BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia22_contig00005196
         (2971 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011098529.1| PREDICTED: chloroplastic group IIA intron sp...   571   0.0  
ref|XP_012849118.1| PREDICTED: chloroplastic group IIA intron sp...   518   0.0  
emb|CDP02160.1| unnamed protein product [Coffea canephora]            493   0.0  
ref|XP_009762860.1| PREDICTED: chloroplastic group IIA intron sp...   468   0.0  
ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron sp...   468   0.0  
emb|CBI34982.3| unnamed protein product [Vitis vinifera]              468   0.0  
ref|XP_009614930.1| PREDICTED: chloroplastic group IIA intron sp...   469   0.0  
ref|XP_010660973.1| PREDICTED: chloroplastic group IIA intron sp...   468   0.0  
ref|XP_006338518.1| PREDICTED: chloroplastic group IIA intron sp...   473   0.0  
ref|XP_004232267.1| PREDICTED: chloroplastic group IIA intron sp...   464   0.0  
ref|XP_006338519.1| PREDICTED: chloroplastic group IIA intron sp...   473   0.0  
ref|XP_008341495.1| PREDICTED: LOW QUALITY PROTEIN: chloroplasti...   449   0.0  
ref|XP_008230670.1| PREDICTED: chloroplastic group IIA intron sp...   447   0.0  
ref|XP_007217083.1| hypothetical protein PRUPE_ppa000515mg [Prun...   451   0.0  
ref|XP_008230671.1| PREDICTED: chloroplastic group IIA intron sp...   447   0.0  
ref|XP_007031356.1| CRM family member 2, putative isoform 2 [The...   449   0.0  
ref|XP_012082331.1| PREDICTED: chloroplastic group IIA intron sp...   435   0.0  
ref|XP_012483758.1| PREDICTED: chloroplastic group IIA intron sp...   434   0.0  
gb|KHG23499.1| Chloroplastic group IIA intron splicing facilitat...   435   0.0  
ref|XP_012483760.1| PREDICTED: chloroplastic group IIA intron sp...   434   0.0  

>ref|XP_011098529.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Sesamum indicum]
          Length = 1054

 Score =  571 bits (1472), Expect(2) = 0.0
 Identities = 326/552 (59%), Positives = 384/552 (69%), Gaps = 7/552 (1%)
 Frame = -1

Query: 1636 GRNKKLQGLAASIVKLWEKCEIAKIAIKRGVQNTNSEIMAEELKWLTGGTLLSRDKEFIV 1457
            GRN+KLQGLAA+IVKLWEKCEIAKIAIKRGVQNTNSE+MAEELKWLTGGTLLSRD EFI 
Sbjct: 413  GRNRKLQGLAAAIVKLWEKCEIAKIAIKRGVQNTNSELMAEELKWLTGGTLLSRDNEFIA 472

Query: 1456 FYRGKDFLPAAVSSAIEERRKYGINGAKT--GKDHDLNEKEHKHGTLEYAPQNEHHEASD 1283
            FYRGKDFLPAAVSSAIEERRKYGI+ +KT  G    L+ KE KHGT EYA + EH E  +
Sbjct: 473  FYRGKDFLPAAVSSAIEERRKYGIDMSKTRTGNSPILDAKEIKHGTKEYAAEAEHDEECN 532

Query: 1282 KKLKLHSEERKLRHAESAIKRTSSKLSMXXXXXXXXXXXXXXXXXXEIPQQLEIDKEGIT 1103
            +K    SEERKL+ +++A++RTS+KLSM                  E+PQ  EIDKEGIT
Sbjct: 533  QK----SEERKLKFSQAAMERTSTKLSMALAKKARAEKLLAELEKEEMPQPPEIDKEGIT 588

Query: 1102 EEERYMLRKVGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMIGSRTIEEVHGIAR 923
            EEERYMLRKVGLRMK FLLLGRRGVFDGT+ENMHLHWKYRELVKV IG R I+E+H IAR
Sbjct: 589  EEERYMLRKVGLRMKPFLLLGRRGVFDGTIENMHLHWKYRELVKVCIGRRNIKEIHEIAR 648

Query: 922  TLEAESGGILVAVERVSKGYAIIVYRGKNYKRPASLRPQTLLSKREAMKRSIEAQRRESL 743
            TLEAESGGILVAVERVSKGYAIIVYRGKNY RPASLRPQTLLSKREAM+RS+EAQRRESL
Sbjct: 649  TLEAESGGILVAVERVSKGYAIIVYRGKNYTRPASLRPQTLLSKREAMRRSLEAQRRESL 708

Query: 742  KLHVLKLTRNIDELKLRLAEDKDSNDIHMAKDLEHGVVKEQEMNKIYITEDATSYRNSRI 563
            KLHVLKL+RNIDE+KL++A++ D ND+ + KDLE G V ++     Y             
Sbjct: 709  KLHVLKLSRNIDEMKLQMAKEGDPNDMQLTKDLELGFVDQKNSKNHY------------- 755

Query: 562  DHQSYPXXVAELEMNKIYITEDATSYRNPRIDHQSYPTGHSTEEARGSHGADVTHMDTKG 383
                                +D   +++P   HQSY  G    EAR S G D T  D + 
Sbjct: 756  -------------------NKDKALHQDPESAHQSY-FGELANEARDSPGTDDTSKDPED 795

Query: 382  SMDTAMDS--VHQQDLGENISLQSEVKGENVFDTSKADLQVKSVLKETKGSLDIKGKDGT 209
             M TA DS  + QQD    +SL S VKG  +F+T++ +LQ +S+ +ETKG L I  + G 
Sbjct: 796  LMHTAKDSEDIVQQDSSGYVSLHSAVKGNYLFETTEEELQPRSLPQETKGLLSINEQSGH 855

Query: 208  VKI---FRSPDQTSSSATAYVQPHFCDNKAMTSNVGSREAMLEPSVDKSRERDSPGTPFR 38
            +++    R  D+TSSS T  +Q H     + T   G +   LEPSV K+    +   PFR
Sbjct: 856  IELSSSLRFQDRTSSSTTTCIQSHTGGRDSSTG--GFQNVELEPSVKKALSEATAAMPFR 913

Query: 37   ARRLSNRERLLL 2
            A +LSNRERLLL
Sbjct: 914  ALQLSNRERLLL 925



 Score =  509 bits (1312), Expect(2) = 0.0
 Identities = 274/422 (64%), Positives = 310/422 (73%), Gaps = 2/422 (0%)
 Frame = -2

Query: 2895 MLNPLCSSSRSRNQEFSYLIPSRTLLNXXXXXXXXXXXXPRLHFKSLLNQTSXXXXXXXX 2716
            ML  LC+  R     FS+L PS TLL                 FK    + S        
Sbjct: 1    MLVSLCNCDR----HFSFL-PSTTLLKPSFGIPSYHYP--NFLFKPFRRRASISVAASGA 53

Query: 2715 ADSGTLPQSAIQRIAEKLRSLGYVEEDK-DNPEKGINYNGSSPGEIFVPLPTKLPKYRVG 2539
             DS TLP SAI RIAEKLRSLGYVEE   DN ++ +    +SPGEIF+P PT+LPK+RVG
Sbjct: 54   -DSQTLPASAIHRIAEKLRSLGYVEESSNDNDDETLPPGPNSPGEIFIPFPTRLPKFRVG 112

Query: 2538 HTLDQSWSTPENPVPVPGSGNAIQSFHELRHGVFKEKEEDRLRRRGLENGGKAPSLAXXX 2359
            HTLD SWSTPENP+P PGSGNAI+ FHELR GV +E+E++R+R+R       APSLA   
Sbjct: 113  HTLDPSWSTPENPIPDPGSGNAIRRFHELRRGVLEEEEKERIRKRREGKKESAPSLAELT 172

Query: 2358 XXXXXXXXXRSIGIGLKKKLNVGKSGITEGIVNGIHERWRHSELVKIKCEDICRLNMKRT 2179
                     RSIGIGLKK+L  GK+GITEGIVNGIHERWR SELVKI CEDICRLNMKRT
Sbjct: 173  LPKDELRRLRSIGIGLKKELKAGKAGITEGIVNGIHERWRRSELVKITCEDICRLNMKRT 232

Query: 2178 HNLLERKTGGLVIWRSGSNIILYRGADYKYPYFFTDSNSTNDASNEASPDLDMDDGVHDG 1999
            H LLERKTGGLVIWRSGSNIILYRG+DYKYPYF TD  S ND+S+E SP++D D G+   
Sbjct: 233  HELLERKTGGLVIWRSGSNIILYRGSDYKYPYFLTDELS-NDSSSEESPNIDKDQGIVGK 291

Query: 1998 SDKLSG-THVVKSPGPNALIGISHPHLVKGVGLPNRVRFQLPGEAQLAEEADMLLEGLGP 1822
            +D+ S  T  V+S   N+   ISH  L++GVGLPNRVRFQLPGEA+LA+E D LLEGLGP
Sbjct: 292  TDEQSPVTDAVESRRLNSGTHISHLPLIQGVGLPNRVRFQLPGEAELADEVDTLLEGLGP 351

Query: 1821 RFIDWWGYDPLPVDADLLPAIVPGYKRPFRLLPYGVKFKLTNDEMTTLKRLGRPLPCHFA 1642
            RF DWWG DPLPVDADLLPA+VPGYKRPFRLLPYGVK KLTNDEMTTL+RLGRPLPCHFA
Sbjct: 352  RFSDWWGCDPLPVDADLLPAVVPGYKRPFRLLPYGVKPKLTNDEMTTLRRLGRPLPCHFA 411

Query: 1641 LG 1636
            LG
Sbjct: 412  LG 413


>ref|XP_012849118.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Erythranthe guttatus]
            gi|604346236|gb|EYU44699.1| hypothetical protein
            MIMGU_mgv1a000630mg [Erythranthe guttata]
          Length = 1040

 Score =  518 bits (1334), Expect(2) = 0.0
 Identities = 302/552 (54%), Positives = 368/552 (66%), Gaps = 7/552 (1%)
 Frame = -1

Query: 1636 GRNKKLQGLAASIVKLWEKCEIAKIAIKRGVQNTNSEIMAEELKWLTGGTLLSRDKEFIV 1457
            GRN+K QGLAA IVKLWEKCEIAKIA+KRGVQNTNS +MAEELKWLTGGTLLSRD+EFIV
Sbjct: 413  GRNRKHQGLAACIVKLWEKCEIAKIAVKRGVQNTNSVLMAEELKWLTGGTLLSRDREFIV 472

Query: 1456 FYRGKDFLPAAVSSAIEERRKYGINGAKT--GKDHDLNEKEHKHGTLEYAPQNEHHEASD 1283
             YRGKDFLPAAVSSAI+ERRKY I+ +KT  G   +LNEKEH+HGT EYA + E H  +D
Sbjct: 473  LYRGKDFLPAAVSSAIQERRKYEIDASKTRAGNLSNLNEKEHRHGTKEYATEAEQHNEAD 532

Query: 1282 KKLKLHSEERKLRHAESAIKRTSSKLSMXXXXXXXXXXXXXXXXXXEIPQQLEIDKEGIT 1103
            + L++  E+R++R +ESA++RTS+KLSM                  E PQ  E DKEGIT
Sbjct: 533  QNLQVR-EKRRVRFSESAMERTSTKLSMALEKKARAEKLLEELAKEESPQPPETDKEGIT 591

Query: 1102 EEERYMLRKVGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMIGSRTIEEVHGIAR 923
            EEERYMLRKVGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKV IG+R+IEEVHG+AR
Sbjct: 592  EEERYMLRKVGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVCIGNRSIEEVHGVAR 651

Query: 922  TLEAESGGILVAVERVSKGYAIIVYRGKNYKRPASLRPQTLLSKREAMKRSIEAQRRESL 743
            TLEAESGGILVAVERVSKG+ IIVYRGKNY RPASLRPQTLLSKREAMKRS+EAQRRESL
Sbjct: 652  TLEAESGGILVAVERVSKGFDIIVYRGKNYTRPASLRPQTLLSKREAMKRSLEAQRRESL 711

Query: 742  KLHVLKLTRNIDELKLRLAEDKDSNDIHMAKDLEHGVVKEQEMNKIYITEDATSYRNSRI 563
            KLHVLKL++NIDELKL++A                   K++  N+ ++TED         
Sbjct: 712  KLHVLKLSKNIDELKLKMA-------------------KDENTNRPHLTED--------- 743

Query: 562  DHQSYPXXVAELEMNKIYITEDATSYRNPRIDHQSYPTGHSTEEARGSHGADVTHMDTKG 383
                       LE+  +                            R SH  D T+ D + 
Sbjct: 744  -----------LELGFV----------------------------RESHETDATNKDPEE 764

Query: 382  SMDTAMDSVH--QQDLGENISLQSEVKGENVFDTSKADLQVKSVLKETKGSLDIKGKDGT 209
             M  + D+VH  Q+DL  ++SLQSEVK   +F+T++A++Q  S+  E     D   + G 
Sbjct: 765  PMHISEDTVHIAQKDLPGDVSLQSEVKVNYLFETTEAEVQPTSLSNEGNSFSDKNNQIGN 824

Query: 208  VKIFRSP---DQTSSSATAYVQPHFCDNKAMTSNVGSREAMLEPSVDKSRERDSPGTPFR 38
            ++  RSP   D+ +SS + Y++P     +  +   G R   +EPS  K  +      P R
Sbjct: 825  MEFVRSPRSQDRRNSSPSTYIRPQ--TGRRKSDGGGYRNVDIEPSGQKPMKERPSLMPSR 882

Query: 37   ARRLSNRERLLL 2
            + +LSN+ERLLL
Sbjct: 883  SVQLSNKERLLL 894



 Score =  511 bits (1315), Expect(2) = 0.0
 Identities = 272/424 (64%), Positives = 313/424 (73%), Gaps = 4/424 (0%)
 Frame = -2

Query: 2895 MLNPLCSSSRSRNQEFSYLIPSRTLLNXXXXXXXXXXXXPRLHFKSLLNQTSXXXXXXXX 2716
            ML PLC+     N+ FS+L PS+T+L              +  F  L  + +        
Sbjct: 1    MLVPLCNC----NRHFSFL-PSQTILKPSSQFPACHYP--KFTFNPLRRRAAICAAIEA- 52

Query: 2715 ADSGTLPQSAIQRIAEKLRSLGYVEED-KDNPEKGINYNGSSPGEIFVPLPTKLPKYRVG 2539
             D  TLPQSAI+RIAEKLRSLGYVE+   D+  +  N   +SPGEIFVPLPT LPKYR+G
Sbjct: 53   -DRQTLPQSAIKRIAEKLRSLGYVEDSGNDSASRNSNPGPNSPGEIFVPLPTHLPKYRIG 111

Query: 2538 HTLDQSWSTPENPVPVPGSGNAIQSFHELRHGVFKEKEEDRLRRRGLENGGKAPSLAXXX 2359
            HTLD SWSTPENPVP PGSGNAIQ FHELR GV +E+E++R+R+R     G +PSLA   
Sbjct: 112  HTLDPSWSTPENPVPEPGSGNAIQRFHELRRGVLEEEEKERIRKRDEGKRGNSPSLAELK 171

Query: 2358 XXXXXXXXXRSIGIGLKKKLNVGKSGITEGIVNGIHERWRHSELVKIKCEDICRLNMKRT 2179
                     RSIGIGLKKKL VGK+GITEGIVNGIHERWR +ELVKI CEDICRLNMKRT
Sbjct: 172  LPPGELRRLRSIGIGLKKKLKVGKAGITEGIVNGIHERWRRTELVKITCEDICRLNMKRT 231

Query: 2178 HNLLERKTGGLVIWRSGSNIILYRGADYKYPYFFTDSNSTNDASNEASPDLDMDDGVHDG 1999
            H LLE+KTGGLV+WRSGSNIILYRG+DYKYPYF  D NS+ND+S+E SPD+D +D   + 
Sbjct: 232  HELLEKKTGGLVVWRSGSNIILYRGSDYKYPYFMAD-NSSNDSSSEESPDMD-NDQHSNA 289

Query: 1998 SDKLSGTHVVKSPGPNAL---IGISHPHLVKGVGLPNRVRFQLPGEAQLAEEADMLLEGL 1828
             +    +  + SP  NAL     ISHP LV+GVGLP+RVRFQLPGEA++  EAD LLEGL
Sbjct: 290  LESSEESPDLGSPRTNALESNTQISHPSLVQGVGLPDRVRFQLPGEAEIVAEADSLLEGL 349

Query: 1827 GPRFIDWWGYDPLPVDADLLPAIVPGYKRPFRLLPYGVKFKLTNDEMTTLKRLGRPLPCH 1648
            GPRF DWWG DPLPVDADLLPA+VPGYKRPFRLLPYGV  KLTNDEMTTL+RLGRPLP H
Sbjct: 350  GPRFTDWWGNDPLPVDADLLPAVVPGYKRPFRLLPYGVNHKLTNDEMTTLRRLGRPLPIH 409

Query: 1647 FALG 1636
            FALG
Sbjct: 410  FALG 413


>emb|CDP02160.1| unnamed protein product [Coffea canephora]
          Length = 1034

 Score =  493 bits (1268), Expect(2) = 0.0
 Identities = 249/364 (68%), Positives = 286/364 (78%), Gaps = 5/364 (1%)
 Frame = -2

Query: 2712 DSGTLPQSAIQRIAEKLRSLGYVEEDKDN--PEKGINYNGSSPGEIFVPLPTKLPKYRVG 2539
            D+ TLPQSAIQRIAEKLR LGYVE+DKD    E  +  NG SPGEIFVPLP++LPKYRVG
Sbjct: 88   DTETLPQSAIQRIAEKLRGLGYVEDDKDENKDEDKLPKNGPSPGEIFVPLPSQLPKYRVG 147

