BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia21_contig00013945
         (2232 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011094631.1| PREDICTED: RNA polymerase sigma factor sigF,...   707   0.0  
ref|XP_012840943.1| PREDICTED: RNA polymerase sigma factor sigF,...   655   0.0  
ref|XP_012840944.1| PREDICTED: RNA polymerase sigma factor sigF,...   651   0.0  
ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF,...   626   e-176
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              626   e-176
ref|XP_011094632.1| PREDICTED: RNA polymerase sigma factor sigF,...   622   e-175
ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF,...   614   e-172
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   613   e-172
ref|XP_009794385.1| PREDICTED: RNA polymerase sigma factor sigF,...   605   e-170
ref|XP_009376812.1| PREDICTED: RNA polymerase sigma factor sigF,...   603   e-169
ref|XP_008359645.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   600   e-168
emb|CDP06761.1| unnamed protein product [Coffea canephora]            598   e-168
ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF,...   593   e-166
ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF,...   590   e-165
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   589   e-165
ref|XP_011018731.1| PREDICTED: RNA polymerase sigma factor sigF,...   589   e-165
ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF,...   589   e-165
gb|KDO48072.1| hypothetical protein CISIN_1g008352mg [Citrus sin...   588   e-165
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   588   e-165
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   585   e-164

>ref|XP_011094631.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Sesamum indicum]
          Length = 561

 Score =  707 bits (1824), Expect = 0.0
 Identities = 380/568 (66%), Positives = 435/568 (76%), Gaps = 5/568 (0%)
 Frame = -3

Query: 1984 MEAGRSLISSPSQFPPRTHIRNCVFSSSSSVLMLHEQVAPAVTSLSTSSLGRHLPSSILI 1805
            MEAGRSL+SSP QFPPRTH+RNC   SSSSVL+LH+QV PA+TSLST+ L RH P+S+L 
Sbjct: 1    MEAGRSLVSSPPQFPPRTHLRNC---SSSSVLLLHDQVTPALTSLSTT-LARHSPTSVLT 56

Query: 1804 QEHYDKSQPLLQQKEDITFQ--STLDRR---LTGAPSGNEANNILDSNQYVNDFQLQLQH 1640
            Q+ +++S+ +L  KED  FQ   TL  R   +  A S N+ N  +D +QYVN+FQLQL  
Sbjct: 57   QDQHNESRSMLCSKEDSVFQLKQTLGMRQAVMAPASSSNDGNGNVDPDQYVNEFQLQLLR 116

Query: 1639 CSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXX 1460
               LWYL PSLQTKE Q   +TM+SI  K EK + VE   VV                  
Sbjct: 117  RPELWYLWPSLQTKE-QLFSMTMESISNKNEKFIDVEADRVVALAREAFSACKEAAAIVK 175

Query: 1459 STKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPGRS 1280
              +L G  LDDS S R L   P Q  RTV              +PK  IEVQE NH  + 
Sbjct: 176  DAELFGARLDDSSSIRSLTGVPAQ--RTVRSTRLVERQMKRRRVPKPKIEVQETNHRRKP 233

Query: 1279 EVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKSRLQTQFSR 1100
            E QRK  +GFDPNDPLRLFL  PETR+LLT+K+ESELIVKIQELMRL+E+KSRL+ QFSR
Sbjct: 234  ESQRKSDEGFDPNDPLRLFLRGPETRQLLTSKEESELIVKIQELMRLQEMKSRLKVQFSR 293

Query: 1099 EPTLSEWAEAVGVSCQTMQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQE 920
            EPTL EWA A G+SCQ +QS +HCG SSR+KLI ANFRMVVHIAKQYQGRGLSLQDLLQE
Sbjct: 294  EPTLVEWAAAAGISCQALQSQIHCGDSSRQKLICANFRMVVHIAKQYQGRGLSLQDLLQE 353

Query: 919  GSTGLMRSVEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAK 740
            GS GLMRSVEKFKPQ GCRFATYAYWWIRQ+IRKA+FQHSRTIRLPENVY LLS+V EAK
Sbjct: 354  GSMGLMRSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSRVYEAK 413

Query: 739  KVCIQKGNHRPMKEEIAATAGITVERLDRLLFTARMPLSMQQPVWMDQNTTFQEITADPT 560
            K+CIQ+GNH P KE+IAA AG++VE L+RLL+TARMPLS+Q+PVW DQ+TTFQEITAD T
Sbjct: 414  KLCIQQGNHLPTKEDIAACAGMSVEGLERLLYTARMPLSLQKPVWTDQDTTFQEITADTT 473

Query: 559  VEVPDVSVSKQLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERV 380
            +EVPDV V+KQLMR+HIRNLLSVLSP+ERKIIRLRFGIE   QKSLSEIG  FGLSKERV
Sbjct: 474  IEVPDVGVAKQLMRQHIRNLLSVLSPRERKIIRLRFGIEHGEQKSLSEIGAGFGLSKERV 533

Query: 379  RQLESRALYKLKQSLDSHGLGAYSDMII 296
            RQLESRALYKLKQ L SHGL AY++MII
Sbjct: 534  RQLESRALYKLKQCLGSHGLAAYANMII 561


>ref|XP_012840943.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Erythranthe guttatus] gi|604329105|gb|EYU34473.1|
            hypothetical protein MIMGU_mgv1a003862mg [Erythranthe
            guttata]
          Length = 559

 Score =  655 bits (1691), Expect = 0.0
 Identities = 347/567 (61%), Positives = 417/567 (73%), Gaps = 4/567 (0%)
 Frame = -3

Query: 1984 MEAGRSLISSPSQFPPRTHIRNCVFSSSSSVLMLHEQVAPAVTSLSTSSLGRHLPSSILI 1805
            ME  RSL+SSP QFP RTH+RNC  SS SSVL+LHEQV PA+TSLST SL RH  +S+LI
Sbjct: 1    METVRSLVSSPPQFPLRTHVRNCS-SSCSSVLLLHEQVTPALTSLSTPSLARHTTTSVLI 59

Query: 1804 QEHYDKSQPLLQQKEDITFQSTLDRR----LTGAPSGNEANNILDSNQYVNDFQLQLQHC 1637
            Q+  ++S+PLL  K+D TFQ T DRR       + S NE N+ +D +QY ND QLQL   
Sbjct: 60   QDQRNESRPLLSLKDDNTFQQTFDRRQMVTTPASSSSNEGNDKIDPDQYDNDLQLQLLRR 119

Query: 1636 SALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXXS 1457
              LWYL  SLQ KE      T  S+    E   G E ++V+                   
Sbjct: 120  PELWYLWSSLQKKEHPFPTTTPNSLPSTAENVTGAEANHVLALAREAFSACKEAASIAED 179

Query: 1456 TKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPGRSE 1277
             +L     D+S S R LV +PVQ    +               PK  +E QE NH  + E
Sbjct: 180  ARLY----DNSSSTRSLVGSPVQ---RIVRSKRRLERQAKRRAPKPQLEDQEMNHRRKLE 232

Query: 1276 VQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKSRLQTQFSRE 1097
              +K  +G+DPNDPLRLFL  PET +LL+AK+E++LI KIQELM+L+EV+SRLQTQFSRE
Sbjct: 233  PHKKSSEGYDPNDPLRLFLWGPETTQLLSAKEEADLIAKIQELMKLQEVRSRLQTQFSRE 292

Query: 1096 PTLSEWAEAVGVSCQTMQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEG 917
            PTL EWA AVG+S Q +Q  ++CG  SREKLIYANFR+VV+IAKQYQGRGL+LQDLLQ G
Sbjct: 293  PTLVEWAAAVGISTQALQFQVNCGNFSREKLIYANFRLVVYIAKQYQGRGLNLQDLLQLG 352

Query: 916  STGLMRSVEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKK 737
            S GLM+SVEKFKP VGCRFATYAYWWIRQ+IRK++FQHSRTIRLPENVY LLSKV EAKK
Sbjct: 353  SMGLMKSVEKFKPLVGCRFATYAYWWIRQSIRKSLFQHSRTIRLPENVYTLLSKVYEAKK 412

Query: 736  VCIQKGNHRPMKEEIAATAGITVERLDRLLFTARMPLSMQQPVWMDQNTTFQEITADPTV 557
             CI++GNH+P KE+IAA AG++VE+LDRLL+T+R+PLSMQ+PVWMDQ+TTFQEITAD  V
Sbjct: 413  TCIKQGNHQPTKEDIAAAAGLSVEKLDRLLYTSRVPLSMQKPVWMDQDTTFQEITADTAV 472

Query: 556  EVPDVSVSKQLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVR 377
            E PDV  SKQ+MR+H RNLLSVL+P+ERKIIRLRFGIED  QKSLS+IG  FGLSKER+R
Sbjct: 473  EAPDVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEDGEQKSLSDIGAGFGLSKERIR 532

