BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia22_contig00009448
         (3917 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011096303.1| PREDICTED: DNA-directed RNA polymerase II su...  1593   0.0  
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode...  1593   0.0  
ref|XP_009605281.1| PREDICTED: DNA-directed RNA polymerase II su...  1592   0.0  
ref|XP_009605280.1| PREDICTED: DNA-directed RNA polymerase II su...  1592   0.0  
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta...  1591   0.0  
ref|XP_009765276.1| PREDICTED: DNA-directed RNA polymerase II su...  1590   0.0  
ref|XP_009765275.1| PREDICTED: DNA-directed RNA polymerase II su...  1590   0.0  
ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II su...  1590   0.0  
ref|XP_012091599.1| PREDICTED: DNA-directed RNA polymerase II su...  1590   0.0  
gb|KDP20966.1| hypothetical protein JCGZ_21437 [Jatropha curcas]     1590   0.0  
gb|KDO44202.1| hypothetical protein CISIN_1g000996mg [Citrus sin...  1589   0.0  
gb|KDO44200.1| hypothetical protein CISIN_1g000996mg [Citrus sin...  1589   0.0  
ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citr...  1589   0.0  
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ...  1589   0.0  
gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrh...  1589   0.0  
ref|XP_012830376.1| PREDICTED: DNA-directed RNA polymerase II su...  1588   0.0  
ref|XP_011027835.1| PREDICTED: DNA-directed RNA polymerase II su...  1588   0.0  
ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II su...  1587   0.0  
ref|XP_010108197.1| DNA-directed RNA polymerase II subunit [Moru...  1583   0.0  
ref|XP_012449722.1| PREDICTED: DNA-directed RNA polymerase II su...  1583   0.0  

>ref|XP_011096303.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sesamum
            indicum]
          Length = 1193

 Score = 1593 bits (4126), Expect = 0.0
 Identities = 781/813 (96%), Positives = 797/813 (98%)
 Frame = -3

Query: 2925 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2746
            KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQ
Sbjct: 367  KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQ 426

Query: 2745 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2566
            KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 427  KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 486

Query: 2565 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 2386
            LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI
Sbjct: 487  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 546

Query: 2385 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVG 2206
            LEFLEEWGTENF+EISPAVIPQATKIFVNGCWVGIHR+PDMLV T      RVDVNTEVG
Sbjct: 547  LEFLEEWGTENFKEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTLRRLRRRVDVNTEVG 606

Query: 2205 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGF 2026
            VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDI+ALQQRESP++GGWH+LVAKGF
Sbjct: 607  VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPEDGGWHDLVAKGF 666

Query: 2025 IEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 1846
            IEY+D      TMISMTI DLV+ARLNP EAYSDTYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 667  IEYIDTEEEETTMISMTIGDLVNARLNPTEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 726

Query: 1845 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1666
            QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 727  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 786

Query: 1665 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNT 1486
            AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR NT
Sbjct: 787  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANT 846

Query: 1485 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTSLRHS 1306
            MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+PDDAQGQAARYTKRDHSTSLRHS
Sbjct: 847  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISPDDAQGQAARYTKRDHSTSLRHS 906

Query: 1305 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 1126
            ETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+E
Sbjct: 907  ETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLE 966

Query: 1125 GITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 946
            GITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY
Sbjct: 967  GITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1026

Query: 945  QMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 766
            QMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 1027 QMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1086

Query: 765  DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 586
            DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE+CGLIAIANLKKNSFECRGC
Sbjct: 1087 DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEQCGLIAIANLKKNSFECRGC 1146

Query: 585  KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 487
            KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1147 KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1179



 Score =  634 bits (1634), Expect = e-178
 Identities = 317/344 (92%), Positives = 329/344 (95%)
 Frame = -1

Query: 3917 EEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 3738
            EEITQEDAW VISAYFE KGLVRQQLDSFDEFIQNTMQEIVDE+ADIEIRPESQHNPGHQ
Sbjct: 20   EEITQEDAWPVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDEAADIEIRPESQHNPGHQ 79

Query: 3737 PDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIRKG 3558
            P+FAETIYKISFGQIYLSKPMMTESDGETATLFP+AARLRNLTYSAPLYVDV+KRVI+KG
Sbjct: 80   PEFAETIYKISFGQIYLSKPMMTESDGETATLFPRAARLRNLTYSAPLYVDVTKRVIKKG 139

Query: 3557 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 3378
            HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK
Sbjct: 140  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 199

Query: 3377 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSG 3198
            VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSR SAKGGSSG
Sbjct: 200  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRASAKGGSSG 259

Query: 3197 QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQN 3018
            QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+F+DTQMMELLRPSLEEAFVIQN
Sbjct: 260  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFSDTQMMELLRPSLEEAFVIQN 319

Query: 3017 QQVALDYIGKRGSTVGVTREKRIKYAXXXXXKLIILGISFTGFC 2886
            QQVALDYIGKRG+TVGVTREKRIKYA     K ++  +    +C
Sbjct: 320  QQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYC 363


>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score = 1593 bits (4124), Expect = 0.0
 Identities = 778/813 (95%), Positives = 797/813 (98%)
 Frame = -3

Query: 2925 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2746
            KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQ
Sbjct: 365  KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQ 424

Query: 2745 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2566
            KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 425  KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 484

Query: 2565 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 2386
            LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI
Sbjct: 485  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 544

Query: 2385 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVG 2206
            LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLV+T      RVDVNTEVG
Sbjct: 545  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVG 604

Query: 2205 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGF 2026
            VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIK+KDIQALQQRE+P++GGWH+LVAKGF
Sbjct: 605  VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHDLVAKGF 664

Query: 2025 IEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 1846
            IEY+D      TMISMTINDLVSARLNP+EAYS+TYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 665  IEYIDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHN 724

Query: 1845 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1666
            QSPRNTYQSAMGKQAMGIYVTNYQFRMDT+AYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 725  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTVAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 784

Query: 1665 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNT 1486
            AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR NT
Sbjct: 785  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANT 844

Query: 1485 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTSLRHS 1306
            MGMRHGSYDKLDDDGLAPPGTRVSGEDV+IGKTTPIA D+AQG AARYT+RDHSTSLRHS
Sbjct: 845  MGMRHGSYDKLDDDGLAPPGTRVSGEDVVIGKTTPIAQDEAQGPAARYTRRDHSTSLRHS 904

Query: 1305 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 1126
            ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+E
Sbjct: 905  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTME 964

Query: 1125 GITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 946
            GITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY
Sbjct: 965  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1024

Query: 945  QMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 766
            QMRGFETMYNGHTGR+LT+MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 1025 QMRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1084