Query: 2538 HTLDQSWSTPENPVPVPGSGNAIQSFHELRHGVFKEKEEDRLRRRGLENGGKAPSLAXXX 2359
            HTLD SWSTP+NPVP+PGSGNAIQ +H+LR GV KE+ E+R +R  +      P+LA   
Sbjct: 148  HTLDPSWSTPQNPVPLPGSGNAIQKYHQLRRGVIKERIEERKKRETV------PTLAELN 201

Query: 2358 XXXXXXXXXRSIGIGLKKKLNVGKSGITEGIVNGIHERWRHSELVKIKCEDICRLNMKRT 2179
                     R++GI L+KKL VGK+GITEGIVNGIHERWR  E+VKI+CEDICR+NMKRT
Sbjct: 202  LPEEELRRLRTLGIRLQKKLKVGKAGITEGIVNGIHERWRRYEVVKIRCEDICRMNMKRT 261

Query: 2178 HNLLERKTGGLVIWRSGSNIILYRGADYKYPYFFTDSNSTNDA-SNEASPDLDMDDGVHD 2002
            H LLE KTGGLV+WRSG+NI+LYRGADYKYPYFF+D N+ N +   EAS D  MD    D
Sbjct: 262  HELLEMKTGGLVVWRSGTNIVLYRGADYKYPYFFSDDNTANGSLREEASVDFRMDYR-ED 320

Query: 2001 GSDKLS--GTHVVKSPGPNALIGISHPHLVKGVGLPNRVRFQLPGEAQLAEEADMLLEGL 1828
               K S  G + ++S  P +L  +SHP L++GVG PNRVRFQLPGEAQLAEEAD LLEGL
Sbjct: 321  NEKKASSSGGNALRSSVPKSLSKVSHPPLIQGVGTPNRVRFQLPGEAQLAEEADRLLEGL 380

Query: 1827 GPRFIDWWGYDPLPVDADLLPAIVPGYKRPFRLLPYGVKFKLTNDEMTTLKRLGRPLPCH 1648
            GPRF DWWGY+PLPVDAD LPA VPGY+RPFRLLPYGVK  LTNDEMT L+RLGRPLPCH
Sbjct: 381  GPRFTDWWGYEPLPVDADFLPAAVPGYRRPFRLLPYGVKPILTNDEMTILRRLGRPLPCH 440

Query: 1647 FALG 1636
            FALG
Sbjct: 441  FALG 444



 Score =  434 bits (1116), Expect(2) = 0.0
 Identities = 233/369 (63%), Positives = 285/369 (77%), Gaps = 7/369 (1%)
 Frame = -1

Query: 1636 GRNKKLQGLAASIVKLWEKCEIAKIAIKRGVQNTNSEIMAEELKWLTGGTLLSRDKEFIV 1457
            GRN+KLQGLAA+I+KLWEKCEIAKIA+KRGVQNTNSE+MAEELK LTGGTLLSRDKEFIV
Sbjct: 444  GRNRKLQGLAAAIIKLWEKCEIAKIAVKRGVQNTNSELMAEELKNLTGGTLLSRDKEFIV 503

Query: 1456 FYRGKDFLPAAVSSAIEERRKYGINGAKTGKDHD---LNEKEHKHGTLEYAPQNEHHEAS 1286
             YRGKDFLPAAVS AIE+RR Y ++G + G D     ++ K+ + GT E    +E++   
Sbjct: 504  LYRGKDFLPAAVSLAIEKRRNYVLDGEEKGADKSFTTVSSKDQRLGTSENCNGDENNGKE 563

Query: 1285 DKKLKLHSEERKLRHAESAIKRTSSKLS----MXXXXXXXXXXXXXXXXXXEIPQQLEID 1118
            D+KL+L S+ R     E+AI+RTS+KLS                       E  Q+ E+D
Sbjct: 564  DQKLELASKRRHRSSTEAAIERTSAKLSKASLQALVKKDMAEKLLVELEKEETTQEPEVD 623

Query: 1117 KEGITEEERYMLRKVGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMIGSRTIEEV 938
            KEGITEEERYMLRK+GLRMK FLLLG+RGVFDGT+ENMHLHWKYRELVK++ G R+IEEV
Sbjct: 624  KEGITEEERYMLRKIGLRMKPFLLLGKRGVFDGTIENMHLHWKYRELVKIITGGRSIEEV 683

Query: 937  HGIARTLEAESGGILVAVERVSKGYAIIVYRGKNYKRPASLRPQTLLSKREAMKRSIEAQ 758
               ARTLEAESGGILVAVERVSKG+AIIVYRGKNY RPA LRP++LLSKREAMKRS+EAQ
Sbjct: 684  TARARTLEAESGGILVAVERVSKGFAIIVYRGKNYSRPACLRPRSLLSKREAMKRSLEAQ 743

Query: 757  RRESLKLHVLKLTRNIDELKLRLAEDKDSNDIHMAKDLEHGVVKEQEMNKIYITEDATSY 578
            RRESLKLHVLKLT+NID LKL+LA++K +N   +A++L+  + +EQE +K + +++  S 
Sbjct: 744  RRESLKLHVLKLTQNIDRLKLQLAKEKGTNKTDLAEELKLKLDEEQEPDKFHSSKNKMSL 803

Query: 577  RNSRIDHQS 551
             +  +  QS
Sbjct: 804  ASPELSPQS 812


>ref|XP_009762860.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Nicotiana sylvestris]
          Length = 1051

 Score =  468 bits (1205), Expect(2) = 0.0
 Identities = 254/427 (59%), Positives = 295/427 (69%), Gaps = 7/427 (1%)
 Frame = -2

Query: 2895 MLNPLCSSSRSRNQEFSYLIPSRTLLNXXXXXXXXXXXXPRLHFKSLLNQTSXXXXXXXX 2716
            ML PLC+        F  L P +TLL             P L  K   ++ S        
Sbjct: 1    MLLPLCN--------FHPLNPPKTLLYPSPSLPFFSTTHP-LSLKPFFSRFSIPVFATSP 51

Query: 2715 ADSGTLPQSAIQRIAEKLRSLGYVEEDKDNPEKGI-------NYNGSSPGEIFVPLPTKL 2557
             ++  LP+SAIQRIA KLRSLGY+ E+  N E  +       N N SSPG+IFVPLP +L
Sbjct: 52   NNTSPLPESAIQRIANKLRSLGYITENPKNQETTLEENSLSPNPNSSSPGQIFVPLPNQL 111

Query: 2556 PKYRVGHTLDQSWSTPENPVPVPGSGNAIQSFHELRHGVFKEKEEDRLRRRGLENGGKAP 2377
            PKYRVGHTLD SWSTPENPVP PG GN+IQ FHELR    KEKE++RL+ +  +   +AP
Sbjct: 112  PKYRVGHTLDVSWSTPENPVPQPGLGNSIQKFHELRGNFLKEKEKERLKNKDSKKE-RAP 170

Query: 2376 SLAXXXXXXXXXXXXRSIGIGLKKKLNVGKSGITEGIVNGIHERWRHSELVKIKCEDICR 2197
            SLA            R++GIGL+KKL +GK+GITEGIVNGIHERWR  ELVKI CED+CR
Sbjct: 171  SLAELTLPDEELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRRIELVKITCEDLCR 230

Query: 2196 LNMKRTHNLLERKTGGLVIWRSGSNIILYRGADYKYPYFFTDSNSTNDASNEASPDLDMD 2017
            LNMKRTH LLERKTGGLVIWRSGSNIILYRGADYKYPYF     S + +  +ASPDL   
Sbjct: 231  LNMKRTHELLERKTGGLVIWRSGSNIILYRGADYKYPYF-----SESSSRQDASPDLFT- 284

Query: 2016 DGVHDGSDKLSGTHVVKSPGPNALIGISHPHLVKGVGLPNRVRFQLPGEAQLAEEADMLL 1837
             G  + +   S    +KS   +     S   +++GVG P+RVRFQLPGEA+L EEAD LL
Sbjct: 285  -GTEEHTTNSSDMDAIKSDASDRK---SPTRVIQGVGSPDRVRFQLPGEAELTEEADKLL 340

Query: 1836 EGLGPRFIDWWGYDPLPVDADLLPAIVPGYKRPFRLLPYGVKFKLTNDEMTTLKRLGRPL 1657
            EGLGPRF DWWG +PLP+DADLLPA+VPGYK+PFRLLPYGVK KLTNDEMTTLKRLGRPL
Sbjct: 341  EGLGPRFTDWWGCEPLPIDADLLPAVVPGYKKPFRLLPYGVKPKLTNDEMTTLKRLGRPL 400

Query: 1656 PCHFALG 1636
            PCHFALG
Sbjct: 401  PCHFALG 407



 Score =  451 bits (1159), Expect(2) = 0.0
 Identities = 281/559 (50%), Positives = 337/559 (60%), Gaps = 14/559 (2%)
 Frame = -1

Query: 1636 GRNKKLQGLAASIVKLWEKCEIAKIAIKRGVQNTNSEIMAEELKWLTGGTLLSRDKEFIV 1457
            GRN+KLQGLAA+IVKLWEKCEIAK+A+KRGVQNTNSE+MAEELKWLTGGTLLSRDKEFIV
Sbjct: 407  GRNRKLQGLAAAIVKLWEKCEIAKVAVKRGVQNTNSELMAEELKWLTGGTLLSRDKEFIV 466

Query: 1456 FYRGKDFLPAAVSSAIEERRKYGINGAKTGKDHD--LNEKEHKHGTLEYAPQNEHHEASD 1283
            FYRGKDFLP+AVSSAI ERRK  +   K         N KE K  T+     +EH   +D
Sbjct: 467  FYRGKDFLPSAVSSAIAERRKQVVEEEKKSSFSSSVANTKEQKKSTVRSVSDDEHANQND 526

Query: 1282 KKLKLHSEERKLRHAESAIKRTSSKLSMXXXXXXXXXXXXXXXXXXEIPQQLEIDKEGIT 1103
            +K     E++KL   E+AIKRT+ KL+                   E+PQQ ++DKEGIT
Sbjct: 527  QKGV--QEKKKLTSMEAAIKRTADKLATAIEKKAKAEQLLVELEEDEMPQQPDLDKEGIT 584

Query: 1102 EEERYMLRKVGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMIGSRTIEEVHGIAR 923
            EEER+MLRK+GLRMK FLLLGRRGVFDGTVENMHLHWKYRELVKV+ G ++IEEV+ IAR
Sbjct: 585  EEERFMLRKIGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKVIAGRKSIEEVNQIAR 644

Query: 922  TLEAESGGILVAVERVSKGYAIIVYRGKNYKRPASLRPQTLLSKREAMKRSIEAQRRESL 743
             LEAESGGILVAVERV+KGYAIIVYRGKNY+RPASLRPQTLLSKREAMKRSIEAQRR+SL
Sbjct: 645  MLEAESGGILVAVERVNKGYAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSL 704

Query: 742  KLHVLKLTRNIDELKLRLAEDKDSNDIHMAKDLEHGVVKEQEMNKIYITEDATSYRNSRI 563
            KLHVLKLT+NI+ LK RL + ++   IHM                               
Sbjct: 705  KLHVLKLTQNIEALKSRLTKSEEM--IHMQSP---------------------------- 734

Query: 562  DHQSYPXXVAELEMNKIYITEDATSYRNPRIDHQSYPTGHSTEEARGSHGADVTHMDTKG 383
                        +M  + +TE  TS      ++ S      T E  G    D  H   K 
Sbjct: 735  ------------DMVGLQVTETGTSNAARGTNYHSSLASPCTSEDCGDVAKDADHSSQKE 782

Query: 382  SMDTAMDSVH--QQDLGENISLQSEVKGENVFDTSKADLQVKSVLKETKGSLDIK----- 224
             +  + ++ H  QQ+L  + S + E   E + DT +   Q  S  KE+K   ++      
Sbjct: 783  LLSDSSETDHSSQQELPSDSSFKYESNAEAMTDTIQPQRQSISSTKESKSMFNVNVDEEA 842

Query: 223  ----GKDGTVKIFRSPDQTSSSATAYVQP-HFCDNKAMTSNVGSREAMLEPSVDKSRERD 59
                  +   K  R  D+   S T  V      DN+   S V S +A  E    +SR   
Sbjct: 843  FGSAVSESVSKSSRGEDKIHFSETRSVNKLREVDNRKEVSEVDSVKAQQELRSTRSR--- 899

Query: 58   SPGTPFRARRLSNRERLLL 2
            S G P +   LSNRERLLL
Sbjct: 900  SEGMPPKKVHLSNRERLLL 918


>ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Vitis vinifera]
            gi|731419290|ref|XP_010660972.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1, chloroplastic
            isoform X1 [Vitis vinifera]
          Length = 1044

 Score =  468 bits (1204), Expect(2) = 0.0
 Identities = 241/385 (62%), Positives = 285/385 (74%), Gaps = 8/385 (2%)
 Frame = -2

Query: 2766 FKSLLNQTSXXXXXXXXADSGTLPQSAIQRIAEKLRSLGYVEEDK-------DNPEKGIN 2608
            FK+L  + S         D+ TLP++AIQRIAEKLRSLGYV+ D+       D P  G  
Sbjct: 55   FKTLNPKPSKFILRASNPDAQTLPKTAIQRIAEKLRSLGYVDGDESRKVLSSDKPANG-- 112

Query: 2607 YNGSSPGEIFVPLPTKLPKYRVGHTLDQSWSTPENPVPVPGSGNAIQSFHELRHGVFKEK 2428
                S GEIFVPLP +LPK+RVGHT+DQSWS PENPVP PG+G  I  FHELR  V +EK
Sbjct: 113  ----SAGEIFVPLPNQLPKHRVGHTIDQSWSLPENPVPEPGTGGVITRFHELRKEVKREK 168

Query: 2427 EEDRLRRRGLENGGKAPSLAXXXXXXXXXXXXRSIGIGLKKKLNVGKSGITEGIVNGIHE 2248
            +  R      +   +AP+LA            + IGI ++KKL VGK+GITEGIVNGIHE
Sbjct: 169  KLVR------KEDERAPTLAELTLPEEELRRLKGIGIQIRKKLKVGKAGITEGIVNGIHE 222

Query: 2247 RWRHSELVKIKCEDICRLNMKRTHNLLERKTGGLVIWRSGSNIILYRGADYKYPYFFTDS 2068
            RWR +E+VKI+CEDIC+LNMKRTH++LERKTGGLVIWRSGS IILYRGA+YKYPYF +D+
Sbjct: 223  RWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVIWRSGSYIILYRGANYKYPYFLSDN 282

Query: 2067 NSTNDASNEASPDLDMDDGVHDGSDKLS-GTHVVKSPGPNALIGISHPHLVKGVGLPNRV 1891
            N  ND+S++AS D  M++  HDG +  S G   VKS GP     I+   L++GVG P RV
Sbjct: 283  NLPNDSSHDASSDSQMNNEEHDGKEVCSSGKGDVKSAGPMPANKIAPLSLIQGVGYPTRV 342

Query: 1890 RFQLPGEAQLAEEADMLLEGLGPRFIDWWGYDPLPVDADLLPAIVPGYKRPFRLLPYGVK 1711
            RFQLPGEAQL EEAD LL+GLGPRF DWWGYDPLP+DADLLPA+VPGY+RPFRLLPYG+K
Sbjct: 343  RFQLPGEAQLEEEADRLLDGLGPRFTDWWGYDPLPIDADLLPAVVPGYRRPFRLLPYGLK 402

Query: 1710 FKLTNDEMTTLKRLGRPLPCHFALG 1636
             KLTNDEMT L+RLGRPLPCHFALG
Sbjct: 403  PKLTNDEMTVLRRLGRPLPCHFALG 427



 Score =  447 bits (1151), Expect(2) = 0.0
 Identities = 273/551 (49%), Positives = 333/551 (60%), Gaps = 6/551 (1%)
 Frame = -1

Query: 1636 GRNKKLQGLAASIVKLWEKCEIAKIAIKRGVQNTNSEIMAEELKWLTGGTLLSRDKEFIV 1457
            GRN+KLQGLAAS++KLWEKCEIAKIA+KRGVQNTNSE+MAEELK LTGGTLLSRD+EFIV
Sbjct: 427  GRNRKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSRDREFIV 486

Query: 1456 FYRGKDFLPAAVSSAIEERRKYGINGAKTGKDHD---LNEKEHKHGTLEYAPQNEHHEAS 1286
            FYRGKDFLP AVSSAIE RRKYGI+  K   DH    +N +E + GT E+A   +     
Sbjct: 487  FYRGKDFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAINAEESELGTSEHASDKDCDGTD 546

Query: 1285 DKKLKLHSEERKLRHAESAIKRTSSKLSMXXXXXXXXXXXXXXXXXXEIPQQLEIDKEGI 1106
            D+K    S+ R LR AE+ ++RT+ KLSM                  +IPQQ EIDKEGI
Sbjct: 547  DQKTNSLSKRRMLRSAEAVVERTNIKLSMALEKKERAEKLLAELEEAQIPQQPEIDKEGI 606

Query: 1105 TEEERYMLRKVGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMIGSRTIEEVHGIA 926
            TEEERYMLRKVGLRMK FLLLGRRG+FDGTVENMHLHWKYRELVK++   R+IE++HG+A
Sbjct: 607  TEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVA 666