Query: 376  QLESRALYKLKQSLDSHGLGAYSDMII 296
            Q+ESRALYKLKQ L SHGL AY++M++
Sbjct: 533  QIESRALYKLKQCLSSHGLSAYAEMLV 559


>ref|XP_012840944.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Erythranthe guttatus]
          Length = 558

 Score =  651 bits (1680), Expect = 0.0
 Identities = 345/567 (60%), Positives = 415/567 (73%), Gaps = 4/567 (0%)
 Frame = -3

Query: 1984 MEAGRSLISSPSQFPPRTHIRNCVFSSSSSVLMLHEQVAPAVTSLSTSSLGRHLPSSILI 1805
            ME  RSL+SSP QFP RTH+RNC  SS SSVL+LHEQV PA+TSLST SL RH  +S+LI
Sbjct: 1    METVRSLVSSPPQFPLRTHVRNCS-SSCSSVLLLHEQVTPALTSLSTPSLARHTTTSVLI 59

Query: 1804 QEHYDKSQPLLQQKEDITFQSTLDRR----LTGAPSGNEANNILDSNQYVNDFQLQLQHC 1637
            Q+  ++S+PLL  K+D TFQ T DRR       + S NE N+ +D +QY ND QLQL   
Sbjct: 60   QDQRNESRPLLSLKDDNTFQQTFDRRQMVTTPASSSSNEGNDKIDPDQYDNDLQLQLLRR 119

Query: 1636 SALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXXS 1457
              LWYL  SLQ KE      T  S+    E   G E ++V+                   
Sbjct: 120  PELWYLWSSLQKKEHPFPTTTPNSLPSTAENVTGAEANHVLALAREAFSACKEAASIAED 179

Query: 1456 TKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPGRSE 1277
             +L      D+ S   LV +PVQ    +               PK  +E QE NH  + E
Sbjct: 180  ARLY-----DNSSSTSLVGSPVQ---RIVRSKRRLERQAKRRAPKPQLEDQEMNHRRKLE 231

Query: 1276 VQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKSRLQTQFSRE 1097
              +K  +G+DPNDPLRLFL  PET +LL+AK+E++LI KIQELM+L+EV+SRLQTQFSRE
Sbjct: 232  PHKKSSEGYDPNDPLRLFLWGPETTQLLSAKEEADLIAKIQELMKLQEVRSRLQTQFSRE 291

Query: 1096 PTLSEWAEAVGVSCQTMQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEG 917
            PTL EWA AVG+S Q +Q  ++CG  SREKLIYANFR+VV+IAKQYQGRGL+LQDLLQ G
Sbjct: 292  PTLVEWAAAVGISTQALQFQVNCGNFSREKLIYANFRLVVYIAKQYQGRGLNLQDLLQLG 351

Query: 916  STGLMRSVEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKK 737
            S GLM+SVEKFKP VGCRFATYAYWWIRQ+IRK++FQHSRTIRLPENVY LLSKV EAKK
Sbjct: 352  SMGLMKSVEKFKPLVGCRFATYAYWWIRQSIRKSLFQHSRTIRLPENVYTLLSKVYEAKK 411

Query: 736  VCIQKGNHRPMKEEIAATAGITVERLDRLLFTARMPLSMQQPVWMDQNTTFQEITADPTV 557
             CI++GNH+P KE+IAA AG++VE+LDRLL+T+R+PLSMQ+PVWMDQ+TTFQEITAD  V
Sbjct: 412  TCIKQGNHQPTKEDIAAAAGLSVEKLDRLLYTSRVPLSMQKPVWMDQDTTFQEITADTAV 471

Query: 556  EVPDVSVSKQLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVR 377
            E PDV  SKQ+MR+H RNLLSVL+P+ERKIIRLRFGIED  QKSLS+IG  FGLSKER+R
Sbjct: 472  EAPDVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEDGEQKSLSDIGAGFGLSKERIR 531

Query: 376  QLESRALYKLKQSLDSHGLGAYSDMII 296
            Q+ESRALYKLKQ L SHGL AY++M++
Sbjct: 532  QIESRALYKLKQCLSSHGLSAYAEMLV 558


>ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Vitis
            vinifera]
          Length = 567

 Score =  626 bits (1614), Expect = e-176
 Identities = 338/568 (59%), Positives = 413/568 (72%), Gaps = 5/568 (0%)
 Frame = -3

Query: 1984 MEAGRSLISSPSQFPPRTHIRNCVFSSSSSVLMLHEQVAPAVTSLSTSSLGRHLPSSILI 1805
            MEAG +++SS   FPPRTH RN    SSSSVLMLH+QVAPAV S+ T+ + R  P+S+L+
Sbjct: 7    MEAGTNILSSTPSFPPRTHFRN----SSSSVLMLHDQVAPAVASIPTT-IARKFPTSVLL 61

Query: 1804 QEHYDKSQPLLQQ-KEDITFQSTLDRRLTGAPSGNEANNILDSNQYVNDFQLQLQHCSAL 1628
            QE  D+ +P  Q  K++ TFQ+TL++R        +  N  D NQY+ +F+ QL     L
Sbjct: 62   QEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGL 121

Query: 1627 WYLLPSLQTKEAQS-SPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXXSTK 1451
            WY LPS QT E    S   M+SI    E +M V+P +V+                  + K
Sbjct: 122  WYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAK 181

Query: 1450 LLGVDLDDSLSPR-GLVNTP--VQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPGRS 1280
            LLG DL+DS SP  G +++P    +++TV               PK  + V EN+   R+
Sbjct: 182  LLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPK--VAVHENHGSRRA 239

Query: 1279 EVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKSRLQTQFSR 1100
            EVQRKI +G+DP DPLRLFL  PETRKLLTAK+ESELIV+IQELMRLEEVK RLQ+   R
Sbjct: 240  EVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKR 299

Query: 1099 EPTLSEWAEAVGVSCQTMQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQE 920
            EPT+ EWAEAVG+SCQ +QS LH G  SR+KLIYAN RMVVHIAKQYQGRGL+LQDLLQE
Sbjct: 300  EPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQE 359

Query: 919  GSTGLMRSVEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAK 740
            GS GLM SVEKFKP  GCRFA+YAYWWIRQA+RKAIFQHSRTIRLPEN+Y LL KV+EAK
Sbjct: 360  GSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAK 419

Query: 739  KVCIQKGNHRPMKEEIAATAGITVERLDRLLFTARMPLSMQQPVWMDQNTTFQEITADPT 560
            ++ IQ+G+H P KEEIA   GIT+E+L RLL   RMPLSMQQPVW DQ+TTFQE+TAD  
Sbjct: 420  RLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTG 479

Query: 559  VEVPDVSVSKQLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERV 380
            +E+PDVSV+KQLMR+H+RNLL VL+PKER+IIRLRFGI D   ++LSEIG +FG SKERV
Sbjct: 480  IEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERV 539

Query: 379  RQLESRALYKLKQSLDSHGLGAYSDMII 296
            RQLE RAL+KLKQ L SHGL +Y+D+++
Sbjct: 540  RQLEQRALHKLKQCLSSHGLESYTDLLV 567


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  626 bits (1614), Expect = e-176
 Identities = 338/568 (59%), Positives = 413/568 (72%), Gaps = 5/568 (0%)
 Frame = -3

Query: 1984 MEAGRSLISSPSQFPPRTHIRNCVFSSSSSVLMLHEQVAPAVTSLSTSSLGRHLPSSILI 1805
            MEAG +++SS   FPPRTH RN    SSSSVLMLH+QVAPAV S+ T+ + R  P+S+L+
Sbjct: 1    MEAGTNILSSTPSFPPRTHFRN----SSSSVLMLHDQVAPAVASIPTT-IARKFPTSVLL 55

Query: 1804 QEHYDKSQPLLQQ-KEDITFQSTLDRRLTGAPSGNEANNILDSNQYVNDFQLQLQHCSAL 1628
            QE  D+ +P  Q  K++ TFQ+TL++R        +  N  D NQY+ +F+ QL     L
Sbjct: 56   QEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGL 115

Query: 1627 WYLLPSLQTKEAQS-SPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXXSTK 1451
            WY LPS QT E    S   M+SI    E +M V+P +V+                  + K
Sbjct: 116  WYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAK 175

Query: 1450 LLGVDLDDSLSPR-GLVNTP--VQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPGRS 1280
            LLG DL+DS SP  G +++P    +++TV               PK  + V EN+   R+
Sbjct: 176  LLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPK--VAVHENHGSRRA 233

