BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Forsythia21_contig00004597
         (1729 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFB73912.1| polyprotein [Citrus sinensis]                          939   0.0  
gb|AFB73911.1| polyprotein [Citrus sinensis]                          932   0.0  
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  796   0.0  
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              795   0.0  
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              789   0.0  
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              788   0.0  
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                             785   0.0  
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              784   0.0  
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     449   e-123
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     449   e-123
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   449   e-123
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   449   e-123
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v...   447   e-123
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     441   e-121
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]         434   e-118
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]           432   e-118
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   429   e-117
emb|CAN71109.1| hypothetical protein VITISV_001479 [Vitis vinifera]   425   e-116
emb|CAN69340.1| hypothetical protein VITISV_032634 [Vitis vinifera]   424   e-115
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   419   e-114

>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  939 bits (2428), Expect = 0.0
 Identities = 464/580 (80%), Positives = 508/580 (87%), Gaps = 4/580 (0%)
 Frame = +1

Query: 1    EVLYGEASIVAEDRKRLANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIA 180
            E+LY EA+IV+E RKRL++VWLIDSGATWHMTSRREWFH YEPIS GSVYMG+DH LEIA
Sbjct: 272  EILYSEATIVSEGRKRLSDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIA 331

Query: 181  GIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSWGQLDDLGCEICSKNGIMKIVRGALVLM 360
            GIGTIKIKMFDGT+RTI+EVRHV GL+KNLLS GQ+D  GC+   +NGIMKIV+GALVLM
Sbjct: 332  GIGTIKIKMFDGTIRTIEEVRHVNGLKKNLLSLGQMDSHGCKTHVENGIMKIVKGALVLM 391

Query: 361  QAEKIGPKLFMLKGETIQEADACVASTSKGEESAMMWHLKLGHMSEQGLKILSDRKLLPG 540
            +AEKI   LFMLKGET+QEADACVAS   GEES MMWHLKLGHMSEQGLKILS+RKL PG
Sbjct: 392  KAEKICANLFMLKGETLQEADACVASN--GEESTMMWHLKLGHMSEQGLKILSERKLPPG 449

Query: 541  LKSVNLPFCEYCVTSKQHRLKFGRSGARSKYILDLIHSDVWESPDTSVGGAKYFVSFIDD 720
            LKSV+LPFCE+CVTSKQHRLKF RS ARSK ILDLIHSDVWESPD S+GGAKY V+FIDD
Sbjct: 450  LKSVSLPFCEHCVTSKQHRLKFSRSIARSKCILDLIHSDVWESPDISMGGAKYMVTFIDD 509

Query: 721  YSRRCWMYPIKRKSDVFPVFKEYKARVELESGKRIKCLRTDNGGEYTDDDFLAFCK*KSI 900
            YSRRCW+YPIK+KSDVFPVFKEYKA VELESGK+IKCLRTDNGGEYTD +FLAFCK + I
Sbjct: 510  YSRRCWVYPIKKKSDVFPVFKEYKAWVELESGKKIKCLRTDNGGEYTDSEFLAFCKQEGI 569

Query: 901  DR*FTVAYTPQQNRVAERMNRTLTENIRAMLRTADLPNSFWAEAAN----VINCSPSTAI 1068
             R FTVAYTPQQN VAERMNRTLTE IRAMLRTA LPNSFWAEAA     ++N SPSTAI
Sbjct: 570  QRQFTVAYTPQQNGVAERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNRSPSTAI 629

Query: 1069 ELKTPMEIWTGKPADYSRLHSFGCPVYVMYNTQERTKLDPKSRRCIFLGYADGVKGYRLW 1248
             LKT ME+WTGKPADYS LH+FGCPVYVMYN QERTKLDPKSR+CIFLGYADGVKGYRLW
Sbjct: 630  GLKTAMEMWTGKPADYSYLHAFGCPVYVMYNAQERTKLDPKSRKCIFLGYADGVKGYRLW 689

Query: 1249 DSTTHRVIVSRDVVFVDDQLQRKRTDENDSTTKERPETTTVQVENGPINEDLVSSEVAPE 1428
            D T H++++SRDV+FV+DQLQRK  D +D T KE+ ET  V VEN P N D  SSE APE
Sbjct: 690  DPTAHKIVISRDVIFVEDQLQRK--DGDDGTVKEKSETVPVYVENNPENSD--SSEAAPE 745

Query: 1429 HEVQGPVESEAPEVRRSTRERRPPAWHSEYDTESNIAYCLLTEDGEPSTFHEAVSSSNAT 1608
            HE Q PVESEAPEVRRSTRERRPP WHSEY TE N+AYCLLTEDGEPSTFHEA++S +  
Sbjct: 746  HEEQEPVESEAPEVRRSTRERRPPTWHSEYVTEINVAYCLLTEDGEPSTFHEALNSLDVA 805

Query: 1609 L*MTTMHEEIEALYKNKTWQLVPLPHGRKAIGNKWVYKIK 1728
            L MT M EEIEAL+KNKTW+LVPLPHGRKAIGNKWVYKIK
Sbjct: 806  LWMTAMQEEIEALHKNKTWELVPLPHGRKAIGNKWVYKIK 845


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  932 bits (2409), Expect = 0.0
 Identities = 462/580 (79%), Positives = 505/580 (87%), Gaps = 4/580 (0%)
 Frame = +1

Query: 1    EVLYGEASIVAEDRKRLANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIA 180
            E+LY EA+ V+E RKRL++VWLIDSGATWHMTSRREWFH YEPIS GSVYMG+DH LEIA
Sbjct: 272  EILYSEATTVSEGRKRLSDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIA 331

Query: 181  GIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSWGQLDDLGCEICSKNGIMKIVRGALVLM 360
            GIGTIKIKMFDGT+RTI EVRHV GL+KNLLS GQ+D  G +   +NGIMKIV+GALVLM
Sbjct: 332  GIGTIKIKMFDGTIRTIGEVRHVNGLKKNLLSLGQMDSHGYKTHVENGIMKIVKGALVLM 391

Query: 361  QAEKIGPKLFMLKGETIQEADACVASTSKGEESAMMWHLKLGHMSEQGLKILSDRKLLPG 540
            + EKIG  LFMLKGET+QEADACVAS   GEES MMWHLKLGHMSEQGLKILS+RKLLPG
Sbjct: 392  KVEKIGANLFMLKGETLQEADACVASN--GEESTMMWHLKLGHMSEQGLKILSERKLLPG 449

Query: 541  LKSVNLPFCEYCVTSKQHRLKFGRSGARSKYILDLIHSDVWESPDTSVGGAKYFVSFIDD 720
            LKSV+LPFCE+CVTSKQHRLKF RS ARSK ILDLIHSDVWESPD S+GGAKY V+FIDD
Sbjct: 450  LKSVSLPFCEHCVTSKQHRLKFSRSIARSKCILDLIHSDVWESPDISMGGAKYMVTFIDD 509

Query: 721  YSRRCWMYPIKRKSDVFPVFKEYKARVELESGKRIKCLRTDNGGEYTDDDFLAFCK*KSI 900
            YSRRCW+YPIK+KSDVFPVFKEYKA VELESGK+IKCLRTDNGGEYTD +FLAFCK + I
Sbjct: 510  YSRRCWVYPIKKKSDVFPVFKEYKAWVELESGKKIKCLRTDNGGEYTDGEFLAFCKQEGI 569

Query: 901  DR*FTVAYTPQQNRVAERMNRTLTENIRAMLRTADLPNSFWAEAAN----VINCSPSTAI 1068
             R FTVAYTPQQN VAERMNRTLTE IRAMLRTA LPNSFWAEAA     ++N SPSTAI
Sbjct: 570  QRQFTVAYTPQQNGVAERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNRSPSTAI 629

Query: 1069 ELKTPMEIWTGKPADYSRLHSFGCPVYVMYNTQERTKLDPKSRRCIFLGYADGVKGYRLW 1248
             LKT ME+WTGKPADYS LH+FGCP+YVMYN QERTKLD KSRRCIFLGYADGVKGYRLW
Sbjct: 630  GLKTAMEMWTGKPADYSYLHAFGCPMYVMYNAQERTKLDAKSRRCIFLGYADGVKGYRLW 689

Query: 1249 DSTTHRVIVSRDVVFVDDQLQRKRTDENDSTTKERPETTTVQVENGPINEDLVSSEVAPE 1428
            D T H++++SRDV+FV+DQLQRK  D +D T KE+ ET  V VEN P N D  SSE APE
Sbjct: 690  DPTAHKIVISRDVIFVEDQLQRK--DGDDGTVKEKSETVPVYVENNPENSD--SSEAAPE 745

Query: 1429 HEVQGPVESEAPEVRRSTRERRPPAWHSEYDTESNIAYCLLTEDGEPSTFHEAVSSSNAT 1608
            HE Q PVESEAPEVRRSTRERRPP WHSEY TE N+AYCLLTEDGEPSTFHEA++SS+  
Sbjct: 746  HEEQEPVESEAPEVRRSTRERRPPTWHSEYVTEINVAYCLLTEDGEPSTFHEALNSSDVA 805

Query: 1609 L*MTTMHEEIEALYKNKTWQLVPLPHGRKAIGNKWVYKIK 1728
            L MT M EEIEAL+KNKTW+LVPLP GRKAIGNKWVYKIK
Sbjct: 806  LWMTAMQEEIEALHKNKTWELVPLPRGRKAIGNKWVYKIK 845


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  796 bits (2057), Expect = 0.0
 Identities = 394/580 (67%), Positives = 472/580 (81%), Gaps = 4/580 (0%)
 Frame = +1

Query: 1    EVLYGEASIVAEDRKRLANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIA 180
            EVLY EA++  + + RL +VW++DSGATWHMT RR+WF  YEP+SEG+V+MG+DH LEI 
Sbjct: 271  EVLYSEAAVSTKGKNRLTDVWIVDSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIV 330