Query: 925  RTLEAESGGILVAVERVSKGYAIIVYRGKNYKRPASLRPQTLLSKREAMKRSIEAQRRES 746
            RTLEAESGGILVAVERVSKGYAII+YRGKNYKRPASLRPQTLL+KREA+KRS+EAQRRES
Sbjct: 667  RTLEAESGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNKREALKRSLEAQRRES 726

Query: 745  LKLHVLKLTRNIDELKLRLA---EDKDSNDIHMAKDLEHGVVKEQEMNKIYITEDATSYR 575
            LKLHVL+LTRNIDELK +L    +DK++N   +       + +E+    + +   +    
Sbjct: 727  LKLHVLRLTRNIDELKHQLVSRIKDKETNSKQLVDKSRLHLARERYGADVILIHSSDGMD 786

Query: 574  NSRIDHQSYPXXVAELEMNKIYITEDATSYRNPRIDHQSYPTGHSTEEARGSHGADVTHM 395
            +SR   Q                    TS+ + RID  S                     
Sbjct: 787  SSRDSLQ--------------------TSHNDKRIDFPS--------------------- 805

Query: 394  DTKGSMDTAMDSVHQQDLGENISLQSEVKGENVFDTSKADLQVKSVLKETKGSLDIKGKD 215
                  D+  D  + +   E++  + E    NV      D+  +         L  +G+ 
Sbjct: 806  ----MCDSDTDEANPEPSSESVLKEIET---NVL----TDMNEEGECTTCSEDLVSQGET 854

Query: 214  GTVKIFRSPDQTSSSATAYVQPHFCDNKAMTSNVGSREAMLEPSVDKSRERDSPGTPFRA 35
                I    +   SS                  V S +   +P V +  +  S   PFRA
Sbjct: 855  SCYAIVNHEETMESS------------------VKSSKNEFKPPVQRPVDTRSNEMPFRA 896

Query: 34   RRLSNRERLLL 2
              LSNRERLLL
Sbjct: 897  APLSNRERLLL 907


>emb|CBI34982.3| unnamed protein product [Vitis vinifera]
          Length = 1028

 Score =  468 bits (1204), Expect(2) = 0.0
 Identities = 241/385 (62%), Positives = 285/385 (74%), Gaps = 8/385 (2%)
 Frame = -2

Query: 2766 FKSLLNQTSXXXXXXXXADSGTLPQSAIQRIAEKLRSLGYVEEDK-------DNPEKGIN 2608
            FK+L  + S         D+ TLP++AIQRIAEKLRSLGYV+ D+       D P  G  
Sbjct: 55   FKTLNPKPSKFILRASNPDAQTLPKTAIQRIAEKLRSLGYVDGDESRKVLSSDKPANG-- 112

Query: 2607 YNGSSPGEIFVPLPTKLPKYRVGHTLDQSWSTPENPVPVPGSGNAIQSFHELRHGVFKEK 2428
                S GEIFVPLP +LPK+RVGHT+DQSWS PENPVP PG+G  I  FHELR  V +EK
Sbjct: 113  ----SAGEIFVPLPNQLPKHRVGHTIDQSWSLPENPVPEPGTGGVITRFHELRKEVKREK 168

Query: 2427 EEDRLRRRGLENGGKAPSLAXXXXXXXXXXXXRSIGIGLKKKLNVGKSGITEGIVNGIHE 2248
            +  R      +   +AP+LA            + IGI ++KKL VGK+GITEGIVNGIHE
Sbjct: 169  KLVR------KEDERAPTLAELTLPEEELRRLKGIGIQIRKKLKVGKAGITEGIVNGIHE 222

Query: 2247 RWRHSELVKIKCEDICRLNMKRTHNLLERKTGGLVIWRSGSNIILYRGADYKYPYFFTDS 2068
            RWR +E+VKI+CEDIC+LNMKRTH++LERKTGGLVIWRSGS IILYRGA+YKYPYF +D+
Sbjct: 223  RWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVIWRSGSYIILYRGANYKYPYFLSDN 282

Query: 2067 NSTNDASNEASPDLDMDDGVHDGSDKLS-GTHVVKSPGPNALIGISHPHLVKGVGLPNRV 1891
            N  ND+S++AS D  M++  HDG +  S G   VKS GP     I+   L++GVG P RV
Sbjct: 283  NLPNDSSHDASSDSQMNNEEHDGKEVCSSGKGDVKSAGPMPANKIAPLSLIQGVGYPTRV 342

Query: 1890 RFQLPGEAQLAEEADMLLEGLGPRFIDWWGYDPLPVDADLLPAIVPGYKRPFRLLPYGVK 1711
            RFQLPGEAQL EEAD LL+GLGPRF DWWGYDPLP+DADLLPA+VPGY+RPFRLLPYG+K
Sbjct: 343  RFQLPGEAQLEEEADRLLDGLGPRFTDWWGYDPLPIDADLLPAVVPGYRRPFRLLPYGLK 402

Query: 1710 FKLTNDEMTTLKRLGRPLPCHFALG 1636
             KLTNDEMT L+RLGRPLPCHFALG
Sbjct: 403  PKLTNDEMTVLRRLGRPLPCHFALG 427



 Score =  447 bits (1151), Expect(2) = 0.0
 Identities = 273/551 (49%), Positives = 333/551 (60%), Gaps = 6/551 (1%)
 Frame = -1

Query: 1636 GRNKKLQGLAASIVKLWEKCEIAKIAIKRGVQNTNSEIMAEELKWLTGGTLLSRDKEFIV 1457
            GRN+KLQGLAAS++KLWEKCEIAKIA+KRGVQNTNSE+MAEELK LTGGTLLSRD+EFIV
Sbjct: 427  GRNRKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSRDREFIV 486

Query: 1456 FYRGKDFLPAAVSSAIEERRKYGINGAKTGKDHD---LNEKEHKHGTLEYAPQNEHHEAS 1286
            FYRGKDFLP AVSSAIE RRKYGI+  K   DH    +N +E + GT E+A   +     
Sbjct: 487  FYRGKDFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAINAEESELGTSEHASDKDCDGTD 546

Query: 1285 DKKLKLHSEERKLRHAESAIKRTSSKLSMXXXXXXXXXXXXXXXXXXEIPQQLEIDKEGI 1106
            D+K    S+ R LR AE+ ++RT+ KLSM                  +IPQQ EIDKEGI
Sbjct: 547  DQKTNSLSKRRMLRSAEAVVERTNIKLSMALEKKERAEKLLAELEEAQIPQQPEIDKEGI 606

Query: 1105 TEEERYMLRKVGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMIGSRTIEEVHGIA 926
            TEEERYMLRKVGLRMK FLLLGRRG+FDGTVENMHLHWKYRELVK++   R+IE++HG+A
Sbjct: 607  TEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVA 666

Query: 925  RTLEAESGGILVAVERVSKGYAIIVYRGKNYKRPASLRPQTLLSKREAMKRSIEAQRRES 746
            RTLEAESGGILVAVERVSKGYAII+YRGKNYKRPASLRPQTLL+KREA+KRS+EAQRRES
Sbjct: 667  RTLEAESGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNKREALKRSLEAQRRES 726

Query: 745  LKLHVLKLTRNIDELKLRLA---EDKDSNDIHMAKDLEHGVVKEQEMNKIYITEDATSYR 575
            LKLHVL+LTRNIDELK +L    +DK++N   +       + +E+    + +   +    
Sbjct: 727  LKLHVLRLTRNIDELKHQLVSRIKDKETNSKQLVDKSRLHLARERYGADVILIHSSDGMD 786

Query: 574  NSRIDHQSYPXXVAELEMNKIYITEDATSYRNPRIDHQSYPTGHSTEEARGSHGADVTHM 395
            +SR   Q                    TS+ + RID  S                     
Sbjct: 787  SSRDSLQ--------------------TSHNDKRIDFPS--------------------- 805

Query: 394  DTKGSMDTAMDSVHQQDLGENISLQSEVKGENVFDTSKADLQVKSVLKETKGSLDIKGKD 215
                  D+  D  + +   E++  + E    NV      D+  +         L  +G+ 
Sbjct: 806  ----MCDSDTDEANPEPSSESVLKEIET---NVL----TDMNEEGECTTCSEDLVSQGET 854

Query: 214  GTVKIFRSPDQTSSSATAYVQPHFCDNKAMTSNVGSREAMLEPSVDKSRERDSPGTPFRA 35
                I    +   SS                  V S +   +P V +  +  S   PFRA
Sbjct: 855  SCYAIVNHEETMESS------------------VKSSKNEFKPPVQRPVDTRSNEMPFRA 896

Query: 34   RRLSNRERLLL 2
              LSNRERLLL
Sbjct: 897  APLSNRERLLL 907


>ref|XP_009614930.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Nicotiana tomentosiformis]
          Length = 1051

 Score =  469 bits (1207), Expect(2) = 0.0
 Identities = 260/439 (59%), Positives = 297/439 (67%), Gaps = 19/439 (4%)
 Frame = -2

Query: 2895 MLNPLCSSSRSRNQEFSYLIPSRTLLNXXXXXXXXXXXXPRLHFKSLLNQTSXXXXXXXX 2716
            ML PLC+        F  L P +TLL             P L  K   +++S        
Sbjct: 1    MLLPLCN--------FHPLNPPKTLLYPSPSLPFFSTTHP-LSLKPFFSRSSIPVFATSP 51

Query: 2715 ADSGTLPQSAIQRIAEKLRSLGYVEEDKDNPEKGI-------NYNGSSPGEIFVPLPTKL 2557
             ++  LP+SAIQRIA KLRSLGY+ E+  N E  +       N N SSPG+IFVPLP +L
Sbjct: 52   NNTSPLPESAIQRIANKLRSLGYITENPKNQETTLEENSLSPNPNSSSPGQIFVPLPNQL 111

Query: 2556 PKYRVGHTLDQSWSTPENPVPVPGSGNAIQSFHELRHGVFKEKEEDRLRRRGLENGGKAP 2377
            PKYRVGHTLD SWSTPENPVP PG GN+IQ FHELR    KEKE++RL+ +  +   +AP
Sbjct: 112  PKYRVGHTLDVSWSTPENPVPHPGLGNSIQKFHELRSNFLKEKEKERLKNKDNKKE-RAP 170

Query: 2376 SLAXXXXXXXXXXXXRSIGIGLKKKLNVGKSGITEGIVNGIHERWRHSELVKIKCEDICR 2197
            SLA            R++GIGL+KKL +GK+GITEGIVNGIHERWR  ELVKI CED+CR
Sbjct: 171  SLAELTLPAEELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRRIELVKITCEDLCR 230

Query: 2196 LNMKRTHNLLERKTGGLVIWRSGSNIILYRGADYKYPYFFTDSNSTNDASNEASPDL--- 2026
            LNMKRTH LLERKTGGLVIWRSGSNIILYRGADYKYPYF ++SNS  DAS    PDL   
Sbjct: 231  LNMKRTHELLERKTGGLVIWRSGSNIILYRGADYKYPYF-SESNSGQDAS----PDLFTG 285

Query: 2025 ---------DMDDGVHDGSDKLSGTHVVKSPGPNALIGISHPHLVKGVGLPNRVRFQLPG 1873
                     DMD    D SD+ S T V++                 GVG P+RVRFQLPG
Sbjct: 286  TEEHMTNSSDMDAIKSDASDRKSPTRVIQ-----------------GVGSPDRVRFQLPG 328

Query: 1872 EAQLAEEADMLLEGLGPRFIDWWGYDPLPVDADLLPAIVPGYKRPFRLLPYGVKFKLTND 1693
            EA+L EEAD LLEGLGPRF DWWG +PLP+DAD LPA+VPGYK+PFRLLPYGVK KLTND
Sbjct: 329  EAELTEEADKLLEGLGPRFTDWWGCEPLPIDADFLPAVVPGYKKPFRLLPYGVKPKLTND 388

Query: 1692 EMTTLKRLGRPLPCHFALG 1636
            EMTTLKRLGRPLPCHFALG
Sbjct: 389  EMTTLKRLGRPLPCHFALG 407



 Score =  446 bits (1147), Expect(2) = 0.0
 Identities = 285/562 (50%), Positives = 337/562 (59%), Gaps = 17/562 (3%)
 Frame = -1

Query: 1636 GRNKKLQGLAASIVKLWEKCEIAKIAIKRGVQNTNSEIMAEELKWLTGGTLLSRDKEFIV 1457
            GRN+KLQGLAA+IVKLWEKCEIAK+A+KRGVQNTNSE+MAEELKWLTGGTLLSRDKEFIV
Sbjct: 407  GRNRKLQGLAAAIVKLWEKCEIAKVAVKRGVQNTNSELMAEELKWLTGGTLLSRDKEFIV 466

Query: 1456 FYRGKDFLPAAVSSAIEERRKYGINGAKTGKDHD--LNEKEHKHGTLEYAPQNEHHEASD 1283
            FYRGKDFLP+AVSSAI ERRK  +   K         N KE K  T      +EH   +D
Sbjct: 467  FYRGKDFLPSAVSSAIAERRKQVVEEEKKSSFSSSVANTKERKKSTARSVSDDEHANQND 526

Query: 1282 KKLKLHSEERKLRHAESAIKRTSSKLSMXXXXXXXXXXXXXXXXXXEIPQQLEIDKEGIT 1103
            +K  +H E++KL   E+AIKRT+ KL+                   E+PQQ ++DKEGIT
Sbjct: 527  QK-GVH-EKKKLTSMEAAIKRTADKLATAIEKKAKAEKLLVELEEDEMPQQPDMDKEGIT 584

Query: 1102 EEERYMLRKVGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMIGSRTIEEVHGIAR 923
            EEER+MLRK+GLRMK FLLLGRRGVFDGTVENMHLHWKYRELVKV+ G + IEEV+ IAR
Sbjct: 585  EEERFMLRKIGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKVITGRKGIEEVNQIAR 644

Query: 922  TLEAESGGILVAVERVSKGYAIIVYRGKNYKRPASLRPQTLLSKREAMKRSIEAQRRESL 743
             LEAESGGILVAVERV+KGYAIIVYRGKNY+RPASLRPQTLLSKREAMKRSIEAQRR+SL
Sbjct: 645  MLEAESGGILVAVERVNKGYAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSL 704

Query: 742  KLHVLKLTRNIDELKLRLAEDKDSNDIHMAKDLEHGVVKEQEMNKIYITEDATSYRNSRI 563
            KLHVLKL +NI+ LK RL                    K +EM                 
Sbjct: 705  KLHVLKLAQNIEALKSRL-------------------TKSEEM----------------- 728

Query: 562  DHQSYPXXVAELEMNKIYITEDATSYRNPRIDHQSYPTGHSTEEARGSHGADVTHMDTKG 383
             H   P  V       + + E  TS      ++QS      T E  G    D  H   K 
Sbjct: 729  IHIQSPDIVG------LQVAETGTSNAAGGTNYQSSLASPCTSEDFGGAAKDTDHSSQKE 782

Query: 382  SMDTAMDSVH--QQDLGENISLQSEVKGENVFDTSKADLQVKSVLKETKGSLDIKGKDGT 209
                + ++ H  QQ+   + S Q E K E + DT +   Q  S  KE+K   ++   +  
Sbjct: 783  LPSDSSETDHSSQQEFPSDSSFQYESKAEAMSDTIQPQHQSISSTKESKSMFNVNVDE-- 840

Query: 208  VKIFRS--PDQTSSSATAYVQPHF-----------CDNKAMTSNVGSREAMLEPSVDKSR 68
             K F S   +  S S+   V+ HF            DN+   S V S +   E    +SR
Sbjct: 841  -KAFGSAVSESVSKSSRGEVKIHFSETRSVNKLREVDNRKEVSEVDSVKPQQELRSTRSR 899

Query: 67   ERDSPGTPFRARRLSNRERLLL 2
               S G P +   LSNRERLLL
Sbjct: 900  ---SEGMPPKKVHLSNRERLLL 918


>ref|XP_010660973.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Vitis vinifera]
          Length = 1044

 Score =  468 bits (1204), Expect(2) = 0.0
 Identities = 241/385 (62%), Positives = 285/385 (74%), Gaps = 8/385 (2%)
 Frame = -2

Query: 2766 FKSLLNQTSXXXXXXXXADSGTLPQSAIQRIAEKLRSLGYVEEDK-------DNPEKGIN 2608
            FK+L  + S         D+ TLP++AIQRIAEKLRSLGYV+ D+       D P  G  
Sbjct: 55   FKTLNPKPSKFILRASNPDAQTLPKTAIQRIAEKLRSLGYVDGDESRKVLSSDKPANG-- 112

Query: 2607 YNGSSPGEIFVPLPTKLPKYRVGHTLDQSWSTPENPVPVPGSGNAIQSFHELRHGVFKEK 2428
                S GEIFVPLP +LPK+RVGHT+DQSWS PENPVP PG+G  I  FHELR  V +EK
Sbjct: 113  ----SAGEIFVPLPNQLPKHRVGHTIDQSWSLPENPVPEPGTGGVITRFHELRKEVKREK 168

Query: 2427 EEDRLRRRGLENGGKAPSLAXXXXXXXXXXXXRSIGIGLKKKLNVGKSGITEGIVNGIHE 2248
            +  R      +   +AP+LA            + IGI ++KKL VGK+GITEGIVNGIHE
Sbjct: 169  KLVR------KEDERAPTLAELTLPEEELRRLKGIGIQIRKKLKVGKAGITEGIVNGIHE 222

Query: 2247 RWRHSELVKIKCEDICRLNMKRTHNLLERKTGGLVIWRSGSNIILYRGADYKYPYFFTDS 2068
            RWR +E+VKI+CEDIC+LNMKRTH++LERKTGGLVIWRSGS IILYRGA+YKYPYF +D+
Sbjct: 223  RWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVIWRSGSYIILYRGANYKYPYFLSDN 282