Query: 1279 EVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKSRLQTQFSR 1100
            EVQRKI +G+DP DPLRLFL  PETRKLLTAK+ESELIV+IQELMRLEEVK RLQ+   R
Sbjct: 234  EVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKR 293

Query: 1099 EPTLSEWAEAVGVSCQTMQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQE 920
            EPT+ EWAEAVG+SCQ +QS LH G  SR+KLIYAN RMVVHIAKQYQGRGL+LQDLLQE
Sbjct: 294  EPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQE 353

Query: 919  GSTGLMRSVEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAK 740
            GS GLM SVEKFKP  GCRFA+YAYWWIRQA+RKAIFQHSRTIRLPEN+Y LL KV+EAK
Sbjct: 354  GSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAK 413

Query: 739  KVCIQKGNHRPMKEEIAATAGITVERLDRLLFTARMPLSMQQPVWMDQNTTFQEITADPT 560
            ++ IQ+G+H P KEEIA   GIT+E+L RLL   RMPLSMQQPVW DQ+TTFQE+TAD  
Sbjct: 414  RLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTG 473

Query: 559  VEVPDVSVSKQLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERV 380
            +E+PDVSV+KQLMR+H+RNLL VL+PKER+IIRLRFGI D   ++LSEIG +FG SKERV
Sbjct: 474  IEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERV 533

Query: 379  RQLESRALYKLKQSLDSHGLGAYSDMII 296
            RQLE RAL+KLKQ L SHGL +Y+D+++
Sbjct: 534  RQLEQRALHKLKQCLSSHGLESYTDLLV 561


>ref|XP_011094632.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Sesamum indicum] gi|747093636|ref|XP_011094633.1|
            PREDICTED: RNA polymerase sigma factor sigF,
            chloroplastic isoform X2 [Sesamum indicum]
          Length = 496

 Score =  622 bits (1603), Expect = e-175
 Identities = 335/499 (67%), Positives = 377/499 (75%), Gaps = 5/499 (1%)
 Frame = -3

Query: 1777 LLQQKEDITFQ--STLDRR---LTGAPSGNEANNILDSNQYVNDFQLQLQHCSALWYLLP 1613
            +L  KED  FQ   TL  R   +  A S N+ N  +D +QYVN+FQLQL     LWYL P
Sbjct: 1    MLCSKEDSVFQLKQTLGMRQAVMAPASSSNDGNGNVDPDQYVNEFQLQLLRRPELWYLWP 60

Query: 1612 SLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXXSTKLLGVDL 1433
            SLQTKE Q   +TM+SI  K EK + VE   VV                    +L G  L
Sbjct: 61   SLQTKE-QLFSMTMESISNKNEKFIDVEADRVVALAREAFSACKEAAAIVKDAELFGARL 119

Query: 1432 DDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPGRSEVQRKIGQG 1253
            DDS S R L   P Q  RTV              +PK  IEVQE NH  + E QRK  +G
Sbjct: 120  DDSSSIRSLTGVPAQ--RTVRSTRLVERQMKRRRVPKPKIEVQETNHRRKPESQRKSDEG 177

Query: 1252 FDPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKSRLQTQFSREPTLSEWAE 1073
            FDPNDPLRLFL  PETR+LLT+K+ESELIVKIQELMRL+E+KSRL+ QFSREPTL EWA 
Sbjct: 178  FDPNDPLRLFLRGPETRQLLTSKEESELIVKIQELMRLQEMKSRLKVQFSREPTLVEWAA 237

Query: 1072 AVGVSCQTMQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSTGLMRSV 893
            A G+SCQ +QS +HCG SSR+KLI ANFRMVVHIAKQYQGRGLSLQDLLQEGS GLMRSV
Sbjct: 238  AAGISCQALQSQIHCGDSSRQKLICANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMRSV 297

Query: 892  EKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKKVCIQKGNH 713
            EKFKPQ GCRFATYAYWWIRQ+IRKA+FQHSRTIRLPENVY LLS+V EAKK+CIQ+GNH
Sbjct: 298  EKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSRVYEAKKLCIQQGNH 357

Query: 712  RPMKEEIAATAGITVERLDRLLFTARMPLSMQQPVWMDQNTTFQEITADPTVEVPDVSVS 533
             P KE+IAA AG++VE L+RLL+TARMPLS+Q+PVW DQ+TTFQEITAD T+EVPDV V+
Sbjct: 358  LPTKEDIAACAGMSVEGLERLLYTARMPLSLQKPVWTDQDTTFQEITADTTIEVPDVGVA 417

Query: 532  KQLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVRQLESRALY 353
            KQLMR+HIRNLLSVLSP+ERKIIRLRFGIE   QKSLSEIG  FGLSKERVRQLESRALY
Sbjct: 418  KQLMRQHIRNLLSVLSPRERKIIRLRFGIEHGEQKSLSEIGAGFGLSKERVRQLESRALY 477

Query: 352  KLKQSLDSHGLGAYSDMII 296
            KLKQ L SHGL AY++MII
Sbjct: 478  KLKQCLGSHGLAAYANMII 496


>ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Prunus
            mume]
          Length = 573

 Score =  614 bits (1583), Expect = e-172
 Identities = 340/575 (59%), Positives = 415/575 (72%), Gaps = 12/575 (2%)
 Frame = -3

Query: 1984 MEAGRSLISSPSQFPPRTHIRNCVFSSS--SSVLMLHEQVAPAVTSLSTSSLGRHLPSSI 1811
            MEAGR  +SS S FP  TH+R+ + SSS  +SVLMLHEQ  PAVTS+  +S+ RH P+S+
Sbjct: 1    MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSV 60

Query: 1810 LIQEHYDKSQPLLQQ-KEDITFQSTLDRRL--TGAPSGNEANNILDSNQYVNDFQLQLQH 1640
            L+QE  D+ +PLL   KED T ++TLDR    TGA S +E  +I D    VN  + QL +
Sbjct: 61   LLQEQRDEFKPLLHVLKEDKTSEATLDRMQIETGA-SVHEDLDIDDFYPLVNGSKPQLLN 119

Query: 1639 CSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXX 1460
               L  +  SLQT    S+PVT++S+     K M VEP NVV                  
Sbjct: 120  PDIL-DVFSSLQTGAKPSTPVTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAE 178

Query: 1459 STKLLGVDLDDSLSP----RGLVNTPVQDKRTVXXXXXXXXXXXXXXL---PKSNIEVQE 1301
             ++ +G D D+SLS       L N  V++++TV                  PKS +   E
Sbjct: 179  DSQSMGADFDESLSLGLGYTSLDNWIVEEEKTVRSTRILERRRKRIKTRKVPKSKLIGHE 238

Query: 1300 NNHPGRSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKSR 1121
            +N    S+V +KI +GF+PNDPLRLFL  PETR+LLTAK+E+ELI ++Q+L +LEEVKSR
Sbjct: 239  SNSFTSSDVPKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSR 298

Query: 1120 LQTQFSREPTLSEWAEAVGVSCQTMQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLS 941
            LQTQF REPTL EWAEAVG+SCQ ++S L  G SSREKLIYAN RMVVHIAKQYQGRGL 
Sbjct: 299  LQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLG 358

Query: 940  LQDLLQEGSTGLMRSVEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLL 761
            LQDL+QEGS GLM+SVEKFKPQ GCRFATYAYWWIRQ +RKAIFQHSRTIRLPENVY LL
Sbjct: 359  LQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLL 418

Query: 760  SKVREAKKVCIQKGNHRPMKEEIAATAGITVERLDRLLFTARMPLSMQQPVWMDQNTTFQ 581
             KV EAKK CIQ+GNH P KEE+A   GITVE+L++LL+  RMPLSMQQPVW DQ+TTFQ
Sbjct: 419  GKVLEAKKSCIQEGNHNPNKEELAIRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQ 478

Query: 580  EITADPTVEVPDVSVSKQLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIF 401
            E+TAD  VE+PDVSV+KQLMR+H+R+LLS+L+ +ER+IIRLR+GIED  Q+SLSEIG +F
Sbjct: 479  EVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLRERQIIRLRYGIEDGKQRSLSEIGGMF 538

Query: 400  GLSKERVRQLESRALYKLKQSLDSHGLGAYSDMII 296
            GLSKERVRQLESRA  KL+QSL S GLGAY  +++
Sbjct: 539  GLSKERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 573


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
            gi|462400636|gb|EMJ06193.1| hypothetical protein
            PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  613 bits (1580), Expect = e-172
 Identities = 337/571 (59%), Positives = 413/571 (72%), Gaps = 8/571 (1%)
 Frame = -3

Query: 1984 MEAGRSLISSPSQFPPRTHIRNCVFSSS--SSVLMLHEQVAPAVTSLSTSSLGRHLPSSI 1811
            MEAGR  +SS S FP  TH+R+ + SSS  +SVLMLHEQ  PAVTS+  +S+ RH P+S+
Sbjct: 1    MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSV 60