Query: 765  DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 586
            DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGC
Sbjct: 1085 DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGC 1144

Query: 585  KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 487
            KNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1145 KNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 1177



 Score =  639 bits (1647), Expect = e-180
 Identities = 321/344 (93%), Positives = 330/344 (95%)
 Frame = -1

Query: 3917 EEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 3738
            EEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ
Sbjct: 18   EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 77

Query: 3737 PDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIRKG 3558
             DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVI+KG
Sbjct: 78   SDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 137

Query: 3557 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 3378
            HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK
Sbjct: 138  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 197

Query: 3377 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSG 3198
            VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSG
Sbjct: 198  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 257

Query: 3197 QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQN 3018
            QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQN
Sbjct: 258  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQN 317

Query: 3017 QQVALDYIGKRGSTVGVTREKRIKYAXXXXXKLIILGISFTGFC 2886
            QQVALDYIGKRG+TVGVT+EKRIKYA     K ++  +    +C
Sbjct: 318  QQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYC 361


>ref|XP_009605281.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X2
            [Nicotiana tomentosiformis]
          Length = 1094

 Score = 1592 bits (4123), Expect = 0.0
 Identities = 781/813 (96%), Positives = 796/813 (97%)
 Frame = -3

Query: 2925 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2746
            KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ
Sbjct: 268  KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 327

Query: 2745 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2566
            KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 328  KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 387

Query: 2565 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 2386
            LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI
Sbjct: 388  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 447

Query: 2385 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVG 2206
            LEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHRDPDMLV+T      RVDVNTEVG
Sbjct: 448  LEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVG 507

Query: 2205 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGF 2026
            VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQ LQQRESP+EGGWH+LVAKG+
Sbjct: 508  VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQTLQQRESPEEGGWHDLVAKGY 567

Query: 2025 IEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 1846
            IEY+D      TMISMTINDLV ARLNP+EAYSDTYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 568  IEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 627

Query: 1845 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1666
            QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 628  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 687

Query: 1665 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNT 1486
            AIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR +T
Sbjct: 688  AIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRAST 747

Query: 1485 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTSLRHS 1306
            MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ DDAQGQA+RYT++DHSTSLRHS
Sbjct: 748  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHS 807

Query: 1305 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 1126
            ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE
Sbjct: 808  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 867

Query: 1125 GITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 946
            GITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY
Sbjct: 868  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 927

Query: 945  QMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 766
            QMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 928  QMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 987

Query: 765  DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 586
            DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC
Sbjct: 988  DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 1047

Query: 585  KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 487
            KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1048 KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1080



 Score =  479 bits (1233), Expect = e-132
 Identities = 241/264 (91%), Positives = 250/264 (94%)
 Frame = -1

Query: 3677 MMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIRKGHDGEEVTETQDFTKVFIGKV 3498
            MMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVI+KGHDGEEVTETQDFTKVFIGKV
Sbjct: 1    MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKV 60

Query: 3497 PIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 3318
            PIMLRSSYCTLYQNSEKDLTELGECP DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ
Sbjct: 61   PIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 120

Query: 3317 PNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVF 3138
            PNKYA+VAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVF
Sbjct: 121  PNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVF 180

Query: 3137 RALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRE 2958
            RALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTRE
Sbjct: 181  RALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRE 240

Query: 2957 KRIKYAXXXXXKLIILGISFTGFC 2886
            KRIKYA     K ++  +    +C
Sbjct: 241  KRIKYAKEILQKEMLPHVGIGEYC 264


>ref|XP_009605280.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X1
            [Nicotiana tomentosiformis]
          Length = 1191

 Score = 1592 bits (4123), Expect = 0.0
 Identities = 781/813 (96%), Positives = 796/813 (97%)
 Frame = -3

Query: 2925 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2746
            KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ
Sbjct: 365  KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 424

Query: 2745 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2566
            KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 425  KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 484

Query: 2565 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 2386
            LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI
Sbjct: 485  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 544

Query: 2385 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVG 2206
            LEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHRDPDMLV+T      RVDVNTEVG
Sbjct: 545  LEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVG 604

Query: 2205 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGF 2026
            VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQ LQQRESP+EGGWH+LVAKG+
Sbjct: 605  VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQTLQQRESPEEGGWHDLVAKGY 664

Query: 2025 IEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 1846
            IEY+D      TMISMTINDLV ARLNP+EAYSDTYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 665  IEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 724

Query: 1845 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1666
            QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 725  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 784

Query: 1665 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNT 1486
            AIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR +T
Sbjct: 785  AIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRAST 844

Query: 1485 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTSLRHS 1306
            MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ DDAQGQA+RYT++DHSTSLRHS
Sbjct: 845  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHS 904

Query: 1305 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 1126
            ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE
Sbjct: 905  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 964

Query: 1125 GITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 946
            GITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY
Sbjct: 965  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1024

Query: 945  QMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 766
            QMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 1025 QMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1084

Query: 765  DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 586
            DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC
Sbjct: 1085 DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 1144

Query: 585  KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 487
            KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1145 KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1177



 Score =  632 bits (1630), Expect = e-178
 Identities = 318/344 (92%), Positives = 328/344 (95%)
 Frame = -1

Query: 3917 EEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 3738
            EEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ
Sbjct: 18   EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 77

Query: 3737 PDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIRKG 3558
             DFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVI+KG
Sbjct: 78   SDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 137

Query: 3557 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 3378
            HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFIINGSEK
Sbjct: 138  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEK 197

Query: 3377 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSG 3198
            VLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSG
Sbjct: 198  VLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 257

Query: 3197 QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQN 3018
            QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQN
Sbjct: 258  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQN 317

Query: 3017 QQVALDYIGKRGSTVGVTREKRIKYAXXXXXKLIILGISFTGFC 2886
            QQVALDYIGKRG+TVGVTREKRIKYA     K ++  +    +C
Sbjct: 318  QQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGIGEYC 361


>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 1194

 Score = 1591 bits (4120), Expect = 0.0
 Identities = 781/813 (96%), Positives = 795/813 (97%)
 Frame = -3

Query: 2925 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2746
            KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQ
Sbjct: 368  KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQ 427

Query: 2745 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2566
            KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 428  KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 487

Query: 2565 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 2386
            LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI
Sbjct: 488  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 547

Query: 2385 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVG 2206
            LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKT      RVDVNTEVG
Sbjct: 548  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVG 607

Query: 2205 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGF 2026
            VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDI ALQQRES +EGGWH+LVAKGF
Sbjct: 608  VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGF 667

Query: 2025 IEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 1846
            IEY+D      TMISMTI+DLV AR+NP+EAYSDTYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 668  IEYIDTEEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 727

