BLASTX nr result
ID: Forsythia21_contig00053912
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia21_contig00053912
(340 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN72527.1| hypothetical protein VITISV_009255 [Vitis vinifera] 65 3e-13
emb|CAN73071.1| hypothetical protein VITISV_032383 [Vitis vinifera] 67 8e-13
emb|CAN67588.1| hypothetical protein VITISV_036280 [Vitis vinifera] 64 1e-12
ref|XP_002445564.1| hypothetical protein SORBIDRAFT_07g021665 [S... 62 1e-12
emb|CAN69607.1| hypothetical protein VITISV_009561 [Vitis vinifera] 65 2e-12
emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera] 56 1e-11
emb|CAB10381.1| retrotransposon like protein [Arabidopsis thalia... 61 1e-11
gb|ABA91195.1| retrotransposon protein, putative, Ty1-copia subc... 57 1e-11
ref|XP_009350454.1| PREDICTED: nuclear cap-binding protein subun... 59 3e-11
emb|CAN65555.1| hypothetical protein VITISV_009833 [Vitis vinifera] 61 3e-11
ref|XP_006595215.1| PREDICTED: uncharacterized mitochondrial pro... 60 5e-11
gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group] 57 5e-11
ref|XP_002489309.1| hypothetical protein SORBIDRAFT_0010s008890 ... 52 5e-11
ref|NP_001174286.1| Os05g0235100, partial [Oryza sativa Japonica... 57 5e-11
gb|AAM08751.1|AC025098_18 Putative copia-type polyprotein [Oryza... 51 6e-11
gb|AAG13591.2|AC051633_7 putative gag/pol polyprotein [Oryza sat... 51 6e-11
gb|ABB47941.2| retrotransposon protein, putative, unclassified [... 51 6e-11
gb|AAG46116.1|AC073166_14 putative copia-like retrotransposon po... 51 6e-11
gb|AAL34933.1|AC079037_6 Putative gag-pol polyprotein [Oryza sat... 51 6e-11
gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Ar... 65 7e-11
>emb|CAN72527.1| hypothetical protein VITISV_009255 [Vitis vinifera]
Length = 1095
Score = 65.5 bits (158), Expect(3) = 3e-13
Identities = 33/54 (61%), Positives = 42/54 (77%)
Frame = +3
Query: 177 SCKKQPTVSRSTTQAEYRALACCASEVLWLRNLLYELHVSLPFKPNILSDNFSA 338
S KKQPTVSRS+ ++EYRALA A+EVLWL +LL +L V+L +P +L DN SA
Sbjct: 951 SAKKQPTVSRSSCESEYRALALTAAEVLWLTHLLRDLRVTLTHRPLLLCDNNSA 1004
Score = 33.9 bits (76), Expect(3) = 3e-13
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +2
Query: 86 AISNTDGVGCLDNRRSTTSYCIFLG 160
A S+ D GC D RRST+ Y IFLG
Sbjct: 920 AYSDADWAGCPDTRRSTSGYSIFLG 944
Score = 21.2 bits (43), Expect(3) = 3e-13
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 13 VLWYVKDRIDLGIHLTPCSS 72
+L YV+ + G+ T CSS
Sbjct: 896 ILRYVQGTLHFGLKFTSCSS 915
>emb|CAN73071.1| hypothetical protein VITISV_032383 [Vitis vinifera]
Length = 1239
Score = 66.6 bits (161), Expect(2) = 8e-13
Identities = 32/54 (59%), Positives = 43/54 (79%)
Frame = +3
Query: 177 SCKKQPTVSRSTTQAEYRALACCASEVLWLRNLLYELHVSLPFKPNILSDNFSA 338