Query: 1810 LIQEHYDKSQPLLQQ-KEDITFQSTLDRRL--TGAPSGNEANNILDSNQYVNDFQLQLQH 1640
            L+QE  D+ +PLL   KED T ++ LDR    TGA S +E  +I D    VN  + QL +
Sbjct: 61   LLQEQRDEFKPLLHVLKEDKTSEAALDRMQIETGA-SVHEDLDIDDFYPLVNSSKPQLLN 119

Query: 1639 CSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXX 1460
               L  +  SLQT    S+P+T++S+     K M VEP NVV                  
Sbjct: 120  HDIL-DVFSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAE 178

Query: 1459 STKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXL---PKSNIEVQENNHP 1289
             ++ +G D DD L    L N  V++++TV                  PKS +   E+N  
Sbjct: 179  DSQSMGADFDD-LGYTSLANWIVEEEKTVRSTRILERRRKRIKTRKVPKSKVIGHESNSF 237

Query: 1288 GRSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKSRLQTQ 1109
              S+V++KI +GF+PNDPLRLFL  PETR+LLTAK+E+ELI ++Q+L +LEEVKSRLQTQ
Sbjct: 238  TGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRLQTQ 297

Query: 1108 FSREPTLSEWAEAVGVSCQTMQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDL 929
            F REPTL EWAEAVG+SCQ ++S L  G SSREKLIYAN RMVVHIAKQYQGRGL LQDL
Sbjct: 298  FGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDL 357

Query: 928  LQEGSTGLMRSVEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVR 749
            +QEGS GLM+SVEKFKPQ GCRFATYAYWWIRQ +RKAIFQHSRTIRLPENVY LL KV 
Sbjct: 358  MQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVL 417

Query: 748  EAKKVCIQKGNHRPMKEEIAATAGITVERLDRLLFTARMPLSMQQPVWMDQNTTFQEITA 569
            EAKK CIQ+GNH P KEE+A   GITVE+L++LL+  RMPLSMQQPVW DQ+TTFQE+TA
Sbjct: 418  EAKKSCIQEGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQEVTA 477

Query: 568  DPTVEVPDVSVSKQLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSK 389
            D  VE+PDVSV+KQLMR+H+R+LLS+L+ +ER+IIRLR+GIED  Q+SLSEIG +FGLSK
Sbjct: 478  DTGVEIPDVSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEIGGMFGLSK 537

Query: 388  ERVRQLESRALYKLKQSLDSHGLGAYSDMII 296
            ERVRQLESRA  KL+QSL S GLGAY  +++
Sbjct: 538  ERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 568


>ref|XP_009794385.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Nicotiana sylvestris]
          Length = 572

 Score =  605 bits (1561), Expect = e-170
 Identities = 329/568 (57%), Positives = 402/568 (70%), Gaps = 8/568 (1%)
 Frame = -3

Query: 1978 AGRSLISSP-SQFPPRTHI-RNCVFSSSSSVLMLHEQVAPAVTSLSTSSLGRHLPSSILI 1805
            AGR+L+SSP + F  +T + R+   S SSSVLML+E VAPA+TS+  + L RH+P+S++ 
Sbjct: 4    AGRNLLSSPPTTFSHKTQLSRSSPSSISSSVLMLYEHVAPALTSVPHAYLVRHVPASVIN 63

Query: 1804 QEH-YDKSQPLLQQKEDITFQSTLDRRLT-GAPSGNEANNILDSNQYVNDFQLQLQHCSA 1631
             E  ++    L   KE+ T  +T+DRRL   A S  E N+ +DS Q +N  Q+QL     
Sbjct: 64   PEQQFENRLQLHSVKEEKTSLATIDRRLVEAASSAMEENDAVDSEQNINALQVQLLRSPG 123

Query: 1630 LWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXXSTK 1451
            L YL  S   KE     +  +S+  K EK M  EPHNVV                   +K
Sbjct: 124  LSYLFSSYHLKEKVPLTLDTESLSDKGEKLMNFEPHNVVALARKALLASREAALLAEDSK 183

Query: 1450 LLGVDLDDSLSPR----GLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPGR 1283
            LLG + DDS+ P      L +  ++D+R                 P S  +VQE N   R
Sbjct: 184  LLGTNFDDSIFPNLLSTNLTDDKLKDQRIARSTRLLERRSKKRGAPTSKHQVQETNRSER 243

Query: 1282 SEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKSRLQTQFS 1103
             +V+R++ +  D NDPLR+FL  PETR+LLT K+ESELIVKIQ  M+L+EVK RLQTQF 
Sbjct: 244  PDVRRRVNESIDLNDPLRMFLWGPETRQLLTVKEESELIVKIQNTMKLQEVKHRLQTQFD 303

Query: 1102 REPTLSEWAEAVGVSCQTMQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQ 923
            REPTL EWAEA G++ + +QS L  GKSSR+KLI AN RMVVHIAKQYQGRGLSLQDLLQ
Sbjct: 304  REPTLIEWAEAAGLTSRELQSQLRSGKSSRDKLINANLRMVVHIAKQYQGRGLSLQDLLQ 363

Query: 922  EGSTGLMRSVEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREA 743
            EGS GLM+SVEKFKPQ GCRF TYAYWWIRQ +RKAIFQHSRTIRLPENVY LLSKV++A
Sbjct: 364  EGSVGLMKSVEKFKPQAGCRFPTYAYWWIRQGVRKAIFQHSRTIRLPENVYALLSKVKDA 423

Query: 742  KKVCIQKGNHRPMKEEIAATAGITVERLDRLLFTARMPLSMQQPVWMDQNTTFQEITADP 563
            KK+CIQ+GNH P +E+IA+ AG++VERL  LL  AR PLSMQQ VW DQ+ TFQEITAD 
Sbjct: 424  KKLCIQQGNHHPTREDIASCAGMSVERLQSLLSAARTPLSMQQSVWTDQDATFQEITADN 483

Query: 562  TVEVPDVSVSKQLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKER 383
             +E P++SVSKQLMRRH+RNLL+VLSPKERKIIRLRFGI D  +KSLSEIG +FGLSKER
Sbjct: 484  AIEAPELSVSKQLMRRHVRNLLNVLSPKERKIIRLRFGIGDGERKSLSEIGAVFGLSKER 543

Query: 382  VRQLESRALYKLKQSLDSHGLGAYSDMI 299
            VRQLESRALY+LKQ+L SHGL AY+D++
Sbjct: 544  VRQLESRALYRLKQNLSSHGLDAYNDLL 571


>ref|XP_009376812.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Pyrus x bretschneideri]
          Length = 573

 Score =  603 bits (1554), Expect = e-169
 Identities = 329/574 (57%), Positives = 406/574 (70%), Gaps = 11/574 (1%)
 Frame = -3

Query: 1984 MEAGRSLISSPSQFPPRTHIRNCV------FSSSSSVLMLHEQVAPAVTSLSTSSLGRHL 1823
            ME GR  +SS S FP  TH+R+ +       SSS+SVLMLHEQ   AV S+  + + RH 
Sbjct: 1    MEVGRHFLSSSSAFPSTTHLRHPLPSSPSSSSSSTSVLMLHEQATAAVPSVPITFVARHF 60

Query: 1822 PSSILIQEHYDKSQPLLQQ-KEDITFQSTLDR-RLTGAPSGNEANNILDSNQYVNDFQLQ 1649
            P+S+L+QE  D+ +PLL   KE+ T Q+TLDR ++    S NE  +I    Q V D + Q
Sbjct: 61   PTSVLLQEQRDEFKPLLHALKEEKTSQATLDRMQIETKASLNEDLDIDGFYQLVKDSEHQ 120

Query: 1648 LQHCSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXX 1469
            L + S L  +  SLQT    S+P+T++ I     K M ++P + V               
Sbjct: 121  LLNRSGLLDVFSSLQTGVKLSAPLTVEPITTASSKHMDIKPSDAVALAKKALSASKEAVS 180

Query: 1468 XXXSTKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLP---KSNIEVQEN 1298
                +K +G D DDSLS  GL N  V+D++TV                   KS + + E 
Sbjct: 181  FADGSKSMGYDFDDSLSI-GLDNWLVEDEKTVRSTRLLERRRKRLKKKRVSKSKVLIHET 239

Query: 1297 NHPGRSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKSRL 1118
            N P  S+V+RKI +GF+ NDPLRLFL  PET++LLTA++E+ELI ++Q+L +LEEVK+RL
Sbjct: 240  NSPPSSDVRRKINEGFNQNDPLRLFLWGPETKQLLTAEEEAELIARVQDLFKLEEVKNRL 299