Query: 181  GIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSWGQLDDLGCEICSKNGIMKIVRGALVLM 360
            GIGT+KIKM+DGT+RT+QEVRHVK L KNLLS GQLDDLG +   + GI+K+V+G+LV+M
Sbjct: 331  GIGTVKIKMYDGTIRTLQEVRHVKELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVM 390

Query: 361  QAEKIGPKLFMLKGETIQEADACVASTSKGEESAMMWHLKLGHMSEQGLKILSDRKLLPG 540
            +A+K+   L+ML G+T Q ADA VA  S+ EE+ MMWH +LGHMSE+GLK+L++R L+PG
Sbjct: 391  KAKKVAANLYMLLGDTWQMADASVAVGSQ-EETTMMWHRRLGHMSERGLKVLAERNLIPG 449

Query: 541  LKSVNLPFCEYCVTSKQHRLKFGRSGARSKYILDLIHSDVWESPDTSVGGAKYFVSFIDD 720
            LKSV+LPFCE+CV SKQHRLKF +S ARSK+ILDLIHSDVWESP+ S+GGAKYFVSFIDD
Sbjct: 450  LKSVSLPFCEHCVISKQHRLKFAKSTARSKHILDLIHSDVWESPEVSIGGAKYFVSFIDD 509

Query: 721  YSRRCWMYPIKRKSDVFPVFKEYKARVELESGKRIKCLRTDNGGEYTDDDFLAFCK*KSI 900
            YSRR W+YPIK+KS V+ VFKE+KA+VELE+GKRIKCLRTDNGGEYTD DFLAFCK + I
Sbjct: 510  YSRRLWVYPIKKKSGVYSVFKEFKAQVELETGKRIKCLRTDNGGEYTDGDFLAFCKQEGI 569

Query: 901  DR*FTVAYTPQQNRVAERMNRTLTENIRAMLRTADLPNSFWAEAAN----VINCSPSTAI 1068
             R FTVA+TPQQN VAERMNRTL E  RAML+TA L  SFWAEAA     VIN SPSTAI
Sbjct: 570  TRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGLAKSFWAEAAKTACYVINRSPSTAI 629

Query: 1069 ELKTPMEIWTGKPADYSRLHSFGCPVYVMYNTQERTKLDPKSRRCIFLGYADGVKGYRLW 1248
             LKTPME+W GKP DYS L  FGCPVYVMYN+QERTKLDPKSRRC FLGYAD VKGYRLW
Sbjct: 630  GLKTPMEMWKGKPGDYSSLRVFGCPVYVMYNSQERTKLDPKSRRCTFLGYADNVKGYRLW 689

Query: 1249 DSTTHRVIVSRDVVFVDDQLQRKRTDENDSTTKERPETTTVQVENGPINEDLVSSEVAPE 1428
            D T  ++ VSRDV+FV+++LQ+++  +ND TTK   ET TV++E     E   +SE  PE
Sbjct: 690  DPTARKIFVSRDVIFVENELQKEQ--KNDGTTK---ETATVEIEEKSGEE---NSEAEPE 741

Query: 1429 HEVQGPVESEAPEVRRSTRERRPPAWHSEYDTESNIAYCLLTEDGEPSTFHEAVSSSNAT 1608
            HE Q P E    E RR+TR+ R P+WHSEY   S+ AYCLL+EDGEPSTFHEAV+ S+A+
Sbjct: 742  HEEQEPNEVNDAEPRRTTRQIRKPSWHSEYVMASHDAYCLLSEDGEPSTFHEAVNGSDAS 801

Query: 1609 L*MTTMHEEIEALYKNKTWQLVPLPHGRKAIGNKWVYKIK 1728
            L M  M EEIEAL++N TW+LV LP GRKAIGNKWV+KIK
Sbjct: 802  LWMAAMQEEIEALHRNNTWELVELPKGRKAIGNKWVFKIK 841


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  795 bits (2052), Expect = 0.0
 Identities = 394/580 (67%), Positives = 474/580 (81%), Gaps = 4/580 (0%)
 Frame = +1

Query: 1    EVLYGEASIVAEDRKRLANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIA 180
            E+LY EA+  ++  +RL +VW++DSGATWHMT  R+WF  YEPISEGSVYMG+DH LEIA
Sbjct: 271  EILYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIA 330

Query: 181  GIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSWGQLDDLGCEICSKNGIMKIVRGALVLM 360
            G+GTI++KM DGTVR IQ VRHVKGL+KNLLS GQLDDLGC+I +++GI+K+V+G LV+M
Sbjct: 331  GVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVM 390

Query: 361  QAEKIGPKLFMLKGETIQEADACVASTSKGEESAMMWHLKLGHMSEQGLKILSDRKLLPG 540
            +AEKI   L+ML G+T+QEADA VA+ S+ EE+ MMWH +LGHMSE+GLK+L +R LL G
Sbjct: 391  KAEKITSNLYMLLGDTLQEADASVAAASQ-EETTMMWHQRLGHMSERGLKVLVERNLLHG 449

Query: 541  LKSVNLPFCEYCVTSKQHRLKFGRSGARSKYILDLIHSDVWESPDTSVGGAKYFVSFIDD 720
            LK+VNLPFCE+CV SKQHRLKF R   RSK+ILDLIHSDVWESP+ S+GGA+YFVSFIDD
Sbjct: 450  LKTVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVWESPELSLGGARYFVSFIDD 509

Query: 721  YSRRCWMYPIKRKSDVFPVFKEYKARVELESGKRIKCLRTDNGGEYTDDDFLAFCK*KSI 900
            YSRR W+YPIK+KSDVFPVFK +KA++ELE+GK+IKCLRTDNGGEY D +FLAFCK + I
Sbjct: 510  YSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGI 569

Query: 901  DR*FTVAYTPQQNRVAERMNRTLTENIRAMLRTADLPNSFWAEAAN----VINCSPSTAI 1068
             R FTVA+TPQQN VAERMNRTL E  RAML+TA +  SFWAEA      VIN SPSTAI
Sbjct: 570  VRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAI 629

Query: 1069 ELKTPMEIWTGKPADYSRLHSFGCPVYVMYNTQERTKLDPKSRRCIFLGYADGVKGYRLW 1248
            +LKTPME+W GKP DYS LH FGCPVYVMYN+QERTKLDPKSR+CIFLGYAD VKGYRLW
Sbjct: 630  DLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLW 689

Query: 1249 DSTTHRVIVSRDVVFVDDQLQRKRTDENDSTTKERPETTTVQVENGPINEDLVSSEVAPE 1428
            D T  +V+VSRDVVF +++LQ K+  +NDST+K   ET  VQ+E      D  SSE  P 
Sbjct: 690  DPTARKVVVSRDVVFAENELQSKQ--KNDSTSK---ETAIVQMEEKSKESD--SSEAEPV 742

Query: 1429 HEVQGPVESEAPEVRRSTRERRPPAWHSEYDTESNIAYCLLTEDGEPSTFHEAVSSSNAT 1608
            HE Q P +     VRRSTR+ + P+W S+Y   S+ AYCL+TE+GEPSTFHEA++ S+A+
Sbjct: 743  HEEQEP-DDVNNGVRRSTRQTQKPSWQSDYVMTSHDAYCLITEEGEPSTFHEALNGSDAS 801

Query: 1609 L*MTTMHEEIEALYKNKTWQLVPLPHGRKAIGNKWVYKIK 1728
              MT MHEE+EAL++NKTW+LV LP GRKAIGNKWVYKIK
Sbjct: 802  QWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIK 841


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  789 bits (2037), Expect = 0.0
 Identities = 391/580 (67%), Positives = 474/580 (81%), Gaps = 4/580 (0%)
 Frame = +1

Query: 1    EVLYGEASIVAEDRKRLANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIA 180
            E+LY EA+  ++  +RL +VW++DSGATWHMT  R+WF+ YEPISEGSVYMG+DH LEIA
Sbjct: 271  EILYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIA 330

Query: 181  GIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSWGQLDDLGCEICSKNGIMKIVRGALVLM 360
            G+GTI++KM DGTVR IQ VRHVKGL+KNLLS GQLDDLGC+I +++GI+K+V+G LV+M
Sbjct: 331  GVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVM 390

Query: 361  QAEKIGPKLFMLKGETIQEADACVASTSKGEESAMMWHLKLGHMSEQGLKILSDRKLLPG 540
            +AEKI   L+ML G+T+QEADA VA+ S+ EE+ MMWH +LGHMSE+GLK+L +R LL G
Sbjct: 391  KAEKITSNLYMLLGDTLQEADASVAAASQ-EETTMMWHQRLGHMSERGLKVLVERNLLHG 449

Query: 541  LKSVNLPFCEYCVTSKQHRLKFGRSGARSKYILDLIHSDVWESPDTSVGGAKYFVSFIDD 720
            LK+VNLPFCE+CV SKQHRLKF R   RSK+ILDLIHSDVWESP+ S+GGA+YFVSFIDD
Sbjct: 450  LKTVNLPFCEHCVMSKQHRLKFARVTTRSKHILDLIHSDVWESPEISLGGARYFVSFIDD 509

Query: 721  YSRRCWMYPIKRKSDVFPVFKEYKARVELESGKRIKCLRTDNGGEYTDDDFLAFCK*KSI 900
            YSRR W+YPIK+KSDVFPVFK +KA++ELE+ K+IKCLRTDNGGEY D +FLAFCK + I
Sbjct: 510  YSRRLWVYPIKKKSDVFPVFKAFKAQIELETEKKIKCLRTDNGGEYVDGEFLAFCKQEGI 569

Query: 901  DR*FTVAYTPQQNRVAERMNRTLTENIRAMLRTADLPNSFWAEAAN----VINCSPSTAI 1068
             R FTVA+TPQQN VAERMNRTL E  RAML+TA +  SFWAEAA     VIN SPSTAI
Sbjct: 570  VRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAAKTACYVINRSPSTAI 629

Query: 1069 ELKTPMEIWTGKPADYSRLHSFGCPVYVMYNTQERTKLDPKSRRCIFLGYADGVKGYRLW 1248
            +LKTPME+W GKP DYS LH FGCPVYVMYN+QE+TKLDPKSR+CIFLGYAD VKGYRLW
Sbjct: 630  DLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQEKTKLDPKSRKCIFLGYADNVKGYRLW 689

Query: 1249 DSTTHRVIVSRDVVFVDDQLQRKRTDENDSTTKERPETTTVQVENGPINEDLVSSEVAPE 1428
            D T  +V+VSRDVVF +++LQ ++  +NDST+K   ET  VQ+E      D  SSE    
Sbjct: 690  DPTARKVVVSRDVVFAENELQSEQ--KNDSTSK---ETAIVQMEEKSKESD--SSEAESV 742

Query: 1429 HEVQGPVESEAPEVRRSTRERRPPAWHSEYDTESNIAYCLLTEDGEPSTFHEAVSSSNAT 1608
            HE Q P +     VRRSTR+ + P+W S+Y   S+ AYCL+TE+GEPSTFHEA++ S+A+
Sbjct: 743  HEEQEP-DDVNDGVRRSTRQTQKPSWQSDYVMTSHDAYCLITEEGEPSTFHEALNGSDAS 801

Query: 1609 L*MTTMHEEIEALYKNKTWQLVPLPHGRKAIGNKWVYKIK 1728
              MT MHEE+EAL++NKTW+LV LP GRKAIGNKWVYKIK
Sbjct: 802  QWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIK 841


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  788 bits (2036), Expect = 0.0
 Identities = 391/580 (67%), Positives = 474/580 (81%), Gaps = 4/580 (0%)
 Frame = +1

Query: 1    EVLYGEASIVAEDRKRLANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIA 180
            E+LY EA+  ++  +RL +VW++DSGATWHMT  R+WF  YEPISEGSVYMG+DH LEIA
Sbjct: 271  EILYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIA 330

Query: 181  GIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSWGQLDDLGCEICSKNGIMKIVRGALVLM 360
            G+GTI++KM DGTVR IQ VRHVKGL+KNLLS GQLDDLGC+I +++GI+K+V+G LV+M
Sbjct: 331  GVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVM 390

Query: 361  QAEKIGPKLFMLKGETIQEADACVASTSKGEESAMMWHLKLGHMSEQGLKILSDRKLLPG 540
            +AEKI   L+ML G+T+QEADA VA++S+ EE+ MMWH +LGHMSE+GLK+L++R LL G
Sbjct: 391  KAEKITSNLYMLLGDTLQEADASVAASSQ-EETTMMWHQRLGHMSERGLKVLAERNLLHG 449

Query: 541  LKSVNLPFCEYCVTSKQHRLKFGRSGARSKYILDLIHSDVWESPDTSVGGAKYFVSFIDD 720
            LK+VNLPFCE+CV SKQHRLKF R   RSK+ILDLIHSDVWESP+ S+GGA+YFVSFIDD
Sbjct: 450  LKAVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVWESPEISLGGARYFVSFIDD 509

Query: 721  YSRRCWMYPIKRKSDVFPVFKEYKARVELESGKRIKCLRTDNGGEYTDDDFLAFCK*KSI 900
            YSRR W+YPIK+KSDVFPVFK +KA++ELE+ K+IKCLRTDNGGEY D +FLAFCK + I
Sbjct: 510  YSRRLWVYPIKKKSDVFPVFKAFKAQIELETRKKIKCLRTDNGGEYIDGEFLAFCKQEGI 569

Query: 901  DR*FTVAYTPQQNRVAERMNRTLTENIRAMLRTADLPNSFWAEAAN----VINCSPSTAI 1068
             R FTVA+TPQQN VAERMNRTL E  RAML+TA +  SFWAEA      VIN SPSTAI
Sbjct: 570  VRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAI 629

Query: 1069 ELKTPMEIWTGKPADYSRLHSFGCPVYVMYNTQERTKLDPKSRRCIFLGYADGVKGYRLW 1248
            +LKTPME+W GKP DYS LH FGCPVYVMYN+QERTKLDPKSR+CIFLGYAD VKGYRLW
Sbjct: 630  DLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLW 689

Query: 1249 DSTTHRVIVSRDVVFVDDQLQRKRTDENDSTTKERPETTTVQVENGPINEDLVSSEVAPE 1428
            D T  +V+VSRDVVF +++LQ ++  +NDST+K   ET  VQ+E      D  SSE    
Sbjct: 690  DPTARKVVVSRDVVFAENELQSEQ--KNDSTSK---ETAIVQMEEKSKESD--SSEAESV 742

Query: 1429 HEVQGPVESEAPEVRRSTRERRPPAWHSEYDTESNIAYCLLTEDGEPSTFHEAVSSSNAT 1608
            HE Q P +     VRRSTR+ + P+W S+Y   S+ AYCL+TE+GEPSTFHEA++ S+A+
Sbjct: 743  HEEQEP-DDVNDGVRRSTRQTQKPSWQSDYVMTSHDAYCLITEEGEPSTFHEALNGSDAS 801

Query: 1609 L*MTTMHEEIEALYKNKTWQLVPLPHGRKAIGNKWVYKIK 1728
              MT MHEE+EAL++NKTW+LV LP GRKAIGNKWVYKIK
Sbjct: 802  QWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIK 841


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  785 bits (2026), Expect = 0.0
 Identities = 384/575 (66%), Positives = 457/575 (79%), Gaps = 4/575 (0%)
 Frame = +1

Query: 16   EASIVAEDRKRLANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGIGTI 195
            EASI  E RKR A++WLIDSGAT+HMTSR+EWFH YEPIS GSVY  DDH LEI GIGTI
Sbjct: 267  EASIAREGRKRFADIWLIDSGATYHMTSRKEWFHHYEPISGGSVYSCDDHALEIIGIGTI 326

Query: 196  KIKMFDGTVRTIQEVRHVKGLRKNLLSWGQLDDLGCEICSKNGIMKIVRGALVLMQAEKI 375
            K+KM+DGTV+T+Q+VRHVKGL+KNLLS+G LD+   +I ++ G+MKI +GALV+M+ EKI
Sbjct: 327  KLKMYDGTVQTVQDVRHVKGLKKNLLSYGILDNSATQIETQKGVMKIFQGALVVMKGEKI 386

Query: 376  GPKLFMLKGETIQEADACVASTSKGEESAMMWHLKLGHMSEQGLKILSDRKLLPGLKSVN 555
               L+MLKGET+QEA+A VA+ S   +S ++WH KLGHMS+QG+KIL ++KL+PGL  V+
Sbjct: 387  AANLYMLKGETLQEAEASVAACSP--DSTLLWHQKLGHMSDQGMKILVEQKLIPGLTKVS 444

Query: 556  LPFCEYCVTSKQHRLKFGRSGARSKYILDLIHSDVWESPDTSVGGAKYFVSFIDDYSRRC 735
            LP CE+C+TSKQHRLKF  S +R K +L+L+HSDVW++P  S+GGAKYFVSFIDDYSRRC
Sbjct: 445  LPLCEHCITSKQHRLKFSTSNSRGKVVLELVHSDVWQAPVPSLGGAKYFVSFIDDYSRRC 504

Query: 736  WMYPIKRKSDVFPVFKEYKARVELESGKRIKCLRTDNGGEYTDDDFLAFCK*KSIDR*FT 915
            W+YPIK+KSDVF  FK +KARVEL+SGK+IKC RTDNGGEYT ++F  FCK + I R FT
Sbjct: 505  WVYPIKKKSDVFATFKAFKARVELDSGKKIKCFRTDNGGEYTSEEFDDFCKKEGIKRQFT 564

Query: 916  VAYTPQQNRVAERMNRTLTENIRAMLRTADLPNSFWAEAAN----VINCSPSTAIELKTP 1083
            VAYTPQQN VAERMNRTL E  RAMLR A L  SFWAEA N    ++N +PSTAIELKTP
Sbjct: 565  VAYTPQQNGVAERMNRTLLERTRAMLRAAGLEKSFWAEAVNTACYLVNRAPSTAIELKTP 624

Query: 1084 MEIWTGKPADYSRLHSFGCPVYVMYNTQERTKLDPKSRRCIFLGYADGVKGYRLWDSTTH 1263
            ME+WTGKP DYS LH FG  VY MYN QE TKLDPKSR+C FLGYADGVKGYRLWD T H
Sbjct: 625  MEMWTGKPVDYSNLHIFGSIVYAMYNAQEITKLDPKSRKCRFLGYADGVKGYRLWDPTAH 684

Query: 1264 RVIVSRDVVFVDDQLQRKRTDENDSTTKERPETTTVQVENGPINEDLVSSEVAPEHEVQG 1443
            +V++SRDV+FV+D+LQR   D  DST KE+PETT +QVE     +D  SSE  P HE   
Sbjct: 685  KVVISRDVIFVEDRLQRGEVD--DSTEKEKPETTQIQVEE-EFEQD--SSEAEPAHEEPE 739

Query: 1444 PVESEAPEVRRSTRERRPPAWHSEYDTESNIAYCLLTEDGEPSTFHEAVSSSNATL*MTT 1623
            P  S AP  R+S RE+R P WHS+Y  E N+AYCLLTEDGEPSTF EA++SS+ +     
Sbjct: 740  PESSGAPTTRQSDREKRRPTWHSDYVMEGNVAYCLLTEDGEPSTFQEAINSSDVSQWTAA 799

