbjct: 1191 IGSYFDYEIWQMDVKIAFLNGSLDECIYMKQPEGFITNGQEHLLCKLNRSIYGLKQTSRS 1250

Query: 228  WNKRFDEVIKTYDFDQNFDEPCFYKKIQDRKVIFL 124
            WN  FD+ IKT+ FDQ  DE C YKK   +KV+FL
Sbjct: 1251 WNTCFDQTIKTFGFDQCHDESCVYKKWNGKKVVFL 1285


>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
          Length = 1292

 Score =  385 bits (989), Expect = e-103
 Identities = 237/565 (41%), Positives = 317/565 (56%), Gaps = 35/565 (6%)
 Frame = -1

Query: 2098 RKLNEGQFTITXXXXXXXXXXXXXXVYSYFSSSRRLIFKDCYYVPQMKRNLISISCLIGQ 1919
            +KL EG+ T+               +  +F   R LI KD  YVP MKRNLISI+C++  
Sbjct: 322  KKLKEGEITLKVGTGEVVSAEAVGDLTLFFQD-RYLILKDVLYVPLMKRNLISIACILEH 380

Query: 1918 GYSLDFAPNKALYILMNKAPICAGYLMNGLYILNYS------TNEINNTSANHNKQNTYH 1757
             Y++ F  N+ ++IL     IC+    N LY L  +        E+  T    NK+    
Sbjct: 381  IYTISFEVNE-VFILCKGIQICSAIRENNLYKLRPTRANVVLNTEMFRTLETQNKKQKV- 438

Query: 1756 TGDTYLWHLRLGHINLNRIQRLTKDGPLNSIEVEPLQVCDSCLEGKMTKRSFLAKGHRAK 1577
            + + YLWHLRLGHINLNRI+RL K G LN +E   L  C+SCLEGKMTKRSF  KG RAK
Sbjct: 439  SSNAYLWHLRLGHINLNRIERLVKSGILNQLEDNSLPPCESCLEGKMTKRSFTGKGLRAK 498

Query: 1576 EVLELVHSDVCGPMNIPARGGYEYFITFTDDYSRFGYIYLMTRKSEAFEKFKAYRTEVEK 1397
              LELVHSD+CGPMN+ ARGGYEYFI+F DD+SR+G++YL+  KSE+FEKFK Y+ EVE 
Sbjct: 499  VPLELVHSDLCGPMNVKARGGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVEN 558

Query: 1396 HLSKSIKTFRSDRGGEYLSGEFRDYLTENDIVSQLSTPGTPQQNRVSERRNRTLLDMVRS 1217
             + K+IKT RSDRGGEY+  +F+DYL E  I SQLS P TPQQN VSERRNRTLLDMVRS
Sbjct: 559  EIGKTIKTLRSDRGGEYMDSKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRS 618

Query: 1216 MMSFSNSTYLILWDILEAPGDTNSIVL*IGRPFVITNTTFLEDKYNNKCQSKSMVVLE*M 1037
            MMS++          LE           I     + + + LE  Y      KS +    +
Sbjct: 619  MMSYAQLPDSFWGYALETA---------IHILNNVPSKSVLETPYELWKGRKSSLRYFRI 669

Query: 1036 SGSDSTTLI---PKT*PSDRQPMVSQTPRERYLSGRNDSLFNPIDQENVQGNDEVFVSPE 866
             G  +  L+    K  P  +  +    P+E     R    ++P + +     +  F+  +
Sbjct: 670  WGCPAHVLVQNPKKLEPRSKLCLFVGYPKE----SRGGLFYHPQENKVFVSTNATFLEED 725

Query: 865  RDTN-----------IDENVT--------IPNEATVQDPPPLRQ-------SQRVIRKPS 764
               N           + +N T        + ++A + D     Q       S RV+ +P+
Sbjct: 726  HXRNHQPRSKIVLKEMFKNATDKPSSSTKVVDKANISDQSHTSQELRVPRRSGRVVHQPN 785

Query: 763  RYLFVGESKQAISVKQVDDPISYKEAINDVDADLWKLAMNTEMESMHSNQVWELVDAPKG 584
            RYL + E++  I    V+DP++YK+A+NDVD D W  AMN EMESM+ N VW LVD P  
Sbjct: 786  RYLGLVETQIIIPDDGVEDPLTYKQAMNDVDRDQWIKAMNLEMESMYFNSVWTLVDLPSD 845

Query: 583  IKSIGCKWVYKKKERSRWEGGNLQS 509
            +K IGCKW+YK+K   R + G +Q+
Sbjct: 846  VKPIGCKWIYKRK---RDQAGKVQT 867



 Score =  259 bits (662), Expect = 1e-65
 Identities = 127/187 (67%), Positives = 148/187 (79%)
 Frame = -2

Query: 576  PSGASGSTKKKRGVDGKVETFKARLVAKGFT*REGIDCDETFSPVAMLKSIRILLSIAAH 397
            P G     K+KR   GKV+TFKARLVAKG+T +EG+D +ETFSPVAMLKSIRILLSIA  
Sbjct: 848  PIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEGVDYEETFSPVAMLKSIRILLSIATF 907

Query: 396  YDYEVWQMDVKTAFLNGHLEECIYMVQPDGFVERGHESKVCKLQRSIYGLKQASRSWNKR 217
            Y+YE+WQMDVKTAFLNG+LEE IYMVQP+GF+ +  E KVCKLQ+SIYGLKQASRSWN R
Sbjct: 908  YNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKSIYGLKQASRSWNIR 967

Query: 216  FDEVIKTYDFDQNFDEPCFYKKIQDRKVIFLVLYVDDILLIGNDVGMLSSTKAWLAQQFS 37
            FD  IK+Y F+QN DEPC YKKI +  V FL+LYVDDILLIGNDV  L+  K WL  QF 
Sbjct: 968  FDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVEYLTDVKKWLNTQFQ 1027

Query: 36   YESFGQS 16
             +  G++
Sbjct: 1028 MKDLGEA 1034



 Score =  190 bits (483), Expect = 8e-45
 Identities = 104/264 (39%), Positives = 146/264 (55%), Gaps = 12/264 (4%)
 Frame = -2

Query: 2943 ILKQNQLTGENYVDWKRNLMIVLTVEKIDFVLEEDWPEQPTETTSKDMRDSYDRWVAADK 2764
            +L   +L G+NY  WK NL  +L V+ + FVL E+ P+ P    ++ +R++YDRWV A+ 
Sbjct: 8    LLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYDRWVKAND 67

Query: 2763 LARCYILASMSNVLQQKHDGLETSYDIMKSLKNMFAHQSRRARFEVIRTLQNIRMKPGTP 2584
             AR YILASM++VL +KHD + T+  IM SL+ MF   S   R E I+ +   RMK GT 
Sbjct: 68   KARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTKRMKEGTS 127

Query: 2583 VKDHMLIMIGHFNVAENLGATIDQDTQVDMVLNSLPDMFSQFTVDYHLHKMDMPLTELMN 2404
            V++H+L M+ HFN+AE  G  ID+  QV  +L SLP  F  F  +  L+K++  LT L+N
Sbjct: 128  VREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEFNLTTLLN 187

Query: 2403 ELQNVESGLKSKGGDAYAAIXXXXXXXXXXXXXXXXXRANKKQESN------------KT 2260
            ELQ  ++   SKG +  A +                   +K Q               K 
Sbjct: 188  ELQRFQNLTLSKGKEVEANVAVTKRKFIRGSSSKNKVGPSKAQMKKKGKGKAPNTSKVKK 247

Query: 2259 NADGKPKGKCFSCGEKGHWKKDCP 2188
            NAD   KGKCF C + GHWK++CP
Sbjct: 248  NAD---KGKCFHCNQDGHWKRNCP 268


>emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]
          Length = 1285

 Score =  326 bits (835), Expect = 1e-85
 Identities = 228/592 (38%), Positives = 308/592 (52%), Gaps = 71/592 (11%)
 Frame = -1

Query: 2107 QESRKLNEGQFTITXXXXXXXXXXXXXXVYSYFSSSRRLIFKDCYYVPQMKRNLISISCL 1928
            QE+R+L++G+  I               +   F ++R L  K+  YVP ++RNLIS+S L
Sbjct: 279  QETRQLSKGEVNIFLGDGTEVAVLAVGNIALNFKNNRILSLKNVLYVPSIRRNLISVSSL 338