Query: 1845 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1666
            QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 728  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 787

Query: 1665 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNT 1486
            AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR NT
Sbjct: 788  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANT 847

Query: 1485 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTSLRHS 1306
            MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIA ++AQGQ+ARYT+RDHS SLRHS
Sbjct: 848  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDHSISLRHS 907

Query: 1305 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 1126
            ETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE
Sbjct: 908  ETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 967

Query: 1125 GITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 946
            GITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY
Sbjct: 968  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1027

Query: 945  QMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 766
            QMRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 1028 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1087

Query: 765  DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 586
            DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC
Sbjct: 1088 DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 1147

Query: 585  KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 487
            KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1148 KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180



 Score =  636 bits (1641), Expect = e-179
 Identities = 319/344 (92%), Positives = 330/344 (95%)
 Frame = -1

Query: 3917 EEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 3738
            +EITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ
Sbjct: 21   DEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 80

Query: 3737 PDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIRKG 3558
             DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVI+KG
Sbjct: 81   SDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 140

Query: 3557 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 3378
            HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK
Sbjct: 141  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 200

Query: 3377 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSG 3198
            VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSG
Sbjct: 201  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 260

Query: 3197 QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQN 3018
            QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPSLEEAFVIQN
Sbjct: 261  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQN 320

Query: 3017 QQVALDYIGKRGSTVGVTREKRIKYAXXXXXKLIILGISFTGFC 2886
            QQVALDYIGKRG+TVGVT+EKRIKYA     K ++  +    +C
Sbjct: 321  QQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYC 364


>ref|XP_009765276.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X2
            [Nicotiana sylvestris]
          Length = 1094

 Score = 1590 bits (4118), Expect = 0.0
 Identities = 780/813 (95%), Positives = 796/813 (97%)
 Frame = -3

Query: 2925 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2746
            KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ
Sbjct: 268  KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 327

Query: 2745 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2566
            KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 328  KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 387

Query: 2565 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 2386
            LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI
Sbjct: 388  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 447

Query: 2385 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVG 2206
            LEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHRDPDMLV+T      RVDVNTEVG
Sbjct: 448  LEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVG 507

Query: 2205 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGF 2026
            VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQ LQQRESP+EGGWH+LVAKG+
Sbjct: 508  VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQTLQQRESPEEGGWHDLVAKGY 567

Query: 2025 IEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 1846
            IEY+D      TMISMTINDLV ARLNP+EAYSDTYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 568  IEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 627

Query: 1845 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1666
            QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 628  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 687

Query: 1665 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNT 1486
            AIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR +T
Sbjct: 688  AIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRAST 747

Query: 1485 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTSLRHS 1306
            MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ DDAQGQA+RYT++DHSTSLRHS
Sbjct: 748  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHS 807

Query: 1305 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 1126
            ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE
Sbjct: 808  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 867

Query: 1125 GITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 946
            GITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY
Sbjct: 868  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 927

Query: 945  QMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 766
            QMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 928  QMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 987

Query: 765  DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 586
            DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKK+SFECRGC
Sbjct: 988  DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKSSFECRGC 1047

Query: 585  KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 487
            KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1048 KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1080



 Score =  479 bits (1233), Expect = e-132
 Identities = 241/264 (91%), Positives = 250/264 (94%)
 Frame = -1

Query: 3677 MMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIRKGHDGEEVTETQDFTKVFIGKV 3498
            MMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVI+KGHDGEEVTETQDFTKVFIGKV
Sbjct: 1    MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKV 60

Query: 3497 PIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 3318
            PIMLRSSYCTLYQNSEKDLTELGECP DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ
Sbjct: 61   PIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 120

Query: 3317 PNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVF 3138
            PNKYA+VAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVF
Sbjct: 121  PNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVF 180

Query: 3137 RALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRE 2958
            RALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTRE
Sbjct: 181  RALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRE 240

Query: 2957 KRIKYAXXXXXKLIILGISFTGFC 2886
            KRIKYA     K ++  +    +C
Sbjct: 241  KRIKYAKEILQKEMLPHVGIGEYC 264


>ref|XP_009765275.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X1
            [Nicotiana sylvestris]
          Length = 1191

 Score = 1590 bits (4118), Expect = 0.0
 Identities = 780/813 (95%), Positives = 796/813 (97%)
 Frame = -3

Query: 2925 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2746
            KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ
Sbjct: 365  KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 424

Query: 2745 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2566
            KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 425  KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 484

Query: 2565 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 2386
            LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI
Sbjct: 485  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 544

Query: 2385 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVG 2206
            LEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHRDPDMLV+T      RVDVNTEVG
Sbjct: 545  LEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVG 604

Query: 2205 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGF 2026
            VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQ LQQRESP+EGGWH+LVAKG+
Sbjct: 605  VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQTLQQRESPEEGGWHDLVAKGY 664

Query: 2025 IEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 1846
            IEY+D      TMISMTINDLV ARLNP+EAYSDTYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 665  IEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 724

Query: 1845 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1666
            QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 725  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 784

Query: 1665 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNT 1486
            AIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR +T
Sbjct: 785  AIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRAST 844

Query: 1485 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTSLRHS 1306
            MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ DDAQGQA+RYT++DHSTSLRHS
Sbjct: 845  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHS 904

Query: 1305 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 1126
            ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE
Sbjct: 905  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 964

Query: 1125 GITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 946
            GITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY
Sbjct: 965  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1024

Query: 945  QMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 766
            QMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 1025 QMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1084

Query: 765  DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 586
            DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKK+SFECRGC
Sbjct: 1085 DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKSSFECRGC 1144

Query: 585  KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 487
            KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1145 KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1177



 Score =  632 bits (1630), Expect = e-178
 Identities = 318/344 (92%), Positives = 328/344 (95%)
 Frame = -1

Query: 3917 EEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 3738
            EEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ
Sbjct: 18   EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 77

Query: 3737 PDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIRKG 3558
             DFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVI+KG
Sbjct: 78   SDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 137

Query: 3557 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 3378
            HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFIINGSEK
Sbjct: 138  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEK 197

Query: 3377 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSG 3198
            VLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSG
Sbjct: 198  VLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 257

Query: 3197 QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQN 3018
            QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQN
Sbjct: 258  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQN 317

Query: 3017 QQVALDYIGKRGSTVGVTREKRIKYAXXXXXKLIILGISFTGFC 2886
            QQVALDYIGKRG+TVGVTREKRIKYA     K ++  +    +C
Sbjct: 318  QQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGIGEYC 361


>ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Citrus
            sinensis]
          Length = 1195

