BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia21_contig00035696
         (1247 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei...   426   e-116
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   420   e-114
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   399   e-108
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   398   e-108
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   398   e-108
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   395   e-107
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           395   e-107
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   393   e-106
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        388   e-105
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc...   384   e-104
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   384   e-104
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   380   e-102
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   380   e-102
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...   378   e-102
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]           376   e-101
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     373   e-100
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   373   e-100
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     369   3e-99
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     368   5e-99
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   368   6e-99

>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 [Erythranthe guttatus]
          Length = 598

 Score =  426 bits (1096), Expect = e-116
 Identities = 219/411 (53%), Positives = 271/411 (65%), Gaps = 5/411 (1%)
 Frame = +1

Query: 1    CDHCVLGKHHKLSF----STGVHKTKRILEYVHSDLWGPSSNPTSGGNRYFLSIIDDYSR 168
            CD C+LGK   + F    S  + +   ILEY+H+D+WGP+S PT GGNRYFLSIIDDYSR
Sbjct: 178  CDSCILGKQTHVLFPEYPSPNLSRCTEILEYIHADVWGPTSVPTYGGNRYFLSIIDDYSR 237

Query: 169  KVWVYLLKDKSDTFHNFNNWKRQVENLTGKKIKFLRTDNGLEFCNTEFDNMCKESGITRH 348
            KV+V+LLK KSD F  F  WK  +EN TGK+IK LRTDNG+EFCN EFDN+C  SGI RH
Sbjct: 238  KVFVFLLKQKSDVFDKFKTWKTLIENQTGKRIKTLRTDNGIEFCNLEFDNLCANSGIRRH 297

Query: 349  KTVPYTPQQNGVAERMNRTLLDKVRCMMLSSGVPKSFWGEAVMTACYLVNLTPSMALNGD 528
            K+V +TPQQNGVAERMNRTLL++VR M+ SSG+PK FWGEA++TA YL+N +PSM LNGD
Sbjct: 298  KSVVHTPQQNGVAERMNRTLLERVRSMLTSSGLPKLFWGEAILTATYLINRSPSMPLNGD 357

Query: 529  TPHEKWSGKLADYSVLKTFGCAAFSHQSEGKLEPRARKCVFLGYPEGVKGYRLWDRSQKG 708
             P   W GK  D S L  FG AAF H    KLEPR  KC+FLGYP+GVKGYRLW +   G
Sbjct: 358  LPESVWCGKKVDLSNLHVFGYAAFVHHKGDKLEPRFVKCIFLGYPDGVKGYRLWLKGDFG 417

Query: 709  VKIILSRDVTFNEAEMPCLGAGSETLSEKNQLEVELEKISTHVPITPSEVETQILQLEEE 888
             KII+SRDV FNE+  PCL   +  + +    EVE       +PI   +V     +L E 
Sbjct: 418  YKIIISRDVIFNESGFPCLAVPNVVIPQSTPNEVE------QLPIKSDDVSDS--ELSEN 469

Query: 889  GGDVVIEEHSVEEDPLVDYQLXXXXXXXXXXXXXXFGYESELA-FAYASYEELVDREPNT 1065
              D  +E  +V  D L DYQL                 +  LA   +  +E L   EP +
Sbjct: 470  LQDQTVELPNV--DDLSDYQLARDRPRREHVRKPKHFDDFHLASHVFNVFESLDGNEPKS 527

Query: 1066 FEEAMRSEQSEEWLKAMKEEMSSLAKNQTWELVPKPKNKSTVDCKWIFKVK 1218
            +++A++S++S EWL +M +EM+SL  NQTWELVPKP N S VDC W+FKVK
Sbjct: 528  YKDALKSDKSTEWLNSMNDEMNSLHVNQTWELVPKPVNCSVVDCNWLFKVK 578


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  420 bits (1080), Expect = e-114
 Identities = 203/409 (49%), Positives = 277/409 (67%)
 Frame = +1

Query: 1    CDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSGGNRYFLSIIDDYSRKVWV 180
            C+HCV GK  ++ F+  +H+T+  L+Y+HSDLWGPS  P+ GG RYFL++IDDYSRKVW+
Sbjct: 426  CEHCVFGKATRVKFAKAIHETQNQLDYIHSDLWGPSRVPSIGGARYFLTLIDDYSRKVWI 485

Query: 181  YLLKDKSDTFHNFNNWKRQVENLTGKKIKFLRTDNGLEFCNTEFDNMCKESGITRHKTVP 360
            Y LK+KS+TF  F  WK  VE  T +K+K LRTDNGLEF + +F+++C++ GI RH+TV 
Sbjct: 486  YFLKNKSETFLKFKEWKILVETQTSRKVKKLRTDNGLEFLSNDFNSLCQKEGIARHRTVR 545

Query: 361  YTPQQNGVAERMNRTLLDKVRCMMLSSGVPKSFWGEAVMTACYLVNLTPSMALNGDTPHE 540
            YTPQQNG+AERMNRT+L++VRCM+ SSG+ K FW EA  TA +L+N +PS AL   TP E
Sbjct: 546  YTPQQNGLAERMNRTILERVRCMLSSSGLSKVFWAEAAETAVHLINRSPSSALQFKTPQE 605

Query: 541  KWSGKLADYSVLKTFGCAAFSHQSEGKLEPRARKCVFLGYPEGVKGYRLWDRSQKGVKII 720
            KW+GK ADY  LK FGC A+ H    KLEPRA KC+FLGYP+GVKGY+LW  +Q   K I
Sbjct: 606  KWTGKAADYQHLKVFGCTAYVHTKTDKLEPRAVKCIFLGYPKGVKGYKLWIETQGKGKCI 665

Query: 721  LSRDVTFNEAEMPCLGAGSETLSEKNQLEVELEKISTHVPITPSEVETQILQLEEEGGDV 900
            +SRDVTFNE +M      ++ +   +QL+ E+E    H  + P + +    +  +E  ++
Sbjct: 666  ISRDVTFNEQDM-SKQTPAKDVEGLDQLQFEVE----HETLQPEKSKETSSKTAQE--EI 718

Query: 901  VIEEHSVEEDPLVDYQLXXXXXXXXXXXXXXFGYESELAFAYASYEELVDREPNTFEEAM 1080
            V E  +     L  Y L              +G     AFA +  EE+VD EP T++EA+
Sbjct: 719  VHERQNEPTQGLESYNLVRDRQKRQVKPPKRYGQAEMTAFALSVAEEIVDMEPKTYQEAI 778

Query: 1081 RSEQSEEWLKAMKEEMSSLAKNQTWELVPKPKNKSTVDCKWIFKVKEGT 1227
             S ++++W+KA++EEM SL KN+TWELV KPK++  V  KW+FK K+GT
Sbjct: 779  NSNEADQWVKAIQEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGT 827


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  399 bits (1026), Expect = e-108
 Identities = 201/425 (47%), Positives = 266/425 (62%), Gaps = 11/425 (2%)
 Frame = +1