Query: 1927 IGQGYSLDFAP--NKALYILMNKAPICAGYLMNGLYILNYS------TNEINNTS--ANH 1778
               GYS+ F    + ++ I   +  IC+G L++GLYIL  +       +E+NN    A  
Sbjct: 339  SKNGYSVCFNEFYDDSVVIKFREQIICSGSLIDGLYILKVTPELQLTNSEVNNFDIVAPL 398

Query: 1777 NKQNTYHTGDTYLWHLRLGHINLNRIQRLTKDGPLNSIEVEPLQVCDSCLEGKMTKRSFL 1598
             ++       TYLWHLRLGHINL+RI  L KDGPL+S++VE L  C+SCLEGKMT R F 
Sbjct: 399  KRKCPIELSYTYLWHLRLGHINLDRISLLVKDGPLSSLKVEALPTCESCLEGKMTNRPFP 458

Query: 1597 AKGHRAKEVLELVHSDVCGPMNIPARGGYEYFITFTDDYSRFGYIYLMTRKSEAFEKFKA 1418
             KG+RA +VLEL+HSD+CGPM++ ARGG+EYF+TFT DYSR+GYIYL+ RKSE FEKFKA
Sbjct: 459  LKGNRANDVLELIHSDLCGPMSVQARGGFEYFVTFTYDYSRYGYIYLLRRKSECFEKFKA 518

Query: 1417 YRTEVEKHLSKSIKTFRSDRGGEYLSGEFRDYLTENDIVSQLSTPGTPQQ--NRVSERRN 1244
            ++ E EK   K IKT RSD GGEY+S EF  +L+E  I SQLS P  P      V E   
Sbjct: 519  FKAETEKRHGKYIKTLRSDHGGEYISREFITFLSEQGITSQLSAPDLPISFWGHVIETA- 577

Query: 1243 RTLLDMVRSMMSFSNST-----------YLILW----DILEAPGD----TNSIVL*IGRP 1121
              +L++V S   F   T           ++ +W     +L+   D           IG P
Sbjct: 578  AYILNLVPSKSVFKTPTELWTGRKPSLKHVRMWGCPTHVLKGKTDKLETKIEFCFFIGYP 637

Query: 1120 ----------------FVITNTTFLEDKYNNKCQSKSMVVLE*MSGSDSTTLIPKT*PSD 989
                             V TN  +LE+ Y      KS + L  + G    T+  +  PS+
Sbjct: 638  RGTKGSLFYSPKDKKIIVSTNAHYLEEDYIRNHIPKSQLALNELRGD---TIPARIFPSE 694

Query: 988  RQP---MVSQTPRERYLSGRNDS--------LFNPI-DQENVQGNDEVFVSPERDTNIDE 845
             +P   MV         SGRN S        +  P+ D+ENV+    + V  E   +  +
Sbjct: 695  HEPEPFMVRADIPLPQRSGRNVSGPEFETFDISLPVGDEENVEA--PIHVPFEEHIDEVQ 752

Query: 844  NVTIP-----------NEATVQDPPPLRQSQRVIRKPSRYLFVGESKQAISVKQVDDPIS 698
            +V  P           +E   + P  LR+S R  R P RY  +GE+   I  +       
Sbjct: 753  DVVPPVINLPALQPQQDEGVAEQPVVLRRSGRTRRPPVRYTLLGEAFDRIPEE------- 805

Query: 697  YKEAINDVDADLWKLAMNTE-MESMHSNQVWELVDAPKGIKSIGCKWVYKKK 545
                            +NTE MESM+SNQVWELV+ PKG+K IGCKW+YKKK
Sbjct: 806  ----------------VNTEPMESMYSNQVWELVEPPKGVKPIGCKWIYKKK 841



 Score =  218 bits (555), Expect = 4e-53
 Identities = 106/155 (68%), Positives = 124/155 (80%)
 Frame = -2

Query: 588  KG*NPSGASGSTKKKRGVDGKVETFKARLVAKGFT*REGIDCDETFSPVAMLKSIRILLS 409
            KG  P G     KKKRG+DGKV+T+KA+LVAKG+T +EGID +ETFSPVAMLKSIRILLS
Sbjct: 827  KGVKPIGCKWIYKKKRGIDGKVQTYKAKLVAKGYTQKEGIDYEETFSPVAMLKSIRILLS 886

Query: 408  IAAHYDYEVWQMDVKTAFLNGHLEECIYMVQPDGFVERGHESKVCKLQRSIYGLKQASRS 229
            IAA++DYE+WQMDVKTAFLNG L+ECIYM Q +GF+  G E  +CKL RSIYGLKQASRS
Sbjct: 887  IAAYFDYEIWQMDVKTAFLNGSLDECIYMKQLEGFITNGQEHLLCKLNRSIYGLKQASRS 946

Query: 228  WNKRFDEVIKTYDFDQNFDEPCFYKKIQDRKVIFL 124
            WN  FD+ IKT+ FDQ  D  C YKK   +KV+FL
Sbjct: 947  WNTCFDQTIKTFGFDQCHDVSCVYKKWNGKKVVFL 981



 Score =  170 bits (430), Expect = 1e-38
 Identities = 98/269 (36%), Positives = 146/269 (54%), Gaps = 10/269 (3%)
 Frame = -2

Query: 2964 SLSPFSVILKQNQLTGENYVDWKRNLMIVLTVEKIDFVLEEDWPEQPTETTSKDMRDSYD 2785
            S +P + IL QN+L G NYVDWKRNL I+ T E+  FVL E   E+P E  ++D   ++ 
Sbjct: 3    SFNPLANILTQNKLEGPNYVDWKRNLDILQTAEEYKFVLSEVCLEKPGEGATQDQIKAHQ 62

Query: 2784 RWVAADKLARCYILASMSNVLQQKHDGLETSYDIMKSLKNMFAHQSRRARFEVIRTLQNI 2605
            +WV AD++ARCYILASMSNVLQ +H  ++T+YDI+++LK MF  Q+   R   +R +   
Sbjct: 63   KWVKADEMARCYILASMSNVLQHQHQKMDTTYDILENLKEMFGDQTSAVRQNALREILTS 122

Query: 2604 RMKPGTPVKDHMLIMIGHFNVAENLGATIDQDTQVDMVLNSLPDMFSQFTVDYHLHKMDM 2425
            +M+ GT V+ H+L M+   N  E LGA +D+ TQ++M++       +  T+      +  
Sbjct: 123  KMEEGTQVRTHVLKMMSLLNDMEVLGAEVDKATQIEMLV-------AAETI------IKQ 169

Query: 2424 PLTELMNELQNVESGLKSKGGDAYAAIXXXXXXXXXXXXXXXXXRANKKQESNKTNADG- 2248
              T ++  ++   S ++ KG                           KK+++ K N +G 
Sbjct: 170  GATPVVLNIERASSSVQKKG---------------------------KKKKNVKLNNNGA 202

Query: 2247 ---------KPKGKCFSCGEKGHWKKDCP 2188
                     KPKGKCF C + GHWK  CP
Sbjct: 203  TNGVNGVVKKPKGKCFHCKQPGHWKLQCP 231


>gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 649

 Score =  174 bits (442), Expect(2) = 5e-81
 Identities = 90/179 (50%), Positives = 114/179 (63%)
 Frame = -2

Query: 552 KKKRGVDGKVETFKARLVAKGFT*REGIDCDETFSPVAMLKSIRILLSIAAHYDYEVWQM 373
           KKK  VDG V   KARLV                          I+L+IA +++Y++WQM
Sbjct: 249 KKKTDVDGNVHIHKARLV--------------------------IVLAIATYFNYKIWQM 282

Query: 372 DVKTAFLNGHLEECIYMVQPDGFVERGHESKVCKLQRSIYGLKQASRSWNKRFDEVIKTY 193
           DVKTAFLNG+L+E +YM QP GFV+     ++CKLQ+SIYGLKQASRSW   FDEV+K  
Sbjct: 283 DVKTAFLNGNLDEDVYMTQPKGFVDPQSAKRICKLQKSIYGLKQASRSWKICFDEVVKVL 342

Query: 192 DFDQNFDEPCFYKKIQDRKVIFLVLYVDDILLIGNDVGMLSSTKAWLAQQFSYESFGQS 16
            F +N +EPC YKKI    ++FL+LYVDDILLIGND+ ML S K  L   FS +  G++
Sbjct: 343 GFVKNEEEPCVYKKISGSTLVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEA 401



