BLASTX nr result

ID: Forsythia21_contig00044330 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia21_contig00044330
         (210 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADB85290.1| putative retrotransposon protein [Phyllostachys e...    68   3e-09
emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa Japonica Group]         59   2e-06

>gb|ADB85290.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 592

 Score = 67.8 bits (164), Expect = 3e-09
 Identities = 30/68 (44%), Positives = 47/68 (69%)
 Frame = -2

Query: 209 STFTPASVTEIMASYEGDEEAQKEIQASTISGSTEYEYQYKNGLLRHKGKLYIGSEEGLR 30
           S  TP  + E++ASYEGDE+ +  I   +IS + +  Y  KNG+LR+KG+LYIGS  GL+
Sbjct: 242 SAVTPVWILEVLASYEGDEKCRDLITQISISPTAQPNYSLKNGILRYKGRLYIGSNTGLK 301

Query: 29  QKIIESIH 6
           ++++ + H
Sbjct: 302 RQLLVTFH 309


>emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa Japonica Group]
          Length = 1586

 Score = 58.5 bits (140), Expect = 2e-06
 Identities = 27/69 (39%), Positives = 41/69 (59%)
 Frame = -2

Query: 209  STFTPASVTEIMASYEGDEEAQKEIQASTISGSTEYEYQYKNGLLRHKGKLYIGSEEGLR 30
            +T  P  V +I  SYEGD +A K +      G T+  Y  + GLLR+KG++Y+G    +R
Sbjct: 1107 TTVIPEWVRDIQRSYEGDVQAHKILSLIGTEGDTDGSYSQEAGLLRYKGRIYVGENTEIR 1166

Query: 29   QKIIESIHS 3
            +++I S HS
Sbjct: 1167 EELIRSYHS 1175


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