Query: 1    CDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSGGNRYFLSIIDDYSRKVWV 180
            C+HC+ GKH ++ F+T VH TK  L+YVH+DLWGPS  P+ GG RY L+IIDDYSRKVW 
Sbjct: 460  CEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWP 519

Query: 181  YLLKDKSDTFHNFNNWKRQVENLTGKKIKFLRTDNGLEFCNTEFDNMCKESGITRHKTVP 360
            Y LK K DTF  F NWK  +E  T +K+K LRTDNG EFC+  F++ C++ GI RH T+P
Sbjct: 520  YFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIP 579

Query: 361  YTPQQNGVAERMNRTLLDKVRCMMLSSGVPKSFWGEAVMTACYLVNLTPSMALNGDTPHE 540
            +TPQQNGVAERMNRT++ + RCM+  + + K FW EA  TACYL+N +PS+ LN  TP E
Sbjct: 580  HTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIE 639

Query: 541  KWSGKLADYSVLKTFGCAAFSHQSEGKLEPRARKCVFLGYPEGVKGYRLWDRSQKGVKII 720
             WSG  ADYS LK FGC A++H   GKLEPRA KC+FLGY  GVKGY+LW  + +  K  
Sbjct: 640  VWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW--NPETGKTF 697

Query: 721  LSRDVTFNEAEMPCLGAGSETLSEK--NQLEVELEKISTHVPITPSEVETQILQLEEEGG 894
            +SR V FNE+ M      SE + EK   ++ +++E +  +  +    V  Q    ++   
Sbjct: 698  MSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHVDDYTGVQVEPVHEQ----DDHNN 753

Query: 895  DVVIEE--HSVEEDPLV-----DYQLXXXXXXXXXXXXXXFGYESELAFAYASYEELVD- 1050
            DV  ++    V++ P +     +  +                 E  L++   S  E V+ 
Sbjct: 754  DVADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVEN 813

Query: 1051 -REPNTFEEAMRSEQSEEWLKAMKEEMSSLAKNQTWELVPKPKNKSTVDCKWIFKVKEGT 1227
              EP T++EA+R   SE W+ AM EEM SL KN TWE+VP PK K T+ CKWIFK KEG 
Sbjct: 814  VHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGL 873

Query: 1228 CTAEP 1242
             ++EP
Sbjct: 874  SSSEP 878


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  398 bits (1023), Expect = e-108
 Identities = 201/425 (47%), Positives = 265/425 (62%), Gaps = 11/425 (2%)
 Frame = +1

Query: 1    CDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSGGNRYFLSIIDDYSRKVWV 180
            C+HC+ GKH ++ F+T VH TK  L+YVH+DLWGPS  P+ GG RY L+IIDDYSRKVW 
Sbjct: 460  CEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWP 519

Query: 181  YLLKDKSDTFHNFNNWKRQVENLTGKKIKFLRTDNGLEFCNTEFDNMCKESGITRHKTVP 360
            Y LK K DTF  F NWK  +E  T +K+K LRTDNG EFC+  F++ C++ GI RH T+P
Sbjct: 520  YFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIP 579

Query: 361  YTPQQNGVAERMNRTLLDKVRCMMLSSGVPKSFWGEAVMTACYLVNLTPSMALNGDTPHE 540
            +TPQQNGVAERMNRT++ + RCM+  + + K FW EA  TACYL+N +PS+ LN  TP E
Sbjct: 580  HTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIE 639

Query: 541  KWSGKLADYSVLKTFGCAAFSHQSEGKLEPRARKCVFLGYPEGVKGYRLWDRSQKGVKII 720
             WSG  ADYS LK FGC A++H   GKLEPRA KC+FLGY  GVKGY+LW  + +  K  
Sbjct: 640  VWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW--NPETGKTF 697

Query: 721  LSRDVTFNEAEMPCLGAGSETLSEK--NQLEVELEKISTHVPITPSEVETQILQLEEEGG 894
            +SR V FNE+ M      SE + EK   ++ +++E +     +    V  Q    ++   
Sbjct: 698  MSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVHEQ----DDHNN 753

Query: 895  DVVIEE--HSVEEDPLV-----DYQLXXXXXXXXXXXXXXFGYESELAFAYASYEELVD- 1050
            DV  ++    V++ P +     +  +                 E  L++   S  E V+ 
Sbjct: 754  DVADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVEN 813

Query: 1051 -REPNTFEEAMRSEQSEEWLKAMKEEMSSLAKNQTWELVPKPKNKSTVDCKWIFKVKEGT 1227
              EP T++EA+R   SE W+ AM EEM SL KN TWE+VP PK K T+ CKWIFK KEG 
Sbjct: 814  VHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGL 873

Query: 1228 CTAEP 1242
             ++EP
Sbjct: 874  SSSEP 878


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  398 bits (1022), Expect = e-108
 Identities = 200/425 (47%), Positives = 265/425 (62%), Gaps = 11/425 (2%)
 Frame = +1

Query: 1    CDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSGGNRYFLSIIDDYSRKVWV 180
            C+HC+ GKH ++ F+T VH TK  L+YVH+DLWGPS  P+ GG RY L++IDDYSRKVW 
Sbjct: 460  CEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKVWP 519

Query: 181  YLLKDKSDTFHNFNNWKRQVENLTGKKIKFLRTDNGLEFCNTEFDNMCKESGITRHKTVP 360
            Y LK K DTF  F NWK  +E  T +K+K LRTDNG EFC+  F++ C++ GI RH T+P
Sbjct: 520  YFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIP 579

Query: 361  YTPQQNGVAERMNRTLLDKVRCMMLSSGVPKSFWGEAVMTACYLVNLTPSMALNGDTPHE 540
            +TPQQNGVAERMNRT++ + RCM+  + + K FW EA  TACYL+N +PS+ LN  TP E
Sbjct: 580  HTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIE 639

Query: 541  KWSGKLADYSVLKTFGCAAFSHQSEGKLEPRARKCVFLGYPEGVKGYRLWDRSQKGVKII 720
             WSG  ADYS LK FGC A++H   GKLEPRA KC+FLGY  GVKGY+LW  + +  K  
Sbjct: 640  VWSGMPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW--NPETGKTF 697

Query: 721  LSRDVTFNEAEMPCLGAGSETLSEK--NQLEVELEKISTHVPITPSEVETQILQLEEEGG 894
            +SR V FNE+ M      SE + EK   ++ +++E +     +    V  Q    ++   
Sbjct: 698  MSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVHEQ----DDHNN 753

Query: 895  DVVIEE--HSVEEDPLV-----DYQLXXXXXXXXXXXXXXFGYESELAFAYASYEELVD- 1050
            DV  ++    V++ P +     +  +                 E  L++   S  E V+ 
Sbjct: 754  DVADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVEN 813