 Score =  158 bits (399), Expect(2) = 5e-81
 Identities = 115/334 (34%), Positives = 153/334 (45%), Gaps = 3/334 (0%)
 Frame = -1

Query: 1537 MNIPARGGYEYFITFTDDYSRFGYIYLMTRKSEAFEKFKAYRTEVEKHLSKSIKTFRSDR 1358
            M+  ARG + YFITFTDD+SR+GY+YLM  KSE+FEKFK ++ E                
Sbjct: 1    MSSTARGDFGYFITFTDDFSRYGYVYLMRHKSESFEKFKEFQNE---------------- 44

Query: 1357 GGEYLSGEFRDYLTENDIVSQLSTPGTPQQNRVSERRNRTLLDMVRSMMSFSNSTYLILW 1178
                          E  IV QL+  GTPQ N VSERRNRTLL MVRSMMS ++       
Sbjct: 45   --------------ECGIVPQLTPTGTPQWNGVSERRNRTLLYMVRSMMSQTDMPLSFWG 90

Query: 1177 DILEAPGDTNSIVL*IGRPFVITNTTFLEDKYNNKCQSKSMVVLE*MSGSDSTTLIPKT* 998
              LE    T                        N+  SKS                    
Sbjct: 91   YALETAAFTL-----------------------NRVPSKS-------------------- 107

Query: 997  PSDRQPMVSQTPRERYLSGRNDSLFNPI-DQENVQGNDEVFVSPERDTN--IDENVTIPN 827
                   V +TP E +   R    F  I   E    N      P++     + E V +  
Sbjct: 108  -------VDKTPYEIWTGKRPSLSFLKIWGCEETPENASTSTQPQQAEQDVVQEQVVVE- 159

Query: 826  EATVQDPPPLRQSQRVIRKPSRYLFVGESKQAISVKQVDDPISYKEAINDVDADLWKLAM 647
               V + P  R+S+R+ R P+RY  +   ++ I +   D+P +Y+EA+   D++ W  AM
Sbjct: 160  --PVVEAPASRRSERIRRTPARYALLTTGQRDILLLDNDEPTTYEEAMVGPDSEKWLEAM 217

Query: 646  NTEMESMHSNQVWELVDAPKGIKSIGCKWVYKKK 545
             +E+E MH NQVW LVD P G+K+I CKWV+KKK
Sbjct: 218  KSEIEFMHVNQVWNLVDPPDGVKAIECKWVFKKK 251


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
            19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
            putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  235 bits (599), Expect(2) = 4e-76
 Identities = 115/179 (64%), Positives = 136/179 (75%)
 Frame = -2

Query: 552  KKKRGVDGKVETFKARLVAKGFT*REGIDCDETFSPVAMLKSIRILLSIAAHYDYEVWQM 373
            KKK  +DG ++ +KA LVAKG+    GID DET+SPVAMLKSIRILL+ AAHYDYE+WQM
Sbjct: 493  KKKIDMDGNIQIYKAGLVAKGYKQVHGIDYDETYSPVAMLKSIRILLATAAHYDYEIWQM 552

Query: 372  DVKTAFLNGHLEECIYMVQPDGFVERGHESKVCKLQRSIYGLKQASRSWNKRFDEVIKTY 193
            DVKTAFLNG+LEE +YM QP+GF       KVCKL RSIYGLKQASRSWN RF+E IK +
Sbjct: 553  DVKTAFLNGNLEEHVYMTQPEGFTVPEAARKVCKLHRSIYGLKQASRSWNLRFNEAIKEF 612

Query: 192  DFDQNFDEPCFYKKIQDRKVIFLVLYVDDILLIGNDVGMLSSTKAWLAQQFSYESFGQS 16
            DF +N +EPC YKK     V FLVLYVDDILL+GND+ +L S K WL   FS +  G++
Sbjct: 613  DFIRNEEEPCVYKKTSGSAVAFLVLYVDDILLLGNDIPLLQSVKTWLGSCFSMKDMGEA 671



 Score = 81.6 bits (200), Expect(2) = 4e-76
 Identities = 38/87 (43%), Positives = 55/87 (63%)
 Frame = -1

Query: 805 PPLRQSQRVIRKPSRYLFVGESKQAISVKQVDDPISYKEAINDVDADLWKLAMNTEMESM 626
           P +R+S+R   +P R+        A+ + + D+P SY+EA+   D+D W  A  +EMESM
Sbjct: 409 PEVRRSERSRHEPDRFRDWVMDDHALFMIESDEPTSYEEALMGPDSDKWLEAAKSEMESM 468

Query: 625 HSNQVWELVDAPKGIKSIGCKWVYKKK 545
             N+VW LVD P G+K I CKW++KKK
Sbjct: 469 SQNKVWTLVDLPDGVKPIECKWIFKKK 495



 Score =  268 bits (686), Expect = 2e-68
 Identities = 141/265 (53%), Positives = 176/265 (66%)
 Frame = -1

Query: 1993 LIFKDCYYVPQMKRNLISISCLIGQGYSLDFAPNKALYILMNKAPICAGYLMNGLYILNY 1814
            L  K+CYYVP + +N+IS+SCL  +G+      NK      +     +  L NGL++LN 
Sbjct: 3    LELKNCYYVPAINKNIISVSCLDMEGFHFSIK-NKCCSFDRDDMFYGSAPLDNGLHVLNQ 61

Query: 1813 STNEINNTSANHNKQNTYHTGDTYLWHLRLGHINLNRIQRLTKDGPLNSIEVEPLQVCDS 1634
            S   I N      K N  +   T+LWH RLGHIN   IQ+L  DG LNS + E  + C+S
Sbjct: 62   SM-PIYNIRTKKFKSNDLNP--TFLWHCRLGHINEKHIQKLHSDGLLNSFDYESYETCES 118

Query: 1633 CLEGKMTKRSFLAKGHRAKEVLELVHSDVCGPMNIPARGGYEYFITFTDDYSRFGYIYLM 1454
            CL GKMTK  F     RA ++L L+H+DVCGPM+  ARG Y+YFITFTDD+SR+GY+YLM
Sbjct: 119  CLLGKMTKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYGYVYLM 178

Query: 1453 TRKSEAFEKFKAYRTEVEKHLSKSIKTFRSDRGGEYLSGEFRDYLTENDIVSQLSTPGTP 1274
              KS++FE FK ++ EV+    KSIK  RSDRGGEYLS  F D+L E  IVSQL+ PGTP
Sbjct: 179  KHKSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGTP 238

Query: 1273 QQNRVSERRNRTLLDMVRSMMSFSN 1199
            Q N VSERRNRTLLDMVRSMMS ++
Sbjct: 239  QWNGVSERRNRTLLDMVRSMMSHTD 263


>gb|AAK52163.1|AC084831_17 putative polyprotein [Oryza sativa Japonica Group]
          Length = 637

 Score =  158 bits (399), Expect(2) = 7e-76
 Identities = 115/334 (34%), Positives = 153/334 (45%), Gaps = 3/334 (0%)
 Frame = -1

Query: 1537 MNIPARGGYEYFITFTDDYSRFGYIYLMTRKSEAFEKFKAYRTEVEKHLSKSIKTFRSDR 1358
            M+  ARG + YFITFTDD+SR+GY+YLM  KSE+FEKFK ++ E                
Sbjct: 1    MSSTARGDFGYFITFTDDFSRYGYVYLMRHKSESFEKFKEFQNE---------------- 44

Query: 1357 GGEYLSGEFRDYLTENDIVSQLSTPGTPQQNRVSERRNRTLLDMVRSMMSFSNSTYLILW 1178
                          E  IV QL+  GTPQ N VSERRNRTLL MVRSMMS ++       
Sbjct: 45   --------------ECGIVPQLTPTGTPQWNGVSERRNRTLLYMVRSMMSQTDMPLSFWG 90

Query: 1177 DILEAPGDTNSIVL*IGRPFVITNTTFLEDKYNNKCQSKSMVVLE*MSGSDSTTLIPKT* 998
              LE    T                        N+  SKS                    
Sbjct: 91   YALETAAFTL-----------------------NRVPSKS-------------------- 107

