BLASTX nr result
ID: Forsythia21_contig00055972
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia21_contig00055972
(308 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_005648578.1| chloroplast ribulose 1,5-bisphosphate carbox... 94 3e-17
gb|ACF16408.1| chloroplast ribulose 1,5-bisphosphate carboxylase... 87 4e-15
dbj|BAM68686.1| ribulose 1,5-bisphosphate carboxlase/oxygenase s... 75 2e-11
ref|XP_005852247.1| hypothetical protein CHLNCDRAFT_29368 [Chlor... 74 3e-11
ref|XP_005851923.1| hypothetical protein CHLNCDRAFT_59545 [Chlor... 74 3e-11
gb|ACU32662.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 74 5e-11
dbj|BAR91106.1| ribulose 1,5-bisphosphate carboxylase/oxygenase ... 71 3e-10
ref|XP_011043951.1| PREDICTED: ribulose bisphosphate carboxylase... 69 9e-10
gb|ACU32661.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 69 9e-10
ref|XP_006372084.1| hypothetical protein POPTR_0018s09880g [Popu... 68 3e-09
gb|ABK96070.1| unknown [Populus trichocarpa] 68 3e-09
ref|XP_009608851.1| PREDICTED: ribulose bisphosphate carboxylase... 66 1e-08
dbj|BAD42334.1| ribulose-1,5-bisphosphate carboxyase/oxygenase s... 65 1e-08
ref|XP_009794031.1| PREDICTED: ribulose bisphosphate carboxylase... 65 2e-08
dbj|BAI47769.1| ribulose -1, 5-bisphosphate carboxylase/oxygenas... 65 2e-08
dbj|BAI47767.1| ribulose bisphosphate carboxylase small subunit ... 65 2e-08
dbj|BAD42333.1| ribulose-1,5-bisphosphate carboxyase/oxygenase s... 65 2e-08
ref|XP_009336182.1| PREDICTED: ribulose bisphosphate carboxylase... 64 4e-08
sp|P16137.1|RBS4_ACEAT RecName: Full=Ribulose bisphosphate carbo... 64 5e-08
ref|XP_008223772.1| PREDICTED: ribulose bisphosphate carboxylase... 63 7e-08
>ref|XP_005648578.1| chloroplast ribulose 1,5-bisphosphate carboxylase/oxygenase small
subunit [Coccomyxa subellipsoidea C-169]
gi|384250555|gb|EIE24034.1| chloroplast ribulose
1,5-bisphosphate carboxylase/oxygenase small subunit
[Coccomyxa subellipsoidea C-169]
Length = 195
Score = 94.4 bits (233), Expect = 3e-17
Identities = 44/72 (61%), Positives = 54/72 (75%)
Frame = -1
Query: 221 VKCQAPRPAFSGLARVPLQKAQRNTFAARTVSNGMKTRQMMVWQPTDNKFFETLSFLPPL 42
V + + FSGLARV L TFA RTVSNG +TRQM+VW+P DNKFFET S+LPPL
Sbjct: 15 VAAKPSKAGFSGLARVALPAKAVPTFAQRTVSNGCRTRQMLVWEPVDNKFFETFSYLPPL 74
Query: 41 SQDEIARQVDYV 6
+ D+IA+QVDY+
Sbjct: 75 TDDQIAKQVDYI 86
>gb|ACF16408.1| chloroplast ribulose 1,5-bisphosphate carboxylase/oxygenase small
subunit [Lobosphaera incisa] gi|657202139|gb|AID50176.1|
chloroplast ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit [Lobosphaera incisa]
Length = 189
Score = 87.0 bits (214), Expect = 4e-15
Identities = 39/55 (70%), Positives = 49/55 (89%)
Frame = -1
Query: 170 LQKAQRNTFAARTVSNGMKTRQMMVWQPTDNKFFETLSFLPPLSQDEIARQVDYV 6
L A+ TFA +TVSNG+KTRQMMVWQPT+N++FETLSFLPPL+ D+IA+QVDY+
Sbjct: 28 LAPARAATFAQKTVSNGIKTRQMMVWQPTNNRYFETLSFLPPLTDDQIAKQVDYM 82