Query: 1117 QTQFSREPTLSEWAEAVGVSCQTMQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSL 938
            Q+QF REPTL EWAEAVG+SCQ ++S L  G SSREKLIYAN RMVVHIAKQYQGRGL L
Sbjct: 300  QSQFGREPTLVEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGL 359

Query: 937  QDLLQEGSTGLMRSVEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLS 758
            QDL+QEGS GLM+SVEKFKPQ GCRFATYAYWWIRQ +RKAIFQHSRTIRLPENVY LL 
Sbjct: 360  QDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYTLLG 419

Query: 757  KVREAKKVCIQKGNHRPMKEEIAATAGITVERLDRLLFTARMPLSMQQPVWMDQNTTFQE 578
            KV EAKK CIQ+GNH P KEE+A   GITVE+L +LL++ RMPLSMQQPVW DQ++TFQE
Sbjct: 420  KVLEAKKSCIQEGNHNPNKEELARRVGITVEKLQKLLYSTRMPLSMQQPVWADQDSTFQE 479

Query: 577  ITADPTVEVPDVSVSKQLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFG 398
            ITAD   E+P VSV KQLMR+H+R+LL +L+ +ER+IIRLRFGIED  Q+SLSEIG +FG
Sbjct: 480  ITADTGTEIPHVSVEKQLMRQHVRHLLGILNLRERQIIRLRFGIEDGKQRSLSEIGNMFG 539

Query: 397  LSKERVRQLESRALYKLKQSLDSHGLGAYSDMII 296
            LSKERVRQLESRA  KLKQSL S GLGAY  +++
Sbjct: 540  LSKERVRQLESRAFLKLKQSLGSQGLGAYGPLLV 573


>ref|XP_008359645.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor sigF,
            chloroplastic-like [Malus domestica]
          Length = 571

 Score =  600 bits (1546), Expect = e-168
 Identities = 328/573 (57%), Positives = 402/573 (70%), Gaps = 10/573 (1%)
 Frame = -3

Query: 1984 MEAGRSLISSPSQFPPRTHIRNCV-----FSSSSSVLMLHEQVAPAVTSLSTSSLGRHLP 1820
            ME GR  +SS S FP  TH+R+ +      SSS+SVLMLHEQ  PAVTS+  + + RH P
Sbjct: 1    MEVGRHFLSSSSAFPSTTHLRHPLPSSPSSSSSTSVLMLHEQATPAVTSVPITFVARHFP 60

Query: 1819 SSILIQEHYDKSQPLLQQ-KEDITFQSTLDR-RLTGAPSGNEANNILDSNQYVNDFQLQL 1646
            +S+L+QE  D+ +PLL   KE+ T Q+TLDR ++    S NE   I    Q V D + QL
Sbjct: 61   TSVLLQEQRDEFKPLLHALKEEKTSQATLDRMQIEARASLNEDLKIDGFYQLVKDSEHQL 120

Query: 1645 QHCSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXX 1466
             + S L  +  SLQT+   S+ +TM+ I     K M ++P + V                
Sbjct: 121  LNRSGLLDVFSSLQTRVKSSALLTMEPITTASSKHMDIKPSDAVALAKKALSASKEAVSF 180

Query: 1465 XXSTKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLP---KSNIEVQENN 1295
               +K +G  L       GL N  V+D++TV                   KS + + E N
Sbjct: 181  AEDSKSMGDXL--MTVSEGLDNWLVEDEKTVRSARLLERRRRRLKKKRVSKSKVLIHETN 238

Query: 1294 HPGRSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKSRLQ 1115
             P  S+V++KI +G +PNDPLRLFL  PET++LLTAK+E+ELI ++Q+L +LEEVKSRLQ
Sbjct: 239  GPTSSDVRKKINEGLNPNDPLRLFLWGPETKQLLTAKEEAELIAQVQDLFKLEEVKSRLQ 298

Query: 1114 TQFSREPTLSEWAEAVGVSCQTMQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQ 935
            +QF REPTL EWAEAVG+SCQ ++S L  G SSREKLIYAN RMVVHIAKQYQGRGL LQ
Sbjct: 299  SQFGREPTLVEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQ 358

Query: 934  DLLQEGSTGLMRSVEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSK 755
            DL+QEGS GLM+SVEKFKPQ GCRFATYAYWWIRQ +RKAIFQHSRTIRLPENVY LL K
Sbjct: 359  DLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYTLLGK 418

Query: 754  VREAKKVCIQKGNHRPMKEEIAATAGITVERLDRLLFTARMPLSMQQPVWMDQNTTFQEI 575
            V EAKK CIQ+GNH P KEE+A   GITVE+L +LL++ RMPLSMQQPVW DQ+TTFQEI
Sbjct: 419  VLEAKKSCIQEGNHNPNKEELARRVGITVEKLQKLLYSTRMPLSMQQPVWADQDTTFQEI 478

Query: 574  TADPTVEVPDVSVSKQLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGL 395
            TAD   E+P VSV KQLMR+H+R+LL +L+ +ER+IIRLRFGIED  Q+SLSEIG +FGL
Sbjct: 479  TADTGTEIPHVSVEKQLMRQHVRHLLGILNLRERQIIRLRFGIEDGKQRSLSEIGNMFGL 538

Query: 394  SKERVRQLESRALYKLKQSLDSHGLGAYSDMII 296
            SKERVRQLESRA  KLKQSL S GLGAY  +++
Sbjct: 539  SKERVRQLESRAFLKLKQSLGSQGLGAYGPLLV 571


>emb|CDP06761.1| unnamed protein product [Coffea canephora]
          Length = 556

 Score =  598 bits (1543), Expect = e-168
 Identities = 332/570 (58%), Positives = 405/570 (71%), Gaps = 7/570 (1%)
 Frame = -3

Query: 1984 MEAGRSLISSPSQFPPRTHIRNCVFSSS--SSVLMLHEQVAPAVTSLSTSSLGRHLPSSI 1811
            MEA R+ +SSP  F  RTH++N   SSS  SSV +L E+VAP +T +   ++  +  +S 
Sbjct: 1    MEAARNFLSSPPTFSSRTHLKNFPSSSSTSSSVSVLREKVAPLLTRMPAVTVACYFATST 60

Query: 1810 LIQEHYDKSQPLLQ-QKEDITFQSTLDRRLT-GAPSGNEANNILDSNQYVNDFQLQLQHC 1637
             I E +++S P L+  K D   Q+TLDRRL   APS N+ ++  D +   ++  ++L   
Sbjct: 61   HISEQHEESGPSLRLMKYDRMSQATLDRRLIDAAPSANQGSDTDDPDHLKSNSHVKLLQL 120

Query: 1636 SALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXXS 1457
              LWYL  SL T+         QS+    +    VE  NVV                  +
Sbjct: 121  PGLWYLFQSLDTR---------QSVPSIPDDFTDVEAENVVALAKNALSASREAALLAEN 171

Query: 1456 TKLLGVDLDDSLSPR---GLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPG 1286
            +KL G  +DD+LSP     L + P++ K+TV              +PK  +EV++   P 
Sbjct: 172  SKLFGASVDDTLSPSLLYALTDIPLE-KKTVHSTRLLQRQPKKRRVPKPKVEVEDTRPPV 230

Query: 1285 RSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKSRLQTQF 1106
            R  +QRK    FD  DPLR+FL  PET KLLT  +ESELI KIQ+ M+ EEVKSRLQ+QF
Sbjct: 231  RPNLQRK---AFDLIDPLRVFLSGPET-KLLTVDEESELIGKIQDWMKQEEVKSRLQSQF 286

Query: 1105 SREPTLSEWAEAVGVSCQTMQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLL 926
            +REPTL EWAEA G+SC+ +Q+ LH G  SREKLIYAN RMVVHIA+QY GRGLSLQDLL
Sbjct: 287  NREPTLVEWAEAAGLSCRALQTQLHSGNRSREKLIYANHRMVVHIARQYMGRGLSLQDLL 346

Query: 925  QEGSTGLMRSVEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVRE 746
            QEGS GLMRS+EKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLP+NVYGLLSKV+E
Sbjct: 347  QEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNVYGLLSKVKE 406

Query: 745  AKKVCIQKGNHRPMKEEIAATAGITVERLDRLLFTARMPLSMQQPVWMDQNTTFQEITAD 566
            AKK+CIQ+G H P KEEIA+ AGITVE+L++LLFTARMPLSMQQPVWMDQ+TTFQE+TAD
Sbjct: 407  AKKLCIQQGIHSPTKEEIASCAGITVEKLEKLLFTARMPLSMQQPVWMDQDTTFQEVTAD 466

Query: 565  PTVEVPDVSVSKQLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKE 386
              +E  D+SVSKQLMR HIRNLL +L+PKERKIIRLRFGIED  QKSLSEIG +FGLSKE
Sbjct: 467  TAIEASDLSVSKQLMRIHIRNLLRILNPKERKIIRLRFGIEDGKQKSLSEIGAVFGLSKE 526

Query: 385  RVRQLESRALYKLKQSLDSHGLGAYSDMII 296
            RVRQLE+RALYKLKQ L+S GL AY+DM++
Sbjct: 527  RVRQLETRALYKLKQCLNSQGLNAYADMLL 556


>ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Nelumbo nucifera]
          Length = 565

 Score =  593 bits (1530), Expect = e-166
 Identities = 320/570 (56%), Positives = 402/570 (70%), Gaps = 7/570 (1%)
 Frame = -3

Query: 1984 MEAGRSLISSPSQFPPRTHIRNCVFSSSSSVLMLHEQVAPAVTSLSTSSLGRHLPSSILI 1805
            ME GR+L+SS S FPPRT ++N    SSSSV +LHEQ  P V S+ T+S+ RH P+S+L+
Sbjct: 1    MEVGRNLVSSASLFPPRTQLKN----SSSSVTLLHEQANPIVVSMPTTSITRHFPASVLL 56

Query: 1804 QEHYDKSQPLLQQ-KEDITFQSTLDRR-LTGAPSGNEANNILDSNQYVNDFQLQLQHCSA 1631
            QE  D  +P LQ  +ED T Q+ LDRR L       E       ++Y   F+ QL +   
Sbjct: 57   QEQRDDIRPFLQIIREDKTSQAMLDRRKLEDKVHLYEEKKSCQPDRYWEGFERQLLYWPG 116

Query: 1630 LWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXXSTK 1451
            LWYLLPSL   E     +  QS      K + V P + +                    +
Sbjct: 117  LWYLLPSLYKGEKPLLSMVTQSTAAGTVKNVDVRPCDALELAKKAVLASKQAASLAKDYE 176

Query: 1450 LLGVDLDDS----LSPRGLVNT-PVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPG 1286
            L G D  +S    L PR L N  P++++  V              +P+  + V E +   
Sbjct: 177  LFGADSHESFLPDLEPRNLANKIPLREEVAVRSKRLLERQSKRRWIPRPKVVVSEASTSR 236

Query: 1285 RSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKSRLQTQF 1106
            +S++ +KI +GFD NDPLRLFL  PET++LLT K+ESEL V +QEL+RLEEVK RLQ+QF
Sbjct: 237  KSDIHKKIHEGFDTNDPLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQF 296

Query: 1105 SREPTLSEWAEAVGVSCQTMQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLL 926
             REPTL EWAEAVG++CQ++QS LH G SSREK+IYANFR+VVH+AK YQG+GL+LQDLL
Sbjct: 297  DREPTLVEWAEAVGMTCQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLL 356

Query: 925  QEGSTGLMRSVEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVRE 746
            QEGS GLM+S+EKFKPQ GCRFATYAYWWIRQAIRKAIFQ+SRTIRLPENVY LLS+V++
Sbjct: 357  QEGSMGLMKSLEKFKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKK 416

Query: 745  AKKVCIQKGNHRPMKEEIAATAGITVERLDRLLFTARMPLSMQQPVWMDQNTTFQEITAD 566
            AKK+ IQ+G+H P  EE+A   GITVE+L+RL  + RMPLS+QQPVW DQ+TTFQEITAD
Sbjct: 417  AKKLFIQEGHH-PTNEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITAD 475

Query: 565  PTVEVPDVSVSKQLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKE 386
              VE PD+ V+KQLMRRH+RNL+S+L PKER+IIR+R+GIE+   KSL EIG+IFGLSKE
Sbjct: 476  TEVEKPDLCVAKQLMRRHVRNLISILPPKERRIIRMRYGIENNEPKSLQEIGSIFGLSKE 535

Query: 385  RVRQLESRALYKLKQSLDSHGLGAYSDMII 296
            RVRQLESRAL+KLKQ L S GLGAY+D+++
Sbjct: 536  RVRQLESRALHKLKQCLSSQGLGAYADLLV 565


>ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Nelumbo nucifera]
          Length = 568

 Score =  590 bits (1520), Expect = e-165
 Identities = 318/570 (55%), Positives = 400/570 (70%), Gaps = 7/570 (1%)
 Frame = -3

Query: 1984 MEAGRSLISSPSQFPPRTHIRNCVFSSSSSVLMLHEQVAPAVTSLSTSSLGRHLPSSILI 1805
            ME GR+L+SS S FPPRT ++N   SS   V +LHEQ  P V S+ T+S+ RH P+S+L+
Sbjct: 1    MEVGRNLVSSASLFPPRTQLKNSS-SSGMPVTLLHEQANPIVVSMPTTSITRHFPASVLL 59

Query: 1804 QEHYDKSQPLLQQ-KEDITFQSTLDRR-LTGAPSGNEANNILDSNQYVNDFQLQLQHCSA 1631
            QE  D  +P LQ  +ED T Q+ LDRR L       E       ++Y   F+ QL +   
Sbjct: 60   QEQRDDIRPFLQIIREDKTSQAMLDRRKLEDKVHLYEEKKSCQPDRYWEGFERQLLYWPG 119

Query: 1630 LWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXXSTK 1451
            LWYLLPSL   E     +  QS      K + V P + +                    +
Sbjct: 120  LWYLLPSLYKGEKPLLSMVTQSTAAGTVKNVDVRPCDALELAKKAVLASKQAASLAKDYE 179

Query: 1450 LLGVDLDDS----LSPRGLVNT-PVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPG 1286
            L G D  +S    L PR L N  P++++  V              +P+  + V E +   
Sbjct: 180  LFGADSHESFLPDLEPRNLANKIPLREEVAVRSKRLLERQSKRRWIPRPKVVVSEASTSR 239

Query: 1285 RSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKSRLQTQF 1106
            +S++ +KI +GFD NDPLRLFL  PET++LLT K+ESEL V +QEL+RLEEVK RLQ+QF
Sbjct: 240  KSDIHKKIHEGFDTNDPLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQF 299

Query: 1105 SREPTLSEWAEAVGVSCQTMQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLL 926
             REPTL EWAEAVG++CQ++QS LH G SSREK+IYANFR+VVH+AK YQG+GL+LQDLL
Sbjct: 300  DREPTLVEWAEAVGMTCQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLL 359

Query: 925  QEGSTGLMRSVEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVRE 746
            QEGS GLM+S+EKFKPQ GCRFATYAYWWIRQAIRKAIFQ+SRTIRLPENVY LLS+V++
Sbjct: 360  QEGSMGLMKSLEKFKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKK 419

Query: 745  AKKVCIQKGNHRPMKEEIAATAGITVERLDRLLFTARMPLSMQQPVWMDQNTTFQEITAD 566
            AKK+ IQ+G+H P  EE+A   GITVE+L+RL  + RMPLS+QQPVW DQ+TTFQEITAD
Sbjct: 420  AKKLFIQEGHH-PTNEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITAD 478

Query: 565  PTVEVPDVSVSKQLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKE 386
              VE PD+ V+KQLMRRH+RNL+S+L PKER+IIR+R+GIE+   KSL EIG+IFGLSKE
Sbjct: 479  TEVEKPDLCVAKQLMRRHVRNLISILPPKERRIIRMRYGIENNEPKSLQEIGSIFGLSKE 538

Query: 385  RVRQLESRALYKLKQSLDSHGLGAYSDMII 296
            RVRQLESRAL+KLKQ L S GLGAY+D+++
Sbjct: 539  RVRQLESRALHKLKQCLSSQGLGAYADLLV 568


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  589 bits (1519), Expect = e-165
 Identities = 315/570 (55%), Positives = 401/570 (70%), Gaps = 7/570 (1%)
 Frame = -3

Query: 1984 MEAGRSLISSPSQFPPRTHIRNCVFSS-----SSSVLMLHEQVAPAVTSLSTSSLGRHLP 1820
            MEAGR+L+SSP  FP RT +++ + SS     SSSVLM +EQ APAV S+ TSS+ RH P
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 1819 SSILIQEHYDKSQPLLQQ-KEDITFQSTLD-RRLTGAPSGNEANNILDSNQYVNDFQLQL 1646
            +S+L+QE  D+ +PLL   KED T Q+T D R +       E  N  D +Q V D + Q 
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 1645 QHCSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXX 1466
             H   LW L P ++  E  S  +TMQS+    E+++  EP + V                
Sbjct: 121  LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 1465 XXSTKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPG 1286
              + KL G +  D +S    +  P+++ +TV              + K  +   E  +  
Sbjct: 181  AENPKLNGAEFTD-ISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSR 239