Query: 2067 NSTNDASNEASPDLDMDDGVHDGSDKLS-GTHVVKSPGPNALIGISHPHLVKGVGLPNRV 1891
            N  ND+S++AS D  M++  HDG +  S G   VKS GP     I+   L++GVG P RV
Sbjct: 283  NLPNDSSHDASSDSQMNNEEHDGKEVCSSGKGDVKSAGPMPANKIAPLSLIQGVGYPTRV 342

Query: 1890 RFQLPGEAQLAEEADMLLEGLGPRFIDWWGYDPLPVDADLLPAIVPGYKRPFRLLPYGVK 1711
            RFQLPGEAQL EEAD LL+GLGPRF DWWGYDPLP+DADLLPA+VPGY+RPFRLLPYG+K
Sbjct: 343  RFQLPGEAQLEEEADRLLDGLGPRFTDWWGYDPLPIDADLLPAVVPGYRRPFRLLPYGLK 402

Query: 1710 FKLTNDEMTTLKRLGRPLPCHFALG 1636
             KLTNDEMT L+RLGRPLPCHFALG
Sbjct: 403  PKLTNDEMTVLRRLGRPLPCHFALG 427



 Score =  447 bits (1150), Expect(2) = 0.0
 Identities = 273/551 (49%), Positives = 333/551 (60%), Gaps = 6/551 (1%)
 Frame = -1

Query: 1636 GRNKKLQGLAASIVKLWEKCEIAKIAIKRGVQNTNSEIMAEELKWLTGGTLLSRDKEFIV 1457
            GRN+KLQGLAAS++KLWEKCEIAKIA+KRGVQNTNSE+MAEELK LTGGTLLSRD+EFIV
Sbjct: 427  GRNRKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSRDREFIV 486

Query: 1456 FYRGKDFLPAAVSSAIEERRKYGINGAKTGKDHD---LNEKEHKHGTLEYAPQNEHHEAS 1286
            FYRGKDFLP AVSSAIE RRKYGI+  K   DH    +N +E + GT E+A   +     
Sbjct: 487  FYRGKDFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAINAEESELGTSEHASDKDCDGTD 546

Query: 1285 DKKLKLHSEERKLRHAESAIKRTSSKLSMXXXXXXXXXXXXXXXXXXEIPQQLEIDKEGI 1106
            D+K    S+ R LR AE+ ++RT+ KLSM                  +IPQQ EIDKEGI
Sbjct: 547  DQKTNSLSKRRMLRSAEAVVERTNIKLSMALEKKERAEKLLAELEEAQIPQQPEIDKEGI 606

Query: 1105 TEEERYMLRKVGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMIGSRTIEEVHGIA 926
            TEEERYMLRKVGLRMK FLLLGRRG+FDGTVENMHLHWKYRELVK++   R+IE++HG+A
Sbjct: 607  TEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVA 666

Query: 925  RTLEAESGGILVAVERVSKGYAIIVYRGKNYKRPASLRPQTLLSKREAMKRSIEAQRRES 746
            RTLEAESGGILVAVERVSKGYAII+YRGKNYKRPASLRPQTLL+KREA+KRS+EAQRRES
Sbjct: 667  RTLEAESGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNKREALKRSLEAQRRES 726

Query: 745  LKLHVLKLTRNIDELKLRL---AEDKDSNDIHMAKDLEHGVVKEQEMNKIYITEDATSYR 575
            LKLHVL+LTRNIDELK +L    +DK++N   +       + +E+    + +   +    
Sbjct: 727  LKLHVLRLTRNIDELKHQLFSRIKDKETNSKQLVDKSRLHLARERYGADVILIHSSDGMD 786

Query: 574  NSRIDHQSYPXXVAELEMNKIYITEDATSYRNPRIDHQSYPTGHSTEEARGSHGADVTHM 395
            +SR   Q                    TS+ + RID  S                     
Sbjct: 787  SSRDSLQ--------------------TSHNDKRIDFPS--------------------- 805

Query: 394  DTKGSMDTAMDSVHQQDLGENISLQSEVKGENVFDTSKADLQVKSVLKETKGSLDIKGKD 215
                  D+  D  + +   E++  + E    NV      D+  +         L  +G+ 
Sbjct: 806  ----MCDSDTDEANPEPSSESVLKEIET---NVL----TDMNEEGECTTCSEDLVSQGET 854

Query: 214  GTVKIFRSPDQTSSSATAYVQPHFCDNKAMTSNVGSREAMLEPSVDKSRERDSPGTPFRA 35
                I    +   SS                  V S +   +P V +  +  S   PFRA
Sbjct: 855  SCYAIVNHEETMESS------------------VKSSKNEFKPPVQRPVDTRSNEMPFRA 896

Query: 34   RRLSNRERLLL 2
              LSNRERLLL
Sbjct: 897  APLSNRERLLL 907


>ref|XP_006338518.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X1 [Solanum tuberosum]
          Length = 1049

 Score =  473 bits (1216), Expect(2) = 0.0
 Identities = 242/363 (66%), Positives = 285/363 (78%), Gaps = 4/363 (1%)
 Frame = -2

Query: 2712 DSGTLPQSAIQRIAEKLRSLGYVEEDK--DNPEKGINYN--GSSPGEIFVPLPTKLPKYR 2545
            D+  LP+SAI+RIA+KLRSLG+VEE K  +  E  ++ N   +SPG+IFVPLPT+LPKYR
Sbjct: 52   DTEALPESAIRRIADKLRSLGFVEEPKNQETQENALSSNPTANSPGQIFVPLPTQLPKYR 111

Query: 2544 VGHTLDQSWSTPENPVPVPGSGNAIQSFHELRHGVFKEKEEDRLRRRGLENGGKAPSLAX 2365
            VGHTLD SWSTPENPVP PG GN+IQ FHELR    KEKE++RL+ +  +   +APSLA 
Sbjct: 112  VGHTLDTSWSTPENPVPQPGLGNSIQKFHELRDEFLKEKEKERLKNKEYKKE-RAPSLAE 170

Query: 2364 XXXXXXXXXXXRSIGIGLKKKLNVGKSGITEGIVNGIHERWRHSELVKIKCEDICRLNMK 2185
                       R++GI L+KKL +GK+GITEGIVNGIHERWR  ELVKI CEDICRLNMK
Sbjct: 171  LTLPAEELRRLRTVGIALRKKLKIGKAGITEGIVNGIHERWRRMELVKITCEDICRLNMK 230

Query: 2184 RTHNLLERKTGGLVIWRSGSNIILYRGADYKYPYFFTDSNSTNDASNEASPDLDMDDGVH 2005
            RTH LLE+KTGGLVIWRSGSNIILYRGADYKYPYF ++ +  N+++ +A+PDL M  G  
Sbjct: 231  RTHELLEKKTGGLVIWRSGSNIILYRGADYKYPYF-SEISFENNSAQDATPDLFM--GTE 287

Query: 2004 DGSDKLSGTHVVKSPGPNALIGISHPHLVKGVGLPNRVRFQLPGEAQLAEEADMLLEGLG 1825
            +     SGT VVK   P+A    S P +++GVG P+RVRF+LPGEA+  EEAD LLEGLG
Sbjct: 288  EHMTNSSGTDVVK---PDASDRKSPPRVIQGVGSPDRVRFELPGEAEHTEEADKLLEGLG 344

Query: 1824 PRFIDWWGYDPLPVDADLLPAIVPGYKRPFRLLPYGVKFKLTNDEMTTLKRLGRPLPCHF 1645
            PRF DWWG +PLP+DADLLPAIVPGYKRPFRLLPYGVK KLTNDEMTTL+RLGRPLPCHF
Sbjct: 345  PRFTDWWGCEPLPIDADLLPAIVPGYKRPFRLLPYGVKPKLTNDEMTTLRRLGRPLPCHF 404

Query: 1644 ALG 1636
             LG
Sbjct: 405  VLG 407



 Score =  437 bits (1124), Expect(2) = 0.0
 Identities = 277/555 (49%), Positives = 343/555 (61%), Gaps = 10/555 (1%)
 Frame = -1

Query: 1636 GRNKKLQGLAASIVKLWEKCEIAKIAIKRGVQNTNSEIMAEELKWLTGGTLLSRDKEFIV 1457
            GRN+KLQGLAA+IVKLWEKCEIAK+A+KRGVQNTNSE+MAEELKWLTGGTLLSRD+EFIV
Sbjct: 407  GRNRKLQGLAAAIVKLWEKCEIAKVAVKRGVQNTNSELMAEELKWLTGGTLLSRDREFIV 466

Query: 1456 FYRGKDFLPAAVSSAIEERRKYGINGAKTGKDHD--LNEKEHKHGTLEYAPQNEHHEASD 1283
            FYRGKDFLP+AVSSAIEERRK      K    +    N KE K  T      + H   ++
Sbjct: 467  FYRGKDFLPSAVSSAIEERRKQVFEEEKRNGFNSSVANAKERKQSTTGSVSDDGHARRNN 526

Query: 1282 KKLKLHSEERKLRHAESAIKRTSSKLSMXXXXXXXXXXXXXXXXXXEIPQQLEIDKEGIT 1103
            +K     E++KL   E+AIKRT+ KL+                   E+PQQ ++DKEGIT
Sbjct: 527  QKGV--QEKKKLTSMEAAIKRTADKLTTALEKKAEAENLLLELEEDEVPQQSDMDKEGIT 584

Query: 1102 EEERYMLRKVGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMIGSRTIEEVHGIAR 923
            EEER+MLRK+GLRMK FLLLGRRGVFDGTVENMHLHWKYRELVKV+ G +TIEEVH IAR
Sbjct: 585  EEERFMLRKIGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKVITGRKTIEEVHQIAR 644

Query: 922  TLEAESGGILVAVERVSKGYAIIVYRGKNYKRPASLRPQTLLSKREAMKRSIEAQRRESL 743
             LEAESGGILVAVE V+KG+AIIVYRGKNY+RPASLRPQTLLSKREAMKRSIEAQRR+SL
Sbjct: 645  MLEAESGGILVAVELVNKGHAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSL 704

Query: 742  KLHVLKLTRNIDELKLRLAEDKDSNDIHMAKDLEHGVVKEQEMNKIYITEDATSYRNSRI 563
            KLHVLKLT+NI+ L+ RLA++++   I  + D+   V ++  +  I      T+Y++S  
Sbjct: 705  KLHVLKLTQNIEALQSRLAKNEEMVHI-QSPDI---VDRQVPVTGISDAAGGTNYQSSSA 760

Query: 562  DHQSYPXXVAELEMNKIYITEDATSYRNPRIDHQSYPTGHSTEEARGSHGADVTHMDTKG 383
                               TED+           +  T  S+++   S  +D  H     
Sbjct: 761  SP-----------------TEDS--------GDAAEDTDPSSQKELSSDSSDTDHNS--- 792

Query: 382  SMDTAMDSVHQQDLGENISLQSEVKGENVFDTSKADLQVKSVLKETKGSLDIKGKDGTVK 203
                      QQ+   +   Q E K E V DT + + Q  S +KE+K   ++     T  
Sbjct: 793  ----------QQEFPIDPFFQYEGKVEAVGDTIQPEHQSISSIKESKSMFNVNVDQKTFG 842

Query: 202  IFRSPDQTSSSATAYVQPHFCDNKAMTSN---VGSREAMLEPSVD-----KSRERDSPGT 47
               S +  S S+   V+ HF + ++          +E    PSV      +S    S G 
Sbjct: 843  SAVS-ESVSKSSRGEVKIHFSETRSFNKPREVDDKKEVSQLPSVKPQQALRSTRSRSEGM 901

Query: 46   PFRARRLSNRERLLL 2
            P R  +LSNRERLLL
Sbjct: 902  PTRKVQLSNRERLLL 916


>ref|XP_004232267.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Solanum lycopersicum]
          Length = 1049

 Score =  464 bits (1194), Expect(2) = 0.0
 Identities = 236/363 (65%), Positives = 282/363 (77%), Gaps = 4/363 (1%)
 Frame = -2

Query: 2712 DSGTLPQSAIQRIAEKLRSLGYVEEDK--DNPEKGINYN--GSSPGEIFVPLPTKLPKYR 2545
            D+  LP+SAI+RIA+KLRSLG+VE+ K  +  E  ++ N   +SPG+IFVPLPT+LPKYR
Sbjct: 52   DTEALPESAIRRIADKLRSLGFVEQPKNQETQENALSSNPTANSPGQIFVPLPTQLPKYR 111

Query: 2544 VGHTLDQSWSTPENPVPVPGSGNAIQSFHELRHGVFKEKEEDRLRRRGLENGGKAPSLAX 2365
            VGHTLD SWSTPENPVP PG G +IQ FHELR    KEK+++RL+ +  +   +APSLA 
Sbjct: 112  VGHTLDTSWSTPENPVPQPGLGKSIQKFHELRDEFLKEKDKERLKNKEYKKE-RAPSLAE 170

Query: 2364 XXXXXXXXXXXRSIGIGLKKKLNVGKSGITEGIVNGIHERWRHSELVKIKCEDICRLNMK 2185
                       R++GI L+KKL +GK+GITEGIVNGIHERWR  ELVKI CEDICRLNMK
Sbjct: 171  LTLPAEELRRLRTVGIALRKKLKIGKAGITEGIVNGIHERWRRIELVKITCEDICRLNMK 230

Query: 2184 RTHNLLERKTGGLVIWRSGSNIILYRGADYKYPYFFTDSNSTNDASNEASPDLDMDDGVH 2005
            RTH LLE+KTGGLVIWRSGSNIILYRGADYKYPYF ++++  N+++ +A+PDL M  G  
Sbjct: 231  RTHELLEKKTGGLVIWRSGSNIILYRGADYKYPYF-SENSFENNSAQDANPDLFM--GAE 287

Query: 2004 DGSDKLSGTHVVKSPGPNALIGISHPHLVKGVGLPNRVRFQLPGEAQLAEEADMLLEGLG 1825
            +     SG   VKS   +     S P +++GVG P+RVRF+LPGEA+  EEAD LLEGLG
Sbjct: 288  EHMTNSSGIDAVKSDASDRK---SPPRVIQGVGSPDRVRFELPGEAEHTEEADKLLEGLG 344

Query: 1824 PRFIDWWGYDPLPVDADLLPAIVPGYKRPFRLLPYGVKFKLTNDEMTTLKRLGRPLPCHF 1645
            PRF DWWG +PLP+DADLLPAIVPGYKRPFRLLPYGVK KLTNDEMTTL+RLGRPLPCHF
Sbjct: 345  PRFTDWWGCEPLPIDADLLPAIVPGYKRPFRLLPYGVKPKLTNDEMTTLRRLGRPLPCHF 404

Query: 1644 ALG 1636
             LG
Sbjct: 405  VLG 407



 Score =  436 bits (1120), Expect(2) = 0.0
 Identities = 278/555 (50%), Positives = 342/555 (61%), Gaps = 10/555 (1%)
 Frame = -1

Query: 1636 GRNKKLQGLAASIVKLWEKCEIAKIAIKRGVQNTNSEIMAEELKWLTGGTLLSRDKEFIV 1457
            GRN+KLQGLAA+IVKLWEKCEIAK+A+KRGVQNTNSE+M EELKWLTGGTLLSRD+EFIV
Sbjct: 407  GRNRKLQGLAAAIVKLWEKCEIAKVAVKRGVQNTNSELMVEELKWLTGGTLLSRDREFIV 466

Query: 1456 FYRGKDFLPAAVSSAIEERRKYGINGAKTGKDHD--LNEKEHKHGTLEYAPQNEHHEASD 1283
            FYRGKDFLP+AVSSAIEERRK      K    +    N KE K  T E    + H   ++
Sbjct: 467  FYRGKDFLPSAVSSAIEERRKQVFEEEKRNGFNSSVANAKERKQSTTESVSDDGHAHRNN 526

Query: 1282 KKLKLHSEERKLRHAESAIKRTSSKLSMXXXXXXXXXXXXXXXXXXEIPQQLEIDKEGIT 1103
            +K     E++KL   E+AIKRT+ KL+                   E+PQQ ++DKEGIT
Sbjct: 527  QKGV--QEKKKLTSMEAAIKRTADKLTTALEKKAEAEKLLLELEEDEVPQQSDMDKEGIT 584

Query: 1102 EEERYMLRKVGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMIGSRTIEEVHGIAR 923
            EEER+MLRK+GLRMK FLLLGRRGVFDGTVENMHLHWKYRELVKV+ G + IEEVH IAR
Sbjct: 585  EEERFMLRKIGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKVITGRKNIEEVHQIAR 644

Query: 922  TLEAESGGILVAVERVSKGYAIIVYRGKNYKRPASLRPQTLLSKREAMKRSIEAQRRESL 743
             LEAESGGILVAVERV+KGYAIIVYRGKNY+RPASLRPQTLLSKREAMKRSIEAQRR+SL
Sbjct: 645  MLEAESGGILVAVERVNKGYAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSL 704

Query: 742  KLHVLKLTRNIDELKLRLAEDKDSNDIHMAKDLEHGVVKEQEMNKIYITEDATSYRNSRI 563
            KLHVLKLT+NI+ L+ RLA++++ + I     ++  V        +    DA    N   
Sbjct: 705  KLHVLKLTQNIEALQSRLAKNEEISHIQSPDIVDRQV-------PVMGISDAAGGTN--- 754

Query: 562  DHQSYPXXVAELEMNKIYITEDATSYRNPRIDHQSYPTGHSTEEARGSHGADVTHMDTKG 383
                Y   VA    + I  + DA    +P           S+++   +  +D  H     
Sbjct: 755  ----YQSIVA----SPIEDSGDAAEDTDP-----------SSQKELSNDFSDTDH----- 790

