BLASTX nr result
ID: Ephedra29_contig00028200
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra29_contig00028200
(258 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_008781635.1 PREDICTED: pentatricopeptide repeat-containing pr... 62 2e-09
XP_009409577.1 PREDICTED: pentatricopeptide repeat-containing pr... 61 5e-09
XP_010931004.1 PREDICTED: pentatricopeptide repeat-containing pr... 61 6e-09
XP_007199657.1 hypothetical protein PRUPE_ppa003439mg [Prunus pe... 61 6e-09
ONH92510.1 hypothetical protein PRUPE_8G178700 [Prunus persica] 61 6e-09
ONK68912.1 uncharacterized protein A4U43_C05F17330 [Asparagus of... 60 2e-08
XP_019195936.1 PREDICTED: pentatricopeptide repeat-containing pr... 60 2e-08
XP_016650691.1 PREDICTED: pentatricopeptide repeat-containing pr... 59 2e-08
XP_002274427.1 PREDICTED: pentatricopeptide repeat-containing pr... 59 3e-08
GAU32340.1 hypothetical protein TSUD_43820 [Trifolium subterraneum] 59 4e-08
KZM95565.1 hypothetical protein DCAR_018807 [Daucus carota subsp... 58 6e-08
XP_008801421.1 PREDICTED: pentatricopeptide repeat-containing pr... 58 6e-08
XP_017249970.1 PREDICTED: pentatricopeptide repeat-containing pr... 58 6e-08
XP_018474515.1 PREDICTED: putative pentatricopeptide repeat-cont... 58 8e-08
XP_006855329.2 PREDICTED: pentatricopeptide repeat-containing pr... 58 8e-08
ERN16796.1 hypothetical protein AMTR_s00057p00087430 [Amborella ... 58 8e-08
XP_013629565.1 PREDICTED: putative pentatricopeptide repeat-cont... 58 8e-08
XP_018474514.1 PREDICTED: putative pentatricopeptide repeat-cont... 58 8e-08
BAD67155.1 PpPPR_98 [Physcomitrella patens] 58 8e-08
XP_001780298.1 predicted protein [Physcomitrella patens] EDQ5485... 58 8e-08
>XP_008781635.1 PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Phoenix dactylifera]
Length = 484
Score = 62.4 bits (150), Expect = 2e-09
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Frame = -3
Query: 256 LRNEVGVGTAIVSMYSKHGNDGSDVLRAFQEVCDKNPKTWNAFIVGLSN---LDEALLVM 86
L V VGTA+V MY K G D + R F + +K+ +WNA I GLS ++EALLV
Sbjct: 257 LEMSVFVGTALVDMYGKCG-DLDNARRMFHSMTEKSVASWNALIGGLSANGCVEEALLVF 315
Query: 85 RKMLNYGIYPNFFTLSSVLKKCQ 17
+M+ GI PN TLS +L C+
Sbjct: 316 EEMIGMGIEPNSVTLSCILSACR 338
>XP_009409577.1 PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
chloroplastic [Musa acuminata subsp. malaccensis]
Length = 794
Score = 61.2 bits (147), Expect = 5e-09
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Frame = -3
Query: 256 LRNEVGVGTAIVSMYSKHGNDGSDVLRAFQEVCDKNPKTWNAFIVGLSN---LDEALLVM 86
L ++V V A+V +Y+KH D D +RAF + N +W AF+ GL+ + LL +
Sbjct: 377 LEDDVSVANALVDLYAKHSRDLDDTVRAFAAIVSPNIVSWTAFMAGLARHGLEQKVLLAL 436
Query: 85 RKMLNYGIYPNFFTLSSVLKKC 20
+M G+ PN F+LS+VL C
Sbjct: 437 VEMRLTGVEPNSFSLSTVLSSC 458
>XP_010931004.1 PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like isoform X1 [Elaeis guineensis]
Length = 530
Score = 60.8 bits (146), Expect = 6e-09
Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Frame = -3
Query: 256 LRNEVGVGTAIVSMYSKHGNDGSDVLRAFQEVCDKNPKTWNAFIVGLSN---LDEALLVM 86
L V VGTA+V MY K G D + R F + +K+ +WNA I GLS ++EALLV
Sbjct: 292 LEMSVFVGTALVDMYGKCG-DLDNARRMFHLMTEKSVASWNALIGGLSANGCVEEALLVF 350
