BLASTX nr result
ID: Forsythia21_contig00010375
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Forsythia21_contig00010375
(2322 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003606056.1| 30S ribosomal protein S11 [Medicago truncatula] 511 0.0
ref|YP_003359390.1| RNA polymerase alpha subunit (chloroplast) [... 634 e-179
ref|YP_009110633.1| RNA polymerase alpha subunit (chloroplast) [... 630 e-177
ref|YP_004935698.1| rpoA gene product (chloroplast) [Sesamum ind... 607 e-170
ref|YP_008815969.1| RNA polymerase alpha subunit (chloroplast) [... 604 e-169
ref|YP_007353946.1| RNA polymerase alpha subunit (chloroplast) [... 602 e-169
gb|ADD31211.1| RNA polymerase alpha subunit protein (chloroplast... 601 e-169
ref|YP_009117253.1| RNA polymerase alpha subunit (chloroplast) [... 598 e-168
ref|YP_008964066.1| RNA polymerase subunit alpha [Ajuga reptans]... 598 e-168
ref|YP_009115927.1| RNA polymerase alpha subunit [Scrophularia t... 598 e-168
ref|YP_009041119.1| RNA polymerase alpha subunit [Rhazya stricta... 595 e-167
gb|ADD31214.1| RNA polymerase alpha subunit protein (chloroplast... 594 e-167
gb|ADD31215.1| RNA polymerase alpha subunit protein (chloroplast... 593 e-166
ref|YP_538881.1| RNA polymerase alpha subunit [Solanum bulbocast... 588 e-165
ref|YP_008563120.1| RNA polymerase alpha subunit (chloroplast) [... 586 e-164
ref|YP_009132076.1| RNA polymerase alpha subunit (chloroplast) [... 586 e-164
gb|AIW05465.1| RNA polymerase alpha subunit [Neobracea bahamensis] 585 e-164
ref|YP_009128212.1| RNA polymerase alpha subunit (chloroplast) [... 585 e-164
ref|YP_009123556.1| RNA polymerase alpha subunit (plastid) [Phys... 584 e-163
ref|YP_004891639.1| rpoA gene product (chloroplast) [Nicotiana u... 583 e-163
>ref|XP_003606056.1| 30S ribosomal protein S11 [Medicago truncatula]
Length = 466
Score = 511 bits (1315), Expect(2) = 0.0
Identities = 264/331 (79%), Positives = 279/331 (84%), Gaps = 4/331 (1%)
Frame = +3
Query: 1131 REKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCI 1310
R+KV VS RTLQWKCVESR DSKRLYYGRFILSPL KGQADTIGIAMRR LLGEIEGTCI
Sbjct: 136 RQKVKVSARTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTIGIAMRRILLGEIEGTCI 195
Query: 1311 TRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDII 1490
TR K E +PHEYSTI GIQES+HEILMNLKEIVL+SNLYGT DASIC +GPGYVTAQDII
Sbjct: 196 TRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLKSNLYGTRDASICFKGPGYVTAQDII 255
Query: 1491 LPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVRNA 1670
LPP VEIVDNTQHIA+LTEPI+LCI LQIER RGY IK +N QDGSY IDAVFMPVRNA
Sbjct: 256 LPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNA 315
Query: 1671 NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLEDN 1850
NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EA RNLIDLFIPFLH EEENL E+N
Sbjct: 316 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENN 375
Query: 1851 QHTVPLSPLTFHD--XXXXXXXXXXXXXXXSIFIDQSELSPRVYNCLKRSNIYTLLDLLN 2024
QH V L TFHD SIFIDQ ELSPR+YNCLK+SNI+TLL+LLN
Sbjct: 376 QHKVTLPLFTFHDRLLKDKLRKNKKEIALKSIFIDQLELSPRIYNCLKKSNIHTLLELLN 435
Query: 2025 KSQEDLMKIEHLRLEDVKQILVIL--EKHFA 2111
KSQEDLMKIEH R+EDVK IL IL EKHFA
Sbjct: 436 KSQEDLMKIEHFRVEDVKNILNILQIEKHFA 466
Score = 196 bits (497), Expect(2) = 0.0
Identities = 94/108 (87%), Positives = 102/108 (94%)
Frame = +1
Query: 703 RRIPKGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCGFKGTRRGTPFAAQTAAANIIHT 882
R+IPKGVI+VQASFNNTIVTVTDVRGRV+SWSSAG+CGFKGTRRGTPFAAQTAAAN I T
Sbjct: 23 RKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCGFKGTRRGTPFAAQTAAANAIRT 82
Query: 883 IADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 1026
+ DQGMQRA V+IKGPGLGRDAALRAI RSGILL F+RDVTP+PHNGC
Sbjct: 83 VVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIRDVTPIPHNGC 130
>ref|YP_003359390.1| RNA polymerase alpha subunit (chloroplast) [Olea europaea]
gi|330850774|ref|YP_004376452.1| RNA polymerase alpha
subunit [Olea europaea subsp. europaea]
gi|334700313|ref|YP_004563812.1| RNA polymerase alpha
subunit [Olea europaea subsp. cuspidata]
gi|334701650|ref|YP_004564035.1| RNA polymerase alpha
subunit [Olea woodiana subsp. woodiana]
gi|334701919|ref|YP_004564528.1| RNA polymerase alpha
subunit [Olea europaea subsp. maroccana]
gi|281428718|gb|ADA69957.1| RNA polymerase alpha subunit
(chloroplast) [Olea europaea] gi|291059284|gb|ADD72120.1|
RNA polymerase alpha subunit [Olea europaea]
gi|328795464|emb|CBR30346.1| RNA polymerase alpha subunit
