BLASTX nr result
ID: Ephedra29_contig00027752
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra29_contig00027752
(292 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJA90770.1 RNA-dependent RNA polymerase 2 [Ephedra trifurca] 187 5e-53
AJA90786.1 RNA-dependent RNA polymerase 2 [Pinus canariensis] 129 1e-32
AJP06346.1 RDR2 [Pinus tabuliformis] 126 1e-31
AJA90762.1 RNA-dependent RNA polymerase 2 [Cycas revoluta] 122 2e-30
AJA90778.1 RNA-dependent RNA polymerase 2 [Ginkgo biloba] 122 3e-30
XP_019703492.1 PREDICTED: probable RNA-dependent RNA polymerase ... 116 3e-28
AIO05709.1 RNA-dependent RNA polymerase 2, partial [Cocos nucifera] 115 5e-28
XP_008780950.1 PREDICTED: probable RNA-dependent RNA polymerase ... 114 2e-27
XP_006836643.1 PREDICTED: RNA-dependent RNA polymerase 2 [Ambore... 112 6e-27
OMO81567.1 RNA-dependent RNA polymerase, eukaryotic-type, partia... 110 3e-26
KNA17291.1 hypothetical protein SOVF_081360 [Spinacia oleracea] 110 5e-26
XP_008453109.1 PREDICTED: RNA-dependent RNA polymerase 2 [Cucumi... 109 7e-26
XP_006345040.1 PREDICTED: RNA-dependent RNA polymerase 2 [Solanu... 109 7e-26
XP_004298927.1 PREDICTED: RNA-dependent RNA polymerase 2 [Fragar... 109 7e-26
XP_017227942.1 PREDICTED: RNA-dependent RNA polymerase 2-like [D... 109 9e-26
KZM81081.1 hypothetical protein DCAR_031305 [Daucus carota subsp... 109 9e-26
XP_009381640.1 PREDICTED: probable RNA-dependent RNA polymerase ... 108 1e-25
XP_010678731.1 PREDICTED: RNA-dependent RNA polymerase 2 [Beta v... 108 1e-25
XP_004236120.1 PREDICTED: RNA-dependent RNA polymerase 2 [Solanu... 108 1e-25
XP_019243714.1 PREDICTED: RNA-dependent RNA polymerase 2 [Nicoti... 108 1e-25
>AJA90770.1 RNA-dependent RNA polymerase 2 [Ephedra trifurca]
Length = 1111
Score = 187 bits (474), Expect = 5e-53
Identities = 94/97 (96%), Positives = 94/97 (96%)
Frame = +2
Query: 2 LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKL 181
LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKL
Sbjct: 365 LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKL 424
Query: 182 KTEQDILERPRRTNVYERIIDILNNGIVINNKRFEFL 292
KTEQDILERP RTNVYERII ILNNGI INNKRFEFL
Sbjct: 425 KTEQDILERPCRTNVYERIIAILNNGIFINNKRFEFL 461
>AJA90786.1 RNA-dependent RNA polymerase 2 [Pinus canariensis]
Length = 1114
Score = 129 bits (323), Expect = 1e-32
Identities = 62/97 (63%), Positives = 78/97 (80%)
Frame = +2
Query: 2 LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKL 181
+M+F+R LVTPSKVYF+GPELN SNRVTRHF+++ DF+RVSFVDED +LH+NALT KL
Sbjct: 365 IMKFHRALVTPSKVYFLGPELNVSNRVTRHFAEYIDDFLRVSFVDEDWNKLHSNALTSKL 424