Query: 1624 MHEEIEALYKNKTWQLVPLPHGRKAIGNKWVYKIK 1728
            M EEIEAL+KN TW LVPLP GRK IGNKWV+KIK
Sbjct: 800  MQEEIEALHKNNTWDLVPLPQGRKPIGNKWVFKIK 834


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  784 bits (2024), Expect = 0.0
 Identities = 389/580 (67%), Positives = 469/580 (80%), Gaps = 4/580 (0%)
 Frame = +1

Query: 1    EVLYGEASIVAEDRKRLANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIA 180
            E+LY EA+  +E  ++L +VW++DSGATWHMT  R+WF+ YEPISEGSVYMG+DH LEIA
Sbjct: 271  EILYSEAATSSEGERQLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIA 330

Query: 181  GIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSWGQLDDLGCEICSKNGIMKIVRGALVLM 360
            G+GTI++KM DGTVR IQ VRHVKGL+KNLLS GQLDDLGC+I S++GI+K+V+G LV+M
Sbjct: 331  GVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVM 390

Query: 361  QAEKIGPKLFMLKGETIQEADACVASTSKGEESAMMWHLKLGHMSEQGLKILSDRKLLPG 540
            +AEKI   L+ML G+T+QEADA VA+ S+ EE+ MMWH +LGHMSE+GLK+L +R LL G
Sbjct: 391  KAEKITSNLYMLLGDTLQEADASVAAASQ-EETTMMWHQRLGHMSERGLKVLVERNLLHG 449

Query: 541  LKSVNLPFCEYCVTSKQHRLKFGRSGARSKYILDLIHSDVWESPDTSVGGAKYFVSFIDD 720
            LK+VNLPFCE+CV SKQHRLKF R   RSK+ILDLIHSDVWESP  S+GGA+YFVSFIDD
Sbjct: 450  LKTVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVWESPKLSLGGARYFVSFIDD 509

Query: 721  YSRRCWMYPIKRKSDVFPVFKEYKARVELESGKRIKCLRTDNGGEYTDDDFLAFCK*KSI 900
            YSRR W+YPIK+KSDVFPVFK +KA++ELE+GK+IKCLRTDNGGEY D +FLAFCK + I
Sbjct: 510  YSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGI 569

Query: 901  DR*FTVAYTPQQNRVAERMNRTLTENIRAMLRTADLPNSFWAEAAN----VINCSPSTAI 1068
             R FTVA+TPQQN VAERMNRTL E  RAML+TA++  SFWAEA      VIN SPST I
Sbjct: 570  VRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAEMAKSFWAEAVKTACYVINRSPSTTI 629

Query: 1069 ELKTPMEIWTGKPADYSRLHSFGCPVYVMYNTQERTKLDPKSRRCIFLGYADGVKGYRLW 1248
            +LKTPME+W GKP DYS LH FGCPVYVMYN+QERTKLDPKSR+CIFLGYAD VKGYRLW
Sbjct: 630  DLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLW 689

Query: 1249 DSTTHRVIVSRDVVFVDDQLQRKRTDENDSTTKERPETTTVQVENGPINEDLVSSEVAPE 1428
            D T  +V+VSRDVVF +++LQ ++  +NDST K   ET  +Q+E      D  SSE    
Sbjct: 690  DPTARKVVVSRDVVFAENELQSEQ--KNDSTFK---ETAILQIEEKSKESD--SSEAESV 742

Query: 1429 HEVQGPVESEAPEVRRSTRERRPPAWHSEYDTESNIAYCLLTEDGEPSTFHEAVSSSNAT 1608
            HE Q P +     VRRSTR+ + P+W S+Y    + AYCL+ E+GEPSTFHEA++ S+A+
Sbjct: 743  HEEQEP-DDVNNGVRRSTRQTQKPSWQSDYVMTGHDAYCLIAEEGEPSTFHEALNGSDAS 801

Query: 1609 L*MTTMHEEIEALYKNKTWQLVPLPHGRKAIGNKWVYKIK 1728
              MT +HEE+EAL KNKTW+LV LP GRKAIGNKWVYKIK
Sbjct: 802  QWMTAIHEEMEALRKNKTWELVELPKGRKAIGNKWVYKIK 841


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  449 bits (1156), Expect = e-123
 Identities = 250/608 (41%), Positives = 363/608 (59%), Gaps = 36/608 (5%)
 Frame = +1

Query: 13   GEASIVAEDRK------------RLANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMG 156
            G+A++V +++             + ++ W++D+  T+HM   R+WF  YE +  G+V MG
Sbjct: 181  GKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMG 240

Query: 157  DDHPLEIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSWGQLDDLGCEICSKNGIMKI 336
            DD P E+AGIGT++IKMFDG +RT+ +VRH+  L+++L+S   LD  G +    +GI+K+
Sbjct: 241  DDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKV 300

Query: 337  VRGALVLMQAEKIGPKLFMLKGETIQEADACVASTSKGEESAMMWHLKLGHMSEQGLKIL 516
             +G+LV+M+A+     L+ L+G TI    A V+ +    ++  +WH++LGHMSE GL  L
Sbjct: 301  TKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAEL 360

Query: 517  SDRKLLPGLKSVNLPFCEYCVTSKQHRLKFGRSGARSKYILDLIHSDVW-ESPDTSVGGA 693
            S R LL G     L FCE+C+  K  R+KF  S   ++ ILD +HSD+W  +  TS GGA
Sbjct: 361  SKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGA 420

Query: 694  KYFVSFIDDYSRRCWMYPIKRKSDVFPVFKEYKARVELESGKRIKCLRTDNGGEYTDDDF 873
            +Y ++ +DDYSR+ W Y +K K   F VFKE+K  VE ++ +++K LRTDNG E     F
Sbjct: 421  RYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIF 480

Query: 874  LAFCK*KSIDR*FTVAYTPQQNRVAERMNRTLTENIRAMLRTADLPNSFWAEAAN----V 1041
             ++CK + I R +TV +TPQQN VAERMNRT+    R ML  A LP  FWAEA +    +
Sbjct: 481  KSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYL 540

Query: 1042 INCSPSTAIELKTPMEIWTGKPADYSRLHSFGCPVYVMYNTQERTKLDPKSRRCIFLGYA 1221
            IN SPS AI+ KTP+E+W+G PA+YS L  FGC  Y      +  KL+P+  +CIFLGY 
Sbjct: 541  INRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHV---DNGKLEPRVIKCIFLGYL 597

Query: 1222 DGVKGYRLWDSTTHRVIVSRDVVFVDDQLQRKRTDENDSTTKERPETTTVQVE------N 1383
             GVKGY+LW   T +V++SR+VVF +  +   +   N     E  E  +VQVE      +
Sbjct: 598  SGVKGYKLWCPETKKVVISRNVVFHESIMLHDKPSTN--VPVESQEKVSVQVEHLISSGH 655

Query: 1384 GPINEDLVSSEVAPEHE-------VQGPVESEAPEVRRSTRERRPPAWHSEYDTESNI-A 1539
             P  ED+  ++ AP  E        Q P  S A +  R  R  +PP     Y  E+NI A
Sbjct: 656  APEKEDVAINQDAPVIEDSDSSIVQQSPKRSIAKD--RPKRNTKPP---RRYIEEANIVA 710

Query: 1540 YCL-----LTEDGEPSTFHEAVSSSNATL*MTTMHEEIEALYKNKTWQLVPLPHGRKAIG 1704
            Y L     +  + EPST+ +A+ S +    +T MH+E+E+L KN +W+L  LP  +K I 
Sbjct: 711  YALSVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPIR 770

Query: 1705 NKWVYKIK 1728
             KW++K K
Sbjct: 771  CKWIFKRK 778


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  449 bits (1155), Expect = e-123
 Identities = 251/612 (41%), Positives = 367/612 (59%), Gaps = 40/612 (6%)
 Frame = +1

Query: 13   GEASIVAEDRK------------RLANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMG 156
            G+A++V +++             + ++ W++D+  T+HM   R+WF  YE +  G+V MG
Sbjct: 307  GKAAVVTDEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMG 366

Query: 157  DDHPLEIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSWGQLDDLGCEICSKNGIMKI 336
            DD P E+AGIGT++IKMFDG +RT+ +VRH+  L+++L+S   LD  G +    +GI+K+
Sbjct: 367  DDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKV 426

Query: 337  VRGALVLMQAEKIGPKLFMLKGETIQEADACVASTSKGEESAMMWHLKLGHMSEQGLKIL 516
             +G+LV+M+A+     L+ L+G TI    A V+ +    ++  +WH++LGHMSE GL  L
Sbjct: 427  TKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAEL 486

Query: 517  SDRKLLPGLKSVNLPFCEYCVTSKQHRLKFGRSGARSKYILDLIHSDVW-ESPDTSVGGA 693
            S R+LL G     L FCE+C+  K  R+KF  S   ++ ILD +HSD+W  +  TS GGA
Sbjct: 487  SKRELLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGA 546

Query: 694  KYFVSFIDDYSRRCWMYPIKRKSDVFPVFKEYKARVELESGKRIKCLRTDNGGEYTDDDF 873
            +Y ++ +DDYSR+ W Y +K K   F VFKE+K  VE ++ K++K LRTDNG E+    F
Sbjct: 547  RYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIF 606

Query: 874  LAFCK*KSIDR*FTVAYTPQQNRVAERMNRTLTENIRAMLRTADLPNSFWAEAAN----V 1041
             ++CK + I   +TV +TPQQN VAERMN  +    R ML  ADLP  FWAEA +    +
Sbjct: 607  KSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYL 666

Query: 1042 INCSPSTAIELKTPMEIWTGKPADYSRLHSFGCPVYVMYNTQERTKLDPKSRRCIFLGYA 1221
            IN SPS A + KTP+E+W+G PA+YS L  FGC  Y      +  KL+P++ +CIFLGY 
Sbjct: 667  INRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHV---DNGKLEPRAIKCIFLGYP 723