Query: 1285 RSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKSRLQTQF 1106
            ++ V++K+ +GFD NDPLRLFL  PETRKLLTA +E ELI +IQ+L+RLE+ KS+LQ+QF
Sbjct: 240  KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF 299

Query: 1105 SREPTLSEWAEAVGVSCQTMQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLL 926
             REPTL EWA+A+G+SC+ ++S LH G SSREKLI AN R+VVH+AKQYQGRG+ L DLL
Sbjct: 300  GREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLL 359

Query: 925  QEGSTGLMRSVEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVRE 746
            QEGS GLM+SVEKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRTIRLPEN+Y LLS+V E
Sbjct: 360  QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLE 419

Query: 745  AKKVCIQKGNHRPMKEEIAATAGITVERLDRLLFTARMPLSMQQPVWMDQNTTFQEITAD 566
            AK++ IQ+GNH P KE++A   GITVE+L+RL+F  RMPLSMQQPVW DQ+TTFQEITAD
Sbjct: 420  AKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITAD 479

Query: 565  PTVEVPDVSVSKQLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKE 386
              VE+PD+SV KQLMR+H+RNLL++L+PKER I+RLRFGIED   KSLSE+G IFGLSKE
Sbjct: 480  TGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKE 539

Query: 385  RVRQLESRALYKLKQSLDSHGLGAYSDMII 296
            RVRQLESRALY+LKQSL       Y+D++I
Sbjct: 540  RVRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_011018731.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Populus euphratica]
          Length = 557

 Score =  589 bits (1518), Expect = e-165
 Identities = 316/564 (56%), Positives = 395/564 (70%), Gaps = 2/564 (0%)
 Frame = -3

Query: 1984 MEAGRSLISSPSQFPPRTHIRNCVFSSSSSVLMLHEQVAPAVTSLSTSSLGRHLPSSILI 1805
            MEAGR+L+SS   FP RTH++N   S  SSVL+L EQ  PAVT++ T+S  +H P+S+L+
Sbjct: 1    MEAGRTLLSSSPSFPTRTHLKN---SLCSSVLILREQATPAVTAIPTTSTAQHFPTSVLL 57

Query: 1804 QEHYDKSQPLLQQ-KEDITFQSTLDRRLTG-APSGNEANNILDSNQYVNDFQLQLQHCSA 1631
            QE  D+ +PL    KED   Q+TLDRR T    SG+E  +  + +Q V +F+ QL H   
Sbjct: 58   QEQRDEFRPLQNIFKEDRPSQATLDRRKTEIGTSGHEGKDSDELDQMVENFEYQLHHWPT 117

Query: 1630 LWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXXSTK 1451
             W LLP  Q  +  S   T QS+ R  +K + VEP +V+                  ++ 
Sbjct: 118  YWNLLPPSQKGQNPSMSFTTQSVTRSTDKLIDVEPTDVINLAKRALSASKHAAFLADNST 177

Query: 1450 LLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPGRSEVQ 1271
             L     D+L+     +  +++ R V              +PK+   + E      ++VQ
Sbjct: 178  DL-----DNLASTSSSSFSLEEVRIVRSRRHLARQSLNRRVPKTKDMIFETYDSKSADVQ 232

Query: 1270 RKIGQGFDPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKSRLQTQFSREPT 1091
            +++ QGFDPNDPLRLFL  PET++LLTAK+E ELI +IQ+LM LE VK+RL++QF REPT
Sbjct: 233  KRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPT 292

Query: 1090 LSEWAEAVGVSCQTMQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGST 911
            L EWA+AVG+SC  ++  LH G  SREKLI AN RMVVHIAK+YQ RGL LQDLLQEG+ 
Sbjct: 293  LVEWAQAVGLSCSVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTV 352

Query: 910  GLMRSVEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKKVC 731
            GLM+S+EKFKPQ GCRFATYAYWWIRQ I KAIFQHSRTIRLPENVYGLL KV EAK+  
Sbjct: 353  GLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRSY 412

Query: 730  IQKGNHRPMKEEIAATAGITVERLDRLLFTARMPLSMQQPVWMDQNTTFQEITADPTVEV 551
            IQ+GNH+P  EEIA   GI +++L++LL   R PLSMQQ VW DQNTTFQEITAD  +E+
Sbjct: 413  IQEGNHQPTTEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIEI 472

Query: 550  PDVSVSKQLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVRQL 371
            PDVSV+KQLMR+HIR LL++LS KER+IIRLRFGIED  QKSLSEIG +FGLSKERVRQL
Sbjct: 473  PDVSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQL 532

Query: 370  ESRALYKLKQSLDSHGLGAYSDMI 299
            ESRALYKLKQ + SHGL AY+D++
Sbjct: 533  ESRALYKLKQCVGSHGLDAYADLL 556


>ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum tuberosum]
          Length = 562

 Score =  589 bits (1518), Expect = e-165
 Identities = 322/566 (56%), Positives = 394/566 (69%), Gaps = 6/566 (1%)
 Frame = -3

Query: 1978 AGRSLISSPSQFPPRTHIRNCVFSSSSSVLMLHEQVAPAVTSLSTSSLGRHLPSSIL-IQ 1802
            AGR+L+SSP  F  +T +RNC    SSSVLMLHE  AP ++S+  + LGRH+P+S +  +
Sbjct: 4    AGRNLLSSPPTFSQKTQLRNC----SSSVLMLHEHAAPVLSSVPHAYLGRHVPASAIGPE 59

Query: 1801 EHYDKSQPLLQQKEDITFQSTLDRRLTGAPSGN-EANNILDSNQYVNDFQLQLQHCSALW 1625
            + ++    L   KE+ T  +T+DRRL  A S   E N+ +DS Q +N  Q+QL  C    
Sbjct: 60   QQFENRLQLHLVKEEKTSLATIDRRLVDAASSELEENDAVDSEQNINALQVQLLRCPGPS 119

Query: 1624 YLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXXSTKLL 1445
            Y  P    K         + +  K +K M  EPH+VV                   +KLL
Sbjct: 120  YSFPPYYLKGKGPLSPNKEPLHSKGDKLMNFEPHSVVALARKALLASREAALLAEDSKLL 179

Query: 1444 GVDLDDSLSPR----GLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPGRSE 1277
                DDS  P      LV+  ++++RTV               PK   +VQE N  GR +
Sbjct: 180  ----DDSNFPNFLSTNLVDDKLKEQRTVRSTRFTERQSRKRGAPKPTQQVQETNRSGRPD 235

Query: 1276 VQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKSRLQTQFSRE 1097
            V+RK+ +  D NDPLR+FL  PET++LLTAK+ESELIVKIQ  M+L+EVK +LQ QF+ E
Sbjct: 236  VRRKVNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAHE 295

Query: 1096 PTLSEWAEAVGVSCQTMQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLLQEG 917
            PT  EWAEA G++ + ++S L  GKSSREKLI AN RMVVHIAKQYQGRGL+LQDLLQEG
Sbjct: 296  PTSVEWAEAAGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEG 355

Query: 916  STGLMRSVEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVREAKK 737
            S GLM+SVEKFKPQ GCRF TYAYWWIRQ++RKAIFQHSRTIRLPENVY LLSKV++AKK
Sbjct: 356  SMGLMKSVEKFKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKK 415

Query: 736  VCIQKGNHRPMKEEIAATAGITVERLDRLLFTARMPLSMQQPVWMDQNTTFQEITADPTV 557
             CIQ+GN  P KE+IA+ AG++VERL  LL   R PLSMQQ VW DQ+TTFQEITAD  +
Sbjct: 416  ECIQQGNRYPTKEDIASCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQEITADNAI 475

Query: 556  EVPDVSVSKQLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKERVR 377
            E P++SVSKQLMRRHIR LL+VLSPKERKIIRLRFGI D   KSLSEIGT+FGLSKERVR
Sbjct: 476  EAPELSVSKQLMRRHIRGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGTVFGLSKERVR 535

Query: 376  QLESRALYKLKQSLDSHGLGAYSDMI 299
            QLE+RALYKLKQ+L+ HGL AYSD++
Sbjct: 536  QLETRALYKLKQNLNKHGLDAYSDLL 561


>gb|KDO48072.1| hypothetical protein CISIN_1g008352mg [Citrus sinensis]
          Length = 569

 Score =  588 bits (1515), Expect = e-165
 Identities = 315/570 (55%), Positives = 400/570 (70%), Gaps = 7/570 (1%)
 Frame = -3