 Score = 1590 bits (4118), Expect = 0.0
 Identities = 780/813 (95%), Positives = 796/813 (97%)
 Frame = -3

Query: 2925 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2746
            KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ
Sbjct: 368  KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 427

Query: 2745 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2566
            KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 428  KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 487

Query: 2565 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 2386
            LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI
Sbjct: 488  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 547

Query: 2385 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVG 2206
            LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDP+MLVKT      RVDVNTEVG
Sbjct: 548  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVG 607

Query: 2205 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGF 2026
            VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRESP++GGWH+LVAKGF
Sbjct: 608  VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGF 667

Query: 2025 IEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 1846
            IEY+D      TMISMTINDLV ARL+P+EAY+DTYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 668  IEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHN 727

Query: 1845 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1666
            QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 728  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 787

Query: 1665 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNT 1486
            AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NT
Sbjct: 788  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 847

Query: 1485 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTSLRHS 1306
            MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ D+AQGQA+RYT+RDHS SLRHS
Sbjct: 848  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHS 907

Query: 1305 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 1126
            ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE
Sbjct: 908  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 967

Query: 1125 GITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 946
            GITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY
Sbjct: 968  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1027

Query: 945  QMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 766
            QMRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 1028 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1087

Query: 765  DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 586
            DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGC
Sbjct: 1088 DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGC 1147

Query: 585  KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 487
            KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1148 KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180



 Score =  635 bits (1637), Expect = e-178
 Identities = 320/344 (93%), Positives = 328/344 (95%)
 Frame = -1

Query: 3917 EEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 3738
            EEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG Q
Sbjct: 21   EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQ 80

Query: 3737 PDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIRKG 3558
             DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVI+KG
Sbjct: 81   SDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 140

Query: 3557 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 3378
            HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK
Sbjct: 141  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 200

Query: 3377 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSG 3198
            VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSG
Sbjct: 201  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 260

Query: 3197 QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQN 3018
            QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQN
Sbjct: 261  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQN 320

Query: 3017 QQVALDYIGKRGSTVGVTREKRIKYAXXXXXKLIILGISFTGFC 2886
            QQVALDYIGKRG+TVGVTR+KRIKYA     K ++  +    FC
Sbjct: 321  QQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364


>ref|XP_012091599.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha
            curcas]
          Length = 1193

 Score = 1590 bits (4117), Expect = 0.0
 Identities = 780/813 (95%), Positives = 795/813 (97%)
 Frame = -3

Query: 2925 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2746
            KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT+DVR+YVQ
Sbjct: 367  KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRSYVQ 426

Query: 2745 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2566
            KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 427  KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 486

Query: 2565 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 2386
            LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI
Sbjct: 487  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 546

Query: 2385 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVG 2206
            LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKT      RVDVNTEVG
Sbjct: 547  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVG 606

Query: 2205 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGF 2026
            VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDI ALQQRES +EGGWH+LVAKGF
Sbjct: 607  VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGF 666

Query: 2025 IEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 1846
            IEY+D      TMISMTI+DLV AR+NP+EAYSDTYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 667  IEYIDTEEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 726

Query: 1845 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1666
            QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 727  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 786

Query: 1665 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNT 1486
            AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR NT
Sbjct: 787  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANT 846

Query: 1485 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTSLRHS 1306
            MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIA ++AQGQ+ARYT+RDHS SLRHS
Sbjct: 847  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDHSISLRHS 906

Query: 1305 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 1126
            ETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE
Sbjct: 907  ETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 966

Query: 1125 GITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 946
            GITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY
Sbjct: 967  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1026

Query: 945  QMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 766
            QMRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 1027 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1086

Query: 765  DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 586
            DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC
Sbjct: 1087 DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 1146

Query: 585  KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 487
            KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1147 KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1179



 Score =  640 bits (1651), Expect = e-180
 Identities = 321/344 (93%), Positives = 331/344 (96%)
 Frame = -1

Query: 3917 EEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 3738
            EEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ
Sbjct: 20   EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 79

Query: 3737 PDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIRKG 3558
            PDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVI+KG
Sbjct: 80   PDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 139

Query: 3557 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 3378
            HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK
Sbjct: 140  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 199

Query: 3377 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSG 3198
            VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPS+MFVRMLSRTSAKGGSSG
Sbjct: 200  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSG 259

Query: 3197 QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQN 3018
            QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPSLEEAFVIQN
Sbjct: 260  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQN 319

Query: 3017 QQVALDYIGKRGSTVGVTREKRIKYAXXXXXKLIILGISFTGFC 2886
            QQVALDYIGKRG+TVGVTREKRIKYA     K ++  +    +C
Sbjct: 320  QQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYC 363


>gb|KDP20966.1| hypothetical protein JCGZ_21437 [Jatropha curcas]
          Length = 841

 Score = 1590 bits (4117), Expect = 0.0
 Identities = 780/813 (95%), Positives = 795/813 (97%)
 Frame = -3

Query: 2925 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2746
            KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT+DVR+YVQ
Sbjct: 15   KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRSYVQ 74

Query: 2745 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2566
            KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 75   KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 134

Query: 2565 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 2386
            LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI
Sbjct: 135  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 194

Query: 2385 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVG 2206
            LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKT      RVDVNTEVG
Sbjct: 195  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVG 254

Query: 2205 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGF 2026
            VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDI ALQQRES +EGGWH+LVAKGF
Sbjct: 255  VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGF 314

Query: 2025 IEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 1846
            IEY+D      TMISMTI+DLV AR+NP+EAYSDTYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 315  IEYIDTEEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 374

Query: 1845 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1666
            QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 375  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 434

Query: 1665 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNT 1486
            AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR NT
Sbjct: 435  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANT 494

Query: 1485 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTSLRHS 1306
            MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIA ++AQGQ+ARYT+RDHS SLRHS
Sbjct: 495  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDHSISLRHS 554

Query: 1305 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 1126
            ETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE
Sbjct: 555  ETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614

Query: 1125 GITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 946
            GITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY
Sbjct: 615  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674

Query: 945  QMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 766
            QMRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 675  QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734

Query: 765  DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 586
            DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC
Sbjct: 735  DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 794

Query: 585  KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 487
            KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 795  KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827


>gb|KDO44202.1| hypothetical protein CISIN_1g000996mg [Citrus sinensis]
          Length = 842

 Score = 1589 bits (4115), Expect = 0.0
 Identities = 779/813 (95%), Positives = 796/813 (97%)
 Frame = -3

Query: 2925 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2746
            KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ
Sbjct: 15   KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 74

Query: 2745 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2566
            KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 75   KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 134

Query: 2565 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 2386
            LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI
Sbjct: 135  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 194