Query: 382  SMDTAMDSVHQQDLGENISLQSEVKGENVFDTSKADLQVKSVLKETKGSLDIKGKDGTVK 203
                  DS  QQ+   N   Q E K E + DT +   Q  S +KE+K   ++     T  
Sbjct: 791  ------DS--QQEFPINPFFQYEGKVEAMGDTIQPQHQSISSIKESKSMFNVNVDQETFG 842

Query: 202  IFRSPDQTSSSATAYVQPHFCDNKAMTS--NVGSREAMLEPSVDK------SRERDSPGT 47
               S +  S S+   V+ HF + ++      V ++  + +P   K      S    S G 
Sbjct: 843  SAVS-ESVSKSSRGEVKIHFSETRSFNKPREVNNKMEVSQPPPVKPQQTLRSTRSRSEGM 901

Query: 46   PFRARRLSNRERLLL 2
              R  +LSNRERLLL
Sbjct: 902  STRRVQLSNRERLLL 916


>ref|XP_006338519.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X2 [Solanum tuberosum]
          Length = 878

 Score =  473 bits (1216), Expect(2) = 0.0
 Identities = 242/363 (66%), Positives = 285/363 (78%), Gaps = 4/363 (1%)
 Frame = -2

Query: 2712 DSGTLPQSAIQRIAEKLRSLGYVEEDK--DNPEKGINYN--GSSPGEIFVPLPTKLPKYR 2545
            D+  LP+SAI+RIA+KLRSLG+VEE K  +  E  ++ N   +SPG+IFVPLPT+LPKYR
Sbjct: 52   DTEALPESAIRRIADKLRSLGFVEEPKNQETQENALSSNPTANSPGQIFVPLPTQLPKYR 111

Query: 2544 VGHTLDQSWSTPENPVPVPGSGNAIQSFHELRHGVFKEKEEDRLRRRGLENGGKAPSLAX 2365
            VGHTLD SWSTPENPVP PG GN+IQ FHELR    KEKE++RL+ +  +   +APSLA 
Sbjct: 112  VGHTLDTSWSTPENPVPQPGLGNSIQKFHELRDEFLKEKEKERLKNKEYKKE-RAPSLAE 170

Query: 2364 XXXXXXXXXXXRSIGIGLKKKLNVGKSGITEGIVNGIHERWRHSELVKIKCEDICRLNMK 2185
                       R++GI L+KKL +GK+GITEGIVNGIHERWR  ELVKI CEDICRLNMK
Sbjct: 171  LTLPAEELRRLRTVGIALRKKLKIGKAGITEGIVNGIHERWRRMELVKITCEDICRLNMK 230

Query: 2184 RTHNLLERKTGGLVIWRSGSNIILYRGADYKYPYFFTDSNSTNDASNEASPDLDMDDGVH 2005
            RTH LLE+KTGGLVIWRSGSNIILYRGADYKYPYF ++ +  N+++ +A+PDL M  G  
Sbjct: 231  RTHELLEKKTGGLVIWRSGSNIILYRGADYKYPYF-SEISFENNSAQDATPDLFM--GTE 287

Query: 2004 DGSDKLSGTHVVKSPGPNALIGISHPHLVKGVGLPNRVRFQLPGEAQLAEEADMLLEGLG 1825
            +     SGT VVK   P+A    S P +++GVG P+RVRF+LPGEA+  EEAD LLEGLG
Sbjct: 288  EHMTNSSGTDVVK---PDASDRKSPPRVIQGVGSPDRVRFELPGEAEHTEEADKLLEGLG 344

Query: 1824 PRFIDWWGYDPLPVDADLLPAIVPGYKRPFRLLPYGVKFKLTNDEMTTLKRLGRPLPCHF 1645
            PRF DWWG +PLP+DADLLPAIVPGYKRPFRLLPYGVK KLTNDEMTTL+RLGRPLPCHF
Sbjct: 345  PRFTDWWGCEPLPIDADLLPAIVPGYKRPFRLLPYGVKPKLTNDEMTTLRRLGRPLPCHF 404

Query: 1644 ALG 1636
             LG
Sbjct: 405  VLG 407



 Score =  419 bits (1078), Expect(2) = 0.0
 Identities = 252/472 (53%), Positives = 309/472 (65%), Gaps = 2/472 (0%)
 Frame = -1

Query: 1636 GRNKKLQGLAASIVKLWEKCEIAKIAIKRGVQNTNSEIMAEELKWLTGGTLLSRDKEFIV 1457
            GRN+KLQGLAA+IVKLWEKCEIAK+A+KRGVQNTNSE+MAEELKWLTGGTLLSRD+EFIV
Sbjct: 407  GRNRKLQGLAAAIVKLWEKCEIAKVAVKRGVQNTNSELMAEELKWLTGGTLLSRDREFIV 466

Query: 1456 FYRGKDFLPAAVSSAIEERRKYGINGAKTGKDHD--LNEKEHKHGTLEYAPQNEHHEASD 1283
            FYRGKDFLP+AVSSAIEERRK      K    +    N KE K  T      + H   ++
Sbjct: 467  FYRGKDFLPSAVSSAIEERRKQVFEEEKRNGFNSSVANAKERKQSTTGSVSDDGHARRNN 526

Query: 1282 KKLKLHSEERKLRHAESAIKRTSSKLSMXXXXXXXXXXXXXXXXXXEIPQQLEIDKEGIT 1103
            +K     E++KL   E+AIKRT+ KL+                   E+PQQ ++DKEGIT
Sbjct: 527  QKGV--QEKKKLTSMEAAIKRTADKLTTALEKKAEAENLLLELEEDEVPQQSDMDKEGIT 584

Query: 1102 EEERYMLRKVGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMIGSRTIEEVHGIAR 923
            EEER+MLRK+GLRMK FLLLGRRGVFDGTVENMHLHWKYRELVKV+ G +TIEEVH IAR
Sbjct: 585  EEERFMLRKIGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKVITGRKTIEEVHQIAR 644

Query: 922  TLEAESGGILVAVERVSKGYAIIVYRGKNYKRPASLRPQTLLSKREAMKRSIEAQRRESL 743
             LEAESGGILVAVE V+KG+AIIVYRGKNY+RPASLRPQTLLSKREAMKRSIEAQRR+SL
Sbjct: 645  MLEAESGGILVAVELVNKGHAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSL 704

Query: 742  KLHVLKLTRNIDELKLRLAEDKDSNDIHMAKDLEHGVVKEQEMNKIYITEDATSYRNSRI 563
            KLHVLKLT+NI+ L+ RLA++++   I  + D+   V ++  +  I      T+Y++S  
Sbjct: 705  KLHVLKLTQNIEALQSRLAKNEEMVHI-QSPDI---VDRQVPVTGISDAAGGTNYQSSSA 760

Query: 562  DHQSYPXXVAELEMNKIYITEDATSYRNPRIDHQSYPTGHSTEEARGSHGADVTHMDTKG 383
                               TED+           +  T  S+++   S  +D  H     
Sbjct: 761  SP-----------------TEDS--------GDAAEDTDPSSQKELSSDSSDTDHNS--- 792

Query: 382  SMDTAMDSVHQQDLGENISLQSEVKGENVFDTSKADLQVKSVLKETKGSLDI 227
                      QQ+   +   Q E K E V DT + + Q  S +KE+K   ++
Sbjct: 793  ----------QQEFPIDPFFQYEGKVEAVGDTIQPEHQSISSIKESKSMFNV 834


>ref|XP_008341495.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
            splicing facilitator CRS1, chloroplastic [Malus
            domestica]
          Length = 1090

 Score =  449 bits (1156), Expect(2) = 0.0
 Identities = 229/363 (63%), Positives = 278/363 (76%), Gaps = 4/363 (1%)
 Frame = -2

Query: 2712 DSGTL-PQSAIQRIAEKLRSLGYVEEDKDNPEKGINYNGSSPGEIFVPLPTKLPKYRVGH 2536
            D+ TL P+SAIQRIAEKLRSLG+ E  + NP++    +  S GEIFVP+P KLPKYRVGH
Sbjct: 56   DTKTLAPKSAIQRIAEKLRSLGFTESTQ-NPDR--QPDKKSAGEIFVPIPEKLPKYRVGH 112

Query: 2535 TLDQSWSTPENPVPVPGSGNAIQSFHELRHGVFKEKEEDRLRRRGLENGGKAPSLAXXXX 2356
            TLD SWSTPENPVP PG+G AI  FHELR  V K+KE +R  R+G   GG+ P+LA    
Sbjct: 113  TLDASWSTPENPVPEPGTGGAIARFHELRREVKKQKELEREERKG--KGGRVPTLAELSL 170

Query: 2355 XXXXXXXXRSIGIGLKKKLNVGKSGITEGIVNGIHERWRHSELVKIKCEDICRLNMKRTH 2176
                     ++G+GL+KKL +GK+GITEGIVNGIHE WR SE+VKI CED+CRLNMKRTH
Sbjct: 171  GKGELRRLTTVGLGLRKKLKIGKAGITEGIVNGIHENWRRSEVVKIVCEDLCRLNMKRTH 230

Query: 2175 NLLERKTGGLVIWRSGSNIILYRGADYKYPYFFTDS---NSTNDASNEASPDLDMDDGVH 2005
            +LLERKTGGLV WR+GS IILYRG +YKYPYF  D+   +S ++A++ A PD  ++DG +
Sbjct: 231  DLLERKTGGLVXWRAGSKIILYRGVNYKYPYFLRDNVRKDSMSEANSIALPDTHINDGGN 290

Query: 2004 DGSDKLSGTHVVKSPGPNALIGISHPHLVKGVGLPNRVRFQLPGEAQLAEEADMLLEGLG 1825
            + S   S   V  +  P+     + P LV+GVGLP RVRFQLPGEAQL+EE D +LEGLG
Sbjct: 291  E-SGTSSKNDVNSAIVPSTSYERAQPALVQGVGLPGRVRFQLPGEAQLSEENDSMLEGLG 349

Query: 1824 PRFIDWWGYDPLPVDADLLPAIVPGYKRPFRLLPYGVKFKLTNDEMTTLKRLGRPLPCHF 1645
            PRF DWWG +PLP+DADLLPAIVPGY++PFRLLPYG+  KLT+DEMTT++RLGRPLPCHF
Sbjct: 350  PRFTDWWGCEPLPIDADLLPAIVPGYRKPFRLLPYGLNSKLTDDEMTTIRRLGRPLPCHF 409

Query: 1644 ALG 1636
            ALG
Sbjct: 410  ALG 412



 Score =  441 bits (1135), Expect(2) = 0.0
 Identities = 279/561 (49%), Positives = 347/561 (61%), Gaps = 16/561 (2%)
 Frame = -1

Query: 1636 GRNKKLQGLAASIVKLWEKCEIAKIAIKRGVQNTNSEIMAEELKWLTGGTLLSRDKEFIV 1457
            GRN+ LQGLAASIVKLWEKCEIAKIA+KRGVQNTNSE+MAEELK LTGGTLL+RD+EFIV
Sbjct: 412  GRNRNLQGLAASIVKLWEKCEIAKIAVKRGVQNTNSEMMAEELKRLTGGTLLARDREFIV 471

Query: 1456 FYRGKDFLPAAVSSAIEERRKYGINGAKTGKDHDLNEKEHKHGTLEYAPQNEHHEASDKK 1277
             YRGKDFLP AVSSAIEERR++ I   ++       + E +       P+N+H    D K
Sbjct: 472  LYRGKDFLPPAVSSAIEERRRHAIRVERSTSVPTRQDLEPRT-----EPENKHGWIBDHK 526

Query: 1276 LKLHSEERKLRHAESAIKRTSSKLSMXXXXXXXXXXXXXXXXXXEIPQQLEIDKEGITEE 1097
            + L S  RKL+  E+A+ RTS KLSM                    PQQ EIDKEGIT+E
Sbjct: 527  MGLPSA-RKLKSTEAAVDRTSIKLSMALEKRVKAEKLLADLENAATPQQPEIDKEGITKE 585

Query: 1096 ERYMLRKVGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMIGSRTIEEVHGIARTL 917
            ERYMLRKVGLRMK FLL+GRRGVFDGT+ENMHLHWKYRELVK++   ++IE VH +A+TL
Sbjct: 586  ERYMLRKVGLRMKPFLLMGRRGVFDGTIENMHLHWKYRELVKIISNEKSIETVHQVAQTL 645

Query: 916  EAESGGILVAVERVSKGYAIIVYRGKNYKRPASLRPQTLLSKREAMKRSIEAQRRESLKL 737
            EAESGGILVAVERVSKGYAIIVYRGKNY RPASLRPQTLL+KREAMKRSIEAQRRESLKL
Sbjct: 646  EAESGGILVAVERVSKGYAIIVYRGKNYSRPASLRPQTLLTKREAMKRSIEAQRRESLKL 705

Query: 736  HVLKLTRNIDELKLRLAEDKDSNDIHMAKDLEHGVVKEQE---MNKIYITEDATSYRNSR 566
            HVLKL  NI ELKL+L EDK+S++ H   +    + ++++   +  I + +      N +
Sbjct: 706  HVLKLNENIAELKLQLDEDKESDNTHSVNESRTQLARDKQEAHVIPISLNDGVAPVVNXQ 765

Query: 565  IDHQ-----SYPXXVAELEMNKIYITEDATSYRNPRIDHQSYPTGHSTE----EARGSHG 413
            +  Q     S+     E E  ++       S  N   +  +  TG S E    E+R S  
Sbjct: 766  LATQQDNMTSFSPTCDEDESGRVEPGSSNESVTNEEDETSTVETGSSNEPVTYESRASSL 825

Query: 412  ADVTHMDTKGSMDTAMDS---VHQQDLGENISLQSEVKGENVFDTSKADLQVKSVLKETK 242
             D+ + + +G   T          +  G    ++ E +   V +   A  Q K +   + 
Sbjct: 826  KDI-NGEVEGFPSTCCPEDVLARNKQEGHATPMKLEDRTGTVVNGQVATQQDKVLTFSSI 884

Query: 241  GSLDIKGK-DGTVKIFRSPDQTSSSATAYVQPHFCDNKAMTSNVGSREAMLEPSVDKSRE 65
               D  GK +  V    S ++ SSSAT  V  H  DN+A  S+     +  EPSV     
Sbjct: 885  WGEDENGKAEPPVSKSFSTNRLSSSAT--VVKHRRDNEARDSSRRPGNSESEPSVPVLVR 942

Query: 64   RDSPGTPFRARRLSNRERLLL 2
            ++    P +A  LSN ERLLL
Sbjct: 943  KNFNERPSKAVHLSNNERLLL 963


>ref|XP_008230670.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Prunus mume]
          Length = 1122

 Score =  447 bits (1149), Expect(2) = 0.0
 Identities = 222/358 (62%), Positives = 270/358 (75%), Gaps = 4/358 (1%)
 Frame = -2

Query: 2697 PQSAIQRIAEKLRSLGYVEE-DKDNPEKGINYNGSSPGEIFVPLPTKLPKYRVGHTLDQS 2521
            P+SAIQRIAEKLRSLG+ E  +K  P+    +     GEIFVPLP +LPKYRVGHTLD S
Sbjct: 57   PKSAIQRIAEKLRSLGFTENNEKPQPQPDTKH----AGEIFVPLPQRLPKYRVGHTLDSS 112

Query: 2520 WSTPENPVPVPGSGNAIQSFHELRHGVFKEKEEDRLRRRGLENGGKAPSLAXXXXXXXXX 2341
            WSTPENPVP PG+G AI  FHELR  V K+KE ++  ++      + P+LA         
Sbjct: 113  WSTPENPVPEPGTGRAIARFHELRREVKKQKELEKTGKKE----ERVPTLAELSLGKGEL 168

Query: 2340 XXXRSIGIGLKKKLNVGKSGITEGIVNGIHERWRHSELVKIKCEDICRLNMKRTHNLLER 2161
                ++GIGL+KKL +GK+GITEGIVNGIHE WR SE+VKI CED+CR+NMKRTH++LER
Sbjct: 169  RRLTTVGIGLRKKLKIGKAGITEGIVNGIHENWRRSEVVKIVCEDLCRMNMKRTHDMLER 228

Query: 2160 KTGGLVIWRSGSNIILYRGADYKYPYFF---TDSNSTNDASNEASPDLDMDDGVHDGSDK 1990
            KTGGLV+WRSGS I+LYRG +YKYPYF     D +ST D S+   PD  ++DG+++ S++
Sbjct: 229  KTGGLVVWRSGSKIVLYRGVNYKYPYFLHDKVDEDSTIDTSHNVLPDARINDGINEISNE 288

Query: 1989 LSGTHVVKSPGPNALIGISHPHLVKGVGLPNRVRFQLPGEAQLAEEADMLLEGLGPRFID 1810
            +    +  +    A      P LVKGVGL +RVRFQLPGEAQL EEAD +LEGLGPRF D
Sbjct: 289  VDSAIIPSTTNERA-----QPMLVKGVGLQDRVRFQLPGEAQLTEEADRMLEGLGPRFTD 343

Query: 1809 WWGYDPLPVDADLLPAIVPGYKRPFRLLPYGVKFKLTNDEMTTLKRLGRPLPCHFALG 1636
            WWGY+PLPVDADLLPAIVPGY++PFRLLPYG+K KLT+DEMTT++RLGRPLPCHFALG
Sbjct: 344  WWGYEPLPVDADLLPAIVPGYRKPFRLLPYGLKPKLTDDEMTTIRRLGRPLPCHFALG 401