Query: 1222 DGVKGYRLWDSTTHRVIVSRDVVFVDDQLQRKRTDENDSTTKERPETTTVQVENGPINED 1401
             GVKGY+LW   T +V++SR+VVF +  +   +   N     E  E  +VQVE+      
Sbjct: 724  SGVKGYKLWCPETKKVVISRNVVFHESVILHDKPSTN--VPVESQEKASVQVEH------ 775

Query: 1402 LVSSEVAPEHE-----VQGPV--ESEAPEVRRST----------RERRPPAWHSEYDTES 1530
            L+SS  APE E        PV  +S++  V++S+          R  +PP     Y  E+
Sbjct: 776  LISSGHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSIAKDKPKRNIKPP---RRYIEEA 832

Query: 1531 NI-AYCL-----LTEDGEPSTFHEAVSSSNATL*MTTMHEEIEALYKNKTWQLVPLPHGR 1692
            NI AY L     +  + EPST+ EA+ S +    +T MH+E+E+L KN TW+ V LP  +
Sbjct: 833  NIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEK 892

Query: 1693 KAIGNKWVYKIK 1728
            K I  KW++K K
Sbjct: 893  KPIRCKWIFKRK 904


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  449 bits (1155), Expect = e-123
 Identities = 251/612 (41%), Positives = 367/612 (59%), Gaps = 40/612 (6%)
 Frame = +1

Query: 13   GEASIVAEDRK------------RLANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMG 156
            G+A++V +++             + ++ W++D+  T+HM   R+WF  YE +  G+V MG
Sbjct: 307  GKAAVVTDEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMG 366

Query: 157  DDHPLEIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSWGQLDDLGCEICSKNGIMKI 336
            DD P E+AGIGT++IKMFDG +RT+ +VRH+  L+++L+S   LD  G +    +GI+K+
Sbjct: 367  DDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKV 426

Query: 337  VRGALVLMQAEKIGPKLFMLKGETIQEADACVASTSKGEESAMMWHLKLGHMSEQGLKIL 516
             +G+LV+M+A+     L+ L+G TI    A V+ +    ++  +WH++LGHMSE GL  L
Sbjct: 427  TKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAEL 486

Query: 517  SDRKLLPGLKSVNLPFCEYCVTSKQHRLKFGRSGARSKYILDLIHSDVW-ESPDTSVGGA 693
            S R+LL G     L FCE+C+  K  R+KF  S   ++ ILD +HSD+W  +  TS GGA
Sbjct: 487  SKRELLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGA 546

Query: 694  KYFVSFIDDYSRRCWMYPIKRKSDVFPVFKEYKARVELESGKRIKCLRTDNGGEYTDDDF 873
            +Y ++ +DDYSR+ W Y +K K   F VFKE+K  VE ++ K++K LRTDNG E+    F
Sbjct: 547  RYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIF 606

Query: 874  LAFCK*KSIDR*FTVAYTPQQNRVAERMNRTLTENIRAMLRTADLPNSFWAEAAN----V 1041
             ++CK + I   +TV +TPQQN VAERMN  +    R ML  ADLP  FWAEA +    +
Sbjct: 607  KSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYL 666

Query: 1042 INCSPSTAIELKTPMEIWTGKPADYSRLHSFGCPVYVMYNTQERTKLDPKSRRCIFLGYA 1221
            IN SPS A + KTP+E+W+G PA+YS L  FGC  Y      +  KL+P++ +CIFLGY 
Sbjct: 667  INRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHV---DNGKLEPRAIKCIFLGYP 723

Query: 1222 DGVKGYRLWDSTTHRVIVSRDVVFVDDQLQRKRTDENDSTTKERPETTTVQVENGPINED 1401
             GVKGY+LW   T +V++SR+VVF +  +   +   N     E  E  +VQVE+      
Sbjct: 724  SGVKGYKLWCPETKKVVISRNVVFHESVILHDKPSTN--VPVESQEKASVQVEH------ 775

Query: 1402 LVSSEVAPEHE-----VQGPV--ESEAPEVRRST----------RERRPPAWHSEYDTES 1530
            L+SS  APE E        PV  +S++  V++S+          R  +PP     Y  E+
Sbjct: 776  LISSGHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSIAKDKPKRNIKPP---RRYIEEA 832

Query: 1531 NI-AYCL-----LTEDGEPSTFHEAVSSSNATL*MTTMHEEIEALYKNKTWQLVPLPHGR 1692
            NI AY L     +  + EPST+ EA+ S +    +T MH+E+E+L KN TW+ V LP  +
Sbjct: 833  NIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEK 892

Query: 1693 KAIGNKWVYKIK 1728
            K I  KW++K K
Sbjct: 893  KPIRCKWIFKRK 904


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  449 bits (1154), Expect = e-123
 Identities = 247/608 (40%), Positives = 363/608 (59%), Gaps = 36/608 (5%)
 Frame = +1

Query: 13   GEASIVAEDRK------------RLANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMG 156
            G+A++V +++             + ++ W++++   +HM   R+WF  YE +  G+V MG
Sbjct: 479  GKAAVVTDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMG 538

Query: 157  DDHPLEIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSWGQLDDLGCEICSKNGIMKI 336
            DD P E+AGIGT++IKMFDG +RT+ +VRH+  L+++L+S   LD  G +    +GI+K+
Sbjct: 539  DDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKV 598

Query: 337  VRGALVLMQAEKIGPKLFMLKGETIQEADACVASTSKGEESAMMWHLKLGHMSEQGLKIL 516
             +G+LV+M+A+     L+ L+G TI    A V+ +    ++  +WH++LGHM+E GL  L
Sbjct: 599  TKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAEL 658

Query: 517  SDRKLLPGLKSVNLPFCEYCVTSKQHRLKFGRSGARSKYILDLIHSDVW-ESPDTSVGGA 693
            S R LL G     L FCE+C+  K  R+KF  S   ++ ILD +HSD+W  +  TS GG 
Sbjct: 659  SKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGT 718

Query: 694  KYFVSFIDDYSRRCWMYPIKRKSDVFPVFKEYKARVELESGKRIKCLRTDNGGEYTDDDF 873
            +Y ++ +DDYSR+ W Y +K K   F VFKE+K  VE ++ +++K LRTDNG E+    F
Sbjct: 719  RYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIF 778

Query: 874  LAFCK*KSIDR*FTVAYTPQQNRVAERMNRTLTENIRAMLRTADLPNSFWAEAAN----V 1041
             ++CK + I R +TV +TPQQN VAERMNRT+    R +L  A LP  FWAEA +    +
Sbjct: 779  KSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYL 838

Query: 1042 INCSPSTAIELKTPMEIWTGKPADYSRLHSFGCPVYVMYNTQERTKLDPKSRRCIFLGYA 1221
            IN SPS AI+ KTP+E+W+G PA+YS L  FGC  Y      +  KL+P++ +CIFLGY 
Sbjct: 839  INRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHV---DNGKLEPRAIKCIFLGYP 895

Query: 1222 DGVKGYRLWDSTTHRVIVSRDVVFVDDQLQRKRTDENDSTTKERPETTTVQVE------N 1383
             GVKGY+LW   T +V++SR+VVF +  +   +   N     E  E  +VQVE      +
Sbjct: 896  SGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTN--VPVESQEKASVQVEHLISSGH 953

Query: 1384 GPINEDLVSSEVAPEHE-------VQGPVESEAPEVRRSTRERRPPAWHSEYDTESNI-A 1539
             P  ED+  ++  P  E        Q P  S A +  R  R  +PP     Y  E+NI A
Sbjct: 954  APEKEDVAINQDEPVIEDSNSSIVQQSPKRSIAKD--RPKRNIKPP---QRYIEEANIVA 1008

Query: 1540 YCL-----LTEDGEPSTFHEAVSSSNATL*MTTMHEEIEALYKNKTWQLVPLPHGRKAIG 1704
            Y L     +  + EPST+ EA+ S +    +T MH+E+E+L KN TW+LV LP  +K I 
Sbjct: 1009 YALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIR 1068

Query: 1705 NKWVYKIK 1728
             KW++K K
Sbjct: 1069 CKWIFKRK 1076


>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 813

 Score =  447 bits (1151), Expect = e-123
 Identities = 247/587 (42%), Positives = 363/587 (61%), Gaps = 19/587 (3%)
 Frame = +1

Query: 25   IVAEDRKRLANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGIGTIKIK 204
            IV+       + W++DSG T+HM   R+WF +++ +  G VYMG+D+P +  GIG+IK++
Sbjct: 212  IVSLSASSYPDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGIGSIKLR 271

Query: 205  MFDGTVRTIQEVRHVKGLRKNLLSWGQLDDLGCEICSKNGIMKIVRGALVLMQAEKIGPK 384
              DG+ R +++VR+V  L+KNL+S G L+  G  +  ++GI+K   GALV+++   +   
Sbjct: 272  NHDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATLGALVMLKGV-MKNN 330

Query: 385  LFMLKGETIQEADACVASTSKGE-ESAMMWHLKLGHMSEQGLKILSDRKLLPGLKSVNLP 561
            L+  +G T+    A   S+SK + E+A +WH++LGH  E+ L+IL+ + LL G K+  L 
Sbjct: 331  LYYYQGSTVVGTVAAATSSSKKDAEAAKLWHMRLGHAGEKSLQILTKQGLLKGTKACKLE 390

Query: 562  FCEYCVTSKQHRLKFGRSGARSKYILDLIHSDVWESPDT-SVGGAKYFVSFIDDYSRRCW 738
            FCE+CV  KQ R+KFG +   +K ILD +HSDVW    T S+GG  YFV+F+DD+SRR W
Sbjct: 391  FCEHCVLGKQRRVKFGTAIHNTKGILDYVHSDVWGPAKTPSIGGRHYFVTFVDDFSRRVW 450