Query: 85 RKMLNYGIYPNFFTLSSVLKKCQ 17
+M+ G+ PN TLS +L C+
Sbjct: 351 EEMMRMGVKPNSVTLSCILSACR 373
>XP_007199657.1 hypothetical protein PRUPE_ppa003439mg [Prunus persica]
Length = 574
Score = 60.8 bits (146), Expect = 6e-09
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Frame = -3
Query: 256 LRNEVGVGTAIVSMYSKHGNDGSDVLRAFQEVCDKNPKTWNAFIV--GLSNL-DEALLVM 86
L EV VGTAIV MYSK G+ G + +AF ++ +KN +W+A I G++ L EAL ++
Sbjct: 309 LSAEVAVGTAIVDMYSKCGSIG-ESRKAFGQILEKNTVSWSAMIAAYGMNGLGHEALALL 367
Query: 85 RKMLNYGIYPNFFTLSSVLKKC 20
+M YG+ PN T+ SVL C
Sbjct: 368 AEMKLYGLKPNAVTILSVLSAC 389
>ONH92510.1 hypothetical protein PRUPE_8G178700 [Prunus persica]
Length = 751
Score = 60.8 bits (146), Expect = 6e-09
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Frame = -3
Query: 256 LRNEVGVGTAIVSMYSKHGNDGSDVLRAFQEVCDKNPKTWNAFIV--GLSNL-DEALLVM 86
L EV VGTAIV MYSK G+ G + +AF ++ +KN +W+A I G++ L EAL ++
Sbjct: 486 LSAEVAVGTAIVDMYSKCGSIG-ESRKAFGQILEKNTVSWSAMIAAYGMNGLGHEALALL 544
Query: 85 RKMLNYGIYPNFFTLSSVLKKC 20
+M YG+ PN T+ SVL C
Sbjct: 545 AEMKLYGLKPNAVTILSVLSAC 566
>ONK68912.1 uncharacterized protein A4U43_C05F17330 [Asparagus officinalis]
Length = 701
Score = 59.7 bits (143), Expect = 2e-08
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = -3
Query: 256 LRNEVGVGTAIVSMYSKHGNDGSDVLRAFQEVCDKNPKTWNAFIVGLSNLD--EALLVMR 83
L V VG+++V Y+K D F EV +KN TWNA I G SN D + L+++R
Sbjct: 316 LSTSVYVGSSLVDFYAK-SKRWEDAYAMFSEVPNKNVVTWNALITGYSNKDSSDMLVLVR 374
Query: 82 KMLNYGIYPNFFTLSSVLKK 23
+ML G PN FT SS+L+K
Sbjct: 375 EMLCSGFRPNEFTFSSILRK 394
>XP_019195936.1 PREDICTED: pentatricopeptide repeat-containing protein At3g58590
[Ipomoea nil]
Length = 769
Score = 59.7 bits (143), Expect = 2e-08
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Frame = -3
Query: 256 LRNEVGVGTAIVSMYSKHGNDGSDVLRAFQEVCDKNPKTWNAFIVGLSN--LDEALLVMR 83
L N+V VG+A+ Y K + + R F E+C+K+ +WN ++G SN E++L++R
Sbjct: 383 LENDVYVGSALTEFYVKF-DKLEEARRCFNEICEKSLVSWNTLMLGYSNRGSPESILLLR 441
Query: 82 KMLNYGIYPNFFTLSSVLK 26
+M+ G YPN F+ S V+K
Sbjct: 442 EMIRLGFYPNGFSFSIVIK 460
>XP_016650691.1 PREDICTED: pentatricopeptide repeat-containing protein At2g17210
[Prunus mume]
Length = 751
Score = 59.3 bits (142), Expect = 2e-08
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Frame = -3
Query: 256 LRNEVGVGTAIVSMYSKHGNDGSDVLRAFQEVCDKNPKTWNAFIV--GLSNLD-EALLVM 86
L EV VGTAIV MYSK G + +AF+++ +KN +W+A I G++ L EAL ++
Sbjct: 486 LSAEVAVGTAIVDMYSKCGAI-EESRKAFEQILEKNTMSWSAMIAAYGMNGLGHEALALL 544
Query: 85 RKMLNYGIYPNFFTLSSVLKKC 20
+M YG+ PN T+ SVL C
Sbjct: 545 AEMKLYGLKPNAVTILSVLSAC 566
>XP_002274427.1 PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
chloroplastic [Vitis vinifera] CBI22625.3 unnamed
protein product, partial [Vitis vinifera]
Length = 880
Score = 58.9 bits (141), Expect = 3e-08
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = -3
Query: 256 LRNEVGVGTAIVSMYSKHGNDGSDVLRAFQEVCDKNPKTWNAFIVGLSN---LDEALLVM 86
L N+V VG ++V MY K N D +RAF+ + N +W + I G S +E++ V
Sbjct: 348 LENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVF 407
Query: 85 RKMLNYGIYPNFFTLSSVLKKC 20
M G+ PN FTLS++L C