Query: 1051 -REPNTFEEAMRSEQSEEWLKAMKEEMSSLAKNQTWELVPKPKNKSTVDCKWIFKVKEGT 1227
              EP T++EA+R   SE W+ AM EEM SL KN TWE+VP PK K T+ CKWIFK KEG 
Sbjct: 814  VHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGL 873

Query: 1228 CTAEP 1242
             ++EP
Sbjct: 874  SSSEP 878


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  395 bits (1015), Expect = e-107
 Identities = 197/422 (46%), Positives = 259/422 (61%), Gaps = 8/422 (1%)
 Frame = +1

Query: 1    CDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSGGNRYFLSIIDDYSRKVWV 180
            C+ CV+GK  ++ FS G H T  +LEY+HSDLWGPS   +  G RY+++ IDD+SRKVWV
Sbjct: 780  CETCVMGKQRRVKFSMGSHTTNGVLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKVWV 839

Query: 181  YLLKDKSDTFHNFNNWKRQVENLTGKKIKFLRTDNGLEFCNTEFDNMCKESGITRHKTVP 360
            Y LK K + F  F  WK  VE  TGK +K LRTDNGLEFCN +FD  C++ GI RH+TV 
Sbjct: 840  YFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVR 899

Query: 361  YTPQQNGVAERMNRTLLDKVRCMMLSSGVPKSFWGEAVMTACYLVNLTPSMALNGDTPHE 540
            +TPQQNGVAERMN+TL+ + RCM + +G+ K FW EAV TA YLVN +PS A++  TP E
Sbjct: 900  HTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQE 959

Query: 541  KWSGKLADYSVLKTFGCAAFSHQSEGKLEPRARKCVFLGYPEGVKGYRLWDRSQKGVKII 720
             WSGK ++YS LK FGC A++H S+GKLEPRA KC+FLGY  GVKGYRLW    +  K I
Sbjct: 960  VWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFI 1019

Query: 721  LSRDVTFNEAEM--------PCLGAGSETLSEKNQLEVELEKISTHVPITPSEVETQILQ 876
            +SRDVTF+E+ M           G     L    ++E E++    +     SE +  I Q
Sbjct: 1020 ISRDVTFDESAMFGQRKEFGDLAGTSKTDLGANQKVEFEVDAPMENGVDDTSEEQPVIDQ 1079

Query: 877  LEEEGGDVVIEEHSVEEDPLVDYQLXXXXXXXXXXXXXXFGYESELAFAYASYEELVDRE 1056
             + +          +                            + +AFA A  EE+   E
Sbjct: 1080 NDSQSIAAXRPRREIRR-------------PMRYVDCVSANITNPVAFALAVAEEIGREE 1126

Query: 1057 PNTFEEAMRSEQSEEWLKAMKEEMSSLAKNQTWELVPKPKNKSTVDCKWIFKVKEGTCTA 1236
            P +++EAM S+ S++WL +M +EM+SL KNQTWELVP P+    VDCKW+FK+K+G    
Sbjct: 1127 PRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISED 1186

Query: 1237 EP 1242
            EP
Sbjct: 1187 EP 1188


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  395 bits (1014), Expect = e-107
 Identities = 200/425 (47%), Positives = 263/425 (61%), Gaps = 11/425 (2%)
 Frame = +1

Query: 1    CDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSGGNRYFLSIIDDYSRKVWV 180
            C+HC+ GKH ++ F+T VH TK  L+YVH+DLWGPS  P+ GG RY L+IIDDYSRKVW 
Sbjct: 462  CEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWP 521

Query: 181  YLLKDKSDTFHNFNNWKRQVENLTGKKIKFLRTDNGLEFCNTEFDNMCKESGITRHKTVP 360
            Y LK K DTF  F NWK  +E  T +K+K L TDNG EFC+  F++ C++ GI RH T+P
Sbjct: 522  YFLKHKDDTFTAFKNWKVMIERQTERKVKLLCTDNGGEFCSHAFNDYCRQEGIVRHHTIP 581

Query: 361  YTPQQNGVAERMNRTLLDKVRCMMLSSGVPKSFWGEAVMTACYLVNLTPSMALNGDTPHE 540
            +TPQQNGVAERMNRT++ + RCM+  + + K FW EA  TACYL+N +PS+ LN  TP E
Sbjct: 582  HTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIE 641

Query: 541  KWSGKLADYSVLKTFGCAAFSHQSEGKLEPRARKCVFLGYPEGVKGYRLWDRSQKGVKII 720
             WSG  ADYS LK FGC A++H   GKLEPRA KC+FLGY  GVKGY+LW  + +  K  
Sbjct: 642  VWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW--NPETGKTF 699

Query: 721  LSRDVTFNEAEMPCLGAGSETLSEK--NQLEVELEKISTHVPITPSEVETQILQLEEEGG 894
            +SR V FNE+ M      SE + EK   ++ +++E +     +    V+ Q    ++   
Sbjct: 700  MSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVDEQ----DDHNN 755

Query: 895  DVVIEE--HSVEEDPLV-----DYQLXXXXXXXXXXXXXXFGYESELAFAYASYEELVD- 1050
            DV  ++    V++ P +     D  +                 E  L++   S  E V+ 
Sbjct: 756  DVADDDAHDDVQQTPPILQLEEDLSIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVEN 815

Query: 1051 -REPNTFEEAMRSEQSEEWLKAMKEEMSSLAKNQTWELVPKPKNKSTVDCKWIFKVKEGT 1227
              EP T++EA+R   SE W+ AM EEM SL KN TWE+VP PK K T+ CKWIFK KE  
Sbjct: 816  VHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEAL 875

Query: 1228 CTAEP 1242
              +EP
Sbjct: 876  SLSEP 880


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  393 bits (1010), Expect = e-106
 Identities = 197/415 (47%), Positives = 263/415 (63%), Gaps = 2/415 (0%)
 Frame = +1

Query: 1    CDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSGGNRYFLSIIDDYSRKVWV 180
            C+HCV GK H+  F   +H+TK  L+Y+HSD WGP    + GG R+F+SIIDDYSR  WV
Sbjct: 446  CEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWV 505

Query: 181  YLLKDKSDTFHNFNNWKRQVENLTGKKIKFLRTDNGLEFCNTEFDNMCKESGITRHKTVP 360
            Y++K KS+ F  F  WK  +EN TGKKIK LRTDNGLEFC +EFD  CK+ GI RH+TV 
Sbjct: 506  YMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVR 565

Query: 361  YTPQQNGVAERMNRTLLDKVRCMMLSSGVPKSFWGEAVMTACYLVNLTPSMALNGDTPHE 540
             TPQQNGVAERMN+TLL++ RCM+ ++G+ + FW EAV TACYL+N  P   +   TP E
Sbjct: 566  NTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPME 625

Query: 541  KWSGKLADYSVLKTFGCAAFSHQSEGKLEPRARKCVFLGYPEGVKGYRLWDRSQKGVKII 720
             WSGK ADYS LK FGC A+ H SEGKLEPRA+K VF+GY +GVKG+R+W  ++K  ++I
Sbjct: 626  MWSGKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEK--RVI 683