[Olea europaea subsp. europaea]
gi|334084432|emb|CBR23861.1| RNA polymerase alpha subunit
[Olea europaea subsp. cuspidata]
gi|334084518|emb|CBR24655.1| RNA polymerase alpha subunit
[Olea europaea subsp. europaea]
gi|334084604|emb|CBR30439.1| RNA polymerase alpha subunit
[Olea europaea subsp. europaea]
gi|334084690|emb|CBS29383.1| RNA polymerase alpha subunit
[Olea woodiana subsp. woodiana]
gi|334084895|emb|CBS29273.1| RNA polymerase alpha subunit
[Olea europaea subsp. maroccana]
gi|334084981|emb|CBJ04329.1| RNA polymerase alpha subunit
[Olea europaea subsp. cuspidata]
gi|334085067|emb|CBR23770.1| RNA polymerase alpha subunit
[Olea europaea subsp. cuspidata]
gi|510934435|emb|CCQ09133.1| RNA polymerase alpha subunit
(chloroplast) [Olea europaea subsp. europaea]
Length = 337
Score = 634 bits (1636), Expect = e-179
Identities = 314/337 (93%), Positives = 318/337 (94%)
Frame = +3
Query: 1125 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1304
MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1305 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1484
CITR+K ENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 1485 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1664
IILPPYVEIVDNTQHIASLTEPIDLCIGLQI+RNRGYLIKMPHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVR 180
Query: 1665 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1844
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 240
Query: 1845 DNQHTVPLSPLTFHDXXXXXXXXXXXXXXXSIFIDQSELSPRVYNCLKRSNIYTLLDLLN 2024
DNQHTVPLSPLTFHD SIFIDQSE SPRVYNCLKRSNIYTLLDLLN
Sbjct: 241 DNQHTVPLSPLTFHDKLDKLRKNKKKIALKSIFIDQSEFSPRVYNCLKRSNIYTLLDLLN 300
Query: 2025 KSQEDLMKIEHLRLEDVKQILVILEKHFAVDLPKKKF 2135
S EDLMKIEHLRLED+KQILVILEKHFA+DLPKKKF
Sbjct: 301 NSPEDLMKIEHLRLEDIKQILVILEKHFAIDLPKKKF 337
>ref|YP_009110633.1| RNA polymerase alpha subunit (chloroplast) [Hesperelaea palmeri]
gi|725798317|emb|CED79793.1| RNA polymerase alpha subunit
(chloroplast) [Hesperelaea palmeri]
Length = 337
Score = 630 bits (1624), Expect = e-177
Identities = 312/337 (92%), Positives = 316/337 (93%)
Frame = +3
Query: 1125 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1304
MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1305 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1484
CITR+K ENVPHEYSTIAGIQESVHEI MNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTIAGIQESVHEIFMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 1485 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1664
IILPPYVEIVDNTQHIASLTEPIDLCIGLQI+RNRGYLIKMPHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVR 180
Query: 1665 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1844
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 240
Query: 1845 DNQHTVPLSPLTFHDXXXXXXXXXXXXXXXSIFIDQSELSPRVYNCLKRSNIYTLLDLLN 2024
DNQHTVPLSPLTFH SIFIDQSE SPRVYNCLKRSNIYTLLDLLN
Sbjct: 241 DNQHTVPLSPLTFHAKLDKLRKNKKKIALKSIFIDQSEFSPRVYNCLKRSNIYTLLDLLN 300
Query: 2025 KSQEDLMKIEHLRLEDVKQILVILEKHFAVDLPKKKF 2135
S EDLMKIEHLRLED+KQILVILEKHFA+DLPKKKF
Sbjct: 301 NSPEDLMKIEHLRLEDIKQILVILEKHFAIDLPKKKF 337
>ref|YP_004935698.1| rpoA gene product (chloroplast) [Sesamum indicum]
gi|347448327|gb|AEO92738.1| RNA polymerase alpha subunit
(chloroplast) [Sesamum indicum]
gi|496538633|gb|AGL45368.1| RpoA (chloroplast) [Sesamum
indicum]
Length = 337
Score = 607 bits (1564), Expect = e-170
Identities = 302/336 (89%), Positives = 307/336 (91%)
Frame = +3
Query: 1125 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1304
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1305 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1484
CITR+K ENVPHEYSTI GIQESVHEILMNLKEIVLRSNLYGTCDASICV+GPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVKGPGYVTAQD 120
Query: 1485 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1664
IILPPYVEIVDNTQHIASLTEPI CIGL+IERNRGYLIKMP NFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIHFCIGLEIERNRGYLIKMPQNFQDGSYPIDAVFMPVR 180
Query: 1665 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1844
N NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLHKEEENLPLE
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLE 240
Query: 1845 DNQHTVPLSPLTFHDXXXXXXXXXXXXXXXSIFIDQSELSPRVYNCLKRSNIYTLLDLLN 2024
DNQ TVPLSP TFHD SIFIDQSELSPRVYNCLKRSNIYTLLDLLN
Sbjct: 241 DNQRTVPLSPFTFHDKLDKLRKNKNKIALKSIFIDQSELSPRVYNCLKRSNIYTLLDLLN 300
Query: 2025 KSQEDLMKIEHLRLEDVKQILVILEKHFAVDLPKKK 2132
SQEDLMKIEH RLEDVK+I ILEKHFA+DLPKKK
Sbjct: 301 NSQEDLMKIEHFRLEDVKEIWGILEKHFAIDLPKKK 336
