BLASTX nr result

ID: Forsythia21_contig00037780 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia21_contig00037780
         (869 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009785631.1| PREDICTED: uncharacterized protein LOC104233...    64   2e-15
ref|XP_009614795.1| PREDICTED: uncharacterized protein LOC104107...    61   1e-14
ref|XP_007013558.1| SPOC domain / Transcription elongation facto...    62   6e-07
ref|XP_007013557.1| SPOC domain / Transcription elongation facto...    62   6e-07

>ref|XP_009785631.1| PREDICTED: uncharacterized protein LOC104233870 [Nicotiana
            sylvestris] gi|698476697|ref|XP_009785632.1| PREDICTED:
            uncharacterized protein LOC104233870 [Nicotiana
            sylvestris]
          Length = 883

 Score = 63.9 bits (154), Expect(2) = 2e-15
 Identities = 57/180 (31%), Positives = 74/180 (41%), Gaps = 49/180 (27%)
 Frame = -3

Query: 858  ITSKGFEQQLQETKTYWVQNSK---MEQSKTSSELQKAVISFPCTAIKPNMHVGDDDDLP 688
            + S  F+Q+  E  +  +  SK   +E  K S++L KAV S    A KP +   +DDDLP
Sbjct: 599  VKSPTFQQKESELSSSHLWGSKGHFLEPLKESTDLPKAVTSLLPDASKPKVAFSEDDDLP 658

Query: 687  EFDFGTACEMPLAS-------VGRNLRPRGIRISDGLVVQNLSIKNSVSLATHKS----- 544
            EFDFGTA  +  +S       +   L+  G RI D      + I  SVS +  +S     
Sbjct: 659  EFDFGTASGISSSSHRSDGSILDSRLQLSGSRILDMSKQPTIPIAPSVSTSIPRSISSLS 718

Query: 543  ----------------------------------SLDEINKKKLFSDDDDMPEWLPPKPQ 466
                                               LD   KK LF  DDDMPEWLPP  Q
Sbjct: 719  QSMPLAKNVADHGHPKSIGGPVAVTAYASGLPLIPLDNSGKKSLFC-DDDMPEWLPPDAQ 777



 Score = 46.6 bits (109), Expect(2) = 2e-15
 Identities = 27/72 (37%), Positives = 35/72 (48%)
 Frame = -1

Query: 404  QLPEIHLGALQVPCLPLSTLXXXXXXXXXXXXXHRQPPNLRVPPPIPFQNGQRPSTGFTF 225
            +LP +  G++     P ST              +  P N +VPPPIP Q G    TGFTF
Sbjct: 799  KLPPLPTGSVYP--YPSSTTMHSGFPSRPSPPLYHLPANSKVPPPIPSQTGPSYLTGFTF 856

Query: 224  IPASQPVSGSIP 189
             PA +P S S+P
Sbjct: 857  NPAPRPQSSSLP 868


>ref|XP_009614795.1| PREDICTED: uncharacterized protein LOC104107643 [Nicotiana
            tomentosiformis] gi|697121635|ref|XP_009614796.1|
            PREDICTED: uncharacterized protein LOC104107643
            [Nicotiana tomentosiformis]
          Length = 857

 Score = 60.8 bits (146), Expect(2) = 1e-14
 Identities = 53/160 (33%), Positives = 65/160 (40%), Gaps = 46/160 (28%)
 Frame = -3

Query: 789  EQSKTSSELQKAVISFPCTAIKPNMHVGDDDDLPEFDFGTACEMPLAS-------VGRNL 631
            E  K S++L K V S    A KP M   +DDDLPEFDFGTA  +  +S       +   L
Sbjct: 595  EPPKGSTDLPKVVTSLLPDASKPKMVFSEDDDLPEFDFGTASGISSSSHRSDGSILDNRL 654

Query: 630  RPRGIRISDGLVVQNLSIKNSVSLATHKS------------------------------- 544
            +  G RI D      L I  SVS++  +S                               
Sbjct: 655  QLSGSRILDMSKQPILPIAPSVSMSIPRSISSVSQSMPLAKNVTDHGHPKSIGGPVAVTV 714

