BLASTX nr result

ID: Forsythia21_contig00052627 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia21_contig00052627
         (256 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P84786.1|RIP_DRIMA RecName: Full=Ribosome-inactivating protei...    84   3e-14
gb|AAM89506.1|AF289118_1 type 1 ribosome-inactivating protein mu...    64   3e-08

>sp|P84786.1|RIP_DRIMA RecName: Full=Ribosome-inactivating protein charybdin; AltName:
           Full=rRNA N-glycosidase [Drimia maritima]
           gi|110590853|pdb|2B7U|A Chain A, Ribosome Inactivating
           Protein Type 1 From Charybdis Maritima Agg
          Length = 257

 Score = 84.3 bits (207), Expect = 3e-14
 Identities = 39/86 (45%), Positives = 61/86 (70%), Gaps = 1/86 (1%)
 Frame = -2

Query: 255 SRFIDISDYFASKLXXXXSVFLPTWMRT-LENDWGRFSTIVLYADAFPCYVYQPRTINGE 79
           +RF+DI+++FA  L     V LP WM+  LE +W RFS ++L ++A PCY ++P+TI G+
Sbjct: 169 TRFVDIANHFAFNLESSEPVKLPQWMQNDLEKNWVRFSFMILKSNADPCYKFEPQTIYGK 228

Query: 78  VMKTVADLRDKLGILLRNPDTLKPPC 1
           ++KT  +L + LGI+ ++PDT  PPC
Sbjct: 229 IIKTADELLNFLGIVEQHPDTRSPPC 254


>gb|AAM89506.1|AF289118_1 type 1 ribosome-inactivating protein musarmin 1 [Muscari
           armeniacum]
          Length = 295

 Score = 64.3 bits (155), Expect = 3e-08
 Identities = 37/76 (48%), Positives = 44/76 (57%)
 Frame = -2

Query: 255 SRFIDISDYFASKLXXXXSVFLPTWMRTLENDWGRFSTIVLYADAFPCYVYQPRTINGEV 76
           +RFI ISD+FAS L    +   P  M  LE +W R S  VL  DA   Y  QP+TING+ 
Sbjct: 189 TRFIPISDHFASNLATDYAKLPPWMMSDLEKNWARISREVLKWDADTSYKIQPQTINGQT 248

Query: 75  MKTVADLRDKLGILLR 28
           + TV  LR  LGIL R
Sbjct: 249 ITTVEGLRPYLGILYR 264


Top