Query: 739  MYPIKRKSDVFPVFKEYKARVELESGKRIKCLRTDNGGEYTDDDFLAFCK*KSIDR*FTV 918
            ++ +K K+DV  +F ++KA VE  +G++IK L+TDNGGEY  D FL  C+   I R FTV
Sbjct: 451  VFTMKNKNDVLEIFLKWKAEVENHTGRKIKVLQTDNGGEYKSDPFLNVCQDCGIVRHFTV 510

Query: 919  AYTPQQNRVAERMNRTLTENIRAMLRTADLPNSFWAEAA----NVINCSPSTAIELKTPM 1086
              TPQQN V+ERMN+TL E +  ML  A+L   FWAEA     +++N  PS+AI+ KTP+
Sbjct: 511  RKTPQQNGVSERMNKTLVEKVCCMLSNAELGREFWAEAVTYAQHLVNRLPSSAIDGKTPL 570

Query: 1087 EIWTGKPA-DYSRLHSFGCPVYVMYNTQERTKLDPKSRRCIFLGYADGVKGYRLWDSTTH 1263
            E+W+GKPA DY  LH FG   Y  Y+  E +KLDP++++ +F+G++ GVKGYRLW     
Sbjct: 571  EVWSGKPATDYDSLHVFGSIAY--YHVIE-SKLDPRAKKALFMGFSPGVKGYRLWCLEKK 627

Query: 1264 RVIVSRDVVFVDDQLQRKRTDENDSTTKERPETTTVQVENGP---------INEDLVSSE 1416
            + I+SRDV F +  + +K   E   +T ++ E    QVE  P          ++  ++ E
Sbjct: 628  KTIISRDVTFDESVMLKKVNPEGTDSTPQQVECVRKQVEFEPTVVIPTRNTTSDSPMAEE 687

Query: 1417 VAPEHEV--QGPVESEAP-EVRRSTRERRPPAWHSEYDTESNIAYCLLTEDGEPSTFHEA 1587
             + E EV  Q   +  AP  VRR  R+ + PA   +      +AY L   D  PST+   
Sbjct: 688  ESDEEEVPTQESQQQSAPIAVRRQRRDIQKPARFMDM-----VAYALPVVDDIPSTYPGV 742

Query: 1588 VSSSNATL*MTTMHEEIEALYKNKTWQLVPLPHGRKAIGNKWVYKIK 1728
            + SS +      M EE+++L KNKTW+L  LP G+KAIG KWV+  K
Sbjct: 743  ILSSESGNWAGAMEEEMQSLKKNKTWKLTQLPKGKKAIGCKWVFAKK 789


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  441 bits (1135), Expect = e-121
 Identities = 241/584 (41%), Positives = 337/584 (57%), Gaps = 28/584 (4%)
 Frame = +1

Query: 61   WLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGIGTIKIKMFDGTVRTIQEV 240
            W +D+  T+H  + R+WF  Y+  +  SV MG+D P  I GIG +KI+M DG VR +  V
Sbjct: 263  WTLDTACTFHTCAHRDWFDTYKEGNTRSVLMGNDSPSRIMGIGMVKIRMHDGIVRALGNV 322

Query: 241  RHVKGLRKNLLSWGQLDDLGCEICSKNGIMKIVRGALVLMQAEKIGPKLFMLKGETIQEA 420
            RH  GL +NL+S   +D +G     +NG++K+ +G +V M+       ++ L G T++  
Sbjct: 323  RHTPGLNRNLISLSTMDRVGFWHKGQNGVLKVGKGQMVYMKGAIQPDNMYKLTGSTVEGG 382

Query: 421  DACVASTSKGEESAMMWHLKLGHMSEQGLKILSDRKLLPGLKSVNLPFCEYCVTSKQHRL 600
                A     E+   +W  +LGHMS++GL+ L  ++ L G+ S  L FC YC   KQ R+
Sbjct: 383  ----AGVCTEEDKTELWRRRLGHMSQRGLQELHKKEQLDGVMSAALEFCRYCTLGKQTRV 438

Query: 601  KFGRSGA--RSKYILDLIHSDVW-ESPDTSVGGAKYFVSFIDDYSRRCWMYPIKRKSDVF 771
             F  S +  +SK +LD IH+DVW  S   S GGA+YFVSFIDD+SR+ W++ +K K++VF
Sbjct: 439  SFNLSSSENKSKGVLDYIHTDVWGPSATISKGGARYFVSFIDDFSRKVWIFFMKTKNEVF 498

Query: 772  PVFKEYKARVELESGKRIKCLRTDNGGEYTDDDFLAFCK*KSIDR*FTVAYTPQQNRVAE 951
              FKE+KA V  ++G++IKCLR+DNGGEY D  FL  CK + I R FTV  +PQQN VAE
Sbjct: 499  TKFKEWKAEVGNQTGRKIKCLRSDNGGEYRDKKFLQLCKDEGITRHFTVKKSPQQNGVAE 558

Query: 952  RMNRTLTENIRAMLRTADLPNSFWAEAAN----VINCSPSTAIELKTPMEIWTGKPADYS 1119
            RMNRTL E  R+M   A LP  FWAEAAN    +IN SPS AI  K   E+W+GKP DYS
Sbjct: 559  RMNRTLMEKERSMRFHAGLPEEFWAEAANHACYLINRSPSRAINFKCAEEVWSGKPVDYS 618

Query: 1120 RLHSFGCPVYVMYNTQERTKLDPKSRRCIFLGYADGVKGYRLWDSTTHRVIVSRDVVF-- 1293
             L  FGC  Y      ERTKL+PKS  C+F+G+  GVKGY+LWD    + ++SRDVVF  
Sbjct: 619  NLRVFGCSAYAHIPKDERTKLEPKSLECLFIGFEKGVKGYKLWDIVNEKKVISRDVVFDE 678

Query: 1294 -------------VDDQLQRKRTDE-NDSTTKERPE-----TTTVQVENGPINEDLVSSE 1416
                          D + Q ++ ++ ND    E PE     T   QVE  P         
Sbjct: 679  REAISISLAKPSVADSEAQVEQNEQGNDEVAIEEPEHQQQPTVMAQVEQSPQRGQNSPIP 738

Query: 1417 VAPEHEVQGPVESEAPEVRRSTRERRPPAWHSEYDTESNIAYCLLTEDGEPSTFHEAVSS 1596
             APE   +  +  + P      +  R P     ++ E +++  L    G+P+T+ +A+ S
Sbjct: 739  QAPE-SFKRSIALDKP------KRNRKPIQRFGFEPEEDVSRALSISQGDPTTYEDAIES 791

Query: 1597 SNATL*MTTMHEEIEALYKNKTWQLVPLPHGRKAIGNKWVYKIK 1728
              +   +  M EE+E+L+KN  W+LVP P  RK +G KWV++ K
Sbjct: 792  VESAGWIGAMTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKK 835


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score =  434 bits (1116), Expect = e-118
 Identities = 246/595 (41%), Positives = 355/595 (59%), Gaps = 23/595 (3%)
 Frame = +1

Query: 13   GEASIVAEDRK------------RLANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMG 156
            G+A++V +++             + ++ W++D+  T+HM   R+WF  YE +  G+V MG
Sbjct: 104  GKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMG 163

Query: 157  DDHPLEIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSWGQLDDLGCEICSKNGIMKI 336
            DD P E+AGIG ++IKMFDG + T+ +VRH+  L+++L+S   LD  G +    +GI+K+
Sbjct: 164  DDTPCEVAGIGIVQIKMFDGCISTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKV 223

Query: 337  VRGALVLMQAEKIGPKLFMLKGETIQEADACVASTSKGEESAMMWHLKLGHMSEQGLKIL 516
             +G+LV+M+A+     L+ L+G TI    A V+ +    ++  +WH++LGHMSE GL  L
Sbjct: 224  TKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAEL 283

Query: 517  SDRKLLPGLKSVNLPFCEYCVTSKQHRLKFGRSGARSKYILDLIHSDVW-ESPDTSVGGA 693
            S R LL G     L FCE+C+  K  R+KF  S   ++ ILD +HSD+W  +  TS GGA
Sbjct: 284  SKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGA 343

Query: 694  KYFVSFIDDYSRRCWMYPIKRKSDVFPVFKEYKARVELESGKRIKCLRTDNGGEYTDDDF 873
            +Y ++ +DDYSR+ W Y +K K   F VFKE+K  VE ++ +++K LRTDNG E+    F
Sbjct: 344  RYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIF 403

Query: 874  LAFCK*KSIDR*FTVAYTPQQNRVAERMNRTLTENIRAMLRTADLPNSFWAEAAN----V 1041
             ++CK + I R     YTPQQN VAERMNRT+    R ML  A LP  FWA A +    +
Sbjct: 404  KSYCKSEGIVR----HYTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAAAVSTTCYL 459

Query: 1042 INCSPSTAIELKTPMEIWTGKPADYSRLHSFGCPVYVMYNTQERTKLDPKSRRCIFLGYA 1221
            IN SPS AI+ KTP+++W+G PA+YS L  FGC  Y      +  KL+P++ +CIFLGY+
Sbjct: 460  INRSPSYAIDKKTPIKVWSGFPANYSDLRVFGCTAYAHV---DNGKLEPRAIKCIFLGYS 516

Query: 1222 DGVKGYRLWDSTTHRVIVSRDVVFVDDQLQRKRTDENDSTTKERPETTTVQVENGPINED 1401
             GVKGY+LW   T +V++SR+VVF            ++S       +T V VE       
Sbjct: 517  SGVKGYKLWCPETKKVVISRNVVF------------HESVMLHDKPSTNVPVE------- 557

Query: 1402 LVSSEVAPEHEVQGPVESEAPEVRRSTRERRPPAWHSEYDTESNI-AYCL-LTED----G 1563
              S E A    VQ P  S A +  +  R  +PP     Y  E+NI AY L +TE+     
Sbjct: 558  --SQEKA---SVQFPKRSIAKD--KPKRNTKPP---QRYIEEANIVAYALSVTEEIEGNA 607