>ref|YP_008815969.1| RNA polymerase alpha subunit (chloroplast) [Lindenbergia
philippensis] gi|557136896|emb|CDI43950.1| RNA polymerase
alpha subunit (chloroplast) [Lindenbergia philippensis]
Length = 336
Score = 604 bits (1557), Expect = e-169
Identities = 303/337 (89%), Positives = 308/337 (91%)
Frame = +3
Query: 1125 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1304
MVREK+TVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRR LLGEIEGT
Sbjct: 1 MVREKITVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGT 60
Query: 1305 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1484
CITR+K ENV HEYSTI GIQESVHEILMNLKEIVLRSNLYGTCDASICV GPGYVTAQD
Sbjct: 61 CITRVKSENVSHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVMGPGYVTAQD 120
Query: 1485 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1664
IILPPYVEIVDNTQHIASLTEPI+LCIGL+IERNRGYLIKMPHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 180
Query: 1665 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1844
N NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLHKEEENLPLE
Sbjct: 181 NMNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLE 240
Query: 1845 DNQHTVPLSPLTFHDXXXXXXXXXXXXXXXSIFIDQSELSPRVYNCLKRSNIYTLLDLLN 2024
DNQ TVPLSP TFHD SIFIDQSELSPRVYNCLKRSNIYTLLDLLN
Sbjct: 241 DNQRTVPLSPFTFHD-KLDKLSKNKKITLKSIFIDQSELSPRVYNCLKRSNIYTLLDLLN 299
Query: 2025 KSQEDLMKIEHLRLEDVKQILVILEKHFAVDLPKKKF 2135
SQEDLMKIEH RLEDVKQIL ILEKHFA+DL KKKF
Sbjct: 300 NSQEDLMKIEHFRLEDVKQILGILEKHFAIDLQKKKF 336
>ref|YP_007353946.1| RNA polymerase alpha subunit (chloroplast) [Tectona grandis]
gi|438687635|emb|CCP47162.1| RNA polymerase alpha subunit
(chloroplast) [Tectona grandis]
gi|438688319|emb|CCP47251.1| RNA polymerase alpha subunit
(chloroplast) [Tectona grandis]
gi|438688443|emb|CCP47340.1| RNA polymerase alpha subunit
(chloroplast) [Tectona grandis]
Length = 337
Score = 602 bits (1551), Expect = e-169
Identities = 300/337 (89%), Positives = 308/337 (91%)
Frame = +3
Query: 1125 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1304
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1305 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1484
CITR+K ENVPHEYSTI GIQESVHEI+MNLKEIVLRSNLYGTC ASICVRGPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTITGIQESVHEIIMNLKEIVLRSNLYGTCGASICVRGPGYVTAQD 120
Query: 1485 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1664
IILPPYVEIVDNTQHIASLTEPI+LCI L+IERNRGYLIKMPHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINLCIELEIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 180
Query: 1665 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1844
N NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFL+KEEENL LE
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKEEENLLLE 240
Query: 1845 DNQHTVPLSPLTFHDXXXXXXXXXXXXXXXSIFIDQSELSPRVYNCLKRSNIYTLLDLLN 2024
DNQHTV LSP TFHD SIFIDQSEL PRVYNCLKRSNIYTLLDLLN
Sbjct: 241 DNQHTVLLSPFTFHDKLDKVRKNKKKIALKSIFIDQSELPPRVYNCLKRSNIYTLLDLLN 300
Query: 2025 KSQEDLMKIEHLRLEDVKQILVILEKHFAVDLPKKKF 2135
SQEDLMKIEH RLEDVKQIL +L+KHFA+DLPKKKF
Sbjct: 301 NSQEDLMKIEHFRLEDVKQILGVLKKHFAIDLPKKKF 337
>gb|ADD31211.1| RNA polymerase alpha subunit protein (chloroplast) [Antirrhinum
majus]
Length = 336
Score = 601 bits (1550), Expect = e-169
Identities = 297/337 (88%), Positives = 308/337 (91%)
Frame = +3
Query: 1125 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1304
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1305 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1484
CITR+K EN+PHEYSTI GIQESVHEILMNLKEIVLR+NLYGTCDASIC RGPGYVTAQD
Sbjct: 61 CITRVKSENIPHEYSTITGIQESVHEILMNLKEIVLRTNLYGTCDASICARGPGYVTAQD 120
Query: 1485 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1664
IILPPYVEIVDNTQHIASLTEPI+ CIGL+IERNRGYLIKMPHNFQDGSY IDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINFCIGLEIERNRGYLIKMPHNFQDGSYSIDAVFMPVR 180
Query: 1665 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1844
N NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLHKEEENLPL+
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLD 240
Query: 1845 DNQHTVPLSPLTFHDXXXXXXXXXXXXXXXSIFIDQSELSPRVYNCLKRSNIYTLLDLLN 2024
DNQHT+PLSP +FHD SIFIDQSELSPR YNCLKRSNIYTL DLLN
Sbjct: 241 DNQHTIPLSPFSFHD-KLDKLRKNKKIALKSIFIDQSELSPRAYNCLKRSNIYTLFDLLN 299
Query: 2025 KSQEDLMKIEHLRLEDVKQILVILEKHFAVDLPKKKF 2135
SQEDLMKIEH RL+DVK+IL ILEKHFA+DLPKKKF
Sbjct: 300 NSQEDLMKIEHFRLKDVKEILGILEKHFAIDLPKKKF 336
>ref|YP_009117253.1| RNA polymerase alpha subunit (chloroplast) [Premna microphylla]