S KKQPTVSRS+ ++EYRALA A+E+LWL +LL++L V +P +P +L DN SA
Sbjct: 1092 SAKKQPTVSRSSCESEYRALAMTAAELLWLTHLLHDLKVPIPXQPLLLCDNKSA 1145
Score = 33.1 bits (74), Expect(2) = 8e-13
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 68 LPPT*HAISNTDGVGCLDNRRSTTSYCIFLG 160
+P A S+ D GC D RRST+ Y I+LG
Sbjct: 1055 IPSALVAYSDADWAGCPDTRRSTSGYSIYLG 1085
>emb|CAN67588.1| hypothetical protein VITISV_036280 [Vitis vinifera]
Length = 1379
Score = 63.9 bits (154), Expect(3) = 1e-12
Identities = 32/54 (59%), Positives = 42/54 (77%)
Frame = +3
Query: 177 SCKKQPTVSRSTTQAEYRALACCASEVLWLRNLLYELHVSLPFKPNILSDNFSA 338
S KKQPTVSRS+ ++EYRALA A++VLWL +LL +L V+L +P +L DN SA
Sbjct: 662 SAKKQPTVSRSSCESEYRALALTAAKVLWLTHLLRDLRVTLTHRPLLLCDNKSA 715
Score = 33.9 bits (76), Expect(3) = 1e-12
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +2
Query: 86 AISNTDGVGCLDNRRSTTSYCIFLG 160
A S+ D GC D RRST+ Y IFLG
Sbjct: 631 AYSDADWAGCPDTRRSTSGYSIFLG 655
Score = 21.2 bits (43), Expect(3) = 1e-12
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 13 VLWYVKDRIDLGIHLTPCSS 72
+L YV+ + G+ T CSS
Sbjct: 607 ILRYVQGTLHFGLKFTSCSS 626
>ref|XP_002445564.1| hypothetical protein SORBIDRAFT_07g021665 [Sorghum bicolor]
gi|241941914|gb|EES15059.1| hypothetical protein
SORBIDRAFT_07g021665, partial [Sorghum bicolor]
Length = 599
Score = 61.6 bits (148), Expect(2) = 1e-12
Identities = 32/54 (59%), Positives = 38/54 (70%)
Frame = +3
Query: 177 SCKKQPTVSRSTTQAEYRALACCASEVLWLRNLLYELHVSLPFKPNILSDNFSA 338
S K+QPTVSRS+ +AEYRA+A A+E WLRNLL ELHV + I DN SA
Sbjct: 520 SSKRQPTVSRSSAEAEYRAVANAAAECCWLRNLLQELHVHVGKATVIYCDNISA 573
Score = 37.7 bits (86), Expect(2) = 1e-12
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = +2
Query: 86 AISNTDGVGCLDNRRSTTSYCIFLG 160
A S+ D GC D RRST+ YCIFLG
Sbjct: 489 AYSDADWAGCPDTRRSTSGYCIFLG 513
>emb|CAN69607.1| hypothetical protein VITISV_009561 [Vitis vinifera]
Length = 1207
Score = 65.1 bits (157), Expect(2) = 2e-12
Identities = 31/54 (57%), Positives = 43/54 (79%)
Frame = +3
Query: 177 SCKKQPTVSRSTTQAEYRALACCASEVLWLRNLLYELHVSLPFKPNILSDNFSA 338
S KKQPTVSRS+ ++EYRALA A+E+LWL +LL++L+V +P +P +L DN A
Sbjct: 1113 SAKKQPTVSRSSCESEYRALAMTAAELLWLTHLLHDLNVPIPQQPLLLCDNKGA 1166
Score = 33.1 bits (74), Expect(2) = 2e-12
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 68 LPPT*HAISNTDGVGCLDNRRSTTSYCIFLG 160
+P A S+ D GC D RRST+ Y I+LG
Sbjct: 1076 IPSALVAYSDADWAGCPDTRRSTSGYSIYLG 1106
>emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera]
Length = 1002
Score = 56.2 bits (134), Expect(3) = 1e-11
Identities = 30/54 (55%), Positives = 37/54 (68%)
Frame = +3
Query: 177 SCKKQPTVSRSTTQAEYRALACCASEVLWLRNLLYELHVSLPFKPNILSDNFSA 338
