BLASTX nr result
ID: Forsythia21_contig00061947
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia21_contig00061947
(298 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAZ03988.1| RNA polymerase beta' chain [Ranunculus macranthus] 85 2e-14
gb|AFU96976.1| RpoC1, partial (chloroplast) [Podostemum ceratoph... 85 2e-14
gb|AFU96974.1| RpoC1, partial (chloroplast) [Ploiarium sp. CCD-2... 85 2e-14
gb|AFU96967.1| RpoC1, partial (chloroplast) [Mammea americana] 85 2e-14
ref|YP_001004177.1| RNA polymerase beta' subunit [Ranunculus mac... 85 2e-14
gb|AGN73971.1| RNA polymerase beta' subunit (chloroplast) [Aconi... 84 3e-14
ref|YP_009000167.1| RNA polymerase beta (chloroplast) (chloropla... 84 3e-14
ref|YP_008999926.1| RNA polymerase beta (chloroplast) (chloropla... 84 3e-14
sp|Q589B9.1|RPOC1_SILLA RecName: Full=DNA-directed RNA polymeras... 84 3e-14
ref|YP_005089325.1| rpoC1 gene product (chloroplast) [Silene vul... 84 3e-14
ref|YP_005089406.1| rpoC1 gene product (chloroplast) [Silene noc... 84 3e-14
ref|YP_005089568.1| rpoC1 gene product (chloroplast) [Silene lat... 84 3e-14
gb|AJS14410.1| RNA polymerase beta [Ruellia breedlovei] 84 4e-14
ref|YP_009121079.1| RNA polymerase beta (plastid) [Cardamine res... 84 4e-14
ref|YP_009120994.1| RNA polymerase beta (plastid) [Cardamine imp... 84 4e-14
ref|YP_009108489.1| RNA polymerase beta' subunit (chloroplast) [... 84 4e-14
ref|YP_008592479.1| RNA polymerase beta' subunit (chloroplast) [... 84 4e-14
ref|YP_008082572.1| RNA polymerase beta (chloroplast) [Utricular... 84 4e-14
ref|YP_007889933.1| RNA polymerase beta' subunit (chloroplast) [... 84 4e-14
ref|NP_051050.1| RNA polymerase beta' subunit [Arabidopsis thali... 84 4e-14
>gb|AAZ03988.1| RNA polymerase beta' chain [Ranunculus macranthus]
Length = 688
Score = 84.7 bits (208), Expect = 2e-14
Identities = 44/66 (66%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Frame = +2
Query: 104 KNHNTQCGLIRVR-LISWLDIGLINLLNGVGPVTKPYTFHYKTNKPEKDGLFCERIFGPI 280
K+ Q GL+ + +I+W + L N VG VTKPYTFHYKTNKPEKDGLFCERIFGPI
Sbjct: 6 KHQQLQIGLVSPQQIITWAEKILPNG-EIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPI 64
Query: 281 KSGICA 298
KSGICA
Sbjct: 65 KSGICA 70
>gb|AFU96976.1| RpoC1, partial (chloroplast) [Podostemum ceratophyllum]
Length = 729
Score = 84.7 bits (208), Expect = 2e-14
Identities = 44/66 (66%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Frame = +2
Query: 104 KNHNTQCGLIRVRLIS-WLDIGLINLLNGVGPVTKPYTFHYKTNKPEKDGLFCERIFGPI 280
K+ + GL+ + IS W L N VG VTKPYTFHYKTNKPEKDGLFCERIFGPI
Sbjct: 6 KHQQLRIGLVSPQQISAWAKRILPNGEXIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPI 65
Query: 281 KSGICA 298
KSGICA
Sbjct: 66 KSGICA 71
>gb|AFU96974.1| RpoC1, partial (chloroplast) [Ploiarium sp. CCD-2012]
Length = 730
Score = 84.7 bits (208), Expect = 2e-14
Identities = 44/66 (66%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Frame = +2
Query: 104 KNHNTQCGLIRVRLIS-WLDIGLINLLNGVGPVTKPYTFHYKTNKPEKDGLFCERIFGPI 280
K+ + GL+ + IS W L N VG VTKPYTFHYKTNKPEKDGLFCERIFGPI
Sbjct: 6 KHQQLRIGLVSPQQISAWAKKILPNGEXIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPI 65
Query: 281 KSGICA 298