gi|748013937|gb|AJE28407.1| RNA polymerase alpha subunit
(chloroplast) [Premna microphylla]
Length = 336
Score = 598 bits (1542), Expect = e-168
Identities = 296/335 (88%), Positives = 306/335 (91%)
Frame = +3
Query: 1125 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1304
MVREKVT STRTLQWKCVESR D KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTASTRTLQWKCVESRTDGKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1305 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1484
C+TR+K ENVPHEYSTI GIQESVHEI+MNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CLTRVKSENVPHEYSTITGIQESVHEIIMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 1485 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1664
IILPPYVEIVDNTQHIASLTEPI LCIGL+IERNRGYL+KMP+NFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPISLCIGLEIERNRGYLVKMPNNFQDGSYPIDAVFMPVR 180
Query: 1665 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1844
N NHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFL+KEEENLPLE
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLYKEEENLPLE 240
Query: 1845 DNQHTVPLSPLTFHDXXXXXXXXXXXXXXXSIFIDQSELSPRVYNCLKRSNIYTLLDLLN 2024
DNQHTVPLSP FHD SIFIDQSELSPRVYNCLKRSNIYTLLDLLN
Sbjct: 241 DNQHTVPLSPFPFHDKLDKARKNKKKIALKSIFIDQSELSPRVYNCLKRSNIYTLLDLLN 300
Query: 2025 KSQEDLMKIEHLRLEDVKQILVILEKHFAVDLPKK 2129
SQEDLMKIEH RLEDVKQIL IL+K+FA+DL KK
Sbjct: 301 NSQEDLMKIEHFRLEDVKQILGILKKYFAIDLQKK 335
>ref|YP_008964066.1| RNA polymerase subunit alpha [Ajuga reptans]
gi|558697182|gb|AHA84937.1| RNA polymerase subunit alpha
[Ajuga reptans]
Length = 337
Score = 598 bits (1542), Expect = e-168
Identities = 298/337 (88%), Positives = 306/337 (90%)
Frame = +3
Query: 1125 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1304
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1305 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1484
CITR+K ENVPHEYSTI GIQESVHEI+MNLKEIVLRSNLYGT DASICVRGPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTITGIQESVHEIIMNLKEIVLRSNLYGTFDASICVRGPGYVTAQD 120
Query: 1485 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1664
IILPPYVEIVDNTQHIASLTEPI+LCIGL+IERNRGYLIKMPH FQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINLCIGLKIERNRGYLIKMPHKFQDGSYPIDAVFMPVR 180
Query: 1665 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1844
N NHSIHSYGNGNEKQEILFLEIWTNGSL PKEALHEA RNLIDLFIPFL+KEEENLPLE
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLNPKEALHEASRNLIDLFIPFLYKEEENLPLE 240
Query: 1845 DNQHTVPLSPLTFHDXXXXXXXXXXXXXXXSIFIDQSELSPRVYNCLKRSNIYTLLDLLN 2024
DNQHT PLSP TFHD SIFIDQSELSP+VYNCLKRSNIYTLLDLLN
Sbjct: 241 DNQHTAPLSPFTFHDKFDKVRKNKKKIALQSIFIDQSELSPKVYNCLKRSNIYTLLDLLN 300
Query: 2025 KSQEDLMKIEHLRLEDVKQILVILEKHFAVDLPKKKF 2135
SQEDLMKIE RL+DVKQIL ILEKHFA+ LPKK F
Sbjct: 301 NSQEDLMKIEDFRLQDVKQILGILEKHFAIGLPKKNF 337
>ref|YP_009115927.1| RNA polymerase alpha subunit [Scrophularia takesimensis]
gi|744673771|gb|AJD00756.1| RNA polymerase alpha subunit
[Scrophularia takesimensis]
Length = 335
Score = 598 bits (1541), Expect = e-168
Identities = 301/337 (89%), Positives = 306/337 (90%)
Frame = +3
Query: 1125 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1304
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1305 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1484
CITR+K ENV HEYSTI GIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CITRVKSENVSHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 1485 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1664
IILPPYVEIVDNTQHIASLTEPI+LCIGL+IERNRGY KMPHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINLCIGLEIERNRGYFFKMPHNFQDGSYPIDAVFMPVR 180
Query: 1665 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1844
N NHSIHSYGN NEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLHKEEENLPLE
Sbjct: 181 NVNHSIHSYGNENEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLE 240
Query: 1845 DNQHTVPLSPLTFHDXXXXXXXXXXXXXXXSIFIDQSELSPRVYNCLKRSNIYTLLDLLN 2024
DNQHTV LSP FHD SIFIDQSELSPRVYNCLKRSNI TLLDLLN
Sbjct: 241 DNQHTVSLSPFYFHD--KFDKLRKKKIALKSIFIDQSELSPRVYNCLKRSNIDTLLDLLN 298
Query: 2025 KSQEDLMKIEHLRLEDVKQILVILEKHFAVDLPKKKF 2135
KSQEDLMKI+H LEDVKQIL ILEKHFA+DLPKKKF
Sbjct: 299 KSQEDLMKIDHFHLEDVKQILGILEKHFAIDLPKKKF 335
>ref|YP_009041119.1| RNA polymerase alpha subunit [Rhazya stricta]
gi|608608813|gb|AHW52216.1| RNA polymerase alpha subunit
(chloroplast) [Rhazya stricta]
gi|645929242|gb|AIB08766.1| RNA polymerase alpha subunit