Query: 182 KTEQDILERPRRTNVYERIIDILNNGIVINNKRFEFL 292
E L +P+RT VY RI+ IL +GIV+ K+FEFL
Sbjct: 425 --EYGFLAKPQRTKVYNRILSILKDGIVVGKKKFEFL 459
>AJP06346.1 RDR2 [Pinus tabuliformis]
Length = 1123
Score = 126 bits (316), Expect = 1e-31
Identities = 61/97 (62%), Positives = 78/97 (80%)
Frame = +2
Query: 2 LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKL 181
+M+F+R LVTPSKVYF+GPELN SNRVTRHF+++ DF+RVSFVDED +LH+NALT KL
Sbjct: 365 IMKFHRALVTPSKVYFLGPELNVSNRVTRHFAEYIDDFLRVSFVDEDWNKLHSNALTSKL 424
Query: 182 KTEQDILERPRRTNVYERIIDILNNGIVINNKRFEFL 292
E L + +RT VY+RI+ IL +GIV+ K+FEFL
Sbjct: 425 --EYGFLAKRQRTKVYDRILSILKDGIVVGKKKFEFL 459
>AJA90762.1 RNA-dependent RNA polymerase 2 [Cycas revoluta]
Length = 1117
Score = 122 bits (306), Expect = 2e-30
Identities = 60/97 (61%), Positives = 75/97 (77%)
Frame = +2
Query: 2 LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKL 181
LM F+RVLVTP+KVYF+GPELN SN VTR ++ + DF+RVSFVDED +LH+ AL+V
Sbjct: 368 LMNFHRVLVTPAKVYFLGPELNVSNCVTRQYAKYIDDFLRVSFVDEDWNKLHSTALSV-- 425
Query: 182 KTEQDILERPRRTNVYERIIDILNNGIVINNKRFEFL 292
KTE +L +P RT +Y RI+ +L GIVI NKRFEFL
Sbjct: 426 KTEYGLLAKPLRTEIYRRILSVLKEGIVIGNKRFEFL 462
>AJA90778.1 RNA-dependent RNA polymerase 2 [Ginkgo biloba]
Length = 1114
Score = 122 bits (305), Expect = 3e-30
Identities = 60/97 (61%), Positives = 77/97 (79%)
Frame = +2
Query: 2 LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKL 181
LM F+RVLVTPSKVYF+GPELN SN VTR F+++ DF+RVSFVDED +LH+ AL+ L
Sbjct: 370 LMNFHRVLVTPSKVYFLGPELNVSNCVTRQFANYMDDFLRVSFVDEDWNKLHSTALS--L 427
Query: 182 KTEQDILERPRRTNVYERIIDILNNGIVINNKRFEFL 292
KT+ +L RP +T ++ RI+ IL GI+IN+KRFEFL
Sbjct: 428 KTDCGLLARPHKTEIHNRILSILKEGILINSKRFEFL 464
>XP_019703492.1 PREDICTED: probable RNA-dependent RNA polymerase 2 [Elaeis
guineensis]
Length = 1117
Score = 116 bits (290), Expect = 3e-28
Identities = 56/97 (57%), Positives = 75/97 (77%)
Frame = +2
Query: 2 LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKL 181
+M +RVLVTPSKVYF+GPEL SN V RH+S++ASDFIRVSFV+ED G+L +A++ +
Sbjct: 366 IMSCHRVLVTPSKVYFLGPELETSNYVIRHYSEYASDFIRVSFVEEDWGKLSFDAISTSI 425
Query: 182 KTEQDILERPRRTNVYERIIDILNNGIVINNKRFEFL 292
EQ + +P RT +Y RI+ IL +GIVI +K+FEFL
Sbjct: 426 --EQGVFSKPYRTGIYNRILSILKDGIVIGSKKFEFL 460
>AIO05709.1 RNA-dependent RNA polymerase 2, partial [Cocos nucifera]
Length = 618
Score = 115 bits (288), Expect = 5e-28
Identities = 54/97 (55%), Positives = 76/97 (78%)
Frame = +2
Query: 2 LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKL 181
+M +RVLVTPSKVYF+GPEL SN V +H+S++ASDFIRVSF++ED G+L +A++ +