 Score =  440 bits (1131), Expect(2) = 0.0
 Identities = 275/593 (46%), Positives = 349/593 (58%), Gaps = 48/593 (8%)
 Frame = -1

Query: 1636 GRNKKLQGLAASIVKLWEKCEIAKIAIKRGVQNTNSEIMAEELKWLTGGTLLSRDKEFIV 1457
            GRN+ LQGLA+SIVKLWEKCEIAKIA+KRGVQNTN+EIMAEELK LTGGTLL+RD+EFIV
Sbjct: 401  GRNRNLQGLASSIVKLWEKCEIAKIAVKRGVQNTNTEIMAEELKRLTGGTLLARDREFIV 460

Query: 1456 FYRGKDFLPAAVSSAIEERRKYGINGAKTGKDHDLNEKEHKHGTLEYAPQNEHHEASDKK 1277
             YRGKDFLP+AVSSAIEERRKY I+  K   +   +    +       P+N+H   +D K
Sbjct: 461  LYRGKDFLPSAVSSAIEERRKYAIHAEKQIAERGTSVTTRQELEPRTEPENKHEWTNDHK 520

Query: 1276 LKLHSEERKLRHAESAIKRTSSKLSMXXXXXXXXXXXXXXXXXXEIPQQLEIDKEGITEE 1097
            + L S +RKL+ AE  + RTS KLSM                   IPQQ E DKEGIT+E
Sbjct: 521  MGLPSAKRKLKSAEVVVNRTSIKLSMALEKKAKAEKLLAELENAAIPQQPETDKEGITKE 580

Query: 1096 ERYMLRKVGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMIGSRTIEEVHGIARTL 917
            ERYMLRKVGLRMK FLL+GRRGVFDGT+ENMHLHWKYRELVK++   ++IE V  +A+TL
Sbjct: 581  ERYMLRKVGLRMKPFLLMGRRGVFDGTIENMHLHWKYRELVKIICNEKSIEAVQQVAQTL 640

Query: 916  EAESGGILVAVERVSKGYAIIVYRGKNYKRPASLRPQTLLSKREAMKRSIEAQRRESLKL 737
            EAESGGILVAVERVSKGYAIIVYRGKNY RPASLRPQTLL+KREAMKRSIEAQRRESLKL
Sbjct: 641  EAESGGILVAVERVSKGYAIIVYRGKNYSRPASLRPQTLLNKREAMKRSIEAQRRESLKL 700

Query: 736  HVLKLTRNIDELKLRLAEDKDSNDIHMAKDLEHGVVKEQE---MNKIYITEDATSYRNSR 566
            HVL+L  NIDELKL L +DK+++++    +  + + ++++   +  + + +   +  N +
Sbjct: 701  HVLRLNENIDELKLLLVKDKEADNMQSVGESRNELARDKQEARVTPVNLNDGMGAVVNGQ 760

Query: 565  IDHQ-----SYPXXVAELEMNKIYITEDATSYRNPRIDHQSYPTGHSTEE---------- 431
            +  Q     S+     E E+ K        S  N   +      G S E           
Sbjct: 761  LATQQDEVISFSSTWDEDEIGKFEPGSSDESVTNEEDEIGKVGPGPSNESVTNETHANFL 820

Query: 430  --------------------ARGSHGADVTHMDTKGSMDTAMD---SVHQQDLGENISLQ 320
                                 RG   A VT M     M T ++   +  Q  +    S+ 
Sbjct: 821  KDTNGEVGDFVSTCFPEDVMGRGKQEAHVTPMKLNDGMGTIVNGQLATQQDKVITFSSIC 880

Query: 319  SEVKGENVFDTSKADLQVKSVLKETKGSL--DIKGKDGTVKIFRSPDQT-----SSSATA 161
             E +   V   S ++     V  ET  +L  D+ G++G       P+       +SSAT 
Sbjct: 881  CEDENGEVEPVSSSE----PVTNETHANLFKDVNGEEGVSISTSFPEDAMSNGLNSSATV 936

Query: 160  YVQPHFCDNKAMTSNVGSREAMLEPSVDKSRERDSPGTPFRARRLSNRERLLL 2
              Q    + +A  S+     +  +PSV     +D  G P ++  LSN ERLLL
Sbjct: 937  DKQHRVSEIEAKDSSGRFGNSESKPSVPVMVRKDFNGRPSKSVHLSNGERLLL 989


>ref|XP_007217083.1| hypothetical protein PRUPE_ppa000515mg [Prunus persica]
            gi|462413233|gb|EMJ18282.1| hypothetical protein
            PRUPE_ppa000515mg [Prunus persica]
          Length = 1117

 Score =  451 bits (1159), Expect(2) = 0.0
 Identities = 224/358 (62%), Positives = 272/358 (75%), Gaps = 4/358 (1%)
 Frame = -2

Query: 2697 PQSAIQRIAEKLRSLGYVEE-DKDNPEKGINYNGSSPGEIFVPLPTKLPKYRVGHTLDQS 2521
            P+SAIQRIAEKLRSLG+ E  +K  P+    Y     GEIFVPLP +LPKYRVGHTLD S
Sbjct: 57   PKSAIQRIAEKLRSLGFTENNEKPQPQPDTKY----AGEIFVPLPQRLPKYRVGHTLDSS 112

Query: 2520 WSTPENPVPVPGSGNAIQSFHELRHGVFKEKEEDRLRRRGLENGGKAPSLAXXXXXXXXX 2341
            WSTPENPVP PG+G AI  FHELR  V K+KE ++  ++      + P+LA         
Sbjct: 113  WSTPENPVPEPGTGRAIARFHELRREVKKQKELEKTGKKE----ERVPTLAELSLGKGEL 168

Query: 2340 XXXRSIGIGLKKKLNVGKSGITEGIVNGIHERWRHSELVKIKCEDICRLNMKRTHNLLER 2161
                ++GIGL+KKL +GK+GITEGIVNGIHE WR SE+VKI CED+CR+NMKRTH++LER
Sbjct: 169  RRLTTVGIGLRKKLKIGKAGITEGIVNGIHENWRRSEVVKIVCEDLCRMNMKRTHDMLER 228

Query: 2160 KTGGLVIWRSGSNIILYRGADYKYPYFF---TDSNSTNDASNEASPDLDMDDGVHDGSDK 1990
            KTGGLV+WRSGS I+LYRG +YKYPYF     D +ST D S+ A PD  ++DG+++ S++
Sbjct: 229  KTGGLVVWRSGSKIVLYRGVNYKYPYFLRDKVDEDSTIDTSHNALPDAHINDGINEISNE 288

Query: 1989 LSGTHVVKSPGPNALIGISHPHLVKGVGLPNRVRFQLPGEAQLAEEADMLLEGLGPRFID 1810
            ++   +  +    A      P LVKGVGL +RVRFQLPGEAQL EEAD +LEGLGPRF D
Sbjct: 289  VNSAIIPSTTNERA-----QPMLVKGVGLQDRVRFQLPGEAQLTEEADHMLEGLGPRFTD 343

Query: 1809 WWGYDPLPVDADLLPAIVPGYKRPFRLLPYGVKFKLTNDEMTTLKRLGRPLPCHFALG 1636
            WWGY+PLPVDADLLPAIVPGY++PFRLLPYG+K KLT+DEMTT++RLGRPLPCHFALG
Sbjct: 344  WWGYEPLPVDADLLPAIVPGYRKPFRLLPYGLKPKLTDDEMTTIRRLGRPLPCHFALG 401



 Score =  434 bits (1116), Expect(2) = 0.0
 Identities = 266/587 (45%), Positives = 342/587 (58%), Gaps = 42/587 (7%)
 Frame = -1

Query: 1636 GRNKKLQGLAASIVKLWEKCEIAKIAIKRGVQNTNSEIMAEELKWLTGGTLLSRDKEFIV 1457
            GRN+ LQGLA+SIVKLWEKCEIAKIA+KRGVQNTN+EIMAEELK LTGGTLL+RD+EFIV
Sbjct: 401  GRNRNLQGLASSIVKLWEKCEIAKIAVKRGVQNTNTEIMAEELKRLTGGTLLARDREFIV 460

Query: 1456 FYRGKDFLPAAVSSAIEERRKYGINGAKTGKDHDLNEKEHKHGTLEYAPQNEHHEASDKK 1277
             YRGKDFLP AVSSAIEERRKY I+  K   +H  +    +       P+N+H   +D K
Sbjct: 461  LYRGKDFLPPAVSSAIEERRKYAIHAEKQIAEHGTSVTTRQELEPRTEPENKHEWTNDHK 520

Query: 1276 LKLHSEERKLRHAESAIKRTSSKLSMXXXXXXXXXXXXXXXXXXEIPQQLEIDKEGITEE 1097
            + L S +RKL+ AE  + RTS KLSM                   IPQQ EIDKEGIT+E
Sbjct: 521  MGLPSAKRKLKSAEVVVNRTSIKLSMALEKKAKAEKLLAELENAAIPQQPEIDKEGITKE 580

Query: 1096 ERYMLRKVGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMIGSRTIEEVHGIARTL 917
            ERYMLRKVGLRMK FLL+GRRGVFDGT+ENMHLHWKYRELVK++   ++IE V  +A+TL
Sbjct: 581  ERYMLRKVGLRMKPFLLMGRRGVFDGTIENMHLHWKYRELVKIICNEKSIEAVQQVAQTL 640

Query: 916  EAESGGILVAVERVSKGYAIIVYRGKNYKRPASLRPQTLLSKREAMKRSIEAQRRESLKL 737
            EAESGGILVAVERVSKGYAIIVYRGKNY RPASLRPQTLL+KREAMKRSIEAQRRESLKL
Sbjct: 641  EAESGGILVAVERVSKGYAIIVYRGKNYSRPASLRPQTLLNKREAMKRSIEAQRRESLKL 700

Query: 736  HVLKLTRNIDELKLRLAEDKDSNDIHMAKDLEHGVVKEQE---MNKIYITEDATSYRNSR 566
            HVL+L  NIDELKL L +DK+++++    +  + + ++++   +  + + +   +  N +
Sbjct: 701  HVLRLNENIDELKLLLVKDKEADNLQSVGESRNELARDKQEAHVTPVNLNDGMGAVVNGQ 760

Query: 565  IDHQ-----SYPXXVAELEMNKIYITEDATSYRNPRIDHQSYPTGHSTEEARGSHGADVT 401
            +  Q     S+     E E+ K        S  N   +      G S E       A+  
Sbjct: 761  LATQQDEVISFSSTWDEDEIGKFKPGSSNESVTNEEDEIGKVEPGPSNESVTNETPANFL 820

Query: 400  HMDTKGSMDTAMDSVHQQD----------------------------------LGENISL 323
              DT G +   + +   +D                                  +G  ++ 
Sbjct: 821  -KDTNGEVGDFVSTCFPEDVMPAGVISEIVHVLFFKGRGKQEAHVTPMKLNDGMGTIVNG 879

Query: 322  QSEVKGENVFDTSKADLQVKSVLKETKGSLDIKGKDGTVKIFRSPDQTSSSATAYVQPHF 143
            Q   + + V   S    + ++   E   S +    +    +FR  +     + +   P  
Sbjct: 880  QLATQQDKVITFSSICCEDENGEVEPISSSEPVTNETHANLFRDVNGEEGVSISTSFPED 939

Query: 142  CDNKAMTSNVGSREAMLEPSVDKSRERDSPGTPFRARRLSNRERLLL 2
               K  +   G+ E+  EPSV     +D    P ++  LSN ERLLL
Sbjct: 940  AMAKDSSGRFGNSES--EPSVPVMVRKDFNERPLKSVHLSNGERLLL 984


>ref|XP_008230671.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Prunus mume]
          Length = 1109

 Score =  447 bits (1149), Expect(2) = 0.0
 Identities = 222/358 (62%), Positives = 270/358 (75%), Gaps = 4/358 (1%)
 Frame = -2

Query: 2697 PQSAIQRIAEKLRSLGYVEE-DKDNPEKGINYNGSSPGEIFVPLPTKLPKYRVGHTLDQS 2521
            P+SAIQRIAEKLRSLG+ E  +K  P+    +     GEIFVPLP +LPKYRVGHTLD S
Sbjct: 57   PKSAIQRIAEKLRSLGFTENNEKPQPQPDTKH----AGEIFVPLPQRLPKYRVGHTLDSS 112

Query: 2520 WSTPENPVPVPGSGNAIQSFHELRHGVFKEKEEDRLRRRGLENGGKAPSLAXXXXXXXXX 2341
            WSTPENPVP PG+G AI  FHELR  V K+KE ++  ++      + P+LA         
Sbjct: 113  WSTPENPVPEPGTGRAIARFHELRREVKKQKELEKTGKKE----ERVPTLAELSLGKGEL 168

Query: 2340 XXXRSIGIGLKKKLNVGKSGITEGIVNGIHERWRHSELVKIKCEDICRLNMKRTHNLLER 2161
                ++GIGL+KKL +GK+GITEGIVNGIHE WR SE+VKI CED+CR+NMKRTH++LER
Sbjct: 169  RRLTTVGIGLRKKLKIGKAGITEGIVNGIHENWRRSEVVKIVCEDLCRMNMKRTHDMLER 228

Query: 2160 KTGGLVIWRSGSNIILYRGADYKYPYFF---TDSNSTNDASNEASPDLDMDDGVHDGSDK 1990
            KTGGLV+WRSGS I+LYRG +YKYPYF     D +ST D S+   PD  ++DG+++ S++
Sbjct: 229  KTGGLVVWRSGSKIVLYRGVNYKYPYFLHDKVDEDSTIDTSHNVLPDARINDGINEISNE 288

Query: 1989 LSGTHVVKSPGPNALIGISHPHLVKGVGLPNRVRFQLPGEAQLAEEADMLLEGLGPRFID 1810
            +    +  +    A      P LVKGVGL +RVRFQLPGEAQL EEAD +LEGLGPRF D
Sbjct: 289  VDSAIIPSTTNERA-----QPMLVKGVGLQDRVRFQLPGEAQLTEEADRMLEGLGPRFTD 343

Query: 1809 WWGYDPLPVDADLLPAIVPGYKRPFRLLPYGVKFKLTNDEMTTLKRLGRPLPCHFALG 1636
            WWGY+PLPVDADLLPAIVPGY++PFRLLPYG+K KLT+DEMTT++RLGRPLPCHFALG
Sbjct: 344  WWGYEPLPVDADLLPAIVPGYRKPFRLLPYGLKPKLTDDEMTTIRRLGRPLPCHFALG 401



 Score =  436 bits (1120), Expect(2) = 0.0
 Identities = 275/588 (46%), Positives = 348/588 (59%), Gaps = 43/588 (7%)
 Frame = -1

Query: 1636 GRNKKLQGLAASIVKLWEKCEIAKIAIKRGVQNTNSEIMAEELKWLTGGTLLSRDKEFIV 1457
            GRN+ LQGLA+SIVKLWEKCEIAKIA+KRGVQNTN+EIMAEELK LTGGTLL+RD+EFIV
Sbjct: 401  GRNRNLQGLASSIVKLWEKCEIAKIAVKRGVQNTNTEIMAEELKRLTGGTLLARDREFIV 460

Query: 1456 FYRGKDFLPAAVSSAIEERRKYGINGAKTGKDHDLNEKEHKHGTLEYAPQNEHHEASDKK 1277
             YRGKDFLP+AVSSAIEERRKY I+  K   +   +    +       P+N+H   +D K
Sbjct: 461  LYRGKDFLPSAVSSAIEERRKYAIHAEKQIAERGTSVTTRQELEPRTEPENKHEWTNDHK 520

Query: 1276 LKLHSEERKLRHAESAIKRTSSKLSMXXXXXXXXXXXXXXXXXXEIPQQLEIDKEGITEE 1097
            + L S +RKL+ AE  + RTS KLSM                   IPQQ E DKEGIT+E
Sbjct: 521  MGLPSAKRKLKSAEVVVNRTSIKLSMALEKKAKAEKLLAELENAAIPQQPETDKEGITKE 580

Query: 1096 ERYMLRKVGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMIGSRTIEEVHGIARTL 917
            ERYMLRKVGLRMK FLL+GRRGVFDGT+ENMHLHWKYRELVK++   ++IE V  +A+TL
Sbjct: 581  ERYMLRKVGLRMKPFLLMGRRGVFDGTIENMHLHWKYRELVKIICNEKSIEAVQQVAQTL 640

Query: 916  EAESGGILVAVERVSKGYAIIVYRGKNYKRPASLRPQTLLSKREAMKRSIEAQRRESLKL 737
            EAESGGILVAVERVSKGYAIIVYRGKNY RPASLRPQTLL+KREAMKRSIEAQRRESLKL
Sbjct: 641  EAESGGILVAVERVSKGYAIIVYRGKNYSRPASLRPQTLLNKREAMKRSIEAQRRESLKL 700

Query: 736  HVLKLTRNIDELKLRLAEDKDSNDIHMAKDLEHGVVKEQE---MNKIYITEDATSYRNSR 566
            HVL+L  NIDELKL L +DK+++++    +  + + ++++   +  + + +   +  N +
Sbjct: 701  HVLRLNENIDELKLLLVKDKEADNMQSVGESRNELARDKQEARVTPVNLNDGMGAVVNGQ 760

Query: 565  IDHQ-----SYPXXVAELEMNKIYITEDATSYRNPRIDHQSYPTGHSTEE---------- 431
            +  Q     S+     E E+ K        S  N   +      G S E           
Sbjct: 761  LATQQDEVISFSSTWDEDEIGKFEPGSSDESVTNEEDEIGKVGPGPSNESVTNETHANFL 820