[Rhazya stricta]
Length = 337
Score = 595 bits (1534), Expect = e-167
Identities = 294/337 (87%), Positives = 304/337 (90%)
Frame = +3
Query: 1125 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1304
MVREK+TVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKITVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1305 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1484
CITR+K E VPHEYSTI GIQESVHEILMNLKEIVLRSNLYGTC+ASICV+GPGYVTAQD
Sbjct: 61 CITRVKFEKVPHEYSTIKGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGYVTAQD 120
Query: 1485 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1664
I+LPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIK P NFQDGSYPIDAVFMPVR
Sbjct: 121 IVLPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKTPQNFQDGSYPIDAVFMPVR 180
Query: 1665 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1844
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLH EEEN LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENSHLE 240
Query: 1845 DNQHTVPLSPLTFHDXXXXXXXXXXXXXXXSIFIDQSELSPRVYNCLKRSNIYTLLDLLN 2024
+NQH VPLSP TFHD SIFIDQSEL PR+YNCLKRSNIYTLLDLLN
Sbjct: 241 NNQHAVPLSPFTFHDKLAKLIKKKKEIALKSIFIDQSELPPRIYNCLKRSNIYTLLDLLN 300
Query: 2025 KSQEDLMKIEHLRLEDVKQILVILEKHFAVDLPKKKF 2135
KSQEDLMKIEH R+EDVKQILV+LEKH + LPK KF
Sbjct: 301 KSQEDLMKIEHFRIEDVKQILVVLEKHLEIFLPKNKF 337
>gb|ADD31214.1| RNA polymerase alpha subunit protein (chloroplast) [Ehretia
acuminata]
Length = 339
Score = 594 bits (1532), Expect = e-167
Identities = 299/339 (88%), Positives = 306/339 (90%), Gaps = 2/339 (0%)
Frame = +3
Query: 1125 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1304
MVREKV VSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVIVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1305 CITRIKLEN--VPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTA 1478
ITR+K E+ VPHEYSTI+GIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTA
Sbjct: 61 SITRVKSESEKVPHEYSTISGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTA 120
Query: 1479 QDIILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMP 1658
QDIILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIK PHNFQDGSYPIDAVFMP
Sbjct: 121 QDIILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMP 180
Query: 1659 VRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLP 1838
VRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLH EEEN+
Sbjct: 181 VRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENVH 240
Query: 1839 LEDNQHTVPLSPLTFHDXXXXXXXXXXXXXXXSIFIDQSELSPRVYNCLKRSNIYTLLDL 2018
LEDNQHTVPLSP FHD SIFIDQSEL PR+YNCLKRSNIYTLLDL
Sbjct: 241 LEDNQHTVPLSPFIFHDKLAKLRKKKKKIALKSIFIDQSELPPRIYNCLKRSNIYTLLDL 300
Query: 2019 LNKSQEDLMKIEHLRLEDVKQILVILEKHFAVDLPKKKF 2135
LN SQEDLMKIEH R+EDVKQIL ILEKHFA+DL K KF
Sbjct: 301 LNNSQEDLMKIEHFRIEDVKQILGILEKHFAIDLSKSKF 339
>gb|ADD31215.1| RNA polymerase alpha subunit protein (chloroplast) [Ilex cornuta]
Length = 337
Score = 593 bits (1530), Expect = e-166
Identities = 294/337 (87%), Positives = 301/337 (89%)
Frame = +3
Query: 1125 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1304
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1305 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1484
CITR K E +PHEYSTI GIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVT QD
Sbjct: 61 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTTQD 120
Query: 1485 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1664
IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIK P+NFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKTPNNFQDGSYPIDAVFMPVR 180
Query: 1665 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1844
NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLH EEENL LE
Sbjct: 181 NANHSIHSYRNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLE 240
Query: 1845 DNQHTVPLSPLTFHDXXXXXXXXXXXXXXXSIFIDQSELSPRVYNCLKRSNIYTLLDLLN 2024
DNQHT+PL P FHD SIFIDQ EL PR+YNCLKRSNIYTLLDLLN
Sbjct: 241 DNQHTIPLPPFNFHDKLAKLRKNKKKIALKSIFIDQLELPPRIYNCLKRSNIYTLLDLLN 300
Query: 2025 KSQEDLMKIEHLRLEDVKQILVILEKHFAVDLPKKKF 2135
QEDLMKIEH R+EDVKQIL +LEKHFA+DLPK KF
Sbjct: 301 NVQEDLMKIEHFRIEDVKQILGVLEKHFAIDLPKNKF 337
>ref|YP_538881.1| RNA polymerase alpha subunit [Solanum bulbocastanum]
gi|108773161|ref|YP_635671.1| RNA polymerase alpha
subunit [Solanum tuberosum]
gi|565356831|ref|XP_006345266.1| PREDICTED: DNA-directed
RNA polymerase subunit alpha-like [Solanum tuberosum]