Query: 721  LSRDVTFNEAEMPCLGAGSETLSEKNQLEVELEKISTHVPITPSEVETQILQLEEEGGDV 900
            +SR+V F+E+ +        T SE   L+ ++E           + E+ + + EEE  + 
Sbjct: 684  MSRNVVFDESPLLRTIVKPTTTSETGSLDKQVE-------FQVIQNESDLKEPEEEDQEP 736

Query: 901  VIEEHSVEEDPLVDYQ--LXXXXXXXXXXXXXXFGYESELAFAYASYEELVDREPNTFEE 1074
              E    E  P   +Q                 +G+E  + +A    EE+   EP+T++E
Sbjct: 737  QTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKE 796

Query: 1075 AMRSEQSEEWLKAMKEEMSSLAKNQTWELVPKPKNKSTVDCKWIFKVKEGTCTAE 1239
            A+ S  SE+W  AM +EM SL KNQTW+LV +P  +  + CKW+FK KEG   AE
Sbjct: 797  AILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAE 851


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  388 bits (996), Expect = e-105
 Identities = 193/420 (45%), Positives = 262/420 (62%), Gaps = 6/420 (1%)
 Frame = +1

Query: 1    CDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSGGNRYFLSIIDDYSRKVWV 180
            C++C+ GK H+  F+ G H +K++L+Y H D WGP+  P+  G RYF+S+IDDYSRKVW+
Sbjct: 458  CENCIFGKSHRSKFNKGEHMSKQVLDYAHIDHWGPAQVPSLSGGRYFMSLIDDYSRKVWI 517

Query: 181  YLLKDKSDTFHNFNNWKRQVENLTGKKIKFLRTDNGLEFCNTEFDNMCKESGITRHKTVP 360
            Y+LK K      F  WK  VEN +  K+K LRTDNGLEFC+  F+  C++ GI RHKTV 
Sbjct: 518  YILKIKDQALEKFKVWKSLVENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVR 577

Query: 361  YTPQQNGVAERMNRTLLDKVRCMMLSSGVPKSFWGEAVMTACYLVNLTPSMALNGDTPHE 540
            +TPQQNG+AERMNRTL+DK RCM+++S +P+SFW EAV TA YLVN +PS A+   TP E
Sbjct: 578  FTPQQNGLAERMNRTLVDKTRCMLINSKLPRSFWAEAVNTASYLVNRSPSSAIGFKTPEE 637

Query: 541  KWSGKLADYSVLKTFGCAAFSHQSEGKLEPRARKCVFLGYPEGVKGYRLWDRSQKGVKII 720
             W+GK A+Y  L+ FGC A+ H ++GKLE RA K VF+GYP+GVKGY++W + Q   K I
Sbjct: 638  LWNGKPANYQNLRVFGCPAYLHINQGKLEARALKGVFVGYPDGVKGYKIWCKDQG--KCI 695

Query: 721  LSRDVTFNEAEMPCLGAGSETLSEKNQLEVE---LEKISTHVPITPSEVETQILQLEEEG 891
            +SRDV F+E+ +    A  +   + N    +    E    +V +   +   +    ++E 
Sbjct: 696  VSRDVVFHESVLLKESAEHDAGLQDNPAANKRSGSETSKVNVELLTDKSSEKEAASDDER 755

Query: 892  GDVVIEEHSVEEDPLVD---YQLXXXXXXXXXXXXXXFGYESELAFAYASYEELVDREPN 1062
                 EEH V E P  D   YQL              +GY   +A+A    +E+   EP 
Sbjct: 756  ATAESEEHEVSELPQADLQNYQLARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPA 815

Query: 1063 TFEEAMRSEQSEEWLKAMKEEMSSLAKNQTWELVPKPKNKSTVDCKWIFKVKEGTCTAEP 1242
             F EAM S   ++WL+AM++EM SL +NQTW L+P P NK  ++CKWIFK  EG    EP
Sbjct: 816  NFSEAMESVHCDKWLEAMQDEMESLQRNQTWTLIPNPGNKRLINCKWIFKRNEGIPDVEP 875


>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1156

 Score =  384 bits (987), Expect = e-104
 Identities = 204/425 (48%), Positives = 260/425 (61%), Gaps = 11/425 (2%)
 Frame = +1

Query: 1    CDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSGGNRYFLSIIDDYSRKVWV 180
            C+HCV GKH ++ F+T VH++K IL+YVH+DLWGPS  P+ GG  Y L+IIDDYSRKVW 
Sbjct: 401  CEHCVFGKHKRVKFNTSVHRSKGILDYVHADLWGPSRKPSLGGACYMLTIIDDYSRKVWP 460

Query: 181  YLLKDKSDTFHNFNNWKRQVENLTGKKIKFLRTDNGLEFCNTEFDNMCKESGITRHKTVP 360
            Y LK K DTF  F  WK  +E  T K++K LRTD+G EFC+  FD+ C++ GI RH T+P
Sbjct: 461  YFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDSGGEFCSDAFDDYCRKEGIVRHHTIP 520

Query: 361  YTPQQNGVAERMNRTLLDKVRCMMLSSGVPKSFWGEAVMTACYLVNLTPSMALNGDTPHE 540
            YTPQQNGVAERMNRT++   RCM+ ++ + K FW E   TACYL+N +PS+ LN  TP E
Sbjct: 521  YTPQQNGVAERMNRTIISNTRCMLSNARMNKRFWAEVANTACYLINRSPSIPLNKKTPIE 580

Query: 541  KWSGKLADYSVLKTFGCAAFSHQSEGKLEPRARKCVFLGYPEGVKGYRLWDRSQKGVKII 720
             WSG  ADYS L+ FGC A++H   GKLEPRA KC+FLGY  GVKGY+LW  + K  K  
Sbjct: 581  VWSGMPADYSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKGYKLW--NPKTNKTF 638

Query: 721  LSRDVTFNEAEM--------PCLGAGSETLSEKNQLEVELEKISTHVPITPSEVETQILQ 876
            +SR V FNE+ M          LG   E   E+  + V++E +         + ET+I+ 
Sbjct: 639  MSRSVVFNESVMFNDSLPTDVILGGSDE---EQQYVSVQVEHV--------DDQETEIV- 686

Query: 877  LEEEGGDV-VIEEHSVEEDPLVDYQLXXXXXXXXXXXXXXFGYESELAFAYASYEELVDR 1053
                G DV V  +HS       D  +              F  E ++ +   S  E V+ 
Sbjct: 687  ----GNDVNVTVQHSPPVLQPQDEPIAHRRTKRSCGAPIRFIEECDMVYYAFSCAEQVEN 742