Query: 2385 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVG 2206
            LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDP+MLVKT      RVDVNTEVG
Sbjct: 195  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVG 254

Query: 2205 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGF 2026
            VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRESP++GGWH+LVAKGF
Sbjct: 255  VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGF 314

Query: 2025 IEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 1846
            IEY+D      TMISMTINDLV ARL+P+EAY+DTYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 315  IEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHN 374

Query: 1845 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1666
            QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 375  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 434

Query: 1665 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNT 1486
            AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NT
Sbjct: 435  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 494

Query: 1485 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTSLRHS 1306
            MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ D+AQGQA+RYT+RDHS SLRHS
Sbjct: 495  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHS 554

Query: 1305 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 1126
            ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE
Sbjct: 555  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 614

Query: 1125 GITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 946
            GITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY
Sbjct: 615  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 674

Query: 945  QMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 766
            QMRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 675  QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 734

Query: 765  DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 586
            DGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGC
Sbjct: 735  DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGC 794

Query: 585  KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 487
            KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 795  KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 827


>gb|KDO44200.1| hypothetical protein CISIN_1g000996mg [Citrus sinensis]
          Length = 1186

 Score = 1589 bits (4115), Expect = 0.0
 Identities = 779/813 (95%), Positives = 796/813 (97%)
 Frame = -3

Query: 2925 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2746
            KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ
Sbjct: 359  KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 418

Query: 2745 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2566
            KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 419  KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 478

Query: 2565 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 2386
            LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI
Sbjct: 479  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 538

Query: 2385 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVG 2206
            LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDP+MLVKT      RVDVNTEVG
Sbjct: 539  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVG 598

Query: 2205 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGF 2026
            VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRESP++GGWH+LVAKGF
Sbjct: 599  VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGF 658

Query: 2025 IEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 1846
            IEY+D      TMISMTINDLV ARL+P+EAY+DTYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 659  IEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHN 718

Query: 1845 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1666
            QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 719  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 778

Query: 1665 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNT 1486
            AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NT
Sbjct: 779  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 838

Query: 1485 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTSLRHS 1306
            MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ D+AQGQA+RYT+RDHS SLRHS
Sbjct: 839  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHS 898

Query: 1305 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 1126
            ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE
Sbjct: 899  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 958

Query: 1125 GITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 946
            GITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY
Sbjct: 959  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1018

Query: 945  QMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 766
            QMRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 1019 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1078

Query: 765  DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 586
            DGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGC
Sbjct: 1079 DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGC 1138

Query: 585  KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 487
            KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1139 KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1171



 Score =  609 bits (1571), Expect = e-171
 Identities = 311/344 (90%), Positives = 319/344 (92%)
 Frame = -1

Query: 3917 EEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 3738
            EEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG Q
Sbjct: 21   EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQ 80

Query: 3737 PDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIRKG 3558
             DFAE         IYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVI+KG
Sbjct: 81   SDFAE---------IYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 131

Query: 3557 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 3378
            HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK
Sbjct: 132  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 191

Query: 3377 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSG 3198
            VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSG
Sbjct: 192  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 251

Query: 3197 QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQN 3018
            QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQN
Sbjct: 252  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQN 311

Query: 3017 QQVALDYIGKRGSTVGVTREKRIKYAXXXXXKLIILGISFTGFC 2886
            QQVALDYIGKRG+TVGVTR+KRIKYA     K ++  +    FC
Sbjct: 312  QQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 355


>ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citrus clementina]
            gi|557525528|gb|ESR36834.1| hypothetical protein
            CICLE_v10027701mg [Citrus clementina]
            gi|641824899|gb|KDO44201.1| hypothetical protein
            CISIN_1g000996mg [Citrus sinensis]
          Length = 1195

 Score = 1589 bits (4115), Expect = 0.0
 Identities = 779/813 (95%), Positives = 796/813 (97%)
 Frame = -3

Query: 2925 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2746
            KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ
Sbjct: 368  KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 427

Query: 2745 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2566
            KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 428  KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 487

Query: 2565 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 2386
            LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI
Sbjct: 488  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 547

Query: 2385 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVG 2206
            LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDP+MLVKT      RVDVNTEVG
Sbjct: 548  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVG 607

Query: 2205 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGF 2026
            VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRESP++GGWH+LVAKGF
Sbjct: 608  VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGF 667

Query: 2025 IEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 1846
            IEY+D      TMISMTINDLV ARL+P+EAY+DTYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 668  IEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHN 727

Query: 1845 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1666
            QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 728  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 787

Query: 1665 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNT 1486
            AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NT
Sbjct: 788  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 847

Query: 1485 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTSLRHS 1306
            MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ D+AQGQA+RYT+RDHS SLRHS
Sbjct: 848  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHS 907

Query: 1305 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 1126
            ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE
Sbjct: 908  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 967

Query: 1125 GITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 946
            GITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY
Sbjct: 968  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1027

Query: 945  QMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 766
            QMRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 1028 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1087

Query: 765  DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 586
            DGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGC
Sbjct: 1088 DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGC 1147

Query: 585  KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 487
            KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1148 KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180



 Score =  635 bits (1637), Expect = e-178
 Identities = 320/344 (93%), Positives = 328/344 (95%)
 Frame = -1

Query: 3917 EEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 3738
            EEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG Q
Sbjct: 21   EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQ 80

Query: 3737 PDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIRKG 3558
             DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVI+KG
Sbjct: 81   SDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 140

Query: 3557 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 3378
            HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK
Sbjct: 141  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 200

Query: 3377 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSG 3198
            VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSG
Sbjct: 201  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 260

Query: 3197 QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQN 3018
            QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQN
Sbjct: 261  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQN 320

Query: 3017 QQVALDYIGKRGSTVGVTREKRIKYAXXXXXKLIILGISFTGFC 2886
            QQVALDYIGKRG+TVGVTR+KRIKYA     K ++  +    FC
Sbjct: 321  QQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364


>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
            gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
            Full=DNA-directed RNA polymerase II subunit RPB2;
            Short=RNA polymerase II subunit 2; Short=RNA polymerase
            II subunit B2; AltName: Full=DNA-directed RNA polymerase
            II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
            polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score = 1589 bits (4115), Expect = 0.0
 Identities = 779/813 (95%), Positives = 794/813 (97%)
 Frame = -3

Query: 2925 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2746
            KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQ
Sbjct: 365  KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQ 424

Query: 2745 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2566
            KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 425  KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 484

Query: 2565 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 2386
            LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI
Sbjct: 485  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 544

Query: 2385 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVG 2206
            LEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHRDPDMLV+T      RVDVNTEVG
Sbjct: 545  LEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVG 604