gi|90110868|sp|Q2VEE8.1|RPOA_SOLTU RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|109900624|sp|Q2MIF6.1|RPOA_SOLBU RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
(chloroplast) [Solanum bulbocastanum]
gi|82754657|gb|ABB90071.1| RNA polymerase alpha chain
[Solanum tuberosum] gi|84371926|gb|ABC56244.1| RNA
polymerase alpha subunit [Solanum bulbocastanum]
gi|88656835|gb|ABD47088.1| RNA polymerase alpha subunit
[Solanum tuberosum] gi|329124614|gb|AEB72171.1| RNA
polymerase alpha subunit (chloroplast) [Solanum
tuberosum] gi|329124701|gb|AEB72257.1| RNA polymerase
alpha subunit (chloroplast) [Solanum tuberosum]
Length = 337
Score = 588 bits (1515), Expect = e-165
Identities = 292/337 (86%), Positives = 302/337 (89%)
Frame = +3
Query: 1125 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1304
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1305 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1484
CITR+K E VPHEYSTI GIQESVHEILMNLKEIVLRSNLYGT DASICV+GPGYVTAQD
Sbjct: 61 CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQD 120
Query: 1485 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1664
IILPPYVEIVDNTQHIASLTEPID CIGLQIERNRGYLIK PHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180
Query: 1665 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1844
NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEALH+A RNLIDLFIPFLH EE+NL L+
Sbjct: 181 NANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQ 240
Query: 1845 DNQHTVPLSPLTFHDXXXXXXXXXXXXXXXSIFIDQSELSPRVYNCLKRSNIYTLLDLLN 2024
DNQHTVPLSP TFHD SIFIDQSELS R+YNCLK SNIYTLLDLLN
Sbjct: 241 DNQHTVPLSPFTFHDKLAKLIKNKKKIALKSIFIDQSELSSRIYNCLKMSNIYTLLDLLN 300
Query: 2025 KSQEDLMKIEHLRLEDVKQILVILEKHFAVDLPKKKF 2135
SQEDLMKIEH R ED+KQIL ILEK+F +DL K KF
Sbjct: 301 NSQEDLMKIEHFRSEDIKQILGILEKYFVIDLAKNKF 337
>ref|YP_008563120.1| RNA polymerase alpha subunit (chloroplast) [Solanum lycopersicum]
gi|813424048|ref|YP_009131744.1| RNA polymerase alpha
subunit (chloroplast) [Solanum cheesmaniae]
gi|813424153|ref|YP_009131993.1| RNA polymerase alpha
subunit (chloroplast) [Solanum habrochaites]
gi|813559439|ref|YP_009131827.1| RNA polymerase alpha
subunit (chloroplast) [Solanum chilense]
gi|813559523|ref|YP_009131910.1| RNA polymerase alpha
subunit (chloroplast) [Solanum galapagense]
gi|813559607|ref|YP_009132159.1| RNA polymerase alpha
subunit (chloroplast) [Solanum peruvianum]
gi|813559691|ref|YP_009132242.1| RNA polymerase alpha
subunit (chloroplast) [Solanum pimpinellifolium]
gi|544170704|ref|AP_004960.1| RNA polymerase alpha chain
(chloroplast) [Solanum lycopersicum]
gi|109900622|sp|Q2MI69.1|RPOA_SOLLC RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|84372014|gb|ABC56331.1| RNA polymerase alpha subunit
(chloroplast) [Solanum lycopersicum]
gi|89241703|emb|CAJ32426.1| RNA polymerase alpha chain
[Solanum lycopersicum] gi|757813377|gb|AJO25142.1| RNA
polymerase alpha subunit (chloroplast) [Solanum
lycopersicum] gi|779776248|gb|AJY78722.1| RNA polymerase
alpha subunit (chloroplast) [Solanum cheesmaniae]
gi|779776337|gb|AJY78805.1| RNA polymerase alpha subunit
(chloroplast) [Solanum chilense]
gi|779776427|gb|AJY78888.1| RNA polymerase alpha subunit
(chloroplast) [Solanum galapagense]
gi|779776518|gb|AJY78971.1| RNA polymerase alpha subunit
(chloroplast) [Solanum habrochaites]
gi|779776608|gb|AJY79054.1| RNA polymerase alpha subunit
(chloroplast) [Solanum lycopersicum]
gi|779776789|gb|AJY79220.1| RNA polymerase alpha subunit
(chloroplast) [Solanum peruvianum]
gi|779776879|gb|AJY79303.1| RNA polymerase alpha subunit
(chloroplast) [Solanum pimpinellifolium]
Length = 337
Score = 586 bits (1511), Expect = e-164
Identities = 291/337 (86%), Positives = 302/337 (89%)
Frame = +3
Query: 1125 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1304
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1305 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1484
CITR+K E VPHEYSTI GIQESVHEILMNLKEIVLRSNLYGT +ASICV+GPGYVTAQD
Sbjct: 61 CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSEASICVKGPGYVTAQD 120
Query: 1485 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1664
IILPPYVEIVDNTQHIASLTEPID CIGLQIERNRGYLIK PHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180
Query: 1665 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1844
NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEALH+A RNLIDLFIPFLH EE+NL L+
Sbjct: 181 NANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQ 240
Query: 1845 DNQHTVPLSPLTFHDXXXXXXXXXXXXXXXSIFIDQSELSPRVYNCLKRSNIYTLLDLLN 2024