Sbjct: 408 GAMQGVGVRPNSFTLSTILGAC 429
>GAU32340.1 hypothetical protein TSUD_43820 [Trifolium subterraneum]
Length = 630
Score = 58.5 bits (140), Expect = 4e-08
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Frame = -3
Query: 256 LRNEVGVGTAIVSMYSKHGNDGSDVLRAFQEVCDKNPKTWNAFIVGLSN---LDEALLVM 86
L N++ +G A+V MY K + ++ ++AF+E+ N +W + I G + +++ +
Sbjct: 354 LENDLYIGNALVDMYMKCSHSTTNAVKAFREIASPNVISWTSLIAGFAENGLEEQSFQLF 413
Query: 85 RKMLNYGIYPNFFTLSSVLKKCQK 14
+M G+ PNFFTLS++L C K
Sbjct: 414 SEMQAAGVQPNFFTLSTILGACSK 437
>KZM95565.1 hypothetical protein DCAR_018807 [Daucus carota subsp. sativus]
Length = 728
Score = 58.2 bits (139), Expect = 6e-08
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Frame = -3
Query: 256 LRNEVGVGTAIVSMYSKHGNDGSDVLRAFQEVCDKNPKTWNAFIVGLSN---LDEALLVM 86
L+N+V VG A+V MY K + L F+E+ N +W + + GL+ +E++
Sbjct: 348 LQNDVSVGNALVDMYMKCSYTVENALGVFKEISSPNVISWTSLVAGLAEHGFQEESMKAF 407
Query: 85 RKMLNYGIYPNFFTLSSVLKKC 20
+M++ G+ PN FTLSS+L C
Sbjct: 408 EEMISAGVQPNSFTLSSILWIC 429
>XP_008801421.1 PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
chloroplastic [Phoenix dactylifera]
Length = 844
Score = 58.2 bits (139), Expect = 6e-08
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = -3
Query: 256 LRNEVGVGTAIVSMYSKHGNDGSDVLRAFQEVCDKNPKTWNAFIVGL---SNLDEALLVM 86
L ++ VG A+V +Y+K D D +RAFQ + N +W A I L +AL +
Sbjct: 413 LEHDASVGNALVDLYAKWSPDLEDPVRAFQRIASPNVVSWTALIAALVRHGRHRDALAAL 472
Query: 85 RKMLNYGIYPNFFTLSSVLKKC 20
+M G+ PN FTLS++LK C
Sbjct: 473 TEMRAAGVEPNSFTLSTLLKGC 494
>XP_017249970.1 PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
chloroplastic [Daucus carota subsp. sativus]
XP_017249971.1 PREDICTED: pentatricopeptide
repeat-containing protein At5g52850, chloroplastic
[Daucus carota subsp. sativus]
Length = 880
Score = 58.2 bits (139), Expect = 6e-08
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Frame = -3
Query: 256 LRNEVGVGTAIVSMYSKHGNDGSDVLRAFQEVCDKNPKTWNAFIVGLSN---LDEALLVM 86
L+N+V VG A+V MY K + L F+E+ N +W + + GL+ +E++
Sbjct: 348 LQNDVSVGNALVDMYMKCSYTVENALGVFKEISSPNVISWTSLVAGLAEHGFQEESMKAF 407
Query: 85 RKMLNYGIYPNFFTLSSVLKKC 20
+M++ G+ PN FTLSS+L C
Sbjct: 408 EEMISAGVQPNSFTLSSILWIC 429
>XP_018474515.1 PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08490 isoform X2 [Raphanus sativus]
Length = 685
Score = 57.8 bits (138), Expect = 8e-08
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Frame = -3
Query: 256 LRNEVGVGTAIVSMYSKHGNDGSDVLRAFQEVCDKNPKTWNAFIVGLSN---LDEALLVM 86
L + VG A+VSMY+K G D AF + DK+ +WNAFI G S ++AL +
Sbjct: 155 LEKDTLVGNALVSMYAKCGFVLPDACTAFDSIADKDVVSWNAFIAGFSENSMKEDALRLF 214
Query: 85 RKMLNYGIYPNFFTLSSVLKKC 20
ML + PN+ T++++L C
Sbjct: 215 STMLKEPVEPNYATIANILPVC 236
>XP_006855329.2 PREDICTED: pentatricopeptide repeat-containing protein At2g27610
[Amborella trichopoda]
Length = 714
Score = 57.8 bits (138), Expect = 8e-08
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Frame = -3
Query: 238 VGTAIVSMYSKHGNDGSDVLRAFQEVCDKNPKTWNAFIVGLSNLD---EALLVMRKMLNY 68
VG A + MY+K G+ + + FQE+ ++N +WN I G + + +A+ ++ +MLN
Sbjct: 320 VGNAAIEMYAKCGSL-QESAKVFQEIVERNVVSWNVLITGYAQMGYCKDAIKLLVRMLNE 378
