BLASTX nr result

ID: Forsythia21_contig00035825 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia21_contig00035825
         (367 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011087751.1| PREDICTED: pentatricopeptide repeat-containi...    64   5e-08
ref|XP_011087749.1| PREDICTED: pentatricopeptide repeat-containi...    64   5e-08
ref|XP_012850301.1| PREDICTED: pentatricopeptide repeat-containi...    60   6e-07

>ref|XP_011087751.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
           chloroplastic isoform X2 [Sesamum indicum]
          Length = 643

 Score = 63.5 bits (153), Expect = 5e-08
 Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
 Frame = -2

Query: 273 VCSVFGNGFHPIFCLTSTRTIKNYRXXXXXXXXXXXXXXXXT--------KHSEIQSGPI 118
           V S+ GN   P+FC ++TR +KN++                         + SE+ S P+
Sbjct: 3   VFSLLGNSSQPVFCFSTTRPVKNFKPIAATVATPAAAEGISASVSSNGTEERSEVWSKPL 62

Query: 117 YVTEKSLKNLSVSSKIRQSAIIDIQQSTDLAAALLRSGE 1
            V++ + KNLS   K R+SAI+DIQ S++LA+AL RSG+
Sbjct: 63  TVSKHNPKNLSAPYKARESAILDIQHSSELASALSRSGK 101


>ref|XP_011087749.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
           chloroplastic isoform X1 [Sesamum indicum]
           gi|747080967|ref|XP_011087750.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g10910,
           chloroplastic isoform X1 [Sesamum indicum]
          Length = 668

 Score = 63.5 bits (153), Expect = 5e-08
 Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
 Frame = -2

Query: 273 VCSVFGNGFHPIFCLTSTRTIKNYRXXXXXXXXXXXXXXXXT--------KHSEIQSGPI 118
           V S+ GN   P+FC ++TR +KN++                         + SE+ S P+
Sbjct: 3   VFSLLGNSSQPVFCFSTTRPVKNFKPIAATVATPAAAEGISASVSSNGTEERSEVWSKPL 62

Query: 117 YVTEKSLKNLSVSSKIRQSAIIDIQQSTDLAAALLRSGE 1
            V++ + KNLS   K R+SAI+DIQ S++LA+AL RSG+
Sbjct: 63  TVSKHNPKNLSAPYKARESAILDIQHSSELASALSRSGK 101


>ref|XP_012850301.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
           chloroplastic [Erythranthe guttatus]
           gi|604313208|gb|EYU26539.1| hypothetical protein
           MIMGU_mgv1a002527mg [Erythranthe guttata]
          Length = 663

 Score = 60.1 bits (144), Expect = 6e-07
 Identities = 40/102 (39%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
 Frame = -2

Query: 273 VCSVFGNGFHPIFCLTSTR-----------TIKNYRXXXXXXXXXXXXXXXXTKHSEIQS 127
           V  V GNGF P+ CL++TR           T+                     KHS    
Sbjct: 3   VSFVLGNGFQPVSCLSTTRPAKISKHIPATTLATPPPPPPQRVATRAPPNGTEKHSGAPR 62

Query: 126 GPIYVTEKSLKNLSVSSKIRQSAIIDIQQSTDLAAALLRSGE 1
            P  VT     NLS S K R+SAI DIQ ST+LA+AL RSGE
Sbjct: 63  NPTNVTRNIPNNLSASRKARESAITDIQDSTELASALSRSGE 104


Top