DNQHTVPLSP TFHD SIFIDQSELS R+YNCLK SNIYTLLDLLN
Sbjct: 241 DNQHTVPLSPFTFHDKLAKLIKNKKKIALKSIFIDQSELSSRIYNCLKMSNIYTLLDLLN 300
Query: 2025 KSQEDLMKIEHLRLEDVKQILVILEKHFAVDLPKKKF 2135
SQEDLMKIEH R ED+KQIL ILEK+F +DL K KF
Sbjct: 301 NSQEDLMKIEHFRSEDIKQILDILEKYFVIDLAKNKF 337
>ref|YP_009132076.1| RNA polymerase alpha subunit (chloroplast) [Solanum neorickii]
gi|779776699|gb|AJY79137.1| RNA polymerase alpha subunit
(chloroplast) [Solanum neorickii]
Length = 337
Score = 586 bits (1510), Expect = e-164
Identities = 290/337 (86%), Positives = 302/337 (89%)
Frame = +3
Query: 1125 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1304
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1305 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1484
CITR+K E VPHEYSTI GIQESVHEILMNLKE+VLRSNLYGT +ASICV+GPGYVTAQD
Sbjct: 61 CITRVKSEKVPHEYSTITGIQESVHEILMNLKEVVLRSNLYGTSEASICVKGPGYVTAQD 120
Query: 1485 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1664
IILPPYVEIVDNTQHIASLTEPID CIGLQIERNRGYLIK PHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180
Query: 1665 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1844
NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEALH+A RNLIDLFIPFLH EE+NL L+
Sbjct: 181 NANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQ 240
Query: 1845 DNQHTVPLSPLTFHDXXXXXXXXXXXXXXXSIFIDQSELSPRVYNCLKRSNIYTLLDLLN 2024
DNQHTVPLSP TFHD SIFIDQSELS R+YNCLK SNIYTLLDLLN
Sbjct: 241 DNQHTVPLSPFTFHDKLAKLIKNKKKIALKSIFIDQSELSSRIYNCLKMSNIYTLLDLLN 300
Query: 2025 KSQEDLMKIEHLRLEDVKQILVILEKHFAVDLPKKKF 2135
SQEDLMKIEH R ED+KQIL ILEK+F +DL K KF
Sbjct: 301 NSQEDLMKIEHFRSEDIKQILDILEKYFVIDLAKNKF 337
>gb|AIW05465.1| RNA polymerase alpha subunit [Neobracea bahamensis]
Length = 337
Score = 585 bits (1509), Expect = e-164
Identities = 289/337 (85%), Positives = 301/337 (89%)
Frame = +3
Query: 1125 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1304
MVREK+TVSTRTLQWKCVESR +SKRLYYGRFILSPL+KGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKITVSTRTLQWKCVESRTESKRLYYGRFILSPLLKGQADTIGIAMRRALLGEIEGT 60
Query: 1305 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1484
CITR+K + VPHEYSTI GIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61 CITRVKFDKVPHEYSTIKGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 1485 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1664
I+LPPYVEIVDNTQHIASLTEPI LCIGLQIERNRGYLI+ P NFQDGSYPIDAVFMPVR
Sbjct: 121 IVLPPYVEIVDNTQHIASLTEPIHLCIGLQIERNRGYLIQTPQNFQDGSYPIDAVFMPVR 180
Query: 1665 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1844
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLH EEEN LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENSHLE 240
Query: 1845 DNQHTVPLSPLTFHDXXXXXXXXXXXXXXXSIFIDQSELSPRVYNCLKRSNIYTLLDLLN 2024
+NQH VPL P TFHD SIFIDQ EL PR+YNCLKRSNIYTLLDLLN
Sbjct: 241 NNQHVVPLFPFTFHDKLNKLIKKKKEIALKSIFIDQLELPPRIYNCLKRSNIYTLLDLLN 300
Query: 2025 KSQEDLMKIEHLRLEDVKQILVILEKHFAVDLPKKKF 2135
SQEDLMKIEH R+EDVKQILV+LEKH A+ LPK KF
Sbjct: 301 NSQEDLMKIEHFRIEDVKQILVVLEKHLAIFLPKNKF 337
>ref|YP_009128212.1| RNA polymerase alpha subunit (chloroplast) [Saracha punctata]
gi|772657870|ref|YP_009128870.1| RNA polymerase alpha
subunit (chloroplast) [Iochroma loxense]
gi|788229498|ref|YP_009123663.1| RNA polymerase alpha
subunit (chloroplast) [Iochroma stenanthum]
gi|788512410|ref|YP_009123188.1| RNA polymerase alpha
subunit (chloroplast) [Dunalia obovata]
gi|803360269|ref|YP_009123382.1| RNA polymerase alpha
subunit (chloroplast) [Iochroma nitidum]
gi|813559832|ref|YP_009132783.1| RNA polymerase alpha
subunit (chloroplast) [Dunalia brachyacantha]
gi|821318364|ref|YP_009139499.1| RNA polymerase alpha
subunit (chloroplast) [Dunalia solanacea]
gi|827046045|ref|YP_009142357.1| RNA polymerase alpha
subunit (chloroplast) [Iochroma tingoanum]
gi|756419301|gb|AJL34440.1| RNA polymerase alpha subunit
(chloroplast) [Dunalia obovata]
gi|756762019|gb|AJM70131.1| RNA polymerase alpha subunit
(chloroplast) [Iochroma nitidum]
gi|757173743|gb|AJN90537.1| RNA polymerase alpha subunit
(chloroplast) [Iochroma stenanthum]
gi|758185536|gb|AJO61611.1| RNA polymerase alpha subunit
(chloroplast) [Saracha punctata]
gi|765365581|gb|AJR30409.1| RNA polymerase alpha subunit
(chloroplast) [Vassobia breviflora]
gi|766544031|gb|AJS14284.1| RNA polymerase alpha subunit
(chloroplast) [Iochroma loxense]
gi|766544117|gb|AJS14368.1| RNA polymerase alpha subunit
(chloroplast) [Iochroma calycinum]
gi|770591288|gb|AJW75080.1| ribosomal protein L16