Query: 543  --------SLDEINKKKLFSDDDDMPEWLPPKPQIQSSAE 448
                     LD   KK LF  DDDMPEWLPP  Q + + E
Sbjct: 715  SASGSPLIPLDNSGKKSLFC-DDDMPEWLPPDGQDERTNE 753



 Score = 46.6 bits (109), Expect(2) = 1e-14
 Identities = 27/72 (37%), Positives = 35/72 (48%)
 Frame = -1

Query: 404 QLPEIHLGALQVPCLPLSTLXXXXXXXXXXXXXHRQPPNLRVPPPIPFQNGQRPSTGFTF 225
           +LP +  G++     P ST              +  P N +VPPPIP Q G    TGFTF
Sbjct: 773 RLPPLPTGSVYP--YPSSTTMHSGFSSRPSPPLYHLPANSKVPPPIPSQTGPSYLTGFTF 830

Query: 224 IPASQPVSGSIP 189
            PA +P S S+P
Sbjct: 831 NPAPRPQSSSLP 842


>ref|XP_007013558.1| SPOC domain / Transcription elongation factor S-II protein,
           putative isoform 2 [Theobroma cacao]
           gi|508783921|gb|EOY31177.1| SPOC domain / Transcription
           elongation factor S-II protein, putative isoform 2
           [Theobroma cacao]
          Length = 426

 Score = 61.6 bits (148), Expect = 6e-07
 Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
 Frame = -3

Query: 861 SITSKGFEQQLQETKTYWVQNSKMEQSKTSSELQKAVISFPCTAIKPNMHVGDDDDLPEF 682
           S+   G + Q  E +     NS+  + K+S  LQ  V+S P    K ++   DDDDLPEF
Sbjct: 131 SVCHFGPKGQSSEREMSLTANSESGKPKSSLGLQNPVLSLPSVITKEHIPAADDDDLPEF 190

Query: 681 DFGTACEMPLASVGRNLRPRGIRISDGLVVQNL-SIKNSVSLATHKSSLDEINKKKLFSD 505
           DFGTAC+  ++   RN           ++V+ L  I  S+ L +   SL   NK++  ++
Sbjct: 191 DFGTACD--ISQTPRNKVLDNAEFHKNVLVEGLKKIVGSLPLTSTIQSLPSSNKRR--AE 246

Query: 504 DDDMPEW-------LPPKPQI 463
           +  +PE+       LPP+ ++
Sbjct: 247 NFPLPEFSFDTILNLPPRKKV 267


>ref|XP_007013557.1| SPOC domain / Transcription elongation factor S-II protein,
           putative isoform 1 [Theobroma cacao]
           gi|508783920|gb|EOY31176.1| SPOC domain / Transcription
           elongation factor S-II protein, putative isoform 1
           [Theobroma cacao]
          Length = 573

 Score = 61.6 bits (148), Expect = 6e-07
 Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
 Frame = -3

Query: 861 SITSKGFEQQLQETKTYWVQNSKMEQSKTSSELQKAVISFPCTAIKPNMHVGDDDDLPEF 682
           S+   G + Q  E +     NS+  + K+S  LQ  V+S P    K ++   DDDDLPEF
Sbjct: 278 SVCHFGPKGQSSEREMSLTANSESGKPKSSLGLQNPVLSLPSVITKEHIPAADDDDLPEF 337

Query: 681 DFGTACEMPLASVGRNLRPRGIRISDGLVVQNL-SIKNSVSLATHKSSLDEINKKKLFSD 505
           DFGTAC+  ++   RN           ++V+ L  I  S+ L +   SL   NK++  ++
Sbjct: 338 DFGTACD--ISQTPRNKVLDNAEFHKNVLVEGLKKIVGSLPLTSTIQSLPSSNKRR--AE 393

Query: 504 DDDMPEW-------LPPKPQI 463
           +  +PE+       LPP+ ++
Sbjct: 394 NFPLPEFSFDTILNLPPRKKV 414


Top