>dbj|BAM68686.1| ribulose 1,5-bisphosphate carboxlase/oxygenase small subunit
[Botryococcus braunii] gi|426206142|dbj|BAM68687.1|
ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Botryococcus braunii]
Length = 190
Score = 75.1 bits (183), Expect = 2e-11
Identities = 35/60 (58%), Positives = 45/60 (75%)
Frame = -1
Query: 185 LARVPLQKAQRNTFAARTVSNGMKTRQMMVWQPTDNKFFETLSFLPPLSQDEIARQVDYV 6
+AR + N +A +TVSNG+KT MMVW PT+NKFFET S+LPPLS EIA+QV+Y+
Sbjct: 24 VARPAILAPAVNQWAKKTVSNGIKTSAMMVWTPTNNKFFETFSYLPPLSDAEIAKQVEYI 83
>ref|XP_005852247.1| hypothetical protein CHLNCDRAFT_29368 [Chlorella variabilis]
gi|307111911|gb|EFN60145.1| hypothetical protein
CHLNCDRAFT_29368 [Chlorella variabilis]
Length = 184
Score = 74.3 bits (181), Expect = 3e-11
Identities = 38/62 (61%), Positives = 46/62 (74%), Gaps = 2/62 (3%)
Frame = -1
Query: 185 LARVPLQKAQRNTFAARTVSNGM--KTRQMMVWQPTDNKFFETLSFLPPLSQDEIARQVD 12
+A PL++A +NTFAARTVSNG K M VW P +NK FET SFLPPL+ EI+RQVD
Sbjct: 16 MASTPLKQA-KNTFAARTVSNGSIKKVSAMQVWTPLNNKMFETFSFLPPLTDGEISRQVD 74
Query: 11 YV 6
Y+
Sbjct: 75 YI 76
>ref|XP_005851923.1| hypothetical protein CHLNCDRAFT_59545 [Chlorella variabilis]
gi|307111587|gb|EFN59821.1| hypothetical protein
CHLNCDRAFT_59545 [Chlorella variabilis]
Length = 184
Score = 74.3 bits (181), Expect = 3e-11
Identities = 38/62 (61%), Positives = 46/62 (74%), Gaps = 2/62 (3%)
Frame = -1
Query: 185 LARVPLQKAQRNTFAARTVSNGM--KTRQMMVWQPTDNKFFETLSFLPPLSQDEIARQVD 12
+A PL++A +NTFAARTVSNG K M VW P +NK FET SFLPPL+ EI+RQVD
Sbjct: 16 MASTPLKQA-KNTFAARTVSNGSIKKVSAMQVWTPLNNKMFETFSFLPPLTDGEISRQVD 74
Query: 11 YV 6
Y+
Sbjct: 75 YI 76
>gb|ACU32662.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Chlorella pyrenoidosa]
Length = 184
Score = 73.6 bits (179), Expect = 5e-11
Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 9/71 (12%)
Frame = -1
Query: 191 SGLARVPLQKAQRN-------TFAARTVSNG--MKTRQMMVWQPTDNKFFETLSFLPPLS 39
+ L + P+ QR+ TF A TVSNG KT MMVW P +NKFFET S+LPPLS
Sbjct: 7 ASLVKAPVATTQRSVLKPAGKTFKAVTVSNGNVQKTSAMMVWTPVNNKFFETFSYLPPLS 66
Query: 38 QDEIARQVDYV 6
D+IARQVDY+
Sbjct: 67 GDQIARQVDYI 77
>dbj|BAR91106.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
(rbcS) [Ipomoea batatas]
Length = 167
Score = 70.9 bits (172), Expect = 3e-10
Identities = 34/64 (53%), Positives = 44/64 (68%)
Frame = -1
Query: 197 AFSGLARVPLQKAQRNTFAARTVSNGMKTRQMMVWQPTDNKFFETLSFLPPLSQDEIARQ 18
+F GL R L +++ +TVSNG KT M W P DNK FETLS+LPPLSQ+ IA++
Sbjct: 16 SFVGLKRTLLPSNYSVSWSRKTVSNGSKTLCMKTWNPIDNKRFETLSYLPPLSQESIAKE 75
Query: 17 VDYV 6
VDY+
Sbjct: 76 VDYI 79
>ref|XP_011043951.1| PREDICTED: ribulose bisphosphate carboxylase small chain clone
512-like [Populus euphratica]
Length = 170
Score = 69.3 bits (168), Expect = 9e-10
Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 4/69 (5%)
Frame = -1
Query: 200 PAFSGLARVPLQK--AQRNTFA--ARTVSNGMKTRQMMVWQPTDNKFFETLSFLPPLSQD 33