Query: 1564 EPSTFHEAVSSSNATL*MTTMHEEIEALYKNKTWQLVPLPHGRKAIGNKWVYKIK 1728
            EPST+ EA+ S +    +TTMH+E+E+L KN TW+LV LP  +K I  KW++K K
Sbjct: 608  EPSTYSEAIVSDDCNRWITTMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRK 662


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
          Length = 944

 Score =  432 bits (1110), Expect = e-118
 Identities = 245/595 (41%), Positives = 354/595 (59%), Gaps = 23/595 (3%)
 Frame = +1

Query: 13   GEASIVAEDRK------------RLANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMG 156
            G+A++V +++             + ++ W++D+  T+HM   R+WF  YE +  G+V MG
Sbjct: 104  GKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMG 163

Query: 157  DDHPLEIAGIGTIKIKMFDGTVRTIQEVRHVKGLRKNLLSWGQLDDLGCEICSKNGIMKI 336
            DD P E+AGIG ++IKMFDG + T+ +VRH+  L+++L+S   LD  G +    +GI+K+
Sbjct: 164  DDTPCEVAGIGIVQIKMFDGCISTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKV 223

Query: 337  VRGALVLMQAEKIGPKLFMLKGETIQEADACVASTSKGEESAMMWHLKLGHMSEQGLKIL 516
             +G+LV+M+A+     L+ L+G TI    A V+ +    ++  +WH++LGHMSE GL  L
Sbjct: 224  TKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAEL 283

Query: 517  SDRKLLPGLKSVNLPFCEYCVTSKQHRLKFGRSGARSKYILDLIHSDVW-ESPDTSVGGA 693
            S R LL G     L FCE+C+  K  R+KF  S   ++ ILD +HSD+W  +  TS GGA
Sbjct: 284  SKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGA 343

Query: 694  KYFVSFIDDYSRRCWMYPIKRKSDVFPVFKEYKARVELESGKRIKCLRTDNGGEYTDDDF 873
            +Y ++ +DDYSR+ W Y +K K   F VFKE+K  VE ++ +++K LRTDNG E+    F
Sbjct: 344  RYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIF 403

Query: 874  LAFCK*KSIDR*FTVAYTPQQNRVAERMNRTLTENIRAMLRTADLPNSFWAEAAN----V 1041
             ++CK + I R     YTPQQN VAERMNRT+    R ML  A LP  FWA A +    +
Sbjct: 404  KSYCKSEGIVR----HYTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAAAVSTTCYL 459

Query: 1042 INCSPSTAIELKTPMEIWTGKPADYSRLHSFGCPVYVMYNTQERTKLDPKSRRCIFLGYA 1221
            IN SPS AI+ KTP+++W+G PA+YS L  FGC  Y      +  KL+P++ +CIFLGY+
Sbjct: 460  INRSPSYAIDKKTPIKVWSGFPANYSDLRVFGCTAYAHV---DNGKLEPRAIKCIFLGYS 516

Query: 1222 DGVKGYRLWDSTTHRVIVSRDVVFVDDQLQRKRTDENDSTTKERPETTTVQVENGPINED 1401
             GVKGY+LW   T +V++SR+VVF            ++S       +T V VE       
Sbjct: 517  SGVKGYKLWCPETKKVVISRNVVF------------HESVMLHDKPSTNVPVE------- 557

Query: 1402 LVSSEVAPEHEVQGPVESEAPEVRRSTRERRPPAWHSEYDTESNI-AYCL-LTED----G 1563
              S E A    VQ P  S A +  +  R  +PP     Y  E+NI AY L +TE+     
Sbjct: 558  --SQEKA---SVQFPKRSIAKD--KPKRNTKPP---QRYIEEANIVAYALSVTEEIEGNA 607

Query: 1564 EPSTFHEAVSSSNATL*MTTMHEEIEALYKNKTWQLVPLPHGRKAIGNKWVYKIK 1728
            EPS + EA+ S +    +TTMH+E+E+L KN TW+LV LP  +K I  KW++K K
Sbjct: 608  EPSIYSEAIVSDDCNRWITTMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRK 662


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  429 bits (1104), Expect = e-117
 Identities = 248/590 (42%), Positives = 355/590 (60%), Gaps = 19/590 (3%)
 Frame = +1

Query: 16   EASIVAEDRKRLANVWLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGIGTI 195
            + ++VA++    ++VW++DSGA++H+  RREWF  YE +  GS+ M +    ++ G G+I
Sbjct: 264  DIALVADEHTHHSDVWVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSI 323

Query: 196  KIKMFDGTVRTIQEVRHVKGLRKNLLSWGQLDDLGCEICSKNGIMKIVRGALVLMQAEKI 375
            KI+  DG+  T+ EVRHV  + KNL+S   LD  G     K+G++++ +G+ ++++    
Sbjct: 324  KIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMR 383

Query: 376  GPKLFMLKGETIQEADACVASTSKGEESAMMWHLKLGHMSEQGLKILSDRKLLPGLKSVN 555
            G  L+ L+G T+  +    +S    ++   +WH++LGHM E+G++ILS   LL G K  +
Sbjct: 384  GT-LYFLQGSTVTGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKS 442

Query: 556  LPFCEYCVTSKQHRLKFGRSGARSKYILDLIHSDVWESPDT-SVGGAKYFVSFIDDYSRR 732
            L FCE+CV  K HR KF ++  R+K  LD IHSD W      S+GG ++FVS IDDYSR 
Sbjct: 443  LEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRM 502

Query: 733  CWMYPIKRKSDVFPVFKEYKARVELESGKRIKCLRTDNGGEYTDDDFLAFCK*KSIDR*F 912
             W+Y +K KS+ F  FKE+K  +E ++GK+IK LRTDNG E+   +F  FCK + I R  
Sbjct: 503  TWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHR 562

Query: 913  TVAYTPQQNRVAERMNRTLTENIRAMLRTADLPNSFWAEAAN----VINCSPSTAIELKT 1080
            TV  TPQQN VAERMN+TL E  R ML  A L   FWAEA +    +IN  P T I+ KT
Sbjct: 563  TVRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKT 622

Query: 1081 PMEIWTGKPADYSRLHSFGCPVYVMYNTQERTKLDPKSRRCIFLGYADGVKGYRLWDSTT 1260
            PME+W+GK ADYS L +FGC  Y  Y+  E  KL+P++++ +F+GY DGVKG+R+W    
Sbjct: 623  PMEMWSGKAADYSNLKAFGCTAY--YHVSE-GKLEPRAKKGVFVGYGDGVKGFRIWSPAE 679

Query: 1261 HRVIVSRDVVFVDDQLQRKRTDENDSTTKERPETTTVQVENGPINEDLVSSEVAPEHEVQ 1440
             RVI+SR+VVF  D+    RT    +TT E   +   QVE   I  +  S    PE E Q
Sbjct: 680  KRVIMSRNVVF--DESPLLRTIVKPTTTSE-TGSLDKQVEFQVIQNE--SDLKEPEEEDQ 734

Query: 1441 GP-VESEAPE-----VRRSTRERRPPAW----HSEYDTESNIAYCLL----TEDGEPSTF 1578
             P  E++ PE     + +S  + RP        + Y  E  + Y L      +  EPST+
Sbjct: 735  EPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTY 794

Query: 1579 HEAVSSSNATL*MTTMHEEIEALYKNKTWQLVPLPHGRKAIGNKWVYKIK 1728
             EA+ SS++      M +E+E+L+KN+TW LV  P GRK I  KWV+K K
Sbjct: 795  KEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKK 844


>emb|CAN71109.1| hypothetical protein VITISV_001479 [Vitis vinifera]
          Length = 1246

 Score =  425 bits (1092), Expect = e-116
 Identities = 234/568 (41%), Positives = 344/568 (60%), Gaps = 12/568 (2%)
 Frame = +1

Query: 61   WLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGIGTIKIKMFDGTVRTIQEV 240
            W++DSGA++H T  RE    Y     G VY+ D   L++ G+G ++I + +G+V  +++V
Sbjct: 258  WVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKV 317

Query: 241  RHVKGLRKNLLSWGQLDDLGCEICSKNGIMKIVRGALVLMQAEKIGPKLFMLK--GETIQ 414
            RH+  LR+NL+S GQLDD G  I    G  K+ +GA VL + +K G  L+M     +TI 
Sbjct: 318  RHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGT-LYMTSCPRDTIA 376

Query: 415  EADACVASTSKGEESAMMWHLKLGHMSEQGLKILSDRKLLPGLKSVNLPFCEYCVTSKQH 594
             ADA   ++        +WH +LGHMSE+G+K+L  +  LP LKS++   CE C+  KQ 
Sbjct: 377  VADASTDTS--------LWHRRLGHMSEKGMKMLLSKGKLPELKSIDFDMCESCILGKQK 428

Query: 595  RLKFGRSGARSKYI-LDLIHSDVW-ESPDTSVGGAKYFVSFIDDYSRRCWMYPIKRKSDV 768
            ++ F ++G   K   L+L+H+D+W  SP  S+GG++Y+++FIDD SR+ W+Y +K KSDV
Sbjct: 429  KVSFLKTGRTPKAEKLELVHTDLWGPSPVASLGGSRYYITFIDDSSRKVWVYFLKNKSDV 488

Query: 769  FPVFKEYKARVELESGKRIKCLRTDNGGEYTDDDFLAFCK*KSIDR*FTVAYTPQQNRVA 948
            F  FK++K  VE E+G ++KCLR+DNGGEY D  F  +C  + I    T+  TPQQN VA
Sbjct: 489  FVTFKKWKXMVETETGLKVKCLRSDNGGEYIDGGFSEYCAAQGIRMEKTIPGTPQQNGVA 548