Query: 1054 --EPNTFEEAMRSEQSEEWLKAMKEEMSSLAKNQTWELVPKPKNKSTVDCKWIFKVKEGT 1227
              EP T+ EA+ S   E+W+ AM+EEM SL KN TWELV  PK K  V CKWIFK KEG 
Sbjct: 743  TLEPATYTEAVVSGDREKWISAMQEEMQSLEKNGTWELVHLPKQKKPVHCKWIFKRKEGL 802

Query: 1228 CTAEP 1242
              +EP
Sbjct: 803  SPSEP 807


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  384 bits (986), Expect = e-104
 Identities = 193/421 (45%), Positives = 261/421 (61%), Gaps = 8/421 (1%)
 Frame = +1

Query: 1    CDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSGGNRYFLSIIDDYSRKVWV 180
            C+HC+ GKH ++ F+T  H T+ IL+YVHSDLWGP+   + GG RY ++I+DDYSRKVW 
Sbjct: 675  CEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWP 734

Query: 181  YLLKDKSDTFHNFNNWKRQVENLTGKKIKFLRTDNGLEFCNTEFDNMCKESGITRHKTVP 360
            Y LK K   F  F  WK  VE  T +K+K LRTDNG+EFC+  F + CK  GI RH TVP
Sbjct: 735  YFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVP 794

Query: 361  YTPQQNGVAERMNRTLLDKVRCMMLSSGVPKSFWGEAVMTACYLVNLTPSMALNGDTPHE 540
            +TPQQNGVAERMNRT++ K RC++ ++G+PK FW EAV TACYL+N +PS A++  TP E
Sbjct: 795  HTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIE 854

Query: 541  KWSGKLADYSVLKTFGCAAFSHQSEGKLEPRARKCVFLGYPEGVKGYRLWDRSQKGVKII 720
             WSG  A+YS L+ FGC A++H   GKLEPRA KC+FLGYP GVKGY+LW    K  K++
Sbjct: 855  VWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETK--KVV 912

Query: 721  LSRDVTFNEAEM----PCLGAGSETLSEKNQLEVELEKISTHVPITPSEVETQILQLEEE 888
            +SR+V F+E+ M    P      E+  EK  ++VE    S H P        Q   + E+
Sbjct: 913  ISRNVVFHESVMLHDKPSTNVPVES-QEKASVQVEHLISSGHAPEKEDVAINQDEPVIED 971

Query: 889  GGDVVIEE---HSVEEDPLVDYQLXXXXXXXXXXXXXXFGYESELAFAYASYEELV-DRE 1056
                ++++    S+ +D                         + +A+A +  EE+  + E
Sbjct: 972  SNSSIVQQSPKRSIAKD---------RPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAE 1022

Query: 1057 PNTFEEAMRSEQSEEWLKAMKEEMSSLAKNQTWELVPKPKNKSTVDCKWIFKVKEGTCTA 1236
            P+T+ EA+ S+    W+ AM +EM SL KN TWELV  PK K  + CKWIFK KEG  ++
Sbjct: 1023 PSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSS 1082

Query: 1237 E 1239
            +
Sbjct: 1083 D 1083


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  380 bits (975), Expect = e-102
 Identities = 203/427 (47%), Positives = 260/427 (60%), Gaps = 13/427 (3%)
 Frame = +1

Query: 1    CDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSGGNRYFLSIIDDYSRKVWV 180
            C+ CV GKH ++ F+T VH+TK IL+YVH+DLWGPS  P+ GG RY L+IIDDYSRKVW 
Sbjct: 461  CERCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWP 520

Query: 181  YLLKDKSDTFHNFNNWKRQVENLTGKKIKFLRTDNGLEFCNTEFDNMCKESGITRHKTVP 360
            Y LK K DTF  F  WK  +E  T K++K LRTDN  EFC+  FD+ C++ GI RH T+P
Sbjct: 521  YFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVRHHTIP 580

Query: 361  YTPQQNGVAERMNRTLLDKVRCMMLSSGVPKSFWGEAVMTACYLVNLTPSMALNGDTPHE 540
            YTPQQNGVAERMNRT++ K RCM+ ++ + K FW EA  TACYL+N +PS+ LN  TP E
Sbjct: 581  YTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIE 640

Query: 541  KWSGKLADYSVLKTFGCAAFSHQSEGKLEPRARKCVFLGYPEGVKGYRLWDRSQKGVKII 720
             WSG  ADYS L+ FGC A++H    KLEPRA KC+FLGY  GVKGY+LW+      K  
Sbjct: 641  IWSGMPADYSQLRVFGCTAYAHVDNEKLEPRAIKCLFLGYGLGVKGYKLWNPETN--KTF 698

Query: 721  LSRDVTFNEAEM-------PCLGAGSETLSEKNQLEVELEKISTHVPITPSEVETQILQL 879
            +SR V FNE+ M         +  GS+   E+  + V++E +         + ET+I+  
Sbjct: 699  MSRSVVFNESVMFNDSLPTDVIPGGSD--EEQQYVSVQVEHV--------DDQETEIV-- 746

Query: 880  EEEGGDVVIEEHSVEEDPLV----DYQLXXXXXXXXXXXXXXFGYESELAFAYASYEELV 1047
               G DV     +V+  P V    D  +                 E ++ +   S  E V
Sbjct: 747  ---GNDV---NDTVQHSPPVLQPQDEPIAHRRTKRSCGAPVRLIEECDMVYYAFSCAEQV 800

Query: 1048 DR--EPNTFEEAMRSEQSEEWLKAMKEEMSSLAKNQTWELVPKPKNKSTVDCKWIFKVKE 1221
            +   EP T+ EA+ S   E+W+ AM+EEM SL KN TWELV  PK K  V CKWIFK KE
Sbjct: 801  ENTLEPATYTEAVVSGDREKWISAMQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKE 860

Query: 1222 GTCTAEP 1242
            G   +EP
Sbjct: 861  GLSPSEP 867


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  380 bits (975), Expect = e-102
 Identities = 203/427 (47%), Positives = 261/427 (61%), Gaps = 13/427 (3%)
 Frame = +1

Query: 1    CDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSGGNRYFLSIIDDYSRKVWV 180
            C+HCV GKH ++ F+T VH+TK IL+YVH+DLWGPS  P+ GG RY L+IIDDYSRK W 
Sbjct: 461  CEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKEWP 520

Query: 181  YLLKDKSDTFHNFNNWKRQVENLTGKKIKFLRTDNGLEFCNTEFDNMCKESGITRHKTVP 360
            Y LK K DTF  F   K  +E  T K++K L TDNG EFC+  FD+ C++ GI RH T+P
Sbjct: 521  YFLKHKDDTFAAFKERKVMIERQTEKEVKVLCTDNGGEFCSDAFDDYCRKEGIVRHHTIP 580

Query: 361  YTPQQNGVAERMNRTLLDKVRCMMLSSGVPKSFWGEAVMTACYLVNLTPSMALNGDTPHE 540
            YTPQQNGVAERMNRT++ K RCM+ ++ + K FW EA  TACYL+N +PS+ LN  TP E
Sbjct: 581  YTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIE 640