KSGICA
Sbjct: 66 KSGICA 71
>gb|AFU96967.1| RpoC1, partial (chloroplast) [Mammea americana]
Length = 731
Score = 84.7 bits (208), Expect = 2e-14
Identities = 44/66 (66%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Frame = +2
Query: 104 KNHNTQCGLIRVRLIS-WLDIGLINLLNGVGPVTKPYTFHYKTNKPEKDGLFCERIFGPI 280
K+ + GL+ + IS W L N VG VTKPYTFHYKTNKPEKDGLFCERIFGPI
Sbjct: 6 KHQQLRIGLVSPQQISAWAKKILPNGEXIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPI 65
Query: 281 KSGICA 298
KSGICA
Sbjct: 66 KSGICA 71
>ref|YP_001004177.1| RNA polymerase beta' subunit [Ranunculus macranthus]
gi|212288309|sp|A1XGM9.1|RPOC1_RANMC RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
(chloroplast) [Ranunculus macranthus]
gi|85540795|gb|ABC70747.1| RNA polymerase beta' subunit
[Ranunculus macranthus]
Length = 680
Score = 84.7 bits (208), Expect = 2e-14
Identities = 44/66 (66%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Frame = +2
Query: 104 KNHNTQCGLIRVR-LISWLDIGLINLLNGVGPVTKPYTFHYKTNKPEKDGLFCERIFGPI 280
K+ Q GL+ + +I+W + L N VG VTKPYTFHYKTNKPEKDGLFCERIFGPI
Sbjct: 6 KHQQLQIGLVSPQQIITWAEKILPNG-EIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPI 64
Query: 281 KSGICA 298
KSGICA
Sbjct: 65 KSGICA 70
>gb|AGN73971.1| RNA polymerase beta' subunit (chloroplast) [Aconitum barbatum var.
puberulum]
Length = 679
Score = 84.3 bits (207), Expect = 3e-14
Identities = 44/66 (66%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Frame = +2
Query: 104 KNHNTQCGLIRVR-LISWLDIGLINLLNGVGPVTKPYTFHYKTNKPEKDGLFCERIFGPI 280
K+ + GL+ + +ISW + L N VG VTKPYTFHYKTNKPEKDGLFCERIFGPI
Sbjct: 6 KHQQLRIGLVSPQQIISWANKILPNG-EMVGEVTKPYTFHYKTNKPEKDGLFCERIFGPI 64
Query: 281 KSGICA 298
KSGICA
Sbjct: 65 KSGICA 70
>ref|YP_009000167.1| RNA polymerase beta (chloroplast) (chloroplast) [Silene paradoxa]
gi|555944256|gb|AGZ18157.1| RNA polymerase beta
(chloroplast) [Silene paradoxa]
Length = 680
Score = 84.3 bits (207), Expect = 3e-14
Identities = 41/65 (63%), Positives = 47/65 (72%)
Frame = +2
Query: 104 KNHNTQCGLIRVRLISWLDIGLINLLNGVGPVTKPYTFHYKTNKPEKDGLFCERIFGPIK 283
K+ + GL+ + IS ++ VG VTKPYTFHYKTNKPEKDGLFCERIFGPIK
Sbjct: 6 KHQQLRIGLVSPKQISAWATKILPNREIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIK 65
Query: 284 SGICA 298
SGICA
Sbjct: 66 SGICA 70
>ref|YP_008999926.1| RNA polymerase beta (chloroplast) (chloroplast) [Agrostemma
githago] gi|555944012|gb|AGZ17916.1| RNA polymerase beta
(chloroplast) [Agrostemma githago]
Length = 677
Score = 84.3 bits (207), Expect = 3e-14
Identities = 41/65 (63%), Positives = 47/65 (72%)
Frame = +2
Query: 104 KNHNTQCGLIRVRLISWLDIGLINLLNGVGPVTKPYTFHYKTNKPEKDGLFCERIFGPIK 283
K+ + GL+ + IS ++ VG VTKPYTFHYKTNKPEKDGLFCERIFGPIK
Sbjct: 6 KHQQLRIGLVSPKQISAWATKILPNREIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIK 65
Query: 284 SGICA 298
SGICA
Sbjct: 66 SGICA 70
>sp|Q589B9.1|RPOC1_SILLA RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
(chloroplast) [Silene latifolia]
gi|62149316|dbj|BAD93458.1| RNA polymerase beta chain
[Silene latifolia]
Length = 687
Score = 84.3 bits (207), Expect = 3e-14
Identities = 41/65 (63%), Positives = 47/65 (72%)
Frame = +2