Query: 67 GIYPNFFTLSSVLKKC 20
GIYPN +T S VL C
Sbjct: 379 GIYPNLYTYSCVLSVC 394
>ERN16796.1 hypothetical protein AMTR_s00057p00087430 [Amborella trichopoda]
Length = 734
Score = 57.8 bits (138), Expect = 8e-08
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Frame = -3
Query: 238 VGTAIVSMYSKHGNDGSDVLRAFQEVCDKNPKTWNAFIVGLSNLD---EALLVMRKMLNY 68
VG A + MY+K G+ + + FQE+ ++N +WN I G + + +A+ ++ +MLN
Sbjct: 340 VGNAAIEMYAKCGSL-QESAKVFQEIVERNVVSWNVLITGYAQMGYCKDAIKLLVRMLNE 398
Query: 67 GIYPNFFTLSSVLKKC 20
GIYPN +T S VL C
Sbjct: 399 GIYPNLYTYSCVLSVC 414
>XP_013629565.1 PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08490 [Brassica oleracea var. oleracea]
Length = 850
Score = 57.8 bits (138), Expect = 8e-08
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = -3
Query: 256 LRNEVGVGTAIVSMYSKHGNDGSDVLRAFQEVCDKNPKTWNAFIVGLSNLD---EALLVM 86
L + VG A+VSMY+K G D AF + DK+ +WNAFI G S + AL +
Sbjct: 154 LEKDTLVGNALVSMYAKSGFVLPDAYAAFDSIADKDVVSWNAFIAGFSENNMKVNALRLF 213
Query: 85 RKMLNYGIYPNFFTLSSVLKKC 20
ML + PN+ T++++L C
Sbjct: 214 STMLKESVEPNYATIANILPVC 235
>XP_018474514.1 PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08490 isoform X1 [Raphanus sativus]
Length = 851
Score = 57.8 bits (138), Expect = 8e-08
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Frame = -3
Query: 256 LRNEVGVGTAIVSMYSKHGNDGSDVLRAFQEVCDKNPKTWNAFIVGLSN---LDEALLVM 86
L + VG A+VSMY+K G D AF + DK+ +WNAFI G S ++AL +
Sbjct: 155 LEKDTLVGNALVSMYAKCGFVLPDACTAFDSIADKDVVSWNAFIAGFSENSMKEDALRLF 214
Query: 85 RKMLNYGIYPNFFTLSSVLKKC 20
ML + PN+ T++++L C
Sbjct: 215 STMLKEPVEPNYATIANILPVC 236
>BAD67155.1 PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 57.8 bits (138), Expect = 8e-08
Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Frame = -3
Query: 247 EVGVGTAIVSMYSKHGNDGSDVLRAFQEVCDKNPKTWNAFIVGLSN---LDEALLVMRKM 77
E+ VGTAI+SMY+K G+ D L F V +N +W A I G + +DEA L KM
Sbjct: 346 EIYVGTAILSMYTKCGSM-EDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKM 404
Query: 76 LNYGIYPNFFTLSSVLKKC 20
+ GI PN T S+L C
Sbjct: 405 IESGIEPNRVTFMSILGAC 423
>XP_001780298.1 predicted protein [Physcomitrella patens] EDQ54857.1 predicted
protein [Physcomitrella patens]
Length = 986
Score = 57.8 bits (138), Expect = 8e-08
Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Frame = -3
Query: 247 EVGVGTAIVSMYSKHGNDGSDVLRAFQEVCDKNPKTWNAFIVGLSN---LDEALLVMRKM 77
E+ VGTAI+SMY+K G+ D L F V +N +W A I G + +DEA L KM
Sbjct: 346 EIYVGTAILSMYTKCGSM-EDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKM 404
Query: 76 LNYGIYPNFFTLSSVLKKC 20
+ GI PN T S+L C
Sbjct: 405 IESGIEPNRVTFMSILGAC 423
Database: ./nr
Posted date: Mar 21, 2017 10:06 AM
Number of letters in database: 42,171,959,267
Number of sequences in database: 115,041,592
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115041592
Number of Hits to DB: 287,209,172,152,364
Number of extensions: 202876322
Number of successful extensions: 1001866563
Number of sequences better than 1.0e-05: 39024695
Number of HSP's gapped: 879454185
Number of HSP's successfully gapped: 60903950
Length of database: 42,171,959,267
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 28 (15.4 bits)