S +KQP V+RS+T+AEYRALA + EV WLR+L EL +SL P I DN A
Sbjct: 877 SSRKQPVVARSSTKAEYRALAHASXEVAWLRSLFSELGISLVNTPVIWCDNQGA 930
Score = 32.7 bits (73), Expect(3) = 1e-11
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 92 SNTDGVGCLDNRRSTTSYCIFLG 160
++ D +D+RRSTT YC+FLG
Sbjct: 848 TDADWASSIDDRRSTTGYCVFLG 870
Score = 26.6 bits (57), Expect(3) = 1e-11
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 13 VLWYVKDRIDLGIHLTPCSSPHM 81
VL Y+K + G+H TP SS H+
Sbjct: 822 VLRYLKGIVHRGLHFTPASSLHL 844
>emb|CAB10381.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268351|emb|CAB78644.1| retrotransposon like protein
[Arabidopsis thaliana]
Length = 326
Score = 60.8 bits (146), Expect(3) = 1e-11
Identities = 29/54 (53%), Positives = 39/54 (72%)
Frame = +3
Query: 177 SCKKQPTVSRSTTQAEYRALACCASEVLWLRNLLYELHVSLPFKPNILSDNFSA 338
S KKQPTVSRS+T+AEYR+L+ A E+ W+ +LL EL + LP P + DN S+
Sbjct: 140 SSKKQPTVSRSSTEAEYRSLSETAQEMTWICHLLRELGIPLPVTPELYGDNLSS 193
Score = 34.3 bits (77), Expect(3) = 1e-11
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +2
Query: 86 AISNTDGVGCLDNRRSTTSYCIFLG 160
A S++D GC D RRST YC FLG
Sbjct: 109 AYSDSDWGGCKDTRRSTGGYCTFLG 133
Score = 20.4 bits (41), Expect(3) = 1e-11
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +1
Query: 13 VLWYVKDRIDLGIHLT 60
+L YVK + +GIH +
Sbjct: 73 ILRYVKGTLSMGIHFS 88
>gb|ABA91195.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 978
Score = 57.0 bits (136), Expect(2) = 1e-11
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = +3
Query: 177 SCKKQPTVSRSTTQAEYRALACCASEVLWLRNLLYELHVSLPFKPNILSDNFSA 338
S K++ TVSRS+ +AEYRA+A +E WLR LL+ELH+SL + DN SA
Sbjct: 895 SSKRRTTVSRSSAEAEYRAVAHVVAECCWLRQLLFELHISLTSATVVYCDNVSA 948
Score = 38.9 bits (89), Expect(2) = 1e-11
Identities = 22/47 (46%), Positives = 28/47 (59%)
Frame = +2
Query: 20 GTSKIELILAFT*LHALPPT*HAISNTDGVGCLDNRRSTTSYCIFLG 160
GT I L L T + +L A S+ D GC D+RRST+ YC+FLG
Sbjct: 846 GTLHIGLHLGTTLVDSLT----AYSHADWAGCPDSRRSTSGYCVFLG 888
>ref|XP_009350454.1| PREDICTED: nuclear cap-binding protein subunit 1-like [Pyrus x
bretschneideri] gi|694449771|ref|XP_009350455.1|
PREDICTED: nuclear cap-binding protein subunit 1-like
[Pyrus x bretschneideri]
Length = 854
Score = 59.3 bits (142), Expect(2) = 3e-11
Identities = 28/54 (51%), Positives = 38/54 (70%)
Frame = +3
Query: 177 SCKKQPTVSRSTTQAEYRALACCASEVLWLRNLLYELHVSLPFKPNILSDNFSA 338
S KKQ TV+RS+T+AEYR+LA A+E++W +L +LH LP P + DN SA
Sbjct: 125 SAKKQSTVARSSTEAEYRSLAHIAAEIIWACKILRDLHFPLPTLPKLWCDNISA 178
Score = 35.0 bits (79), Expect(2) = 3e-11
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 86 AISNTDGVGCLDNRRSTTSYCIFLG 160
A S+ D GC +RRST+ YC+FLG
Sbjct: 94 AYSDADWAGCTFDRRSTSGYCVFLG 118