Query: 541  KWSGKLADYSVLKTFGCAAFSHQSEGKLEPRARKCVFLGYPEGVKGYRLWDRSQKGVKII 720
             WSG  ADYS L+ FGC A++H   GKLEPRA KC+FLGY  GVKGY+LW+      K  
Sbjct: 641  IWSGMPADYSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKGYKLWNPETN--KTF 698

Query: 721  LSRDVTFNEAEM-------PCLGAGSETLSEKNQLEVELEKISTHVPITPSEVETQILQL 879
            +SR+V FNE  M         +  GS+   E+  + V++E +         + ET+I+  
Sbjct: 699  MSRNVIFNEFVMFNDSLPTDVIPGGSD--EEQQYVSVQVEHV--------DDQETEIV-- 746

Query: 880  EEEGGDVVIEEHSVEEDPLV----DYQLXXXXXXXXXXXXXXFGYESELAFAYASYEELV 1047
               G DV     +V+  P V    D  +                 E ++ +   SY E V
Sbjct: 747  ---GNDV---NDTVQHSPSVLQPQDEPIAHRRTKRSCGAPVRLIEECDMVYYAFSYAEQV 800

Query: 1048 DR--EPNTFEEAMRSEQSEEWLKAMKEEMSSLAKNQTWELVPKPKNKSTVDCKWIFKVKE 1221
            +   EP T+ EA+ S   E+W+ A++EEM SL KN TWELV  PK K  V CKWIFK KE
Sbjct: 801  ENTLEPATYTEAVVSGDREKWISAIQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKE 860

Query: 1222 GTCTAEP 1242
            G   +EP
Sbjct: 861  GLSPSEP 867


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
            gi|20087076|gb|AAM10749.1|AC112514_2 Putative
            retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score =  378 bits (971), Expect = e-102
 Identities = 193/420 (45%), Positives = 260/420 (61%), Gaps = 12/420 (2%)
 Frame = +1

Query: 1    CDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSGGNRYFLSIIDDYSRKVWV 180
            C+HC+ GKH ++ F+T  H T+ IL+YVHSDLWGP+   + GG RY ++I+DDYSRKVW 
Sbjct: 429  CEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWP 488

Query: 181  YLLKDKSDTFHNFNNWKRQVENLTGKKIKFLRTDNGLEFCNTEFDNMCKESGITRHKTVP 360
            Y LK K   F  F  WK  VE  T +K+K LRTDNG++FC+  F + CK  GI RH TVP
Sbjct: 489  YFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMDFCSKIFKSYCKSEGIVRHYTVP 548

Query: 361  YTPQQNGVAERMNRTLLDKVRCMMLSSGVPKSFWGEAVMTACYLVNLTPSMALNGDTPHE 540
            +TPQQNGVAERMNRT++ K RCM+ ++G+PK FW EAV TACYL+N +PS A++  TP +
Sbjct: 549  HTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIK 608

Query: 541  KWSGKLADYSVLKTFGCAAFSHQSEGKLEPRARKCVFLGYPEGVKGYRLWDRSQKGVKII 720
             WSG  A+YS L+ FGC A++H    KLEPRA KC+FLGYP GVKGY+LW    K  K++
Sbjct: 609  VWSGSPANYSDLRVFGCIAYAHVDNSKLEPRAIKCIFLGYPSGVKGYKLWCPETK--KVV 666

Query: 721  LSRDVTFNEAEM----PCLGAGSETLSEKNQLEVELEKISTHVPITPSEVETQILQLE-- 882
            +SR+V F+E+ M    P      E+  EK  ++VE    S H P    E E   + L+  
Sbjct: 667  ISRNVVFHESVMLHDKPSTNVPVES-QEKASVQVEHLISSGHAP----EKENVAINLDAP 721

Query: 883  --EEGGDVVIEE---HSVEEDPLVDYQLXXXXXXXXXXXXXXFGYESELAFAYASYEELV 1047
              E+    ++++   HS+ +D                         + +A+A +  EE+ 
Sbjct: 722  VIEDSDSSIVQQSPKHSIAKDK---------PKRNIKPPRRYIEEANIVAYALSVAEEIE 772

Query: 1048 DR-EPNTFEEAMRSEQSEEWLKAMKEEMSSLAKNQTWELVPKPKNKSTVDCKWIFKVKEG 1224
               EP+T+ +A+ S+    W+ AM +EM SL KN TWELV  PK K  + CKWIFK KEG
Sbjct: 773  GNVEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEG 832


>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
          Length = 1009

 Score =  376 bits (966), Expect = e-101
 Identities = 190/416 (45%), Positives = 254/416 (61%), Gaps = 8/416 (1%)
 Frame = +1

Query: 1    CDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSGGNRYFLSIIDDYSRKVWV 180
            C+HC+ GKHH++ F+T  H T+ IL+YVHSDLWGP+   + GG RY ++IIDDYSRKVW 
Sbjct: 289  CEHCIFGKHHRVKFNTSTHTTEGILDYVHSDLWGPTCKTSFGGARYMMTIIDDYSRKVWP 348

Query: 181  YLLKDKSDTFHNFNNWKRQVENLTGKKIKFLRTDNGLEFCNTEFDNMCKESGITRHKTVP 360
            Y LK K   F  F  WK  VE  T +K+K LR DNG+EFC+  F + CK  GI RH TVP
Sbjct: 349  YFLKHKYQAFDVFKEWKTMVERQTERKVKILRPDNGMEFCSKIFKSYCKSEGIVRHYTVP 408

Query: 361  YTPQQNGVAERMNRTLLDKVRCMMLSSGVPKSFWGEAVMTACYLVNLTPSMALNGDTPHE 540
            +TPQQNGVAERMNRT++ K RCM+ ++G+PK FW EAV TACYL+N +PS A++  TP E
Sbjct: 409  HTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIE 468

Query: 541  KWSGKLADYSVLKTFGCAAFSHQSEGKLEPRARKCVFLGYPEGVKGYRLWDRSQKGVKII 720
             WS   A YS L+ F C A++H   GKLEPRA KC+FLGYP GVKGY+LW    K  K++
Sbjct: 469  VWSSSPAKYSDLRVFSCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETK--KVV 526

Query: 721  LSRDVTFNEAEM----PCLGAGSETLSEKNQLEVELEKISTHVPITPSEVETQILQLEEE 888
            ++R+V F+E+ M    P      E+  EK  ++VE    S H P        Q   + E+
Sbjct: 527  INRNVVFHESVMLHDKPSTNVPVES-QEKASVQVEHLISSGHAPEKEDVAINQDAPVIED 585

Query: 889  GGDVVIEE---HSVEEDPLVDYQLXXXXXXXXXXXXXXFGYESELAFAYASYEELV-DRE 1056
                ++++    S+ +D                         + + +A +  EE+  + E
Sbjct: 586  SDSSIVQQSPKRSIAKD---------RPKRNTKPPRKYIEEANIVTYALSVAEEIEGNTE 636