Query: 997  PSDRQPMVSQTPRERYLSGRNDSLFNPI-DQENVQGNDEVFVSPERDTN--IDENVTIPN 827
                   V +TP E +   R    F  I   E    N      P++     + E V +  
Sbjct: 108  -------VDKTPYEIWTGKRPSLSFLKIWGCEETPENASTSTQPQQAEQDVVQEQVVVE- 159

Query: 826  EATVQDPPPLRQSQRVIRKPSRYLFVGESKQAISVKQVDDPISYKEAINDVDADLWKLAM 647
               V + P  R+S+R+ R P+RY  +   ++ I +   D+P +Y+EA+   D++ W  AM
Sbjct: 160  --PVVEAPASRRSERIRRTPARYALLTTGQRDILLLDNDEPTTYEEAMVGPDSEKWLEAM 217

Query: 646  NTEMESMHSNQVWELVDAPKGIKSIGCKWVYKKK 545
             +E+E MH NQVW LVD P G+K+I CKWV+KKK
Sbjct: 218  KSEIEFMHVNQVWNLVDPPDGVKAIECKWVFKKK 251



 Score =  157 bits (398), Expect(2) = 7e-76
 Identities = 85/179 (47%), Positives = 103/179 (57%)
 Frame = -2

Query: 552 KKKRGVDGKVETFKARLVAKGFT*REGIDCDETFSPVAMLKSIRILLSIAAHYDYEVWQM 373
           KKK  VDG V   KARLV                                      +WQM
Sbjct: 249 KKKTDVDGNVHIHKARLV--------------------------------------IWQM 270

Query: 372 DVKTAFLNGHLEECIYMVQPDGFVERGHESKVCKLQRSIYGLKQASRSWNKRFDEVIKTY 193
           DVKTAFLNG+L+E +YM QP GFV+     ++CKLQ+SIYGLKQASRSW   FDEV+K  
Sbjct: 271 DVKTAFLNGNLDEDVYMTQPKGFVDPQSAKRICKLQKSIYGLKQASRSWKICFDEVVKVL 330

Query: 192 DFDQNFDEPCFYKKIQDRKVIFLVLYVDDILLIGNDVGMLSSTKAWLAQQFSYESFGQS 16
            F +N +EPC YKKI    ++FL+LYVDDILLIGND+ ML S K  L   FS +  G++
Sbjct: 331 GFVKNEEEPCVYKKISGSTLVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEA 389


>gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 810

 Score =  227 bits (579), Expect(2) = 9e-76
 Identities = 110/178 (61%), Positives = 136/178 (76%)
 Frame = -2

Query: 552  KKKRGVDGKVETFKARLVAKGFT*REGIDCDETFSPVAMLKSIRILLSIAAHYDYEVWQM 373
            KK   VDG V  +KARLVAKGF   +G+D DETFSPVAMLKSIRI+L+IAA++DYE+WQM
Sbjct: 552  KKNTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLTIAAYFDYEIWQM 611

Query: 372  DVKTAFLNGHLEECIYMVQPDGFVERGHESKVCKLQRSIYGLKQASRSWNKRFDEVIKTY 193
            DVKTA LNG+L+E +YM QP GFV+     K+CKLQ+SIYGLK+ASRSWN RFD+V+K  
Sbjct: 612  DVKTALLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKKASRSWNIRFDKVVKAL 671

Query: 192  DFDQNFDEPCFYKKIQDRKVIFLVLYVDDILLIGNDVGMLSSTKAWLAQQFSYESFGQ 19
             F +N +EPC YKKI    ++FL+LYVD+ILLIGND+ ML S K  L   F  +  G+
Sbjct: 672  GFVKNEEEPCVYKKISGSALVFLILYVDEILLIGNDIPMLESVKTSLKNSFLMKDLGE 729



 Score = 88.2 bits (217), Expect(2) = 9e-76
 Identities = 60/194 (30%), Positives = 93/194 (47%)
 Frame = -1

Query: 1129 GRPFVITNTTFLEDKYNNKCQSKSMVVLE*MSGSDSTTLIPKT*PSDRQPMVSQTPRERY 950
            G+ FV  +  FLE ++ ++  S SMV LE                      + +TP    
Sbjct: 402  GKVFVARHGVFLEKEFISRKDSGSMVRLE---------------------EIQETPENAS 440

Query: 949  LSGRNDSLFNPIDQENVQGNDEVFVSPERDTNIDENVTIPNEATVQDPPPLRQSQRVIRK 770
             S +        +Q+ VQ  ++V V P                 V +    R+S+R+ R 
Sbjct: 441  TSTQPQQA----EQDVVQQVEQVVVEP-----------------VVEALASRRSKRIRRT 479

Query: 769  PSRYLFVGESKQAISVKQVDDPISYKEAINDVDADLWKLAMNTEMESMHSNQVWELVDAP 590
            P+RY  +   ++ I +   D+P  Y+EA+   D++ W  AM +++ESMH NQVW LVD P
Sbjct: 480  PARYALLTTGQRDILLLDNDEPTIYEEAMVGPDSEKWLGAMKSKIESMHVNQVWNLVDPP 539

Query: 589  KGIKSIGCKWVYKK 548
             G+K+I CKWV+KK
Sbjct: 540  DGVKAIKCKWVFKK 553



 Score =  217 bits (552), Expect = 8e-53
 Identities = 108/199 (54%), Positives = 142/199 (71%)
 Frame = -1

Query: 1804 EINNTSANHNKQNTYHTGDTYLWHLRLGHINLNRIQRLTKDGPLNSIEVEPLQVCDSCLE 1625
            E+ N +A   + N  +   T+ WH RLGHIN  R+++L +DG L+S + E  + C+SCL 
Sbjct: 129  EVYNINAKRQRPNDLNP--TFSWHCRLGHINEKRMEKLYRDGLLHSFDFESFETCESCLL 186

Query: 1624 GKMTKRSFLAKGHRAKEVLELVHSDVCGPMNIPARGGYEYFITFTDDYSRFGYIYLMTRK 1445
            GKMTK  F ++   A E+L LV++DVCG M+  ARG + YFITFT D+SR+GY+YLM +K
Sbjct: 187  GKMTKAPFTSQSEWASELLALVYTDVCGLMSSTARGDFGYFITFTGDFSRYGYVYLMRQK 246

Query: 1444 SEAFEKFKAYRTEVEKHLSKSIKTFRSDRGGEYLSGEFRDYLTENDIVSQLSTPGTPQQN 1265
            SE FEKFK ++ EV+ HL K+IK  RSDRGG+YLS EF ++L E  IV QL+ PGTPQ N
Sbjct: 247  SETFEKFKEFQNEVQNHLGKTIKYLRSDRGGKYLSLEFGNHLKECRIVPQLTLPGTPQWN 306

Query: 1264 RVSERRNRTLLDMVRSMMS 1208
             VSERRNRTLLDM+  + S
Sbjct: 307  GVSERRNRTLLDMLLGLRS 325



 Score = 65.1 bits (157), Expect = 5e-07
 Identities = 43/117 (36%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
 Frame = -2

Query: 2943 ILKQNQLTGENYVDWKRNLMIVLTVEKIDFVLEEDWPEQ-PTETTSKDMRDSYDRWVAAD 2767
            IL++ +L G N++DW RNL IVL  E  +FVL E +P   P    +   R+   R    D
Sbjct: 14   ILEKEKLNGINFMDWYRNLRIVLRQEHKEFVLTEPFPANLPNNVPAAQHREHEKR--CND 71

Query: 2766 KL-ARCYILASMSNVLQQKHDGLETSYDIMKSLKNMFAHQSRRARFEVIRTLQNIRM 2599
             L   C +LA+MS  LQ++++ L+ ++ I+  L+NMF  Q+R  RF   ++L   R+
Sbjct: 72   YLDISCLMLATMSPELQRQYEALD-AHTIITGLRNMFEDQARAERFNTSKSLFACRL 127


>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
          Length = 700

 Score =  234 bits (598), Expect(2) = 1e-75
 Identities = 115/179 (64%), Positives = 140/179 (78%)
 Frame = -2

Query: 552 KKKRGVDGKVETFKARLVAKGFT*REGIDCDETFSPVAMLKSIRILLSIAAHYDYEVWQM 373
           KKK  VDG V  +KARLVAKGF   +G++ DETFSPVAMLKSIRI+L+IAA++DYE+WQM
Sbjct: 400 KKKTDVDGNVHIYKARLVAKGFRQIQGVNYDETFSPVAMLKSIRIVLAIAAYFDYEIWQM 459