Query: 949  ERMNRTLTENIRAMLRTADLPNSFWAE----AANVINCSPSTAIELKTPMEIWTGKPADY 1116
            ERMNRTL E  R+M   A LP +FWA+    AA +IN  PS  +E + P E+W+GK   +
Sbjct: 549  ERMNRTLNERARSMRLHAGLPKTFWADAVSTAAYLINRGPSVPMEFRLPEEVWSGKEVKF 608

Query: 1117 SRLHSFGCPVYVMYNTQERTKLDPKSRRCIFLGYADGVKGYRLWDSTTHRVIVSRDVVFV 1296
            S L  FGC  YV  ++  R+KLD KS+ C F+GY D   GYR WD    ++I SR+V+F 
Sbjct: 609  SHLKVFGCVSYVHIDSDARSKLDAKSKICFFIGYGDEKFGYRFWDEQNRKIIRSRNVIFN 668

Query: 1297 DDQLQRKR-TDENDSTTKERPETTTVQVENGPINEDLVSSEVAPEHE-VQGPVESEAP-- 1464
            +  + + R T  +D T  ++ ++  V ++   + E  V      + E V   V+   P  
Sbjct: 669  EQVMYKDRSTVTSDVTEIDQKKSEFVNLDE--LTESTVQKGGEEDKENVNSQVDLSTPVV 726

Query: 1465 EVRRSTRERRPPAWHSEYDTESNIAYCLLTEDGEPSTFHEAVSSSNATL*MTTMHEEIEA 1644
            EVRRS+R  RPP  +S       + Y LLT+ GEP  + EA+   N++     M +E+++
Sbjct: 727  EVRRSSRNTRPPQRYSPV-----LNYLLLTDGGEPECYDEALQDENSSKWELAMKDEMDS 781

Query: 1645 LYKNKTWQLVPLPHGRKAIGNKWVYKIK 1728
            L  N+TW+L  LP G+KA+ NKWVY+IK
Sbjct: 782  LLGNQTWELTELPVGKKALHNKWVYRIK 809


>emb|CAN69340.1| hypothetical protein VITISV_032634 [Vitis vinifera]
          Length = 1298

 Score =  424 bits (1089), Expect = e-115
 Identities = 233/567 (41%), Positives = 339/567 (59%), Gaps = 11/567 (1%)
 Frame = +1

Query: 61   WLIDSGATWHMTSRREWFHKYEPISEGSVYMGDDHPLEIAGIGTIKIKMFDGTVRTIQEV 240
            W++DSGA++H T  RE    Y     G VY+ D   L++ G+G ++I + +G+V  +++V
Sbjct: 286  WVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKV 345

Query: 241  RHVKGLRKNLLSWGQLDDLGCEICSKNGIMKIVRGALVLMQAEKIGPKLFMLK--GETIQ 414
            RH+  LR+NL+S GQLDD G  I    G  K+ +G  VL + +K G  L+M     +TI 
Sbjct: 346  RHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGVRVLARGKKTGT-LYMTSCPRDTIA 404

Query: 415  EADACVASTSKGEESAMMWHLKLGHMSEQGLKILSDRKLLPGLKSVNLPFCEYCVTSKQH 594
             ADA   ++        +WH +LGHMSE+G+K+L  +  LP LKS++   CE C+  KQ 
Sbjct: 405  VADASTDTS--------LWHRRLGHMSEKGMKMLLSKGKLPELKSIDFDMCESCILGKQK 456

Query: 595  RLKFGRSGARSKYI-LDLIHSDVW-ESPDTSVGGAKYFVSFIDDYSRRCWMYPIKRKSDV 768
            ++ F ++G   K   L+L+H+D+W  SP  S+GG++Y+++FIDD SR+ W+Y +K KSDV
Sbjct: 457  KVSFLKTGRTPKAEKLELVHTDLWGPSPVASLGGSRYYITFIDDSSRKVWVYFLKNKSDV 516

Query: 769  FPVFKEYKARVELESGKRIKCLRTDNGGEYTDDDFLAFCK*KSIDR*FTVAYTPQQNRVA 948
            F  FK++KA VE E+G ++KCLR+DNGGEY D  F  +C  + I    T+  TPQQN VA
Sbjct: 517  FVTFKKWKAMVETETGLKVKCLRSDNGGEYIDGGFSEYCAAQGIRMEKTIPGTPQQNGVA 576

Query: 949  ERMNRTLTENIRAMLRTADLPNSFWAE----AANVINCSPSTAIELKTPMEIWTGKPADY 1116
            ERMNRTL E  R+M   A LP +FWA+    AA +IN  PS  +E + P E+W+GK   +
Sbjct: 577  ERMNRTLNERARSMRLHAGLPKTFWADAVSTAAYLINRGPSVPMEFRLPEEVWSGKEVKF 636

Query: 1117 SRLHSFGCPVYVMYNTQERTKLDPKSRRCIFLGYADGVKGYRLWDSTTHRVIVSRDVVFV 1296
            S L  FGC  YV  ++  R+KLD KS+ C F+GY D   GYR WD    ++I SR+V+F 
Sbjct: 637  SHLKVFGCVSYVHIDSDARSKLDAKSKICFFIGYGDEKFGYRFWDEQNRKIIRSRNVIFN 696

Query: 1297 DDQLQRKRTDENDSTTKERPETTTVQVENGPINEDLVSSEVAPEHE-VQGPVESEAP--E 1467
            +  + + R       T E  +  +  V    + E  V      + E V   V+   P  E
Sbjct: 697  EQVMYKDRLTVTSXVT-EIDQKKSEFVNLDELTESTVQKRGEEDKENVNSKVDLRTPVVE 755

Query: 1468 VRRSTRERRPPAWHSEYDTESNIAYCLLTEDGEPSTFHEAVSSSNATL*MTTMHEEIEAL 1647
            VRRS+R  RPP  +S       + Y LLT+ GEP  ++EA+   N++     M +E+++L
Sbjct: 756  VRRSSRNIRPPQRYSPV-----LNYLLLTDGGEPECYNEALQDENSSKWELAMKDEMDSL 810

Query: 1648 YKNKTWQLVPLPHGRKAIGNKWVYKIK 1728
              N+TW+L  LP G+KA+ NKWVY+IK
Sbjct: 811  LGNQTWELTELPVGKKALHNKWVYRIK 837


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  419 bits (1078), Expect = e-114
 Identities = 225/587 (38%), Positives = 344/587 (58%), Gaps = 31/587 (5%)
 Frame = +1

Query: 61   WLIDSGATWHMTSRREWFHKYEPISEGSVY-MGDDHPLEIAGIGTIKIKMFDGTVRTIQE 237
            W++DS  ++H+ ++R WF  Y+P+ +G V  MGDD+P  I GIG+++IK  DG  RT++ 
Sbjct: 290  WILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKN 349

Query: 238  VRHVKGLRKNLLSWGQLDDLGCEICSKNGIMKIVRGALVLMQAEKIGPKLFMLKGETIQE 417
            VR++ G+ +NL+S   LD  G +    +G++K+ +G+LV ++ +    KL++L+G T+  
Sbjct: 350  VRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTG 409

Query: 418  ADACVASTSKGEESAM-MWHLKLGHMSEQGLKILSDRKLLPGLKSVNLPFCEYCVTSKQH 594
            +D+  A+ +  E S   +WH++LGHMS  G+  L  R LL G  S  + FCE+C+  K  
Sbjct: 410  SDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHK 469

Query: 595  RLKFGRSGARSKYILDLIHSDVW-ESPDTSVGGAKYFVSFIDDYSRRCWMYPIKRKSDVF 771
            R++F  S   +K  LD +H+D+W  S   S+GGA+Y ++ IDDYSR+ W Y +K K D F
Sbjct: 470  RVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTF 529

Query: 772  PVFKEYKARVELESGKRIKCLRTDNGGEYTDDDFLAFCK*KSIDR*FTVAYTPQQNRVAE 951
              FK +K  +E ++ +++K LRTDNGGE+    F  +C+ + I R  T+ +TPQQN VAE
Sbjct: 530  TAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAE 589

Query: 952  RMNRTLTENIRAMLRTADLPNSFWAEAAN----VINCSPSTAIELKTPMEIWTGKPADYS 1119
            RMNRT+    R ML  A +   FWAEAA+    +IN SPS  +  KTP+E+W+G PADYS
Sbjct: 590  RMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYS 649

Query: 1120 RLHSFGCPVYVMYNTQERTKLDPKSRRCIFLGYADGVKGYRLWDSTTHRVIVSRDVVFVD 1299
            +L  FGC  Y      +  KL+P++ +C+FLGY  GVKGY+LW+  T +  +SR VVF +
Sbjct: 650  QLKVFGCTAYAHV---DNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNE 706

Query: 1300 ----------DQLQRKRTDENDSTTKERPETTTVQV----ENGPINEDLVSSEVAPEHEV 1437
                      + +  K         +   + T VQV    E    N D+   +   + + 
Sbjct: 707  SVMFTNSLPSEHVPEKELQRMHMQVEHVDDYTGVQVEPVHEQDDHNNDVADDDAHDDVQQ 766

Query: 1438 QGPV---ESEAP-EVRRSTRERRPPAWHSEYDTESNIAYCLLT------EDGEPSTFHEA 1587
              P+   E E P   R+S R  +PP    E   E N++Y  L+         EP+T+ EA
Sbjct: 767  TPPILQLEEELPIAQRKSKRTTKPPKRLIE---ECNLSYYALSCAEQVENVHEPATYKEA 823

Query: 1588 VSSSNATL*MTTMHEEIEALYKNKTWQLVPLPHGRKAIGNKWVYKIK 1728
            V   ++   ++ MHEE+++L KN TW++VPLP  +K I  KW++K K
Sbjct: 824  VRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRK 870