(chloroplast) [Vassobia dichotoma]
gi|800876083|gb|AKA66563.1| RNA polymerase alpha subunit
(chloroplast) [Dunalia brachyacantha]
gi|817597882|gb|AKF78442.1| RNA polymerase alpha subunit
(chloroplast) [Dunalia solanacea]
gi|820957844|gb|AKH02349.1| RNA polymerase alpha subunit
(chloroplast) [Iochroma tingoanum]
Length = 337
Score = 585 bits (1508), Expect = e-164
Identities = 291/337 (86%), Positives = 300/337 (89%)
Frame = +3
Query: 1125 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1304
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1305 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1484
CITR+K E VPHEYSTI GIQESVHEILMNLKEIVLRSNLYGT DASICV+GPGYVTAQD
Sbjct: 61 CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQD 120
Query: 1485 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1664
IILPPYVE VDNTQHIASLTEPID CIGLQIERNRGYLIK PHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVETVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180
Query: 1665 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1844
NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEALHEA RNLIDLFIPFLH EE+NL L+
Sbjct: 181 NANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQ 240
Query: 1845 DNQHTVPLSPLTFHDXXXXXXXXXXXXXXXSIFIDQSELSPRVYNCLKRSNIYTLLDLLN 2024
DNQHTVPLSP TFHD SIFIDQSEL R+YNCLK SNIYTLLDLLN
Sbjct: 241 DNQHTVPLSPFTFHDKLAKLIKKKKKIALKSIFIDQSELPSRIYNCLKMSNIYTLLDLLN 300
Query: 2025 KSQEDLMKIEHLRLEDVKQILVILEKHFAVDLPKKKF 2135
SQEDLMKIEH R ED+KQIL ILEK+F +DL K KF
Sbjct: 301 NSQEDLMKIEHFRSEDIKQILGILEKYFVIDLAKNKF 337
>ref|YP_009123556.1| RNA polymerase alpha subunit (plastid) [Physalis peruviana]
gi|757173522|gb|AJN90337.1| RNA polymerase alpha subunit
[Physalis peruviana]
Length = 337
Score = 584 bits (1505), Expect = e-163
Identities = 291/337 (86%), Positives = 300/337 (89%)
Frame = +3
Query: 1125 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1304
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1305 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1484
CITR+K E VPHEYSTI GIQESVHEILMNLKEIVLRSNLYGT DASI V+GPGYVTAQD
Sbjct: 61 CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASIYVKGPGYVTAQD 120
Query: 1485 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1664
IILPPYVE VDNTQHIASLTEPID CIGLQIERNRGYLIK PHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVETVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180
Query: 1665 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1844
NANHSIHSYGNGNEKQEILF+EIWTNGSLTPKEALHEA RNLIDLFIPFLH EE+NL L+
Sbjct: 181 NANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQ 240
Query: 1845 DNQHTVPLSPLTFHDXXXXXXXXXXXXXXXSIFIDQSELSPRVYNCLKRSNIYTLLDLLN 2024
DNQHTVPLSP TFHD SIFIDQSEL R+YNCLK SNIYTLLDLLN
Sbjct: 241 DNQHTVPLSPFTFHDKLAKLIKIKKKIALKSIFIDQSELPSRIYNCLKMSNIYTLLDLLN 300
Query: 2025 KSQEDLMKIEHLRLEDVKQILVILEKHFAVDLPKKKF 2135
SQEDLMKIEH R ED+KQIL ILEK+F +DLPK KF
Sbjct: 301 NSQEDLMKIEHFRSEDIKQILGILEKYFVIDLPKNKF 337
>ref|YP_004891639.1| rpoA gene product (chloroplast) [Nicotiana undulata]
gi|347453943|gb|AEO95601.1| RNA polymerase alpha subunit
(chloroplast) [Nicotiana undulata]
gi|347454054|gb|AEO95711.1| RNA polymerase alpha subunit
[synthetic construct]
Length = 337
Score = 583 bits (1504), Expect = e-163
Identities = 292/337 (86%), Positives = 300/337 (89%)
Frame = +3
Query: 1125 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 1304
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 1305 CITRIKLENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 1484
CITR+K E VPHEYSTI GIQESVHEILMNLKEIVLRSNLYGT DASICV+GPGYVTAQD
Sbjct: 61 CITRVKSEKVPHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQD 120
Query: 1485 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 1664
IILPP+VEIVDNTQHIASLTEPID CIGLQIERNRGYLIK PHNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPFVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180
Query: 1665 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 1844
NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLH EE+NL L+
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQ 240
Query: 1845 DNQHTVPLSPLTFHDXXXXXXXXXXXXXXXSIFIDQSELSPRVYNCLKRSNIYTLLDLLN 2024
DNQHTVPLSP T HD SIFIDQSEL R+YNCLK SNIYTLLDLLN
Sbjct: 241 DNQHTVPLSPFTVHDKLAKLIKNKKKIALKSIFIDQSELPSRIYNCLKMSNIYTLLDLLN 300
Query: 2025 KSQEDLMKIEHLRLEDVKQILVILEKHFAVDLPKKKF 2135
SQEDLMKIEH R EDVKQIL ILEK+F +DL K KF
Sbjct: 301 NSQEDLMKIEHFRSEDVKQILGILEKYFVIDLAKNKF 337