PA+ GL +P ++ A +N+ A +RTVSNG KT M W P +NK FE LS+LPPLS+D
Sbjct: 14 PAYHGLRALPTKQPFATKNSVARSSRTVSNGSKTFCMKTWNPINNKKFEALSYLPPLSED 73
Query: 32 EIARQVDYV 6
IA+++DY+
Sbjct: 74 SIAKEIDYM 82
>gb|ACU32661.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Chlorella pyrenoidosa]
Length = 181
Score = 69.3 bits (168), Expect = 9e-10
Identities = 34/55 (61%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Frame = -1
Query: 164 KAQRNTFAARTVSNG--MKTRQMMVWQPTDNKFFETLSFLPPLSQDEIARQVDYV 6
K +NT AARTVSNG KT M VW P +NK FET S+LPPL+ EI+RQVDY+
Sbjct: 20 KQAKNTSAARTVSNGSIQKTTAMQVWTPINNKMFETFSYLPPLTDAEISRQVDYI 74
>ref|XP_006372084.1| hypothetical protein POPTR_0018s09880g [Populus trichocarpa]
gi|550318425|gb|ERP49881.1| hypothetical protein
POPTR_0018s09880g [Populus trichocarpa]
Length = 231
Score = 67.8 bits (164), Expect = 3e-09
Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 4/69 (5%)
Frame = -1
Query: 200 PAFSGLARVPLQK--AQRNTFA--ARTVSNGMKTRQMMVWQPTDNKFFETLSFLPPLSQD 33
P + GL +P ++ A +N+ A +RTVSNG KT M W P +NK FE LS+LPPLS+D
Sbjct: 14 PGYHGLRALPTKQPFATKNSVARSSRTVSNGSKTFCMKTWNPINNKKFEALSYLPPLSED 73
Query: 32 EIARQVDYV 6
IA+++DY+
Sbjct: 74 SIAKEIDYM 82
>gb|ABK96070.1| unknown [Populus trichocarpa]
Length = 170
Score = 67.8 bits (164), Expect = 3e-09
Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 4/69 (5%)
Frame = -1
Query: 200 PAFSGLARVPLQK--AQRNTFA--ARTVSNGMKTRQMMVWQPTDNKFFETLSFLPPLSQD 33
P + GL +P ++ A +N+ A +RTVSNG KT M W P +NK FE LS+LPPLS+D
Sbjct: 14 PGYHGLRALPTKQPFATKNSVARSSRTVSNGSKTFCMKTWNPINNKKFEALSYLPPLSED 73
Query: 32 EIARQVDYV 6
IA+++DY+
Sbjct: 74 SIAKEIDYM 82
>ref|XP_009608851.1| PREDICTED: ribulose bisphosphate carboxylase small chain clone
512-like [Nicotiana tomentosiformis]
Length = 169
Score = 65.9 bits (159), Expect = 1e-08
Identities = 29/48 (60%), Positives = 37/48 (77%)
Frame = -1
Query: 149 TFAARTVSNGMKTRQMMVWQPTDNKFFETLSFLPPLSQDEIARQVDYV 6
T+ +T+SNG KT M W P DNK FETLS+LPPLS+D IA++VDY+
Sbjct: 34 TWNRKTISNGSKTYCMKTWNPIDNKKFETLSYLPPLSEDSIAKEVDYM 81
>dbj|BAD42334.1| ribulose-1,5-bisphosphate carboxyase/oxygenase small subunit
[Nannochloris bacillaris]
Length = 182
Score = 65.5 bits (158), Expect = 1e-08
Identities = 34/60 (56%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Frame = -1
Query: 173 PLQKAQRNTFAART--VSNGM--KTRQMMVWQPTDNKFFETLSFLPPLSQDEIARQVDYV 6
P+ K + ART VSNG KT M+VW P +NKFFET SFLPPLS EI +QVDY+
Sbjct: 16 PITKVNATSTKARTAFVSNGTVKKTTAMLVWTPINNKFFETFSFLPPLSDSEITKQVDYI 75
>ref|XP_009794031.1| PREDICTED: ribulose bisphosphate carboxylase small chain clone
512-like [Nicotiana sylvestris]
Length = 170
Score = 65.1 bits (157), Expect = 2e-08
Identities = 28/48 (58%), Positives = 38/48 (79%)
Frame = -1
Query: 149 TFAARTVSNGMKTRQMMVWQPTDNKFFETLSFLPPLSQDEIARQVDYV 6
+++ +T+SNG KT M W P DNK FETLS+LPPLS+D IA++VDY+
Sbjct: 34 SWSRKTISNGSKTCCMKTWNPIDNKKFETLSYLPPLSEDSIAKEVDYM 81