Query: 1984 MEAGRSLISSPSQFPPRTHIRNCVFSS-----SSSVLMLHEQVAPAVTSLSTSSLGRHLP 1820
            MEAGR+L+SSP  FP RT +++ + SS     SSSVLM +EQ APAV S+ TSS+ RH P
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 1819 SSILIQEHYDKSQPLLQQ-KEDITFQSTLD-RRLTGAPSGNEANNILDSNQYVNDFQLQL 1646
            +S+L+QE  D+ +PLL   KED T Q+T D R +       E  N  D +Q V D + Q 
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 1645 QHCSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXX 1466
             H   LW L P ++  E  S  +TMQS+    E+++  EP + V                
Sbjct: 121  LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 1465 XXSTKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHPG 1286
              + KL G +  D +S    +  P+++ +                + K  +   E  +  
Sbjct: 181  AENPKLNGAEFTD-ISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSR 239

Query: 1285 RSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKSRLQTQF 1106
            ++ V++K+ +GFD NDPLRLFL  PETRKLLTA +E ELI +IQ+L+RLE+ KS+LQ+QF
Sbjct: 240  KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF 299

Query: 1105 SREPTLSEWAEAVGVSCQTMQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDLL 926
             REPTL EWA+A+G+SC+ ++S LH G SSREKLI AN R+VVH+AKQYQGRG+SL DLL
Sbjct: 300  GREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359

Query: 925  QEGSTGLMRSVEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVRE 746
            QEGS GLM+SVEKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRTIRLPEN+Y LLSKV E
Sbjct: 360  QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLE 419

Query: 745  AKKVCIQKGNHRPMKEEIAATAGITVERLDRLLFTARMPLSMQQPVWMDQNTTFQEITAD 566
            AK++ IQ+GNH P KE++A   GITVE+L+RL+F  RMPLSMQQPVW DQ+TTFQEITAD
Sbjct: 420  AKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITAD 479

Query: 565  PTVEVPDVSVSKQLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSKE 386
              VE+PD+SV KQLMR+H+RNLL++L+PKER I+RLRFGIED   KSLSE+G IFGLSKE
Sbjct: 480  TGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKE 539

Query: 385  RVRQLESRALYKLKQSLDSHGLGAYSDMII 296
            RVRQLESRALY+LKQSL       Y+D++I
Sbjct: 540  RVRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  588 bits (1515), Expect = e-165
 Identities = 314/571 (54%), Positives = 401/571 (70%), Gaps = 8/571 (1%)
 Frame = -3

Query: 1984 MEAGRSLISSPSQFPPRTHIRNCVFSSSSS------VLMLHEQVAPAVTSLSTSSLGRHL 1823
            MEAGR+L+SSP  FP RT +++ + SS+SS      VLM +EQ APAV S+ TSS+ RH 
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAVLMHNEQSAPAVASVPTSSVARHF 60

Query: 1822 PSSILIQEHYDKSQPLLQQ-KEDITFQSTLD-RRLTGAPSGNEANNILDSNQYVNDFQLQ 1649
            P+S+L+QE  D+ +PLL   KED T Q+T D R +       E  N  D +Q V D + Q
Sbjct: 61   PTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQ 120

Query: 1648 LQHCSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXX 1469
              H   LW L P ++  E  S  +TMQS+    E+++  EP + V               
Sbjct: 121  FLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAAS 180

Query: 1468 XXXSTKLLGVDLDDSLSPRGLVNTPVQDKRTVXXXXXXXXXXXXXXLPKSNIEVQENNHP 1289
               + KL G +  D +S    +  P+++ +TV              + K  +   E  + 
Sbjct: 181  LAENPKLNGAEFTD-ISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNS 239

Query: 1288 GRSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKSRLQTQ 1109
             ++ V++K+ +GFD NDPLRLFL  PETRKLLTA +E ELI +IQ+L+RLE+ KS+LQ+Q
Sbjct: 240  RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 299

Query: 1108 FSREPTLSEWAEAVGVSCQTMQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQDL 929
            F REPTL EWA+A+G+SC+ ++S LH G SSREKLI AN R+VVH+AKQYQGRG+ L DL
Sbjct: 300  FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDL 359

Query: 928  LQEGSTGLMRSVEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSKVR 749
            LQEGS GLM+SVEKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRTIRLPEN+Y LLS+V 
Sbjct: 360  LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVL 419

Query: 748  EAKKVCIQKGNHRPMKEEIAATAGITVERLDRLLFTARMPLSMQQPVWMDQNTTFQEITA 569
            EAK++ IQ+GNH P KE++A   GITVE+L+RL+F  RMPLSMQQPVW DQ+TTFQEITA
Sbjct: 420  EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITA 479

Query: 568  DPTVEVPDVSVSKQLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGLSK 389
            D  VE+PD+SV KQLMR+H+RNLL++L+PKER I+RLRFGIED   KSLSE+G IFGLSK
Sbjct: 480  DTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSK 539

Query: 388  ERVRQLESRALYKLKQSLDSHGLGAYSDMII 296
            ERVRQLESRALY+LKQSL       Y+D++I
Sbjct: 540  ERVRQLESRALYRLKQSLGGKASYGYADLLI 570


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
            gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
            rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  585 bits (1509), Expect = e-164
 Identities = 322/573 (56%), Positives = 402/573 (70%), Gaps = 10/573 (1%)
 Frame = -3

Query: 1984 MEAGRSLISSPSQFPPRTHIRNCVFS-SSSSVLMLHEQVAPAVTSLSTSSLGRHLPSSIL 1808
            MEA R+L+S P  F  RT +++ VFS SSSSVLM HEQ APA TS+  +S+ RH P+S+L
Sbjct: 1    MEAARNLLSPPPTFSTRTQLKSSVFSTSSSSVLMFHEQAAPAATSIPITSVARHFPTSVL 60

Query: 1807 IQEHYDKSQPLLQQ---KEDITFQSTLDRR-LTGAPSGNEANNILDSNQYVNDFQLQLQH 1640
            +QE  D  +PL      KED  +    D++ +    S NE N   +  Q    F+ +L  
Sbjct: 61   LQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNEENASNNFGQL--GFEKKLLQ 118

Query: 1639 CSALWYLLPSLQTKEAQSSPVTMQSILRKEEKAMGVEPHNVVXXXXXXXXXXXXXXXXXX 1460
               L  LL  L+++E  SS   MQS+    ++ + VEP N+V                  
Sbjct: 119  WPDLTQLLSLLESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAKKALSASKQAASLSE 178

Query: 1459 STKLLGVDLDDSLSPR-GLVNT---PVQDKRTVXXXXXXXXXXXXXXLP-KSNIEVQENN 1295
              KL   DLDDSLS   G  N+   PV+ +  V                 +  + ++E  
Sbjct: 179  DLKL---DLDDSLSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRRRVQPKVTIRETY 235

Query: 1294 HPGRSEVQRKIGQGFDPNDPLRLFLGEPETRKLLTAKQESELIVKIQELMRLEEVKSRLQ 1115
               R++V+RK+ +GFDPNDPLRLFL  PET++LLTAK+ESEL  ++Q LMRLE+VKS+LQ
Sbjct: 236  SSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLMRLEKVKSKLQ 295

Query: 1114 TQFSREPTLSEWAEAVGVSCQTMQSHLHCGKSSREKLIYANFRMVVHIAKQYQGRGLSLQ 935
            +QF REPTL EWAEA+G+ C  +Q+ LH G SSR+KLIYAN RMVVHIAKQYQ RGLSLQ
Sbjct: 296  SQFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAKQYQSRGLSLQ 355

Query: 934  DLLQEGSTGLMRSVEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPENVYGLLSK 755
            DLLQEGS GLM+SVE+FKPQVGCRFATYAYWWIRQ IRK+I QHSRT+RLPENV+ LLSK
Sbjct: 356  DLLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRLPENVHTLLSK 415

Query: 754  VREAKKVCIQKGNHRPMKEEIAATAGITVERLDRLLFTARMPLSMQQPVWMDQNTTFQEI 575
            V +AKK  I++GNH P KEE+A   GITVE+LD+LLFT RMPLSMQQ VW+DQ+ TFQE+
Sbjct: 416  VLDAKKSYIREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQQSVWVDQDITFQEV 475

Query: 574  TADPTVEVPDVSVSKQLMRRHIRNLLSVLSPKERKIIRLRFGIEDVNQKSLSEIGTIFGL 395
            T D  +E+PDVSV+KQLMR+H+RNLLSVLSP+ER II+LRFGIE+  + SLSEIG +FGL
Sbjct: 476  TPDTGIEIPDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEESKENSLSEIGNMFGL 535

Query: 394  SKERVRQLESRALYKLKQSLDSHGLGAYSDMII 296
            SKERVRQLESRALYKLKQ L+ HGLGAY D+++
Sbjct: 536  SKERVRQLESRALYKLKQCLNKHGLGAYVDLLV 568