Query: 104 KNHNTQCGLIRVRLISWLDIGLINLLNGVGPVTKPYTFHYKTNKPEKDGLFCERIFGPIK 283
K+ + GL+ + IS ++ VG VTKPYTFHYKTNKPEKDGLFCERIFGPIK
Sbjct: 6 KHQQLRIGLVSPKQISAWATKILPNREIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIK 65
Query: 284 SGICA 298
SGICA
Sbjct: 66 SGICA 70
>ref|YP_005089325.1| rpoC1 gene product (chloroplast) [Silene vulgaris]
gi|329755677|gb|AEC04238.1| RNA polymerase beta
(chloroplast) [Silene vulgaris]
Length = 684
Score = 84.3 bits (207), Expect = 3e-14
Identities = 41/65 (63%), Positives = 47/65 (72%)
Frame = +2
Query: 104 KNHNTQCGLIRVRLISWLDIGLINLLNGVGPVTKPYTFHYKTNKPEKDGLFCERIFGPIK 283
K+ + GL+ + IS ++ VG VTKPYTFHYKTNKPEKDGLFCERIFGPIK
Sbjct: 6 KHQQLRIGLVSPKQISAWATKILPNREIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIK 65
Query: 284 SGICA 298
SGICA
Sbjct: 66 SGICA 70
>ref|YP_005089406.1| rpoC1 gene product (chloroplast) [Silene noctiflora]
gi|329755594|gb|AEC04156.1| RNA polymerase beta
(chloroplast) [Silene noctiflora]
Length = 674
Score = 84.3 bits (207), Expect = 3e-14
Identities = 41/65 (63%), Positives = 47/65 (72%)
Frame = +2
Query: 104 KNHNTQCGLIRVRLISWLDIGLINLLNGVGPVTKPYTFHYKTNKPEKDGLFCERIFGPIK 283
K+ + GL+ + IS ++ VG VTKPYTFHYKTNKPEKDGLFCERIFGPIK
Sbjct: 6 KHQQLRIGLVSPKQISAWATKILPNREIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIK 65
Query: 284 SGICA 298
SGICA
Sbjct: 66 SGICA 70
>ref|YP_005089568.1| rpoC1 gene product (chloroplast) [Silene latifolia]
gi|329755512|gb|AEC04075.1| RNA polymerase beta
(chloroplast) [Silene latifolia]
Length = 684
Score = 84.3 bits (207), Expect = 3e-14
Identities = 41/65 (63%), Positives = 47/65 (72%)
Frame = +2
Query: 104 KNHNTQCGLIRVRLISWLDIGLINLLNGVGPVTKPYTFHYKTNKPEKDGLFCERIFGPIK 283
K+ + GL+ + IS ++ VG VTKPYTFHYKTNKPEKDGLFCERIFGPIK
Sbjct: 6 KHQQLRIGLVSPKQISAWATKILPNREIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIK 65
Query: 284 SGICA 298
SGICA
Sbjct: 66 SGICA 70
>gb|AJS14410.1| RNA polymerase beta [Ruellia breedlovei]
Length = 687
Score = 84.0 bits (206), Expect = 4e-14
Identities = 41/65 (63%), Positives = 47/65 (72%)
Frame = +2
Query: 104 KNHNTQCGLIRVRLISWLDIGLINLLNGVGPVTKPYTFHYKTNKPEKDGLFCERIFGPIK 283
K+ + GL+ + IS ++ VG VTKPYTFHYKTNKPEKDGLFCERIFGPIK
Sbjct: 6 KHEQLRIGLVSPQQISAWSTKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIK 65
Query: 284 SGICA 298
SGICA
Sbjct: 66 SGICA 70
>ref|YP_009121079.1| RNA polymerase beta (plastid) [Cardamine resedifolia]
gi|597441221|gb|AHN07246.1| RNA polymerase beta
[Cardamine resedifolia]
Length = 680
Score = 84.0 bits (206), Expect = 4e-14
Identities = 42/65 (64%), Positives = 47/65 (72%)
Frame = +2
Query: 104 KNHNTQCGLIRVRLISWLDIGLINLLNGVGPVTKPYTFHYKTNKPEKDGLFCERIFGPIK 283
K+ + GL+ + IS +I VG VTKPYTFHYKTNKPEKDGLFCERIFGPIK
Sbjct: 6 KHQQLRIGLVSPQQISAWATKIIPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIK 65
Query: 284 SGICA 298
SGICA
Sbjct: 66 SGICA 70
>ref|YP_009120994.1| RNA polymerase beta (plastid) [Cardamine impatiens]
gi|597441135|gb|AHN07161.1| RNA polymerase beta
[Cardamine impatiens]
Length = 680
Score = 84.0 bits (206), Expect = 4e-14
Identities = 42/65 (64%), Positives = 47/65 (72%)
Frame = +2
Query: 104 KNHNTQCGLIRVRLISWLDIGLINLLNGVGPVTKPYTFHYKTNKPEKDGLFCERIFGPIK 283