>dbj|BAI47769.1| ribulose -1, 5-bisphosphate carboxylase/oxygenase small subunit
[Ulva pertusa]
Length = 180
Score = 65.1 bits (157), Expect = 2e-08
Identities = 36/68 (52%), Positives = 43/68 (63%)
Frame = -1
Query: 209 APRPAFSGLARVPLQKAQRNTFAARTVSNGMKTRQMMVWQPTDNKFFETLSFLPPLSQDE 30
AP+ AF GL++ T A V+N K +MMVW P +NK FET SFLPPLS E
Sbjct: 13 APK-AFKGLSKA--------TKPAAKVANVSKASEMMVWTPLNNKMFETFSFLPPLSHGE 63
Query: 29 IARQVDYV 6
IARQVDY+
Sbjct: 64 IARQVDYI 71
>dbj|BAI47767.1| ribulose bisphosphate carboxylase small subunit [Ulva pertusa]
gi|262072921|dbj|BAI47768.1| ribulose -1, 5-bisphosphate
carboxylase/oxygenase small subunit [Ulva pertusa]
Length = 180
Score = 65.1 bits (157), Expect = 2e-08
Identities = 36/68 (52%), Positives = 43/68 (63%)
Frame = -1
Query: 209 APRPAFSGLARVPLQKAQRNTFAARTVSNGMKTRQMMVWQPTDNKFFETLSFLPPLSQDE 30
AP+ AF GL++ T A V+N K +MMVW P +NK FET SFLPPLS E
Sbjct: 13 APK-AFKGLSKA--------TKPAAKVANVSKASEMMVWTPLNNKMFETFSFLPPLSHGE 63
Query: 29 IARQVDYV 6
IARQVDY+
Sbjct: 64 IARQVDYI 71
>dbj|BAD42333.1| ribulose-1,5-bisphosphate carboxyase/oxygenase small subunit
[Nannochloris bacillaris]
Length = 182
Score = 64.7 bits (156), Expect = 2e-08
Identities = 34/60 (56%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Frame = -1
Query: 173 PLQKAQRNTFAART--VSNGM--KTRQMMVWQPTDNKFFETLSFLPPLSQDEIARQVDYV 6
P+ K + ART VSNG KT M+VW P +NKFFET SFLPPLS EI +QVDY+
Sbjct: 16 PITKVNAASTKARTAFVSNGTVKKTTAMLVWTPINNKFFETFSFLPPLSDSEITKQVDYI 75
>ref|XP_009336182.1| PREDICTED: ribulose bisphosphate carboxylase small chain clone
512-like [Pyrus x bretschneideri]
Length = 180
Score = 63.9 bits (154), Expect = 4e-08
Identities = 28/47 (59%), Positives = 37/47 (78%)
Frame = -1
Query: 146 FAARTVSNGMKTRQMMVWQPTDNKFFETLSFLPPLSQDEIARQVDYV 6
+A +TVSNG +T M VW P +NK FETLS+LPPLS D IA+++DY+
Sbjct: 34 WAKKTVSNGSRTLCMKVWNPINNKKFETLSYLPPLSDDSIAKEIDYM 80
>sp|P16137.1|RBS4_ACEAT RecName: Full=Ribulose bisphosphate carboxylase small chain 4,
chloroplastic; Short=RuBisCO small subunit 4; Flags:
Precursor [Acetabularia acetabulum]
gi|732554|emb|CAA36111.1| ribulose bisphosphate
carboxylase, small subunit precursor [Acetabularia
acetabulum]
Length = 182
Score = 63.5 bits (153), Expect = 5e-08
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = -1
Query: 182 ARVPLQKAQRNTFAARTVSNGMKTRQMMVWQPTDNKFFETLSFLPPLSQDEIARQVDYV 6
A P + +FA+ TV+N K R+MMVWQP +NK FET SFLPPL+ ++I++QVDY+
Sbjct: 20 AATPKVVTSKRSFAS-TVAN--KNREMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYI 75
>ref|XP_008223772.1| PREDICTED: ribulose bisphosphate carboxylase small chain clone
512-like [Prunus mume]
Length = 176
Score = 63.2 bits (152), Expect = 7e-08
Identities = 27/44 (61%), Positives = 35/44 (79%)
Frame = -1
Query: 137 RTVSNGMKTRQMMVWQPTDNKFFETLSFLPPLSQDEIARQVDYV 6
+TVSNG +T M VW P +NK FETLS+LPPLS D IA+++DY+
Sbjct: 37 KTVSNGSRTHCMKVWNPINNKKFETLSYLPPLSDDSIAKEIDYM 80