Query: 372 DVKTAFLNGHLEECIYMVQPDGFVERGHESKVCKLQRSIYGLKQASRSWNKRFDEVIKTY 193
           DVKTAFL+G+L+E +YM QP GFV+     K+CKLQ+SIYGLKQASRSWN RFDEVIK  
Sbjct: 460 DVKTAFLSGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVIKAL 519

Query: 192 DFDQNFDEPCFYKKIQDRKVIFLVLYVDDILLIGNDVGMLSSTKAWLAQQFSYESFGQS 16
            F +N +EPC YKKI    ++FL+LYVDDILLIGND+ ML S K  L   FS +  G++
Sbjct: 520 GFVKNEEEPCVYKKINGSALMFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEA 578



 Score = 80.1 bits (196), Expect(2) = 1e-75
 Identities = 60/195 (30%), Positives = 91/195 (46%)
 Frame = -1

Query: 1129 GRPFVITNTTFLEDKYNNKCQSKSMVVLE*MSGSDSTTLIPKT*PSDRQPMVSQTPRERY 950
            G+ FV  +  FLE K+ ++  S SM   E  + S ST           QP  ++      
Sbjct: 257  GKVFVARHGVFLEKKFISRKDSGSMETPE--NASTST-----------QPQQAE------ 297

Query: 949  LSGRNDSLFNPIDQENVQGNDEVFVSPERDTNIDENVTIPNEATVQDPPPLRQSQRVIRK 770
                         Q+ VQ  ++V V P                 V + P  R+S+R+ R 
Sbjct: 298  -------------QDVVQQVEQVVVEP-----------------VVEAPASRRSERIRRT 327

Query: 769  PSRYLFVGESKQAISVKQVDDPISYKEAINDVDADLWKLAMNTEMESMHSNQVWELVDAP 590
            P+RY  +   +  I +   D+P +Y+EA+    ++ W  AM +++ESMH NQVW LVD  
Sbjct: 328  PARYALLTTGQCDILLLGNDEPTTYEEAMVGPGSEKWLGAMKSKIESMHVNQVWNLVDPL 387

Query: 589  KGIKSIGCKWVYKKK 545
              +K+I CKWV+KKK
Sbjct: 388  DSVKAIECKWVFKKK 402



 Score =  208 bits (530), Expect = 3e-50
 Identities = 101/165 (61%), Positives = 126/165 (76%)
 Frame = -1

Query: 1702 IQRLTKDGPLNSIEVEPLQVCDSCLEGKMTKRSFLAKGHRAKEVLELVHSDVCGPMNIPA 1523
            +++L +DG L+S + E  + C+SCL GK+TK  F  +  RA E+L LVH+DVCGPM+  A
Sbjct: 1    MEKLHRDGLLHSFDFESFETCESCLLGKITKAPFTGQSERASELLRLVHTDVCGPMSSTA 60

Query: 1522 RGGYEYFITFTDDYSRFGYIYLMTRKSEAFEKFKAYRTEVEKHLSKSIKTFRSDRGGEYL 1343
            RGG+ YFI FTDD+SR+GY+YLM  KSE+FEKFK +  EV+ HL K+IK  RSDRGGEY 
Sbjct: 61   RGGFGYFIIFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYW 120

Query: 1342 SGEFRDYLTENDIVSQLSTPGTPQQNRVSERRNRTLLDMVRSMMS 1208
            S EF ++L E  IV QL+ PGTPQ N VS+RRNRTLLDMVRSMMS
Sbjct: 121  SLEFGNHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDMVRSMMS 165


>gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
          Length = 1303

 Score =  227 bits (579), Expect(2) = 2e-74
 Identities = 112/179 (62%), Positives = 136/179 (75%)
 Frame = -2

Query: 552  KKKRGVDGKVETFKARLVAKGFT*REGIDCDETFSPVAMLKSIRILLSIAAHYDYEVWQM 373
            KKK  +DGKV TFKARLVAKGFT   G+D DETFSPVA +KSIRI+L+IAA +DYE+WQM
Sbjct: 829  KKKTDMDGKVHTFKARLVAKGFTQTPGVDYDETFSPVAKIKSIRIMLAIAAFHDYEIWQM 888

Query: 372  DVKTAFLNGHLEECIYMVQPDGFVERGHESKVCKLQRSIYGLKQASRSWNKRFDEVIKTY 193
            DVKTAFLNG L E +YM QP+GFV+  + +KVCKL+RSIYGLKQASRSWN  F E +K +
Sbjct: 889  DVKTAFLNGKLTEDVYMNQPEGFVDAKYPNKVCKLERSIYGLKQASRSWNLCFHEKVKEF 948

Query: 192  DFDQNFDEPCFYKKIQDRKVIFLVLYVDDILLIGNDVGMLSSTKAWLAQQFSYESFGQS 16
             F ++ DE C Y K     V FLVLYVDDILL+GND+  L   KAWL + F+ +  G++
Sbjct: 949  GFSRSEDESCVYVKASGSIVTFLVLYVDDILLMGNDIPTLQDVKAWLGKCFAMKDLGEA 1007



 Score = 83.6 bits (205), Expect(2) = 2e-74
 Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 6/145 (4%)
 Frame = -1

Query: 961  RERYLSGRNDSLFNPIDQENVQGNDEVFVSPERDTNIDENVTI-PNEATVQDPPPLRQSQ 785
            RER L  + DS  + ID E +Q + +     E     +E V + P + ++    PLR+S 
Sbjct: 692  RERELIFKEDS-GSTIDLEEIQESSDDATLGETSNQHEEEVPVGPTDVSL----PLRRSG 746

Query: 784  RVIRKPSRYLF--VGESKQAISVK---QVDDPISYKEAINDVDADLWKLAMNTEMESMHS 620
            RV   P  Y F    +    +S +    +D+P +Y+EA+   ++  WK AM++E++SM+ 
Sbjct: 747  RVSMPPEFYGFHITSDGDTFVSDRTLINLDEPANYQEAVAGPESAKWKEAMDSEIKSMYD 806

Query: 619  NQVWELVDAPKGIKSIGCKWVYKKK 545
            NQVW LVD   G K++GCKW++KKK
Sbjct: 807  NQVWNLVDNVPGRKTVGCKWIFKKK 831



 Score =  238 bits (608), Expect = 3e-59
 Identities = 134/309 (43%), Positives = 177/309 (57%), Gaps = 8/309 (2%)
 Frame = -1

Query: 2110 LQESRKLNEGQFTITXXXXXXXXXXXXXXVYSYFSSSRRLIFKDCYYVPQMKRNLISISC 1931
            L+ESR++  G+  +                    SS   +   +C Y P+M RN+IS   
Sbjct: 292  LKESREVEHGRLNLIMGNRRSSPVTKIGVYSLVLSSDVSIELFNCCYSPEMARNIISFHA 351

Query: 1930 LIGQGYSLDFAPN-KALYILMNKAPICAGYLMNGLYI-------LNYSTNEINNTSANHN 1775
            L  QG+   F  N  ++ +  N       Y  +G+Y        L +S N I++TS    
Sbjct: 352  LFRQGFHFSFDNNIGSISVFKNGILNFTAYPCDGVYETVECVDNLGHSVNYIDSTSGVEK 411

Query: 1774 KQNTYHTGDTYLWHLRLGHINLNRIQRLTKDGPLNSIEVEPLQVCDSCLEGKMTKRSFLA 1595
                       LWH RLGHI+  RI +L KDG L S +++   VC+SCL GKMTK  F  
Sbjct: 412  ---------ACLWHSRLGHISKKRIAQLQKDGVLESFDLKSDDVCESCLLGKMTKSPFKG 462

Query: 1594 KGHRAKEVLELVHSDVCGPMNIPARGGYEYFITFTDDYSRFGYIYLMTRKSEAFEKFKAY 1415
               R + +L+++H+DVCGP     + G  +++TFTDD+SR+GYIYL+  KS+ FEKFK +
Sbjct: 463  SFERGEGLLDIIHTDVCGPFRSTTKDGTRFYVTFTDDFSRYGYIYLIKHKSDTFEKFKEF 522

Query: 1414 RTEVEKHLSKSIKTFRSDRGGEYLSGEFRDYLTENDIVSQLSTPGTPQQNRVSERRNRTL 1235
            + EVE  L + IK  RSDRGGEYLS EF DYL E  IVSQL+ P TPQ N V+ERRNRTL
Sbjct: 523  KNEVENQLGRKIKMLRSDRGGEYLSIEFLDYLKECGIVSQLTPPRTPQLNGVAERRNRTL 582