Query: 1057 PNTFEEAMRSEQSEEWLKAMKEEMSSLAKNQTWELVPKPKNKSTVDCKWIFKVKEG 1224
            P+T+ +A+ S+    W+ AM +EM SL KN TWELV  PK K  + CKWIFK KEG
Sbjct: 637  PSTYSDAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEG 692


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  373 bits (957), Expect = e-100
 Identities = 188/414 (45%), Positives = 252/414 (60%), Gaps = 6/414 (1%)
 Frame = +1

Query: 1    CDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSGGNRYFLSIIDDYSRKVWV 180
            C+HC+ GKH ++ F+T  H T+ IL+YVHSDLWGP+   + GG RY ++I+DDYSRKVW 
Sbjct: 503  CEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWP 562

Query: 181  YLLKDKSDTFHNFNNWKRQVENLTGKKIKFLRTDNGLEFCNTEFDNMCKESGITRHKTVP 360
            Y LK K   F  F  WK  VE  T KK+K LRTDNG+EFC+  F + CK  GI  H TVP
Sbjct: 563  YFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVP 622

Query: 361  YTPQQNGVAERMNRTLLDKVRCMMLSSGVPKSFWGEAVMTACYLVNLTPSMALNGDTPHE 540
            +TPQQNGVAERMN  ++ K RCM+ ++ +PK FW EAV T CYL+N +PS A +  TP E
Sbjct: 623  HTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPIE 682

Query: 541  KWSGKLADYSVLKTFGCAAFSHQSEGKLEPRARKCVFLGYPEGVKGYRLWDRSQKGVKII 720
             WSG  A+YS L+ FGC A++H   GKLEPRA KC+FLGYP GVKGY+LW    K  K++
Sbjct: 683  VWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETK--KVV 740

Query: 721  LSRDVTFNEA----EMPCLGAGSETLSEKNQLEVELEKISTHVPITPSEVETQILQLEEE 888
            +SR+V F+E+    + P      E+  EK  ++VE    S H P   +    Q   + E+
Sbjct: 741  ISRNVVFHESVILHDKPSTNVPVES-QEKASVQVEHLISSGHAPEKENVAINQDAPVIED 799

Query: 889  GGDVVIEEHSVEEDPLVDYQLXXXXXXXXXXXXXXFGYESEL-AFAYASYEELV-DREPN 1062
                ++++ S          +              +  E+ + A+A +  EE+  + EP+
Sbjct: 800  SDSSIVQQSSKR-------SIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPS 852

Query: 1063 TFEEAMRSEQSEEWLKAMKEEMSSLAKNQTWELVPKPKNKSTVDCKWIFKVKEG 1224
            T+ EA+ S+    W+ AM +EM SL KN TWE V  PK K  + CKWIFK KEG
Sbjct: 853  TYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEG 906


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  373 bits (957), Expect = e-100
 Identities = 188/414 (45%), Positives = 252/414 (60%), Gaps = 6/414 (1%)
 Frame = +1

Query: 1    CDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSGGNRYFLSIIDDYSRKVWV 180
            C+HC+ GKH ++ F+T  H T+ IL+YVHSDLWGP+   + GG RY ++I+DDYSRKVW 
Sbjct: 503  CEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWP 562

Query: 181  YLLKDKSDTFHNFNNWKRQVENLTGKKIKFLRTDNGLEFCNTEFDNMCKESGITRHKTVP 360
            Y LK K   F  F  WK  VE  T KK+K LRTDNG+EFC+  F + CK  GI  H TVP
Sbjct: 563  YFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVP 622

Query: 361  YTPQQNGVAERMNRTLLDKVRCMMLSSGVPKSFWGEAVMTACYLVNLTPSMALNGDTPHE 540
            +TPQQNGVAERMN  ++ K RCM+ ++ +PK FW EAV T CYL+N +PS A +  TP E
Sbjct: 623  HTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPIE 682

Query: 541  KWSGKLADYSVLKTFGCAAFSHQSEGKLEPRARKCVFLGYPEGVKGYRLWDRSQKGVKII 720
             WSG  A+YS L+ FGC A++H   GKLEPRA KC+FLGYP GVKGY+LW    K  K++
Sbjct: 683  VWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETK--KVV 740

Query: 721  LSRDVTFNEA----EMPCLGAGSETLSEKNQLEVELEKISTHVPITPSEVETQILQLEEE 888
            +SR+V F+E+    + P      E+  EK  ++VE    S H P   +    Q   + E+
Sbjct: 741  ISRNVVFHESVILHDKPSTNVPVES-QEKASVQVEHLISSGHAPEKENVAINQDAPVIED 799

Query: 889  GGDVVIEEHSVEEDPLVDYQLXXXXXXXXXXXXXXFGYESEL-AFAYASYEELV-DREPN 1062
                ++++ S          +              +  E+ + A+A +  EE+  + EP+
Sbjct: 800  SDSSIVQQSSKR-------SIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPS 852

Query: 1063 TFEEAMRSEQSEEWLKAMKEEMSSLAKNQTWELVPKPKNKSTVDCKWIFKVKEG 1224
            T+ EA+ S+    W+ AM +EM SL KN TWE V  PK K  + CKWIFK KEG
Sbjct: 853  TYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEG 906


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  369 bits (946), Expect = 3e-99
 Identities = 187/417 (44%), Positives = 254/417 (60%), Gaps = 9/417 (2%)
 Frame = +1

Query: 1    CDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSGGNRYFLSIIDDYSRKVWV 180
            C+HC+ GKH ++ F+T  H T+ IL+YVHSDLWGP+   + GG RY ++I+DDYSRKVW 
Sbjct: 440  CEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPAHKTSFGGARYMMTIVDDYSRKVWP 499

Query: 181  YLLKDKSDTFHNFNNWKRQVENLTGKKIKFLRTDNGLEFCNTEFDNMCKESGITRHKTVP 360
            Y LK K   F  F  WK  VE  T +K+K LRTDNG+EFC+  F + CK  GI  H T P
Sbjct: 500  YFLKHKYQAFDGFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVCHYTAP 559

Query: 361  YTPQQNGVAERMNRTLLDKVRCMMLSSGVPKSFWGEAVMTACYLVNLTPSMALNGDTPHE 540
            +TPQQN VAERMNRT++ K RCM+ ++G+PK FW EAV TACYL+N +P  A++  TP E
Sbjct: 560  HTPQQNDVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIE 619

Query: 541  KWSGKLADYSVLKTFGCAAFSHQSEGKLEPRARKCVFLGYPEGVKGYRLWDRSQKGVKII 720
             WSG   +YS L+ FGC A++H   GKLEPRA KC+FLGY  GVKGY+LW    K  K++
Sbjct: 620  VWSGSPTNYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYASGVKGYKLWCPETK--KVV 677