Query: 430  --------------------ARGSHGADVTHMDTKGSMDTAMD---SVHQQDLGENISLQ 320
                                 RG   A VT M     M T ++   +  Q  +    S+ 
Sbjct: 821  KDTNGEVGDFVSTCFPEDVMGRGKQEAHVTPMKLNDGMGTIVNGQLATQQDKVITFSSIC 880

Query: 319  SEVKGENVFDTSKADLQVKSVLKETKGSL--DIKGKDGTVKIFRSPDQTSSSATAYVQPH 146
             E +   V   S ++     V  ET  +L  D+ G++G V I      TS    A  +  
Sbjct: 881  CEDENGEVEPVSSSE----PVTNETHANLFKDVNGEEG-VSI-----STSFPEDAMHRVS 930

Query: 145  FCDNKAMTSNVGSREAMLEPSVDKSRERDSPGTPFRARRLSNRERLLL 2
              + K  +   G+ E+  +PSV     +D  G P ++  LSN ERLLL
Sbjct: 931  EIEAKDSSGRFGNSES--KPSVPVMVRKDFNGRPSKSVHLSNGERLLL 976


>ref|XP_007031356.1| CRM family member 2, putative isoform 2 [Theobroma cacao]
            gi|508710385|gb|EOY02282.1| CRM family member 2, putative
            isoform 2 [Theobroma cacao]
          Length = 1045

 Score =  449 bits (1154), Expect(2) = 0.0
 Identities = 228/362 (62%), Positives = 269/362 (74%), Gaps = 6/362 (1%)
 Frame = -2

Query: 2703 TLPQSAIQRIAEKLRSLGYVEEDKDNPEKGINYNGSSPGEIFVPLPTKLPKYRVGHTLDQ 2524
            TLPQSAIQRIA+KLRSLG+ E     PE        SPGEIFVPLP K+PKYRVGHT+D 
Sbjct: 56   TLPQSAIQRIADKLRSLGFSETQNPEPESEPGSGSDSPGEIFVPLPEKIPKYRVGHTIDT 115

Query: 2523 SWSTPENPVPVPGSG--NAIQSFHEL---RHGVFKEKEEDRLRRRGLENGGKAPSLAXXX 2359
            SWSTPENPVP PGSG  + +  F E+   R  V + KEEDR            PSLA   
Sbjct: 116  SWSTPENPVPDPGSGPGSLMARFREMKRERRKVGRVKEEDRA----------VPSLAELK 165

Query: 2358 XXXXXXXXXRSIGIGLKKKLNVGKSGITEGIVNGIHERWRHSELVKIKCEDICRLNMKRT 2179
                     R++GIG K+KL +GK+GITEGIVNGIHERWR SE+VKI CEDIC++NMKRT
Sbjct: 166  LSAAELRRLRTVGIGEKRKLKLGKAGITEGIVNGIHERWRRSEVVKIVCEDICKMNMKRT 225

Query: 2178 HNLLERKTGGLVIWRSGSNIILYRGADYKYPYFFTDSNSTNDASNEASPDLDMDD-GVHD 2002
            H +LERKTGGLV+WRSGS IILYRGA+Y+YPYF  D  +T+D S+ ASPD +MD+  +H+
Sbjct: 226  HEVLERKTGGLVVWRSGSKIILYRGANYRYPYFLADKIATDDTSSNASPDTNMDNVELHE 285

Query: 2001 GSDKLSGTHVVKSPGPNALIGISHPHLVKGVGLPNRVRFQLPGEAQLAEEADMLLEGLGP 1822
                 S  +  K+  PNA   ++ P +V+GVG P+RVRFQLPGEA+L EEA+ LL+GLGP
Sbjct: 286  TESCSSEINSAKTAIPNATNKMTKPMIVQGVGSPSRVRFQLPGEAELVEEANHLLDGLGP 345

Query: 1821 RFIDWWGYDPLPVDADLLPAIVPGYKRPFRLLPYGVKFKLTNDEMTTLKRLGRPLPCHFA 1642
            RF DWWGY+PLPVD DLLPAI+PGY+RPFRLLPYGVK  LTNDEMTTL+RLGRPLPCHF 
Sbjct: 346  RFTDWWGYEPLPVDGDLLPAIIPGYRRPFRLLPYGVKPILTNDEMTTLRRLGRPLPCHFV 405

Query: 1641 LG 1636
            LG
Sbjct: 406  LG 407



 Score =  419 bits (1077), Expect(2) = 0.0
 Identities = 260/558 (46%), Positives = 337/558 (60%), Gaps = 13/558 (2%)
 Frame = -1

Query: 1636 GRNKKLQGLAASIVKLWEKCEIAKIAIKRGVQNTNSEIMAEELKWLTGGTLLSRDKEFIV 1457
            GRN+KLQGLAASIVK WEKCEIAK+A+KRGVQNTNSE+MAEELKWLTGGTLLSRDK+FIV
Sbjct: 407  GRNRKLQGLAASIVKHWEKCEIAKVAVKRGVQNTNSELMAEELKWLTGGTLLSRDKDFIV 466

Query: 1456 FYRGKDFLPAAVSSAIEERRKYGINGAKTGKDHDLNEKEHKHGTLE---YAPQNEHHEAS 1286
             YRGKDFLP+AVSSAIEERR++ I+  K G +   ++K  +   +E      +++ + A 
Sbjct: 467  LYRGKDFLPSAVSSAIEERRRHVIHVEKQGAECSKSKKTAQEVIVEDTKSGSESKINSAK 526

Query: 1285 DKKLKLHSEERKLRHAESAIKRTSSKLSMXXXXXXXXXXXXXXXXXXEIPQQLEIDKEGI 1106
            D++     + + ++ AE+AI++T  KLSM                  EIPQQ EIDKEGI
Sbjct: 527  DQRSNFFGDPKNMKSAEAAIRKTDVKLSMALEKKAKAEKLLAELEQAEIPQQSEIDKEGI 586

Query: 1105 TEEERYMLRKVGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMIGSRTIEEVHGIA 926
            T+EERYMLRKVGLRMK FLLLGRRGVFDGTVENMHLHWKYRELVK++     +E VH +A
Sbjct: 587  TQEERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIISKETNVEAVHQLA 646

Query: 925  RTLEAESGGILVAVERVSKGYAIIVYRGKNYKRPASLRPQTLLSKREAMKRSIEAQRRES 746
            R LEAESGGILVAVERVSKGYAIIVYRGKNY+RP SLRPQTLL+KR+AMKRS+E QRR+S
Sbjct: 647  RMLEAESGGILVAVERVSKGYAIIVYRGKNYERPTSLRPQTLLTKRQAMKRSLEEQRRKS 706

Query: 745  LKLHVLKLTRNIDELKLRLAEDKDSNDIHMAKDLEHGVVKEQEMNKIYITEDATSYRNSR 566
            LKLH+L LTRN+++L+ +L  DK++N +                                
Sbjct: 707  LKLHILNLTRNVNDLEHQLVVDKEANSMQT------------------------------ 736

Query: 565  IDHQSYPXXVAELEMNKIYITEDATSYRNPRIDHQSYPTGHSTEEARGSHGADVTHMDTK 386
            ++  S P    ELE      T  +  Y    I+  +   GH   E+R   G++ T M   
Sbjct: 737  VEQSSLPLVQEELE------TLQSVEYTGSVIECPASSGGHV--ESRDKDGSESTSMKND 788

Query: 385  GSMDTA----------MDSVHQQDLGENISLQSEVKGENVFDTSKADLQVKSVLKETKGS 236
              + T           M+     D  EN   +SE   E+V   S A  +++++  + +  
Sbjct: 789  KMVATISIRQPSKQEFMEPSSIHDGFENHKTESEFSAESVNRKSHAT-ELRALHTQVE-M 846

Query: 235  LDIKGKDGTVKIFRSPDQTSSSATAYVQPHFCDNKAMTSNVGSREAMLEPSVDKSRERDS 56
            +D    D  +      ++   S     +    +N  M S V S  +ML+ S+  + E  S
Sbjct: 847  VDTSYPDNLM------EEIDDSGAINAEHGVSNNGPMESLVESA-SMLDVSISSAVENVS 899

Query: 55   PGTPFRARRLSNRERLLL 2
                  A  LSN++RLLL
Sbjct: 900  NKMASTANFLSNKDRLLL 917


>ref|XP_012082331.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X3 [Jatropha curcas]
          Length = 1097

 Score =  435 bits (1118), Expect(2) = 0.0
 Identities = 223/366 (60%), Positives = 266/366 (72%), Gaps = 7/366 (1%)
 Frame = -2

Query: 2712 DSGTLPQSAIQRIAEKLRSLGYVEEDKDNPE---KGINYNGSSPGEIFVPLPTKLPKYRV 2542
            DS TLP SAI+RIA+KLRSLG+ E +   PE     +       GEIF+PLP +LPKYRV
Sbjct: 51   DSKTLPHSAIKRIADKLRSLGFTEHNPKLPETLNSELERETKQVGEIFIPLPNQLPKYRV 110

Query: 2541 GHTLDQSWSTPENPVPVPGSGNAIQSFHELRHGVFKEKEEDRLRRRGLENGGKAPSLAXX 2362
            GHTLD SWSTPENPVP+PG+G AI  +HELR  V KE+E  +          K P+LA  
Sbjct: 111  GHTLDPSWSTPENPVPIPGAGKAIARYHELRKEVKKEREAKKREP-------KVPTLAVL 163

Query: 2361 XXXXXXXXXXRSIGIGLKKKLNVGKSGITEGIVNGIHERWRHSELVKIKCEDICRLNMKR 2182
                      R+IGI  K+KL VGK+GITEGIVNGIHERWR +E+VKI CED+CR+NMKR
Sbjct: 164  SLPAEELRRLRTIGIAEKRKLKVGKAGITEGIVNGIHERWRRAEVVKIVCEDLCRMNMKR 223

Query: 2181 THNLLERKTGGLVIWRSGSNIILYRGADYKYPYFFTDSNSTNDASNEASPDLDMDDGVHD 2002
            TH++LERKTGGLV+WRSGS I+LYRG +YKYPYF    +  N  +NE S D   D+ V  
Sbjct: 224  THDMLERKTGGLVVWRSGSKIVLYRGVNYKYPYF----SPNNITANETSSDAVHDNHVDC 279

Query: 2001 GSDKL----SGTHVVKSPGPNALIGISHPHLVKGVGLPNRVRFQLPGEAQLAEEADMLLE 1834
              DK+    S  + ++S G +    +  P LV+GVG P+RVRF+LPGEAQLAEE D LL+
Sbjct: 280  EDDKMGSCSSRANSLRSSGSSETNKMVRPTLVQGVGSPDRVRFELPGEAQLAEEIDSLLD 339

Query: 1833 GLGPRFIDWWGYDPLPVDADLLPAIVPGYKRPFRLLPYGVKFKLTNDEMTTLKRLGRPLP 1654
            GLGPRF DWWGY+PLPVDADLLPAIVPGY++PFRLLPYGV  KLT+DEMT L+RLGRPLP
Sbjct: 340  GLGPRFTDWWGYEPLPVDADLLPAIVPGYRKPFRLLPYGVMPKLTDDEMTALRRLGRPLP 399

Query: 1653 CHFALG 1636
            CHFALG
Sbjct: 400  CHFALG 405



 Score =  432 bits (1112), Expect(2) = 0.0
 Identities = 272/574 (47%), Positives = 354/574 (61%), Gaps = 29/574 (5%)
 Frame = -1

Query: 1636 GRNKKLQGLAASIVKLWEKCEIAKIAIKRGVQNTNSEIMAEELKWLTGGTLLSRDKEFIV 1457
            GRN+KLQGLAASIVKLWEKCEIAKIA+KRGVQNTNSE+MAEELKWLTGGTLLSRD+EFIV
Sbjct: 405  GRNRKLQGLAASIVKLWEKCEIAKIAVKRGVQNTNSEMMAEELKWLTGGTLLSRDREFIV 464

Query: 1456 FYRGKDFLPAAVSSAIEERRKYGINGAKTGKDHDL------NEKEHKHGTLEYAPQNEHH 1295
             YRGKDFLP+AVSS I+ERRKY I+G K  +   +        ++ K  T+     +E +
Sbjct: 465  LYRGKDFLPSAVSSVIKERRKYLIHGDKQRRHQSIAGETLKEAEDIKIETISSGSNDEFN 524

Query: 1294 EASDKKLKLHSEERKLRHAESAIKRTSSKLSMXXXXXXXXXXXXXXXXXXEIPQQLEIDK 1115
              +++   L  +++KLR  E+AIKRTS +LSM                  E+PQQ  IDK
Sbjct: 525  SDNEQSSDL-LKDKKLRSLEAAIKRTSIRLSMALENKAKAEKLLAELENLEMPQQPAIDK 583

Query: 1114 EGITEEERYMLRKVGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMIGSRTIEEVH 935
            EGITEEERYMLRK+GL+MK FLLLGRRGVFDGT+ENMHLHWKYRELVK++   R++E  +
Sbjct: 584  EGITEEERYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICKERSLEAAY 643

Query: 934  GIARTLEAESGGILVAVERVSKGYAIIVYRGKNYKRPASLRPQTLLSKREAMKRSIEAQR 755
             +ARTLE ESGGILVAVERVSKGYAI+VYRGKNY+RPA LRP TLLSKREA+KRS+EAQR
Sbjct: 644  EVARTLEVESGGILVAVERVSKGYAIVVYRGKNYRRPARLRPPTLLSKREALKRSLEAQR 703

Query: 754  RESLKLHVLKLTRNIDELKLRLAEDKDSNDIHMAKDLEHGVVKEQEMNKIYITEDATSYR 575
            RESLKLHVLKLTRN+++LKL+LA+D++++  H   +       +   N     +D  + R
Sbjct: 704  RESLKLHVLKLTRNVNDLKLKLAKDEEAHSKHSFDETRDDDEADSNSNS-NSNDDGKNIR 762

Query: 574  NSRIDHQSYPXXVAELEMNKIYITEDATS---------------YRNPRIDHQSYPTGHS 440
             ++   Q+ P  +    +N +  +E  +S                 +  +D  S+P    
Sbjct: 763  PAQWADQTDPSLL--FSVNAMGKSESKSSMESVGLEAHESLFATMNDGAVDSTSFPVNFE 820

Query: 439  TEEARGSHGADVTHMDTKGSMDTAMDSVHQQDLGENISLQSEVKGENVFDTSKADLQVKS 260
            T++        + + D  G      +  +Q D     SL  +V G      S+    V+S
Sbjct: 821  TKDNHKGDSNSIANDDGDGIQPA--EQANQTD----PSLLFDVNG---IGKSEPQSSVES 871

Query: 259  VLKETKGSLDIKGKDGTVKIFRSP--------DQTSSSATAYVQPHFCDNKAMTSNVGSR 104
            V  E   SL I   DG VK    P        ++  S+  A  +     N+ + S V S 
Sbjct: 872  VSIEACDSLFI--NDGAVKSTSFPVNFTGYQLEKRRSAPLANAEHCMPGNEMIRSKVES- 928

Query: 103  EAMLEPSVDKSRERDSPGTPFRARRLSNRERLLL 2
             + +E SV  S E++   TP +   LSNR+RL+L
Sbjct: 929  TSEVEESVSISVEKE---TPPKVIHLSNRDRLML 959


>ref|XP_012483758.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Gossypium raimondii]
            gi|763766497|gb|KJB33712.1| hypothetical protein
            B456_006G027700 [Gossypium raimondii]
          Length = 1023

 Score =  434 bits (1115), Expect(2) = 0.0
 Identities = 224/365 (61%), Positives = 268/365 (73%), Gaps = 6/365 (1%)
 Frame = -2

Query: 2712 DSGTLPQSAIQRIAEKLRSLGYVEEDKDNPEKGINYNGSSPGEIFVPLPTKLPKYRVGHT 2533
            ++  LPQSAIQRIA+KLRSLG+ E     PE         PGEIFVPLP KLPKYRVGHT
Sbjct: 50   ENQALPQSAIQRIADKLRSLGFSETPNPQPES--ESGSGCPGEIFVPLPEKLPKYRVGHT 107

Query: 2532 LDQSWSTPENPVPVPGS--GNAIQSFHEL---RHGVFKEKEEDRLRRRGLENGGKAPSLA 2368
            +D SWSTPENPVP PGS  G+ +  F ++   R  + + KEE+R+           PSLA
Sbjct: 108  IDSSWSTPENPVPDPGSDPGSLMVRFRDMKRERKKMGRVKEEERV----------VPSLA 157

Query: 2367 XXXXXXXXXXXXRSIGIGLKKKLNVGKSGITEGIVNGIHERWRHSELVKIKCEDICRLNM 2188
                        R++GIG K+KL VGK+GITEGIVNGIHERWR SE+V+I CEDIC++NM
Sbjct: 158  ELKLSAAELKRLRTVGIGEKRKLKVGKAGITEGIVNGIHERWRKSEVVRIVCEDICKMNM 217

Query: 2187 KRTHNLLERKTGGLVIWRSGSNIILYRGADYKYPYFFTDSNSTNDASNEASPDLDMDDGV 2008
            KRTH +LERKTGGLVIWRSGS IILYRGA+YKYPYF  D   T+D+S+ AS D ++D+  
Sbjct: 218  KRTHEVLERKTGGLVIWRSGSKIILYRGANYKYPYFSADKIGTHDSSSNASSDTNVDNKE 277

Query: 2007 HDGSDKLSGT-HVVKSPGPNALIGISHPHLVKGVGLPNRVRFQLPGEAQLAEEADMLLEG 1831
             D ++  S   + VK+  P A   ++   L++GVG P+RVRFQLPGEA+L  EAD LL+G
Sbjct: 278  LDETESCSSEFNGVKTSTPKATDKMTKRALIQGVGSPSRVRFQLPGEAELVAEADRLLDG 337