Query: 2205 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGF 2026
            VVRDIRLKELRIYTDYGRCSRPLFIVEKQRL+IKKKDIQ LQQRESPDEGGWH+LVAKG+
Sbjct: 605  VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGY 664

Query: 2025 IEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 1846
            IEY+D      TMISMTINDLV ARLNP +AYSDTYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 665  IEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHN 724

Query: 1845 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1666
            QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 725  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 784

Query: 1665 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNT 1486
            AIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR +T
Sbjct: 785  AIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRAST 844

Query: 1485 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTSLRHS 1306
            MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ DDAQGQA+RYT++DHSTSLRHS
Sbjct: 845  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHS 904

Query: 1305 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 1126
            ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE
Sbjct: 905  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 964

Query: 1125 GITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 946
            GITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY
Sbjct: 965  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1024

Query: 945  QMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 766
            QMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 1025 QMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1084

Query: 765  DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 586
            DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC
Sbjct: 1085 DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 1144

Query: 585  KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 487
            KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1145 KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1177



 Score =  632 bits (1630), Expect = e-178
 Identities = 318/344 (92%), Positives = 328/344 (95%)
 Frame = -1

Query: 3917 EEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 3738
            EEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ
Sbjct: 18   EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 77

Query: 3737 PDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIRKG 3558
             DFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVI+KG
Sbjct: 78   SDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 137

Query: 3557 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 3378
            HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFIINGSEK
Sbjct: 138  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEK 197

Query: 3377 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSG 3198
            VLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMA+TQNRPPSTMFVRMLSRTSAKGGSSG
Sbjct: 198  VLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPSTMFVRMLSRTSAKGGSSG 257

Query: 3197 QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQN 3018
            QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQN
Sbjct: 258  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQN 317

Query: 3017 QQVALDYIGKRGSTVGVTREKRIKYAXXXXXKLIILGISFTGFC 2886
            QQVALDYIGKRG+TVGVTREKRIKYA     K ++  +    +C
Sbjct: 318  QQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYC 361


>gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1200

 Score = 1589 bits (4115), Expect = 0.0
 Identities = 777/813 (95%), Positives = 796/813 (97%)
 Frame = -3

Query: 2925 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2746
            KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQ
Sbjct: 374  KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQ 433

Query: 2745 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2566
            KCVDNGKDVNLQF IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 434  KCVDNGKDVNLQFXIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 493

Query: 2565 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 2386
            LRRL+SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI
Sbjct: 494  LRRLBSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 553

Query: 2385 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVG 2206
            LEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHR+PDMLV T      RVDVNTEVG
Sbjct: 554  LEFLEEWGTENFEEISPAVIPQATKIFVNGLWVGIHRNPDMLVSTLRRLRRRVDVNTEVG 613

Query: 2205 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGF 2026
            VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKD+QALQQRESPD+GGWHELVAKGF
Sbjct: 614  VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDVQALQQRESPDDGGWHELVAKGF 673

Query: 2025 IEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 1846
            IEY+D      TMISMTINDL+SA++NP EAYSDTYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 674  IEYIDTEEEETTMISMTINDLLSAKVNPTEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 733

Query: 1845 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1666
            QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 734  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 793

Query: 1665 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNT 1486
            AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NT
Sbjct: 794  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 853

Query: 1485 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTSLRHS 1306
            MGMRHGSYDKLDDDGLAPPGTR SGEDVIIGKTTPI+PDDAQGQAARYTKRDHSTSLRHS
Sbjct: 854  MGMRHGSYDKLDDDGLAPPGTRCSGEDVIIGKTTPISPDDAQGQAARYTKRDHSTSLRHS 913

Query: 1305 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 1126
            ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE
Sbjct: 914  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 973

Query: 1125 GITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 946
            GI+PDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY
Sbjct: 974  GISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1033

Query: 945  QMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 766
            QMRGFETMYNGHTGR+L++MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 1034 QMRGFETMYNGHTGRRLSSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1093

Query: 765  DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 586
            DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE+CGLIAIANLKKNSFECRGC
Sbjct: 1094 DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEQCGLIAIANLKKNSFECRGC 1153

Query: 585  KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 487
            KNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1154 KNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 1186



 Score =  627 bits (1617), Expect = e-176
 Identities = 316/344 (91%), Positives = 327/344 (95%)
 Frame = -1

Query: 3917 EEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 3738
            E+I+QEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG Q
Sbjct: 27   EDISQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQ 86

Query: 3737 PDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIRKG 3558
            PDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVI+KG
Sbjct: 87   PDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKG 146

Query: 3557 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 3378
            HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFIINGSEK
Sbjct: 147  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEK 206

Query: 3377 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSG 3198
            VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE QNRPPSTMFVRMLSRTSAKGGSSG
Sbjct: 207  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAEAQNRPPSTMFVRMLSRTSAKGGSSG 266

Query: 3197 QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQN 3018
            QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHIC++ +DTQMMELLRPSLEEAFVIQN
Sbjct: 267  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICFNSSDTQMMELLRPSLEEAFVIQN 326

Query: 3017 QQVALDYIGKRGSTVGVTREKRIKYAXXXXXKLIILGISFTGFC 2886
            QQVALDYIGKRGSTVGVT+EKRIKYA     K ++  +    +C
Sbjct: 327  QQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYC 370


>ref|XP_012830376.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Erythranthe
            guttatus] gi|604344639|gb|EYU43393.1| hypothetical
            protein MIMGU_mgv1a000385mg [Erythranthe guttata]
          Length = 1197

 Score = 1588 bits (4112), Expect = 0.0
 Identities = 780/814 (95%), Positives = 794/814 (97%), Gaps = 1/814 (0%)
 Frame = -3

Query: 2925 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2746
            KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQ
Sbjct: 370  KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQ 429

Query: 2745 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2566
            KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 430  KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 489

Query: 2565 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 2386
            LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI
Sbjct: 490  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 549

Query: 2385 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVG 2206
            LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR+PDMLV T      RVDVNTEVG
Sbjct: 550  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTLRRLRRRVDVNTEVG 609

Query: 2205 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGF 2026
            VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPD+GGWH+LVAKGF
Sbjct: 610  VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHDLVAKGF 669

Query: 2025 IEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 1846
            IEY+D      TMISMTINDLVSAR+NP EAYSDTYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 670  IEYIDTEEEETTMISMTINDLVSARINPGEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 729

Query: 1845 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1666
            QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 730  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 789

Query: 1665 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNT 1486
            AIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR NT
Sbjct: 790  AIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANT 849