Query: 1234 LDMVRSMMS 1208
            LDMVRSMMS
Sbjct: 583  LDMVRSMMS 591



 Score = 94.7 bits (234), Expect = 6e-16
 Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 13/245 (5%)
 Frame = -2

Query: 2883 IVLTVEKIDFVLEEDWPEQPTETTSKDMRDSYDRWVAADKLARCYILASMSNVLQQKHDG 2704
            + L  E  ++VLE +  +   ET + +   SY +         C ++A+M+  LQ+ ++ 
Sbjct: 1    MALRYENKEYVLETELVDVDPETATPEEIASYQKHSDDATKVACIMIATMNPELQRIYED 60

Query: 2703 LETSYDIMKSLKNMFAHQSRRARFEVIRTLQNIRMKPGTPVKDHMLIMIGHFNVAENLGA 2524
                +++ K L   F  Q R  R EV++   N + K G  +  H+  M G+      L  
Sbjct: 61   Y-WPFEMHKELAEKFRKQERIERCEVVKDFTNSKPKDGESICAHVQRMQGYVERLRKLAM 119

Query: 2523 TIDQDTQVDMVLNSLPDMFSQFTVDYHLHKMDMPLTELMNELQNVESGLKSKGGDA--YA 2350
             + ++  VD+VLNSLP  + QF + YHL+     LTEL   L+  E G+K K   +    
Sbjct: 120  PVPEELAVDIVLNSLPSSYDQFRLAYHLNNNQANLTELHRMLRVAEDGMKGKSVPSVNQP 179

Query: 2349 AIXXXXXXXXXXXXXXXXXRANKKQESNKTNAD-----------GKPKGKCFSCGEKGHW 2203
             +                    K Q  + +N                +  CF C EKGHW
Sbjct: 180  VLAIGSGKGKKRKGPPKQNWREKVQVGSSSNGSRTKSSHIPCVANPDEANCFYCKEKGHW 239

Query: 2202 KKDCP 2188
            K+ CP
Sbjct: 240  KRSCP 244


>gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 829

 Score =  233 bits (593), Expect(2) = 8e-74
 Identities = 113/179 (63%), Positives = 139/179 (77%)
 Frame = -2

Query: 552  KKKRGVDGKVETFKARLVAKGFT*REGIDCDETFSPVAMLKSIRILLSIAAHYDYEVWQM 373
            KKK  VDG V  +KARLVAKGF   +G+D DETFSP AMLKSIRI+L+IAA+++YE+WQM
Sbjct: 631  KKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPFAMLKSIRIVLAIAAYFNYEIWQM 690

Query: 372  DVKTAFLNGHLEECIYMVQPDGFVERGHESKVCKLQRSIYGLKQASRSWNKRFDEVIKTY 193
            DVKT FLNG+L+E +YM QP GFV+     K+CKLQ+SIYGLKQASRSWN RFDEV+K  
Sbjct: 691  DVKTTFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVVKAL 750

Query: 192  DFDQNFDEPCFYKKIQDRKVIFLVLYVDDILLIGNDVGMLSSTKAWLAQQFSYESFGQS 16
             F +N +EPC YKKI    ++FL+LYVDDILLIGND+ ML S K  L  +FS +  G++
Sbjct: 751  RFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDILMLESVKTSLKNRFSMKDLGEA 809



 Score = 76.3 bits (186), Expect(2) = 8e-74
 Identities = 39/98 (39%), Positives = 60/98 (61%)
 Frame = -1

Query: 838 TIPNEATVQDPPPLRQSQRVIRKPSRYLFVGESKQAISVKQVDDPISYKEAINDVDADLW 659
           T  N +T   P   +Q+++ + +  R+   G     + ++  D+P +Y EA+   D++ W
Sbjct: 540 TQENASTSTQP---QQAEQDVVQQHRF-HEGPKGYGVHLRDDDEPTTYVEAMVGPDSEKW 595

Query: 658 KLAMNTEMESMHSNQVWELVDAPKGIKSIGCKWVYKKK 545
             AM +E+ESMH NQVW LVD P G+K+I CKWV+KKK
Sbjct: 596 LGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWVFKKK 633



 Score =  154 bits (389), Expect = 7e-34
 Identities = 72/139 (51%), Positives = 97/139 (69%)
 Frame = -1

Query: 1813 STNEINNTSANHNKQNTYHTGDTYLWHLRLGHINLNRIQRLTKDGPLNSIEVEPLQVCDS 1634
            S+  + N +A     N  +   T++WH RLGHIN  R+++L +DG L+S + E  + C+S
Sbjct: 361  SSTSVYNINAKRQLPNDLNP--TFIWHCRLGHINEKRMKKLHRDGLLHSFDFESFETCES 418

Query: 1633 CLEGKMTKRSFLAKGHRAKEVLELVHSDVCGPMNIPARGGYEYFITFTDDYSRFGYIYLM 1454
            CL GKMTK  F  +  RA E+L LVH+DVCGPM+  ARGG+ YFITFTDD+SR+GY+YLM
Sbjct: 419  CLLGKMTKAPFTGQSERASELLGLVHTDVCGPMSSTARGGFGYFITFTDDFSRYGYVYLM 478

Query: 1453 TRKSEAFEKFKAYRTEVEK 1397
              KSE+FEKFK ++ E  K
Sbjct: 479  RHKSESFEKFKKFQNEETK 497



 Score =  122 bits (305), Expect = 4e-24
 Identities = 73/254 (28%), Positives = 123/254 (48%), Gaps = 3/254 (1%)
 Frame = -2

Query: 2943 ILKQNQLTGENYVDWKRNLMIVLTVEKIDFVLEEDWPEQPTETTSKDMRDSYDRWVAADK 2764
            IL++ +LTG N++DW RNL IVL  E  +FVL E +P           R  +++      
Sbjct: 93   ILEKEKLTGTNFMDWYRNLRIVLRQEHKEFVLTESFPANLPNNALAAQRREHEKRCNDYL 152

Query: 2763 LARCYILASMSNVLQQKHDGLETSYDIMKSLKNMFAHQSRRARFEVIRTLQNIRMKPGTP 2584
               C +LA+MS  LQ++++ L+ ++ I+  L+NMF  Q+R  RF   ++L   R+  G P
Sbjct: 153  DISCLMLATMSPELQRQYEALD-AHTIITGLRNMFEDQARAERFNTSKSLFACRLAEGNP 211

Query: 2583 VKDHMLIMIGHFNVAENLGATIDQDTQVDMVLNSLPDMFSQFTVDYHLHKMDMPLTELMN 2404
            V  H++ +IG+    + LG  + ++   D++L SLP  F  F ++++++ ++  L EL  
Sbjct: 212  VSPHVIKIIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTLAELHG 271

Query: 2403 ELQNVESGLKSKGGDAYAAIXXXXXXXXXXXXXXXXXRANKKQESNKTNAD--GKPK-GK 2233
             L+  E  +K                                  ++KT     G  K  +
Sbjct: 272  MLKTAEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTSNSKTKVQKTGPAKDAE 331

Query: 2232 CFSCGEKGHWKKDC 2191
            CF   E GHWK++C
Sbjct: 332  CFFYKETGHWKRNC 345


>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1073

 Score =  231 bits (588), Expect(2) = 3e-72
 Identities = 112/179 (62%), Positives = 138/179 (77%)
 Frame = -2

Query: 552  KKKRGVDGKVETFKARLVAKGFT*REGIDCDETFSPVAMLKSIRILLSIAAHYDYEVWQM 373
            KKK  VDG V  +KARLVAKGF   +G+D DETFSPVAMLKSIRI+L+IAA++DYE+WQM
Sbjct: 776  KKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQM 835

Query: 372  DVKTAFLNGHLEECIYMVQPDGFVERGHESKVCKLQRSIYGLKQASRSWNKRFDEVIKTY 193
            +VKTAFLNG+ +E +YM QP GFV+      +CKLQ+SIYGLKQASRSWN RFDE++K  
Sbjct: 836  EVKTAFLNGNHDEDVYMTQPKGFVDLQSAKMICKLQKSIYGLKQASRSWNIRFDELVKAL 895