>emb|CAN65555.1| hypothetical protein VITISV_009833 [Vitis vinifera]
Length = 325
Score = 61.2 bits (147), Expect(2) = 3e-11
Identities = 30/54 (55%), Positives = 39/54 (72%)
Frame = +3
Query: 177 SCKKQPTVSRSTTQAEYRALACCASEVLWLRNLLYELHVSLPFKPNILSDNFSA 338
S KKQ TVSRS+ +AEYR+LA A+++ W+ LL +LHV+L P IL DN SA
Sbjct: 188 SSKKQSTVSRSSAEAEYRSLAVAAADIAWIIQLLRDLHVTLSVPPKILCDNQSA 241
Score = 33.1 bits (74), Expect(2) = 3e-11
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +2
Query: 92 SNTDGVGCLDNRRSTTSYCIFLG 160
S+ D GC D RRSTT Y IF G
Sbjct: 159 SDADWAGCPDTRRSTTGYAIFFG 181
>ref|XP_006595215.1| PREDICTED: uncharacterized mitochondrial protein AtMg00810-like
[Glycine max]
Length = 275
Score = 60.1 bits (144), Expect(3) = 5e-11
Identities = 32/61 (52%), Positives = 41/61 (67%)
Frame = +3
Query: 156 LVRSCA*SCKKQPTVSRSTTQAEYRALACCASEVLWLRNLLYELHVSLPFKPNILSDNFS 335
L+ CA KKQPTVS S+T+AEYRA+A E+ WL LL++L +SLP P + DN S
Sbjct: 153 LISWCA---KKQPTVSHSSTEAEYRAMANTTVELTWLTFLLHDLRISLPSLPLLYCDNLS 209
Query: 336 A 338
A
Sbjct: 210 A 210
Score = 28.5 bits (62), Expect(3) = 5e-11
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 86 AISNTDGVGCLDNRRSTTSYCIFLG 160
A S+ D RRSTT YCI+LG
Sbjct: 126 AFSDADWACSPTTRRSTTGYCIYLG 150
Score = 24.6 bits (52), Expect(3) = 5e-11
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 1 VAQCVLWYVKDRIDLGIHLT 60
+A +L YVK ID+G+H T
Sbjct: 98 MAHRILRYVKGTIDVGLHFT 117
>gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1480
Score = 56.6 bits (135), Expect(2) = 5e-11
Identities = 29/54 (53%), Positives = 36/54 (66%)
Frame = +3
Query: 177 SCKKQPTVSRSTTQAEYRALACCASEVLWLRNLLYELHVSLPFKPNILSDNFSA 338
S K+Q TVSRS+ +AEYRA+A +E WLR LL ELH+SL + DN SA
Sbjct: 1351 SSKRQTTVSRSSAEAEYRAVAHAIAECCWLRQLLSELHISLTSATVVYCDNVSA 1404
Score = 37.0 bits (84), Expect(2) = 5e-11
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +2
Query: 20 GTSKIELILAFT*LHALPPT*HAISNTDGVGCLDNRRSTTSYCIFLG 160
GT I L L T + +L A S+ D GC D+ RST+ YC+FLG
Sbjct: 1302 GTLHIGLHLGTTPVDSLT----AYSDADWAGCPDSHRSTSGYCVFLG 1344
>ref|XP_002489309.1| hypothetical protein SORBIDRAFT_0010s008890 [Sorghum bicolor]
gi|241946957|gb|EES20102.1| hypothetical protein
SORBIDRAFT_0010s008890 [Sorghum bicolor]
Length = 1017
Score = 52.4 bits (124), Expect(2) = 5e-11
Identities = 27/54 (50%), Positives = 35/54 (64%)
Frame = +3
Query: 177 SCKKQPTVSRSTTQAEYRALACCASEVLWLRNLLYELHVSLPFKPNILSDNFSA 338
S K+Q TVSRS+ +AEYRA+A +E +WLR LL E +V +P DN SA
Sbjct: 768 SSKRQATVSRSSAEAEYRAVANAVAECIWLRQLLGEHYVDVPSATIAYCDNISA 821
Score = 41.2 bits (95), Expect(2) = 5e-11
Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +2
Query: 59 LHALP--PT*HAISNTDGVGCLDNRRSTTSYCIFLG 160
LH +P PT A S+ D GC D RRST+ YCI+LG