Query: 721  LSRDVTFNEA----EMPCLGAGSETLSEKNQLEVELEKISTHVPITPSEVETQILQLEEE 888
            +SR+V F+E+    + P      E+  EK  ++VE    S H P        Q   + E+
Sbjct: 678  ISRNVVFHESVILHDKPSTNVPVES-QEKASVQVEHLISSGHAPEKEDVAINQDAPVIED 736

Query: 889  GGDVVIEE---HSVEEDPLVDYQLXXXXXXXXXXXXXXFGYESEL-AFAYASYEELV-DR 1053
                ++ +    S+ +D                     +  E+++ A+A +  E++  + 
Sbjct: 737  SDSSIVHQSPKRSIAKD----------KPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNA 786

Query: 1054 EPNTFEEAMRSEQSEEWLKAMKEEMSSLAKNQTWELVPKPKNKSTVDCKWIFKVKEG 1224
            EP+T+ EA+ S+    W+ AM +EM SL KN TWELV  PK K  + CKWIFK KEG
Sbjct: 787  EPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEG 843


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  368 bits (945), Expect = 5e-99
 Identities = 187/416 (44%), Positives = 253/416 (60%), Gaps = 8/416 (1%)
 Frame = +1

Query: 1    CDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSGGNRYFLSIIDDYSRKVWV 180
            C+HC+ GKH ++ F+T  H T+ IL+YVHSDLWGP+   + GG RY ++I+DDYSRKVW 
Sbjct: 377  CEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWP 436

Query: 181  YLLKDKSDTFHNFNNWKRQVENLTGKKIKFLRTDNGLEFCNTEFDNMCKESGITRHKTVP 360
            Y LK K   F  F  WK  VE  T +K+K LRTDNG+E C+  F + CK  GI RH TVP
Sbjct: 437  YFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHYTVP 496

Query: 361  YTPQQNGVAERMNRTLLDKVRCMMLSSGVPKSFWGEAVMTACYLVNLTPSMALNGDTPHE 540
            +TPQQNGVAERMNRT++ K RCM+ ++ +PK FW EAV TACYL+N +PS A++  TP E
Sbjct: 497  HTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIE 556

Query: 541  KWSGKLADYSVLKTFGCAAFSHQSEGKLEPRARKCVFLGYPEGVKGYRLWDRSQKGVKII 720
             WSG  A+YS L+ FGC A++H   GKLEPR  KC+FLGY  GVKGY+LW    K  K++
Sbjct: 557  VWSGSPANYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETK--KVV 614

Query: 721  LSRDVTFNEAEM----PCLGAGSETLSEKNQLEVELEKISTHVPITPSEVETQILQLEEE 888
            +SR+V F+E+ M    P      E+  EK  ++VE    S H P        Q   + E+
Sbjct: 615  ISRNVVFHESIMLHDKPSTNVPVES-QEKVSVQVEHLISSGHAPEKEDVAINQDAPVIED 673

Query: 889  GGDVVIEE---HSVEEDPLVDYQLXXXXXXXXXXXXXXFGYESELAFAYASYEELV-DRE 1056
                ++++    S+ +D                         + +A+A +  EE+  + E
Sbjct: 674  SDSSIVQQSPKRSIAKD---------RPKRNTKPPRRYIEEANIVAYALSVAEEIEGNAE 724

Query: 1057 PNTFEEAMRSEQSEEWLKAMKEEMSSLAKNQTWELVPKPKNKSTVDCKWIFKVKEG 1224
            P+T+ +A+ S+    W+ AM +EM SL KN +WEL   PK K  + CKWIFK KEG
Sbjct: 725  PSTYSDAIVSDDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEG 780


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  368 bits (944), Expect = 6e-99
 Identities = 190/434 (43%), Positives = 254/434 (58%), Gaps = 26/434 (5%)
 Frame = +1

Query: 1    CDHCVLGKHHKLSFSTGVHKTKRILEYVHSDLWGPSSNPTSGGN-RYFLSIIDDYSRKVW 177
            C+ CV GK H++SF+   H TK  L YVHSDLWG   NP S GN +YF+S +DDYSRKVW
Sbjct: 449  CEDCVYGKQHRVSFAPAQHVTKEKLAYVHSDLWGSPHNPASLGNSQYFISFVDDYSRKVW 508

Query: 178  VYLLKDKSDTFHNFNNWKRQVENLTGKKIKFLRTDNGLEFCNTEFDNMCKESGITRHKTV 357
            +Y L+ K + F  F  WK+ VEN + +K+K LRTDNGLE+CN  F+  CKE GI RHKT 
Sbjct: 509  IYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEEGIVRHKTC 568

Query: 358  PYTPQQNGVAERMNRTLLDKVRCMMLSSGVPKSFWGEAVMTACYLVNLTPSMALNGDTPH 537
             YTPQQNG+AER+NRT++DKVR M+  SG+ K FW EA  TA YL+N +PS A+N D P 
Sbjct: 569  AYTPQQNGIAERLNRTIMDKVRSMLSRSGMEKKFWAEAASTAVYLINRSPSTAINFDLPE 628

Query: 538  EKWSGKLADYSVLKTFGCAAFSHQSEGKLEPRARKCVFLGYPEGVKGYRLWDRSQKGVKI 717
            EKW+G L D S L+ FGC A+ H  +GKL PR++K +F  YPEGVKGY++W    K  K 
Sbjct: 629  EKWTGALPDLSSLRKFGCLAYIHADQGKLNPRSKKGIFTSYPEGVKGYKVWVLEDK--KC 686

Query: 718  ILSRDVTFNEAEM--PCLGAGSETLSEKNQLEVEL-----------------------EK 822
            ++SR+V F E  M     G    T+SE +  ++ +                       E 
Sbjct: 687  VISRNVIFREQVMFKDLKGDSQNTISESDLEDLRVNPDMNDQEFTDQGGATQDNSNPSEA 746

Query: 823  ISTHVPITPSEVETQILQLEEEGGDVVIEEHSVEEDPLVDYQLXXXXXXXXXXXXXXFGY 1002
             ++H P+  S   +Q  + EEE  D V        + L  YQL              +  
Sbjct: 747  TTSHNPVLNSPTHSQDEESEEEDSDAV--------EDLSTYQLVRDRVRRTIKANPKYNE 798

Query: 1003 ESELAFAYASYEELVDREPNTFEEAMRSEQSEEWLKAMKEEMSSLAKNQTWELVPKPKNK 1182
             + + FAY S E+    EP +++EA+     E+W  AMKEEM S++KN TW+LV KP+  
Sbjct: 799  SNMVGFAYYS-EDDGKPEPKSYQEALLDPDWEKWNAAMKEEMVSMSKNHTWDLVTKPEKV 857

Query: 1183 STVDCKWIFKVKEG 1224
              + C+W+F  K G
Sbjct: 858  KLIGCRWVFTRKAG 871