Query: 192  DFDQNFDEPCFYKKIQDRKVIFLVLYVDDILLIGNDVGMLSSTKAWLAQQFSYESFGQS 16
             F +N +EPC YKKI    ++FL+LYVDDILLIGND+ ML S K  L   FS +  G++
Sbjct: 896  GFLKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEA 954



 Score = 72.8 bits (177), Expect(2) = 3e-72
 Identities = 33/71 (46%), Positives = 48/71 (67%)
 Frame = -1

Query: 757 LFVGESKQAISVKQVDDPISYKEAINDVDADLWKLAMNTEMESMHSNQVWELVDAPKGIK 578
           L  G  +  + ++  D P +Y+EA+  +D++    AM +E+ESMH NQVW LVD P G+K
Sbjct: 708 LHEGPKEYDVHLRDNDKPTTYEEAMVGLDSEKCLGAMKSEIESMHVNQVWNLVDPPDGVK 767

Query: 577 SIGCKWVYKKK 545
           +I CKWV+KKK
Sbjct: 768 AIECKWVFKKK 778



 Score =  252 bits (644), Expect = 2e-63
 Identities = 137/296 (46%), Positives = 179/296 (60%)
 Frame = -1

Query: 2110 LQESRKLNEGQFTITXXXXXXXXXXXXXXVYSYFSSSRRLIFKDCYYVPQMKRNLISISC 1931
            L+ SR L  G+  I               +     S   L   +CY +P + +N+IS SC
Sbjct: 411  LKRSRSLARGRVDIRVGNGERVAVVAVGTMTLSLPSGLVLELNNCYCIPALCKNVISASC 470

Query: 1930 LIGQGYSLDFAPNKALYILMNKAPICAGYLMNGLYILNYSTNEINNTSANHNKQNTYHTG 1751
            L  +GY      N    +  N        +MNGLYI+N     + N +A     N  +  
Sbjct: 471  LQAEGYGFRSMDN-GCSVYYNDLFYFHAPMMNGLYIVNLDGCSVYNINAKRQHPNDLNP- 528

Query: 1750 DTYLWHLRLGHINLNRIQRLTKDGPLNSIEVEPLQVCDSCLEGKMTKRSFLAKGHRAKEV 1571
             T++WH RLGHIN  R+++L +DG L+S + E  + C+SCL GKMTK  F  +  RA E+
Sbjct: 529  -TFIWHCRLGHINEKRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSKRASEL 587

Query: 1570 LELVHSDVCGPMNIPARGGYEYFITFTDDYSRFGYIYLMTRKSEAFEKFKAYRTEVEKHL 1391
            L LVH+DVCGPM+  ARGG+ YFITFTDD+SR GY+YLM  KSE+ EKFK ++ E + +L
Sbjct: 588  LGLVHTDVCGPMSSTARGGFGYFITFTDDFSRCGYVYLMRHKSESVEKFKKFQNEEQNYL 647

Query: 1390 SKSIKTFRSDRGGEYLSGEFRDYLTENDIVSQLSTPGTPQQNRVSERRNRTLLDMV 1223
             K+IK  RSDRGGEYLS EF ++L E  IV QL+ PGTPQ N VSERRNRTLLDM+
Sbjct: 648  GKTIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDML 703



 Score =  119 bits (299), Expect = 2e-23
 Identities = 73/254 (28%), Positives = 121/254 (47%), Gaps = 3/254 (1%)
 Frame = -2

Query: 2943 ILKQNQLTGENYVDWKRNLMIVLTVEKIDFVLEEDWPEQPTETTSKDMRDSYDRWVAADK 2764
            IL++ +LT  N +DW RNL IVL  E  +FVL + +P           R  ++R      
Sbjct: 106  ILEKEKLTRTNIMDWYRNLRIVLRQEHKEFVLTQPFPADLPNNAPAAQRREHERRCKEYL 165

Query: 2763 LARCYILASMSNVLQQKHDGLETSYDIMKSLKNMFAHQSRRARFEVIRTLQNIRMKPGTP 2584
               C +LA+MS  LQ++++ L+ ++ I+  L+NMF  Q+R  RF   ++L   R+  G P
Sbjct: 166  DISCLMLATMSPELQRQYEALD-AHTIITGLRNMFEDQARAERFNTSKSLFACRLAEGNP 224

Query: 2583 VKDHMLIMIGHFNVAENLGATIDQDTQVDMVLNSLPDMFSQFTVDYHLHKMDMPLTELMN 2404
            V  H++ MIG+    + LG  + ++   D++L SLP  F  F ++++++ ++  L EL  
Sbjct: 225  VSPHVIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTLAELHG 284

Query: 2403 ELQNVESGLKSKGGDAYAAIXXXXXXXXXXXXXXXXXRANKKQESNKTNAD--GKPK-GK 2233
             L+  E  +K                                  ++KT     G  K  +
Sbjct: 285  MLKTAEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTSNSKTKVQKTGPAKDAE 344

Query: 2232 CFSCGEKGHWKKDC 2191
            CF   E GHWK++C
Sbjct: 345  CFFYKETGHWKRNC 358


>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 655

 Score =  234 bits (598), Expect(2) = 2e-71
 Identities = 115/179 (64%), Positives = 140/179 (78%)
 Frame = -2

Query: 552 KKKRGVDGKVETFKARLVAKGFT*REGIDCDETFSPVAMLKSIRILLSIAAHYDYEVWQM 373
           KKK  VDG V  +KARLVAKGF   +G++ DETFSPVAMLKSIRI+L+IAA++DYE+WQM
Sbjct: 355 KKKTDVDGNVHIYKARLVAKGFRQIQGVNYDETFSPVAMLKSIRIVLAIAAYFDYEIWQM 414

Query: 372 DVKTAFLNGHLEECIYMVQPDGFVERGHESKVCKLQRSIYGLKQASRSWNKRFDEVIKTY 193
           DVKTAFL+G+L+E +YM QP GFV+     K+CKLQ+SIYGLKQASRSWN RFDEVIK  
Sbjct: 415 DVKTAFLSGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVIKAL 474

Query: 192 DFDQNFDEPCFYKKIQDRKVIFLVLYVDDILLIGNDVGMLSSTKAWLAQQFSYESFGQS 16
            F +N +EPC YKKI    ++FL+LYVDDILLIGND+ ML S K  L   FS +  G++
Sbjct: 475 GFVKNEEEPCVYKKINGSALMFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEA 533



 Score = 66.2 bits (160), Expect(2) = 2e-71
 Identities = 30/71 (42%), Positives = 45/71 (63%)
 Frame = -1

Query: 757 LFVGESKQAISVKQVDDPISYKEAINDVDADLWKLAMNTEMESMHSNQVWELVDAPKGIK 578
           L  G     + ++  D+P +Y+EA+    ++ W  AM +++ESMH NQVW LVD    +K
Sbjct: 287 LHEGPKGYGVHLRGNDEPTTYEEAMVGPGSEKWLGAMKSKIESMHVNQVWNLVDPLDSVK 346

Query: 577 SIGCKWVYKKK 545
           +I CKWV+KKK
Sbjct: 347 AIECKWVFKKK 357



 Score =  208 bits (530), Expect = 3e-50
 Identities = 101/165 (61%), Positives = 126/165 (76%)
 Frame = -1

Query: 1702 IQRLTKDGPLNSIEVEPLQVCDSCLEGKMTKRSFLAKGHRAKEVLELVHSDVCGPMNIPA 1523
            +++L +DG L+S + E  + C+SCL GK+TK  F  +  RA E+L LVH+DVCGPM+  A
Sbjct: 1    MEKLHRDGLLHSFDFESFETCESCLLGKITKAPFTGQSERASELLRLVHTDVCGPMSSTA 60

Query: 1522 RGGYEYFITFTDDYSRFGYIYLMTRKSEAFEKFKAYRTEVEKHLSKSIKTFRSDRGGEYL 1343
            RGG+ YFI FTDD+SR+GY+YLM  KSE+FEKFK +  EV+ HL K+IK  RSDRGGEY 
Sbjct: 61   RGGFGYFIIFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYW 120

Query: 1342 SGEFRDYLTENDIVSQLSTPGTPQQNRVSERRNRTLLDMVRSMMS 1208
            S EF ++L E  IV QL+ PGTPQ N VS+RRNRTLLDMVRSMMS
Sbjct: 121  SLEFGNHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDMVRSMMS 165