Query: 1830 LGPRFIDWWGYDPLPVDADLLPAIVPGYKRPFRLLPYGVKFKLTNDEMTTLKRLGRPLPC 1651
            LGPRF DWWGY+PLPVD DLLPAI+PGY+RPFRLLPYGVK  LTNDEMTTL+RLGRPLPC
Sbjct: 338  LGPRFTDWWGYEPLPVDGDLLPAIIPGYRRPFRLLPYGVKSLLTNDEMTTLRRLGRPLPC 397

Query: 1650 HFALG 1636
            HFALG
Sbjct: 398  HFALG 402



 Score =  427 bits (1099), Expect(2) = 0.0
 Identities = 254/476 (53%), Positives = 312/476 (65%), Gaps = 14/476 (2%)
 Frame = -1

Query: 1636 GRNKKLQGLAASIVKLWEKCEIAKIAIKRGVQNTNSEIMAEELKWLTGGTLLSRDKEFIV 1457
            GRN+KLQGLAASI+KLWEKCEIAKIA+KRGVQNTNSE+MAEELKWLTGGTLLSRDK+FIV
Sbjct: 402  GRNRKLQGLAASIIKLWEKCEIAKIAVKRGVQNTNSELMAEELKWLTGGTLLSRDKDFIV 461

Query: 1456 FYRGKDFLPAAVSSAIEERRKYGINGA-KTGKDHDLNEKEHKHGTLEYAPQNEHHEASDK 1280
             YRGKDFLP+AVSSAIEERRK+ I+   ++GK     ++ H  G  + A +N+ + A D+
Sbjct: 462  LYRGKDFLPSAVSSAIEERRKHVIHAENQSGKTM---QEVHGEGA-KIASENDINSAKDR 517

Query: 1279 KLKLHSEERKLRHAESAIKRTSSKLSMXXXXXXXXXXXXXXXXXXEIPQQLEIDKEGITE 1100
            K  + S  + L  AE+ IKRTSSKLSM                   IPQQ EIDKEGIT 
Sbjct: 518  KSDVFSIRKNLNSAEATIKRTSSKLSMALEKKAKAEKLLAELEQEVIPQQSEIDKEGITR 577

Query: 1099 EERYMLRKVGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMIGSRTIEEVHGIART 920
            EERYMLRKVGLRMK FLLLGRRGVFDGTVENMHLHWKYRELVK++     +E VH  A+ 
Sbjct: 578  EERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIISKETNVEAVHQEAQI 637

Query: 919  LEAESGGILVAVERVSKGYAIIVYRGKNYKRPASLRPQTLLSKREAMKRSIEAQRRESLK 740
            LEAESGGILVAVERVSKGYAII YRGKNY+RP  LRPQTLL+KREAMKRS+E QRR+SLK
Sbjct: 638  LEAESGGILVAVERVSKGYAIIFYRGKNYERPTCLRPQTLLTKREAMKRSLEEQRRKSLK 697

Query: 739  LHVLKLTRNIDELKLRLAEDKDSNDIHMAKDLEHGVVKEQEMNKIYITEDATSYRNSRID 560
            LH+LKLTRNIDELK +L  DK++++  +A D       E+EM      E   S + +R D
Sbjct: 698  LHILKLTRNIDELKHQLVVDKEASNT-LAADQSRLPSVEEEM------ETLQSVKCARSD 750

Query: 559  HQSYPXXVAELEMNKIYITEDATSYRNPRIDHQ---SYPTGHSTEEARGSHGADVTHMD- 392
             + +      LE        ++TS +N R+      S P+     E    H     H   
Sbjct: 751  IEYHASPEGHLEAKD---KSESTSMKNDRMVAAVSISEPSEQVLVEPSSIHDGVENHKTE 807

Query: 391  --------TKGSMDTAMDSVHQQ-DLGENISLQSEVKGENVFDTSKADLQVKSVLK 251
                     +   +T + ++H Q ++ E+ S    +  EN ++    +  V+S  K
Sbjct: 808  PEFSSESVNRRKHNTELRALHSQFEMVESSSHHDNLMEENAYNNGPMESMVESASK 863


>gb|KHG23499.1| Chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Gossypium arboreum]
          Length = 1027

 Score =  435 bits (1119), Expect(2) = 0.0
 Identities = 225/365 (61%), Positives = 269/365 (73%), Gaps = 6/365 (1%)
 Frame = -2

Query: 2712 DSGTLPQSAIQRIAEKLRSLGYVEEDKDNPEKGINYNGSSPGEIFVPLPTKLPKYRVGHT 2533
            ++  LPQSAIQRIA+KLRSLG+ E  K  PE         PGEIFVPLP KLPKYRVGHT
Sbjct: 54   ENQALPQSAIQRIADKLRSLGFSETPKPQPES--ESGSGCPGEIFVPLPEKLPKYRVGHT 111

Query: 2532 LDQSWSTPENPVPVPGS--GNAIQSFHEL---RHGVFKEKEEDRLRRRGLENGGKAPSLA 2368
            +D SWSTPENPVP PGS  G+ +  F ++   R  + + KEE+R+           PSLA
Sbjct: 112  IDTSWSTPENPVPDPGSDPGSLMVRFRDMKRERKKMGRVKEEERV----------VPSLA 161

Query: 2367 XXXXXXXXXXXXRSIGIGLKKKLNVGKSGITEGIVNGIHERWRHSELVKIKCEDICRLNM 2188
                        R++GIG K+KL VGK+GITEGIVNGIHERWR SE+V+I CEDIC++NM
Sbjct: 162  ELKLSAAELKRLRTVGIGEKRKLKVGKAGITEGIVNGIHERWRKSEVVRIVCEDICKMNM 221

Query: 2187 KRTHNLLERKTGGLVIWRSGSNIILYRGADYKYPYFFTDSNSTNDASNEASPDLDMDDGV 2008
            KRTH +LERKTGGLVIWRSGS IILYRGA+YKYPYF  D   T+D+S+ ASPD ++ +  
Sbjct: 222  KRTHEVLERKTGGLVIWRSGSKIILYRGANYKYPYFSADKIGTHDSSSNASPDTNVANKE 281

Query: 2007 HDGSDKLSGT-HVVKSPGPNALIGISHPHLVKGVGLPNRVRFQLPGEAQLAEEADMLLEG 1831
             D ++  S   + VK+  P A   ++   L++GVG P+RVRFQLPGEA+L  EAD LL+G
Sbjct: 282  LDETESCSSEFNGVKTSTPKATDKMTKRALIQGVGSPSRVRFQLPGEAELVAEADRLLDG 341

Query: 1830 LGPRFIDWWGYDPLPVDADLLPAIVPGYKRPFRLLPYGVKFKLTNDEMTTLKRLGRPLPC 1651
            LGPRF DWWGY+PLPVD DLLPAI+PGY+RPFRLLPYGVK  LTNDEMTTL+RLGRPLPC
Sbjct: 342  LGPRFTDWWGYEPLPVDGDLLPAIIPGYRRPFRLLPYGVKSLLTNDEMTTLRRLGRPLPC 401

Query: 1650 HFALG 1636
            HFALG
Sbjct: 402  HFALG 406



 Score =  424 bits (1090), Expect(2) = 0.0
 Identities = 268/546 (49%), Positives = 339/546 (62%), Gaps = 1/546 (0%)
 Frame = -1

Query: 1636 GRNKKLQGLAASIVKLWEKCEIAKIAIKRGVQNTNSEIMAEELKWLTGGTLLSRDKEFIV 1457
            GRN+KLQGLAASI+KLWEKCEIAKIA+KRGVQNTNSE+MAEELKWLTGGTLLSRDK+FIV
Sbjct: 406  GRNRKLQGLAASIIKLWEKCEIAKIAVKRGVQNTNSELMAEELKWLTGGTLLSRDKDFIV 465

Query: 1456 FYRGKDFLPAAVSSAIEERRKYGINGA-KTGKDHDLNEKEHKHGTLEYAPQNEHHEASDK 1280
             YRGKDFLP+AVSSAIEERRK+ I+   ++GK     ++ +  GT + A +N+ + A D 
Sbjct: 466  LYRGKDFLPSAVSSAIEERRKHVIHAENQSGKTM---QEVNGEGT-KTASENDINSAKDH 521

Query: 1279 KLKLHSEERKLRHAESAIKRTSSKLSMXXXXXXXXXXXXXXXXXXEIPQQLEIDKEGITE 1100
            K  + S  + L   E+ IKRTSSKLSM                   IPQQ EIDKEGIT 
Sbjct: 522  KSDVFSVRKNLNSTEATIKRTSSKLSMALEKKAKAEKLLAQLEQEVIPQQSEIDKEGITR 581

Query: 1099 EERYMLRKVGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMIGSRTIEEVHGIART 920
            EERYMLRKVGLRMK FLLLGRRGVFDGTVENMHLHWKYRELVK++     +E VH  A+ 
Sbjct: 582  EERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIISKETNVEAVHQEAQI 641

Query: 919  LEAESGGILVAVERVSKGYAIIVYRGKNYKRPASLRPQTLLSKREAMKRSIEAQRRESLK 740
            LEAESGGILVAVERVSKGYAII YRGKNY+RP  LRPQTLL+KREAMKRS+E QR +SLK
Sbjct: 642  LEAESGGILVAVERVSKGYAIIFYRGKNYERPTCLRPQTLLTKREAMKRSLEEQRHKSLK 701

Query: 739  LHVLKLTRNIDELKLRLAEDKDSNDIHMAKDLEHGVVKEQEMNKIYITEDATSYRNSRID 560
            LH+LKLTRNIDELK +L  DK++++  +A D       E+EM     T  +  +  S I+
Sbjct: 702  LHILKLTRNIDELKHQLVVDKEASN-KLAADQSRLPSVEEEME----TLQSVKFARSDIE 756

Query: 559  HQSYPXXVAELEMNKIYITEDATSYRNPRIDHQSYPTGHSTEEARGSHGADVTHMDTKGS 380
            + + P    E +        ++TS +N R+                   A V+  +    
Sbjct: 757  YHASPEGHLEAKDK-----PESTSMKNDRMI------------------AAVSISEPSEQ 793

Query: 379  MDTAMDSVHQQDLGENISLQSEVKGENVFDTSKADLQVKSVLKETKGSLDIKGKDGTVKI 200
            +     S+H  D  EN   +SE   E+V +  K + +++++  +                
Sbjct: 794  VLVEPSSIH--DGVENHKTESEFSSESV-NRRKHNTELRALHSQ---------------- 834

Query: 199  FRSPDQTSSSATAYVQPHFCDNKAMTSNVGSREAMLEPSVDKSRERDSPGTPFRARRLSN 20
            F   D +SS     ++ +  +N  M S V S    L+  +  + +  S      A+ LSN
Sbjct: 835  FEMVD-SSSHHDNLMEENAYNNGPMESMVESASKNLDVLISPAADNVSNKMASTAKFLSN 893

Query: 19   RERLLL 2
            +ERLLL
Sbjct: 894  KERLLL 899


>ref|XP_012483760.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Gossypium raimondii]
            gi|763766500|gb|KJB33715.1| hypothetical protein
            B456_006G027700 [Gossypium raimondii]
          Length = 1012

 Score =  434 bits (1115), Expect(2) = 0.0
 Identities = 224/365 (61%), Positives = 268/365 (73%), Gaps = 6/365 (1%)
 Frame = -2

Query: 2712 DSGTLPQSAIQRIAEKLRSLGYVEEDKDNPEKGINYNGSSPGEIFVPLPTKLPKYRVGHT 2533
            ++  LPQSAIQRIA+KLRSLG+ E     PE         PGEIFVPLP KLPKYRVGHT
Sbjct: 50   ENQALPQSAIQRIADKLRSLGFSETPNPQPES--ESGSGCPGEIFVPLPEKLPKYRVGHT 107

Query: 2532 LDQSWSTPENPVPVPGS--GNAIQSFHEL---RHGVFKEKEEDRLRRRGLENGGKAPSLA 2368
            +D SWSTPENPVP PGS  G+ +  F ++   R  + + KEE+R+           PSLA
Sbjct: 108  IDSSWSTPENPVPDPGSDPGSLMVRFRDMKRERKKMGRVKEEERV----------VPSLA 157

Query: 2367 XXXXXXXXXXXXRSIGIGLKKKLNVGKSGITEGIVNGIHERWRHSELVKIKCEDICRLNM 2188
                        R++GIG K+KL VGK+GITEGIVNGIHERWR SE+V+I CEDIC++NM
Sbjct: 158  ELKLSAAELKRLRTVGIGEKRKLKVGKAGITEGIVNGIHERWRKSEVVRIVCEDICKMNM 217

Query: 2187 KRTHNLLERKTGGLVIWRSGSNIILYRGADYKYPYFFTDSNSTNDASNEASPDLDMDDGV 2008
            KRTH +LERKTGGLVIWRSGS IILYRGA+YKYPYF  D   T+D+S+ AS D ++D+  
Sbjct: 218  KRTHEVLERKTGGLVIWRSGSKIILYRGANYKYPYFSADKIGTHDSSSNASSDTNVDNKE 277

Query: 2007 HDGSDKLSGT-HVVKSPGPNALIGISHPHLVKGVGLPNRVRFQLPGEAQLAEEADMLLEG 1831
             D ++  S   + VK+  P A   ++   L++GVG P+RVRFQLPGEA+L  EAD LL+G
Sbjct: 278  LDETESCSSEFNGVKTSTPKATDKMTKRALIQGVGSPSRVRFQLPGEAELVAEADRLLDG 337

Query: 1830 LGPRFIDWWGYDPLPVDADLLPAIVPGYKRPFRLLPYGVKFKLTNDEMTTLKRLGRPLPC 1651
            LGPRF DWWGY+PLPVD DLLPAI+PGY+RPFRLLPYGVK  LTNDEMTTL+RLGRPLPC
Sbjct: 338  LGPRFTDWWGYEPLPVDGDLLPAIIPGYRRPFRLLPYGVKSLLTNDEMTTLRRLGRPLPC 397

Query: 1650 HFALG 1636
            HFALG
Sbjct: 398  HFALG 402



 Score =  425 bits (1093), Expect(2) = 0.0
 Identities = 254/468 (54%), Positives = 313/468 (66%), Gaps = 6/468 (1%)
 Frame = -1

Query: 1636 GRNKKLQGLAASIVKLWEKCEIAKIAIKRGVQNTNSEIMAEELKWLTGGTLLSRDKEFIV 1457
            GRN+KLQGLAASI+KLWEKCEIAKIA+KRGVQNTNSE+MAEELKWLTGGTLLSRDK+FIV
Sbjct: 402  GRNRKLQGLAASIIKLWEKCEIAKIAVKRGVQNTNSELMAEELKWLTGGTLLSRDKDFIV 461

Query: 1456 FYRGKDFLPAAVSSAIEERRKYGINGA-KTGKDHDLNEKEHKHGTLEYAPQNEHHEASDK 1280
             YRGKDFLP+AVSSAIEERRK+ I+   ++GK     ++ H  G  + A +N+ + A D+
Sbjct: 462  LYRGKDFLPSAVSSAIEERRKHVIHAENQSGKTM---QEVHGEGA-KIASENDINSAKDR 517

Query: 1279 KLKLHSEERKLRHAESAIKRTSSKLSMXXXXXXXXXXXXXXXXXXEIPQQLEIDKEGITE 1100
            K  + S  + L  AE+ IKRTSSKLSM                   IPQQ EIDKEGIT 
Sbjct: 518  KSDVFSIRKNLNSAEATIKRTSSKLSMALEKKAKAEKLLAELEQEVIPQQSEIDKEGITR 577

Query: 1099 EERYMLRKVGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVMIGSRTIEEVHGIART 920
            EERYMLRKVGLRMK FLLLGRRGVFDGTVENMHLHWKYRELVK++     +E VH  A+ 
Sbjct: 578  EERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIISKETNVEAVHQEAQI 637

Query: 919  LEAESGGILVAVERVSKGYAIIVYRGKNYKRPASLRPQTLLSKREAMKRSIEAQRRESLK 740
            LEAESGGILVAVERVSKGYAII YRGKNY+RP  LRPQTLL+KREAMKRS+E QRR+SLK
Sbjct: 638  LEAESGGILVAVERVSKGYAIIFYRGKNYERPTCLRPQTLLTKREAMKRSLEEQRRKSLK 697

Query: 739  LHVLKLTRNIDELKLRLAEDKDSNDIHMAKDLEHGVVKEQEMNKIYITEDATSYRNSRID 560
            LH+LKLTRNIDELK +L  DK++++  +A D       E+EM      E   S + +R D
Sbjct: 698  LHILKLTRNIDELKHQLVVDKEASNT-LAADQSRLPSVEEEM------ETLQSVKCARSD 750

Query: 559  HQSYPXXVAELEMNKIYITEDATSYRNPRIDHQ---SYPTGHSTEEARGSHGADVTHMDT 389
             + +      LE        ++TS +N R+      S P+     E    H     H   
Sbjct: 751  IEYHASPEGHLEAKD---KSESTSMKNDRMVAAVSISEPSEQVLVEPSSIHDGVENH--- 804

Query: 388  KGSMDTAMDSVHQQDLGENI-SLQSEVK-GENVFDTSKADLQVKSVLK 251
            K   + + +SV+++     + +L S+ +  EN ++    +  V+S  K
Sbjct: 805  KTEPEFSSESVNRRKHNTELRALHSQFEMEENAYNNGPMESMVESASK 852