Query: 1485 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQA-ARYTKRDHSTSLRH 1309
            MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI PD+AQGQA ARYTKRDHSTSLRH
Sbjct: 850  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPITPDEAQGQANARYTKRDHSTSLRH 909

Query: 1308 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 1129
            SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+
Sbjct: 910  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTL 969

Query: 1128 EGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 949
            EGI PDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG
Sbjct: 970  EGINPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1029

Query: 948  YQMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 769
            YQMRG+ETMYNGHTGR+LT+MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS
Sbjct: 1030 YQMRGYETMYNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1089

Query: 768  RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRG 589
            RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE+CGLIAIANLKKNSFECR 
Sbjct: 1090 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEKCGLIAIANLKKNSFECRA 1149

Query: 588  CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 487
            CKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1150 CKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 1183



 Score =  635 bits (1638), Expect = e-179
 Identities = 317/344 (92%), Positives = 330/344 (95%)
 Frame = -1

Query: 3917 EEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 3738
            EEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ
Sbjct: 23   EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 82

Query: 3737 PDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIRKG 3558
            PDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVI+KG
Sbjct: 83   PDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 142

Query: 3557 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 3378
            HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK
Sbjct: 143  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 202

Query: 3377 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSG 3198
            VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMF+RML+RTSAKGGSSG
Sbjct: 203  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFIRMLARTSAKGGSSG 262

Query: 3197 QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQN 3018
            QYIRATLPYIR+EIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEAFVIQN
Sbjct: 263  QYIRATLPYIRSEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQN 322

Query: 3017 QQVALDYIGKRGSTVGVTREKRIKYAXXXXXKLIILGISFTGFC 2886
            QQVALDYIGKRG+TVGVTR++RIKYA     K ++  +    +C
Sbjct: 323  QQVALDYIGKRGATVGVTRDRRIKYAKEILQKEMLPHVGVGEYC 366


>ref|XP_011027835.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Populus
            euphratica]
          Length = 1198

 Score = 1588 bits (4111), Expect = 0.0
 Identities = 779/813 (95%), Positives = 796/813 (97%)
 Frame = -3

Query: 2925 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2746
            KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQ
Sbjct: 372  KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQ 431

Query: 2745 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2566
            KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 432  KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 491

Query: 2565 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 2386
            LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI
Sbjct: 492  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 551

Query: 2385 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVG 2206
            LEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHRDPDMLVKT      RVDVNTEVG
Sbjct: 552  LEFLEEWGTENFEEISPAVIPQATKIFVNGGWVGIHRDPDMLVKTLRRLRRRVDVNTEVG 611

Query: 2205 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGF 2026
            VVRDIRLKELRIYTDYGRCSRPLFIVEKQ+LLI+KKDI ALQQRE+PDEGGWH+LV+KGF
Sbjct: 612  VVRDIRLKELRIYTDYGRCSRPLFIVEKQKLLIRKKDIHALQQRETPDEGGWHDLVSKGF 671

Query: 2025 IEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 1846
            IEY+D      TMISMTI+DLV ARLNP+EAYSDTYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 672  IEYIDTEEEETTMISMTIHDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 731

Query: 1845 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1666
            QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 732  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 791

Query: 1665 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNT 1486
            AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NT
Sbjct: 792  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 851

Query: 1485 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTSLRHS 1306
            MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIA ++AQGQ+ARYT+RDHS SLRHS
Sbjct: 852  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDHSISLRHS 911

Query: 1305 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 1126
            ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE
Sbjct: 912  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 971

Query: 1125 GITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 946
            GITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY
Sbjct: 972  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1031

Query: 945  QMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 766
            QMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 1032 QMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1091

Query: 765  DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 586
            DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC
Sbjct: 1092 DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 1151

Query: 585  KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 487
            KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1152 KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1184



 Score =  639 bits (1649), Expect = e-180
 Identities = 322/344 (93%), Positives = 329/344 (95%)
 Frame = -1

Query: 3917 EEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 3738
            EEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ
Sbjct: 25   EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 84

Query: 3737 PDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIRKG 3558
             DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVI+KG
Sbjct: 85   SDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 144

Query: 3557 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 3378
            HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK
Sbjct: 145  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 204

Query: 3377 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSG 3198
            VLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSG
Sbjct: 205  VLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 264

Query: 3197 QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQN 3018
            QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQN
Sbjct: 265  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQN 324

Query: 3017 QQVALDYIGKRGSTVGVTREKRIKYAXXXXXKLIILGISFTGFC 2886
            QQVALDYIGKRG+TVGVTREKRIKYA     K ++  +    FC
Sbjct: 325  QQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFC 368


>ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Solanum
            tuberosum]
          Length = 1191

 Score = 1587 bits (4110), Expect = 0.0
 Identities = 778/813 (95%), Positives = 793/813 (97%)
 Frame = -3

Query: 2925 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2746
            KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQ
Sbjct: 365  KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQ 424

Query: 2745 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2566
            KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 425  KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 484

Query: 2565 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 2386
            LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI
Sbjct: 485  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 544

Query: 2385 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVG 2206
            LEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHRDPDMLV+T      RVDVNTEVG
Sbjct: 545  LEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVG 604

Query: 2205 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGF 2026
            VVRDIRLKELRIYTDYGRCSRPLFIVEKQRL+IKKKDIQ LQQRESPDEGGWH+LVAKG+
Sbjct: 605  VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGY 664

Query: 2025 IEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 1846
            IEY+D      TMISMTINDLV ARLNP +AYSDTYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 665  IEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHN 724

Query: 1845 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1666
            QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 725  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 784

Query: 1665 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNT 1486
            AIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR  T
Sbjct: 785  AIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRATT 844

Query: 1485 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTSLRHS 1306
            MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ DDAQGQA+RYT++DHSTSLRHS
Sbjct: 845  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHS 904

Query: 1305 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 1126
            ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE
Sbjct: 905  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 964

Query: 1125 GITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 946
            GI+PDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY
Sbjct: 965  GISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1024

Query: 945  QMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 766
            QMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 1025 QMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1084

Query: 765  DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 586
            DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC
Sbjct: 1085 DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 1144

Query: 585  KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 487
            KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1145 KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1177



 Score =  632 bits (1629), Expect = e-178
 Identities = 318/344 (92%), Positives = 328/344 (95%)
 Frame = -1

Query: 3917 EEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 3738
            EEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ
Sbjct: 18   EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 77

Query: 3737 PDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIRKG 3558
             DFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVI+KG
Sbjct: 78   SDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 137

Query: 3557 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 3378
            HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFIINGSEK
Sbjct: 138  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEK 197

Query: 3377 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSG 3198
            VLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSG
Sbjct: 198  VLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 257