>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1063

 Score =  231 bits (588), Expect(2) = 1e-68
 Identities = 112/179 (62%), Positives = 138/179 (77%)
 Frame = -2

Query: 552  KKKRGVDGKVETFKARLVAKGFT*REGIDCDETFSPVAMLKSIRILLSIAAHYDYEVWQM 373
            KKK  VDG V  +KARLVAKGF   +G+D DETFSPVAMLKSIRI+L+IAA++DYE+WQM
Sbjct: 766  KKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQM 825

Query: 372  DVKTAFLNGHLEECIYMVQPDGFVERGHESKVCKLQRSIYGLKQASRSWNKRFDEVIKTY 193
            +VKTAFLNG+ +E +YM QP GFV+      +CKLQ+SIYGLKQASRSWN RFDE++K  
Sbjct: 826  EVKTAFLNGNHDEDVYMTQPKGFVDLQSAKMICKLQKSIYGLKQASRSWNIRFDELVKAL 885

Query: 192  DFDQNFDEPCFYKKIQDRKVIFLVLYVDDILLIGNDVGMLSSTKAWLAQQFSYESFGQS 16
             F +N +EPC YKKI    ++FL+LYVDDILLIGND+ ML S K  L   FS +  G++
Sbjct: 886  GFLKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEA 944



 Score = 60.8 bits (146), Expect(2) = 1e-68
 Identities = 27/48 (56%), Positives = 36/48 (75%)
 Frame = -1

Query: 688 AINDVDADLWKLAMNTEMESMHSNQVWELVDAPKGIKSIGCKWVYKKK 545
           A+  +D++    AM +E+ESMH NQVW LVD P G+K+I CKWV+KKK
Sbjct: 721 AMVGLDSEKCLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWVFKKK 768



 Score =  252 bits (644), Expect = 2e-63
 Identities = 137/296 (46%), Positives = 179/296 (60%)
 Frame = -1

Query: 2110 LQESRKLNEGQFTITXXXXXXXXXXXXXXVYSYFSSSRRLIFKDCYYVPQMKRNLISISC 1931
            L+ SR L  G+  I               +     S   L   +CY +P + +N+IS SC
Sbjct: 411  LKRSRSLARGRVDIRVGNGERVAVVAVGTMTLSLPSGLVLELNNCYCIPALCKNVISASC 470

Query: 1930 LIGQGYSLDFAPNKALYILMNKAPICAGYLMNGLYILNYSTNEINNTSANHNKQNTYHTG 1751
            L  +GY      N    +  N        +MNGLYI+N     + N +A     N  +  
Sbjct: 471  LQAEGYGFRSMDN-GCSVYYNDLFYFHAPMMNGLYIVNLDGCSVYNINAKRQHPNDLNP- 528

Query: 1750 DTYLWHLRLGHINLNRIQRLTKDGPLNSIEVEPLQVCDSCLEGKMTKRSFLAKGHRAKEV 1571
             T++WH RLGHIN  R+++L +DG L+S + E  + C+SCL GKMTK  F  +  RA E+
Sbjct: 529  -TFIWHCRLGHINEKRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSKRASEL 587

Query: 1570 LELVHSDVCGPMNIPARGGYEYFITFTDDYSRFGYIYLMTRKSEAFEKFKAYRTEVEKHL 1391
            L LVH+DVCGPM+  ARGG+ YFITFTDD+SR GY+YLM  KSE+ EKFK ++ E + +L
Sbjct: 588  LGLVHTDVCGPMSSTARGGFGYFITFTDDFSRCGYVYLMRHKSESVEKFKKFQNEEQNYL 647

Query: 1390 SKSIKTFRSDRGGEYLSGEFRDYLTENDIVSQLSTPGTPQQNRVSERRNRTLLDMV 1223
             K+IK  RSDRGGEYLS EF ++L E  IV QL+ PGTPQ N VSERRNRTLLDM+
Sbjct: 648  GKTIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDML 703



 Score =  119 bits (299), Expect = 2e-23
 Identities = 73/254 (28%), Positives = 121/254 (47%), Gaps = 3/254 (1%)
 Frame = -2

Query: 2943 ILKQNQLTGENYVDWKRNLMIVLTVEKIDFVLEEDWPEQPTETTSKDMRDSYDRWVAADK 2764
            IL++ +LT  N +DW RNL IVL  E  +FVL + +P           R  ++R      
Sbjct: 106  ILEKEKLTRTNIMDWYRNLRIVLRQEHKEFVLTQPFPADLPNNAPAAQRREHERRCKEYL 165

Query: 2763 LARCYILASMSNVLQQKHDGLETSYDIMKSLKNMFAHQSRRARFEVIRTLQNIRMKPGTP 2584
               C +LA+MS  LQ++++ L+ ++ I+  L+NMF  Q+R  RF   ++L   R+  G P
Sbjct: 166  DISCLMLATMSPELQRQYEALD-AHTIITGLRNMFEDQARAERFNTSKSLFACRLAEGNP 224

Query: 2583 VKDHMLIMIGHFNVAENLGATIDQDTQVDMVLNSLPDMFSQFTVDYHLHKMDMPLTELMN 2404
            V  H++ MIG+    + LG  + ++   D++L SLP  F  F ++++++ ++  L EL  
Sbjct: 225  VSPHVIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTLAELHG 284

Query: 2403 ELQNVESGLKSKGGDAYAAIXXXXXXXXXXXXXXXXXRANKKQESNKTNAD--GKPK-GK 2233
             L+  E  +K                                  ++KT     G  K  +
Sbjct: 285  MLKTAEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTSNSKTKVQKTGPAKDAE 344

Query: 2232 CFSCGEKGHWKKDC 2191
            CF   E GHWK++C
Sbjct: 345  CFFYKETGHWKRNC 358


>emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]
          Length = 668

 Score =  268 bits (684), Expect = 4e-68
 Identities = 133/191 (69%), Positives = 151/191 (79%)
 Frame = -2

Query: 588 KG*NPSGASGSTKKKRGVDGKVETFKARLVAKGFT*REGIDCDETFSPVAMLKSIRILLS 409
           +G  P G     K KRG +GKVETFKARLVAKGFT +EG+D ++TFSPV MLKSIRILLS
Sbjct: 184 EGIKPIGCKWIYKXKRGPNGKVETFKARLVAKGFTQKEGVDYEDTFSPVXMLKSIRILLS 243

Query: 408 IAAHYDYEVWQMDVKTAFLNGHLEECIYMVQPDGFVERGHESKVCKLQRSIYGLKQASRS 229
           I A+YDYE+WQMDVKT FLNGHLEE IYMVQP+GFV +  E KVCKLQRSIYGLKQASRS
Sbjct: 244 IXAYYDYEIWQMDVKTXFLNGHLEETIYMVQPEGFVVKDQEQKVCKLQRSIYGLKQASRS 303

Query: 228 WNKRFDEVIKTYDFDQNFDEPCFYKKIQDRKVIFLVLYVDDILLIGNDVGMLSSTKAWLA 49
           WN  F+E IK+Y F+QN  EPC YK+I   KV+FLVLYVDDILLIGNDV  LS  K WLA
Sbjct: 304 WNIIFNEAIKSYGFEQNLGEPCVYKQIGGDKVVFLVLYVDDILLIGNDVESLSKVKNWLA 363

Query: 48  QQFSYESFGQS 16
            QF  +  G++
Sbjct: 364 SQFQMKDLGEA 374



 Score =  107 bits (268), Expect = 7e-20
 Identities = 55/113 (48%), Positives = 75/113 (66%), Gaps = 2/113 (1%)
 Frame = -1

Query: 877 VSPERDTNIDENVTIPNEATVQD--PPPLRQSQRVIRKPSRYLFVGESKQAISVKQVDDP 704
           +SP   T ++       E T QD  PPP R+S R IR P RY   GE++ A++    DDP
Sbjct: 89  ISPTPTTVVERQ---RKETTAQDLTPPPPRRSGREIRLPIRYRENGEAQVAVTDGSDDDP 145

Query: 703 ISYKEAINDVDADLWKLAMNTEMESMHSNQVWELVDAPKGIKSIGCKWVYKKK 545
           +++K A++DVD + W+ AM  E+ESM+SN VW+LVD P+GIK IGCKW+YK K
Sbjct: 146 LTFKMAMDDVDREKWQEAMKLEIESMYSNSVWKLVDLPEGIKPIGCKWIYKXK 198