Sbjct: 726 LHGVPSTPTIIAYSDADWAGCPDTRRSTSGYCIYLG 761
>ref|NP_001174286.1| Os05g0235100, partial [Oryza sativa Japonica Group]
gi|255676152|dbj|BAH93014.1| Os05g0235100, partial
[Oryza sativa Japonica Group]
Length = 841
Score = 56.6 bits (135), Expect(2) = 5e-11
Identities = 29/54 (53%), Positives = 36/54 (66%)
Frame = +3
Query: 177 SCKKQPTVSRSTTQAEYRALACCASEVLWLRNLLYELHVSLPFKPNILSDNFSA 338
S K+Q TVSRS+ +AEYRA+A +E WLR LL ELH+SL + DN SA
Sbjct: 712 SSKRQTTVSRSSAEAEYRAVAHAIAECCWLRQLLSELHISLTSATVVYCDNVSA 765
Score = 37.0 bits (84), Expect(2) = 5e-11
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +2
Query: 20 GTSKIELILAFT*LHALPPT*HAISNTDGVGCLDNRRSTTSYCIFLG 160
GT I L L T + +L A S+ D GC D+ RST+ YC+FLG
Sbjct: 663 GTLHIGLHLGTTPVDSLT----AYSDADWAGCPDSHRSTSGYCVFLG 705
>gb|AAM08751.1|AC025098_18 Putative copia-type polyprotein [Oryza sativa Japonica Group]
Length = 1803
Score = 50.8 bits (120), Expect(3) = 6e-11
Identities = 26/54 (48%), Positives = 33/54 (61%)
Frame = +3
Query: 177 SCKKQPTVSRSTTQAEYRALACCASEVLWLRNLLYELHVSLPFKPNILSDNFSA 338
S K+Q TVSRS+ +AEYR +A +E WLR LL ELH +P DN S+
Sbjct: 1280 SSKRQTTVSRSSAEAEYRGVANAVAECTWLRQLLGELHCRVPQATIAYCDNISS 1333
Score = 38.9 bits (89), Expect(3) = 6e-11
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +2
Query: 74 PT*HAISNTDGVGCLDNRRSTTSYCIFLG 160
PT A S+ D GC D RRST+ +CIFLG
Sbjct: 1245 PTLTAFSDADWAGCPDTRRSTSGFCIFLG 1273
Score = 23.1 bits (48), Expect(3) = 6e-11
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 13 VLWYVKDRIDLGIHLTPCSSPHMT 84
+L Y+K G+HL +SP +T
Sbjct: 1225 ILRYIKGTAAFGLHLRASTSPTLT 1248
>gb|AAG13591.2|AC051633_7 putative gag/pol polyprotein [Oryza sativa Japonica Group]
Length = 1417
Score = 50.8 bits (120), Expect(3) = 6e-11
Identities = 26/54 (48%), Positives = 33/54 (61%)
Frame = +3
Query: 177 SCKKQPTVSRSTTQAEYRALACCASEVLWLRNLLYELHVSLPFKPNILSDNFSA 338
S K+Q TVSRS+ +AEYR +A +E WLR LL ELH +P DN S+
Sbjct: 1248 SSKRQTTVSRSSAEAEYRGVANAVAECTWLRQLLGELHCRVPQATIAYCDNISS 1301
Score = 38.9 bits (89), Expect(3) = 6e-11
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +2
Query: 74 PT*HAISNTDGVGCLDNRRSTTSYCIFLG 160
PT A S+ D GC D RRST+ +CIFLG
Sbjct: 1213 PTLTAFSDADWAGCPDTRRSTSGFCIFLG 1241
Score = 23.1 bits (48), Expect(3) = 6e-11
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 13 VLWYVKDRIDLGIHLTPCSSPHMT 84
+L Y+K G+HL +SP +T
Sbjct: 1193 ILRYIKGTAAFGLHLRASTSPTLT 1216
>gb|ABB47941.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1414
Score = 50.8 bits (120), Expect(3) = 6e-11
Identities = 26/54 (48%), Positives = 33/54 (61%)
Frame = +3
Query: 177 SCKKQPTVSRSTTQAEYRALACCASEVLWLRNLLYELHVSLPFKPNILSDNFSA 338
S K+Q TVSRS+ +AEYR +A +E WLR LL ELH +P DN S+
Sbjct: 1245 SSKRQTTVSRSSAEAEYRGVANAVAECTWLRQLLGELHCRVPQATIAYCDNISS 1298