Query: 3197 QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQN 3018
            QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQN
Sbjct: 258  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQN 317

Query: 3017 QQVALDYIGKRGSTVGVTREKRIKYAXXXXXKLIILGISFTGFC 2886
            QQVALDYIGKRG+TVGVTREKRIKYA     K ++  +    +C
Sbjct: 318  QQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYC 361


>ref|XP_010108197.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
            gi|587931023|gb|EXC18122.1| DNA-directed RNA polymerase
            II subunit [Morus notabilis]
          Length = 1193

 Score = 1583 bits (4098), Expect = 0.0
 Identities = 777/814 (95%), Positives = 794/814 (97%), Gaps = 1/814 (0%)
 Frame = -3

Query: 2925 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2746
            KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQ
Sbjct: 366  KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQ 425

Query: 2745 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2566
            KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 426  KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 485

Query: 2565 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 2386
            LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI
Sbjct: 486  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 545

Query: 2385 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVG 2206
            LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKT      RVDVNTEVG
Sbjct: 546  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVG 605

Query: 2205 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGF 2026
            VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI+ALQQRE+P+E GWH+LV+ GF
Sbjct: 606  VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIRALQQRETPEEAGWHDLVSNGF 665

Query: 2025 IEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 1846
            IEY+D      TMISMTINDLV ARLNP+EAYS+TYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 666  IEYIDTEEEETTMISMTINDLVQARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHN 725

Query: 1845 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1666
            QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 726  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 785

Query: 1665 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNT 1486
            AIVAIACYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NT
Sbjct: 786  AIVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 845

Query: 1485 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAA-RYTKRDHSTSLRH 1309
            MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIA D+AQGQAA RYT+RDHS SLRH
Sbjct: 846  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDEAQGQAASRYTRRDHSISLRH 905

Query: 1308 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 1129
            SE G+VDQVLLTTNADGLRFVKVRVRS+RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV
Sbjct: 906  SENGIVDQVLLTTNADGLRFVKVRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 965

Query: 1128 EGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 949
            EGITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCG
Sbjct: 966  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1025

Query: 948  YQMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 769
            YQMRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS
Sbjct: 1026 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1085

Query: 768  RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRG 589
            RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRG
Sbjct: 1086 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRG 1145

Query: 588  CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 487
            CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1146 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1179



 Score =  634 bits (1634), Expect = e-178
 Identities = 318/344 (92%), Positives = 328/344 (95%)
 Frame = -1

Query: 3917 EEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 3738
            EEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ
Sbjct: 19   EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 78

Query: 3737 PDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIRKG 3558
             DF ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVI+KG
Sbjct: 79   SDFVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 138

Query: 3557 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 3378
            HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK
Sbjct: 139  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 198

Query: 3377 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSG 3198
            VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTS+KGGSSG
Sbjct: 199  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSG 258

Query: 3197 QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQN 3018
            QYIRATLPYIR EIPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPSLEEAFVIQN
Sbjct: 259  QYIRATLPYIRAEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQN 318

Query: 3017 QQVALDYIGKRGSTVGVTREKRIKYAXXXXXKLIILGISFTGFC 2886
            QQVALDYIGKRG+TVGVT+EKRIKYA     K ++  +    FC
Sbjct: 319  QQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGTGEFC 362


>ref|XP_012449722.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Gossypium
            raimondii] gi|823234175|ref|XP_012449723.1| PREDICTED:
            DNA-directed RNA polymerase II subunit RPB2 [Gossypium
            raimondii] gi|728847618|gb|KHG27061.1| DNA-directed RNA
            polymerase II subunit RPB2 [Gossypium arboreum]
            gi|763801668|gb|KJB68623.1| hypothetical protein
            B456_010G255400 [Gossypium raimondii]
            gi|763801669|gb|KJB68624.1| hypothetical protein
            B456_010G255400 [Gossypium raimondii]
          Length = 1189

 Score = 1583 bits (4098), Expect = 0.0
 Identities = 774/813 (95%), Positives = 794/813 (97%)
 Frame = -3

Query: 2925 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2746
            KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQ
Sbjct: 365  KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQ 424

Query: 2745 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2566
            KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 425  KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 484

Query: 2565 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 2386
            LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI
Sbjct: 485  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 544

Query: 2385 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTXXXXXXRVDVNTEVG 2206
            LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG+HR+PDMLV T      RVDVNTEVG
Sbjct: 545  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVNTEVG 604

Query: 2205 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDEGGWHELVAKGF 2026
            VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDI ALQQRE+P++GGWH+LVAKGF
Sbjct: 605  VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRETPEDGGWHDLVAKGF 664

Query: 2025 IEYVDXXXXXXTMISMTINDLVSARLNPKEAYSDTYTHCEIHPSLILGVCASIIPFPDHN 1846
            IEY+D      TMISMTINDLV AR+NP+EAYS+TYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 665  IEYIDTEEEETTMISMTINDLVQARINPEEAYSETYTHCEIHPSLILGVCASIIPFPDHN 724

Query: 1845 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1666
            QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 725  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 784

Query: 1665 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNT 1486
            AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR  T
Sbjct: 785  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRATT 844

Query: 1485 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDDAQGQAARYTKRDHSTSLRHS 1306
            MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ ++AQGQA+RY+KRDHS SLRHS
Sbjct: 845  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQASRYSKRDHSISLRHS 904

Query: 1305 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 1126
            ETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE
Sbjct: 905  ETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 964

Query: 1125 GITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 946
            GITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGY
Sbjct: 965  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGY 1024

Query: 945  QMRGFETMYNGHTGRQLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 766
            QMRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 1025 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1084

Query: 765  DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 586
            DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC
Sbjct: 1085 DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 1144

Query: 585  KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 487
            KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1145 KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1177



 Score =  640 bits (1650), Expect = e-180
 Identities = 322/344 (93%), Positives = 330/344 (95%)
 Frame = -1

Query: 3917 EEITQEDAWAVISAYFELKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 3738
            EEITQEDAWAVISAYFE KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ
Sbjct: 18   EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ 77

Query: 3737 PDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIRKG 3558
             DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVI+KG
Sbjct: 78   SDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 137

Query: 3557 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 3378
            HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK
Sbjct: 138  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 197

Query: 3377 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSG 3198
            VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSG
Sbjct: 198  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 257

Query: 3197 QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQN 3018
            QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPSLEEAFVIQN
Sbjct: 258  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQN 317

Query: 3017 QQVALDYIGKRGSTVGVTREKRIKYAXXXXXKLIILGISFTGFC 2886
            QQVALDYIGKRG+TVGVTREKRIKYA     K ++  +    FC
Sbjct: 318  QQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFC 361