K+ + GL+ + IS +I VG VTKPYTFHYKTNKPEKDGLFCERIFGPIK
Sbjct: 6 KHQQLRIGLVSPQQISAWATKIIPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIK 65
Query: 284 SGICA 298
SGICA
Sbjct: 66 SGICA 70
>ref|YP_009108489.1| RNA polymerase beta' subunit (chloroplast) [Utricularia macrorhiza]
gi|702068595|emb|CDL78727.1| RNA polymerase beta'
subunit (chloroplast) [Utricularia macrorhiza]
Length = 689
Score = 84.0 bits (206), Expect = 4e-14
Identities = 43/74 (58%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Frame = +2
Query: 83 NIDKSYD--KNHNTQCGLIRVRLISWLDIGLINLLNGVGPVTKPYTFHYKTNKPEKDGLF 256
N D D K+ + GL+ + IS ++ +G VTKPYTFHYKTNKPEKDGLF
Sbjct: 4 NFDSMIDQYKHQQLRIGLVSPQQISAWATKILPNGEIIGEVTKPYTFHYKTNKPEKDGLF 63
Query: 257 CERIFGPIKSGICA 298
CERIFGPIKSGICA
Sbjct: 64 CERIFGPIKSGICA 77
>ref|YP_008592479.1| RNA polymerase beta' subunit (chloroplast) [Andrographis
paniculata] gi|532164827|gb|AGT79837.1| RNA polymerase
beta' subunit (chloroplast) [Andrographis paniculata]
Length = 687
Score = 84.0 bits (206), Expect = 4e-14
Identities = 41/65 (63%), Positives = 47/65 (72%)
Frame = +2
Query: 104 KNHNTQCGLIRVRLISWLDIGLINLLNGVGPVTKPYTFHYKTNKPEKDGLFCERIFGPIK 283
K+ + GL+ + IS ++ VG VTKPYTFHYKTNKPEKDGLFCERIFGPIK
Sbjct: 6 KHQQLRIGLVSPQQISAWSTKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIK 65
Query: 284 SGICA 298
SGICA
Sbjct: 66 SGICA 70
>ref|YP_008082572.1| RNA polymerase beta (chloroplast) [Utricularia gibba]
gi|498921845|gb|AGL61066.1| RNA polymerase beta
(chloroplast) [Utricularia gibba]
Length = 693
Score = 84.0 bits (206), Expect = 4e-14
Identities = 43/74 (58%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Frame = +2
Query: 83 NIDKSYD--KNHNTQCGLIRVRLISWLDIGLINLLNGVGPVTKPYTFHYKTNKPEKDGLF 256
N D D K+ + GL+ + IS ++ +G VTKPYTFHYKTNKPEKDGLF
Sbjct: 4 NFDSMIDQYKHQQLRIGLVSPQQISAWATKILPNGEIIGEVTKPYTFHYKTNKPEKDGLF 63
Query: 257 CERIFGPIKSGICA 298
CERIFGPIKSGICA
Sbjct: 64 CERIFGPIKSGICA 77
>ref|YP_007889933.1| RNA polymerase beta' subunit (chloroplast) [Pachycladon
cheesemanii] gi|392934144|gb|AFM92270.1| RNA polymerase
beta' subunit (chloroplast) [Pachycladon cheesemanii]
Length = 680
Score = 84.0 bits (206), Expect = 4e-14
Identities = 42/65 (64%), Positives = 47/65 (72%)
Frame = +2
Query: 104 KNHNTQCGLIRVRLISWLDIGLINLLNGVGPVTKPYTFHYKTNKPEKDGLFCERIFGPIK 283
K+ + GL+ + IS +I VG VTKPYTFHYKTNKPEKDGLFCERIFGPIK
Sbjct: 6 KHQQLRIGLVSPQQISAWATKIIPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIK 65
Query: 284 SGICA 298
SGICA
Sbjct: 66 SGICA 70
>ref|NP_051050.1| RNA polymerase beta' subunit [Arabidopsis thaliana]
gi|6685904|sp|P56763.1|RPOC1_ARATH RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|5881685|dbj|BAA84376.1| RNA polymerase beta'
subunit-1 [Arabidopsis thaliana]
Length = 680
Score = 84.0 bits (206), Expect = 4e-14
Identities = 42/65 (64%), Positives = 47/65 (72%)
Frame = +2
Query: 104 KNHNTQCGLIRVRLISWLDIGLINLLNGVGPVTKPYTFHYKTNKPEKDGLFCERIFGPIK 283
K+ + GL+ + IS +I VG VTKPYTFHYKTNKPEKDGLFCERIFGPIK
Sbjct: 6 KHQQLRIGLVSPQQISAWATKIIPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIK 65
Query: 284 SGICA 298
SGICA
Sbjct: 66 SGICA 70