Score = 38.9 bits (89), Expect(3) = 6e-11
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +2
Query: 74 PT*HAISNTDGVGCLDNRRSTTSYCIFLG 160
PT A S+ D GC D RRST+ +CIFLG
Sbjct: 1210 PTLTAFSDADWAGCPDTRRSTSGFCIFLG 1238
Score = 23.1 bits (48), Expect(3) = 6e-11
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 13 VLWYVKDRIDLGIHLTPCSSPHMT 84
+L Y+K G+HL +SP +T
Sbjct: 1190 ILRYIKGTAAFGLHLRASTSPTLT 1213
>gb|AAG46116.1|AC073166_14 putative copia-like retrotransposon polyprotein [Oryza sativa
Japonica Group]
Length = 1302
Score = 50.8 bits (120), Expect(3) = 6e-11
Identities = 26/54 (48%), Positives = 33/54 (61%)
Frame = +3
Query: 177 SCKKQPTVSRSTTQAEYRALACCASEVLWLRNLLYELHVSLPFKPNILSDNFSA 338
S K+Q TVSRS+ +AEYR +A +E WLR LL ELH +P DN S+
Sbjct: 1150 SSKRQTTVSRSSAEAEYRGVANAVAECTWLRQLLGELHCRVPQATIAYCDNISS 1203
Score = 38.9 bits (89), Expect(3) = 6e-11
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +2
Query: 74 PT*HAISNTDGVGCLDNRRSTTSYCIFLG 160
PT A S+ D GC D RRST+ +CIFLG
Sbjct: 1115 PTLTAFSDADWAGCPDTRRSTSGFCIFLG 1143
Score = 23.1 bits (48), Expect(3) = 6e-11
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 13 VLWYVKDRIDLGIHLTPCSSPHMT 84
+L Y+K G+HL +SP +T
Sbjct: 1095 ILRYIKGTAAFGLHLRASTSPTLT 1118
>gb|AAL34933.1|AC079037_6 Putative gag-pol polyprotein [Oryza sativa]
gi|31429888|gb|AAP51877.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 725
Score = 50.8 bits (120), Expect(3) = 6e-11
Identities = 26/54 (48%), Positives = 33/54 (61%)
Frame = +3
Query: 177 SCKKQPTVSRSTTQAEYRALACCASEVLWLRNLLYELHVSLPFKPNILSDNFSA 338
S K+Q TVSRS+ +AEYR +A +E WLR LL ELH +P DN S+
Sbjct: 556 SSKRQTTVSRSSAEAEYRGVANAVAECTWLRQLLGELHCRVPQATIAYCDNISS 609
Score = 38.9 bits (89), Expect(3) = 6e-11
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +2
Query: 74 PT*HAISNTDGVGCLDNRRSTTSYCIFLG 160
PT A S+ D GC D RRST+ +CIFLG
Sbjct: 521 PTLTAFSDADWAGCPDTRRSTSGFCIFLG 549
Score = 23.1 bits (48), Expect(3) = 6e-11
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 13 VLWYVKDRIDLGIHLTPCSSPHMT 84
+L Y+K G+HL +SP +T
Sbjct: 501 ILRYIKGTAAFGLHLRASTSPTLT 524
>gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Arabidopsis thaliana]
Length = 1522
Score = 64.7 bits (156), Expect(2) = 7e-11
Identities = 31/54 (57%), Positives = 41/54 (75%)
Frame = +3
Query: 177 SCKKQPTVSRSTTQAEYRALACCASEVLWLRNLLYELHVSLPFKPNILSDNFSA 338
S KKQPTVSRS+T+AEYR+L+ ASE+ W+ ++L E+ VSLP P + DN SA
Sbjct: 1310 SSKKQPTVSRSSTEAEYRSLSETASEIKWMSSILREIGVSLPDTPELFCDNLSA 1363
Score = 28.5 bits (62), Expect(2) = 7e-11
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 86 AISNTDGVGCLDNRRSTTSYCIFLG 160
A S++D C + RRS YC F+G
Sbjct: 1279 AYSDSDYANCKETRRSVGGYCTFMG 1303