Sbjct: 127 IMSCHRVLVTPSKVYFLGPELETSNYVIKHYSEYASDFIRVSFIEEDWGKLSFDAISTSI 186
Query: 182 KTEQDILERPRRTNVYERIIDILNNGIVINNKRFEFL 292
EQ + +P RT +Y+RI+ IL +GIVI +K+FEFL
Sbjct: 187 --EQGVFSKPYRTGIYDRILSILKDGIVIGSKKFEFL 221
>XP_008780950.1 PREDICTED: probable RNA-dependent RNA polymerase 2 [Phoenix
dactylifera]
Length = 1117
Score = 114 bits (284), Expect = 2e-27
Identities = 55/97 (56%), Positives = 75/97 (77%)
Frame = +2
Query: 2 LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKL 181
+M +RVLVTPSKVYF GPEL SN V +H+S++ASDFIRVSFV+ED G+L ++A++ +
Sbjct: 366 IMGCHRVLVTPSKVYFFGPELETSNYVVKHYSEYASDFIRVSFVEEDWGKLSSDAISPSI 425
Query: 182 KTEQDILERPRRTNVYERIIDILNNGIVINNKRFEFL 292
EQ + +P RT +Y RI+ IL +GIVI +K+FEFL
Sbjct: 426 --EQGLFSKPYRTGIYNRILSILRDGIVIGSKKFEFL 460
>XP_006836643.1 PREDICTED: RNA-dependent RNA polymerase 2 [Amborella trichopoda]
ERM99496.1 hypothetical protein AMTR_s00088p00026960
[Amborella trichopoda]
Length = 1107
Score = 112 bits (281), Expect = 6e-27
Identities = 54/97 (55%), Positives = 73/97 (75%)
Frame = +2
Query: 2 LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKL 181
LM +R LVTPSKVYF+GPEL SN + +HF+ +A DF+RVSFVDED +L ++AL+ KL
Sbjct: 363 LMNCHRALVTPSKVYFLGPELETSNYIVKHFAAYADDFLRVSFVDEDWSKLPSDALSPKL 422
Query: 182 KTEQDILERPRRTNVYERIIDILNNGIVINNKRFEFL 292
E +P RTN+Y+RI+ +L +GIV+ +KRFEFL
Sbjct: 423 --ESGFFAKPYRTNIYKRIVSVLRDGIVLGSKRFEFL 457
>OMO81567.1 RNA-dependent RNA polymerase, eukaryotic-type, partial [Corchorus
capsularis]
Length = 1490
Score = 110 bits (276), Expect = 3e-26
Identities = 52/97 (53%), Positives = 73/97 (75%)
Frame = +2
Query: 2 LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKL 181
+M +R LVTPSK+Y GPEL +SN V +HF+++ASDF+RV+FV+ED +L ANA++ +
Sbjct: 449 VMSCHRALVTPSKIYCFGPELEKSNYVVKHFAEYASDFMRVTFVEEDWSKLSANAISTSI 508
Query: 182 KTEQDILERPRRTNVYERIIDILNNGIVINNKRFEFL 292
+ IL +P RT +Y RI+ +L NGIVI +KRFEFL
Sbjct: 509 --QLGILPKPSRTKIYHRILSVLQNGIVIGDKRFEFL 543
>KNA17291.1 hypothetical protein SOVF_081360 [Spinacia oleracea]
Length = 1116
Score = 110 bits (274), Expect = 5e-26
Identities = 54/97 (55%), Positives = 72/97 (74%)
Frame = +2
Query: 2 LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKL 181
+M+ +R LVTP+K+ +GPEL SN + ++FS H SDF+RV+FVDED G+LH A++V
Sbjct: 373 IMRCHRALVTPTKICLLGPELEASNYIVKNFSAHTSDFMRVTFVDEDWGKLHPMAVSV-- 430
Query: 182 KTEQDILERPRRTNVYERIIDILNNGIVINNKRFEFL 292
TEQ I +P RT+VY RI+ IL GIVI +KRFEFL
Sbjct: 431 STEQGIFSKPFRTDVYHRILSILREGIVIGDKRFEFL 467
>XP_008453109.1 PREDICTED: RNA-dependent RNA polymerase 2 [Cucumis melo]
Length = 1117
Score = 109 bits (273), Expect = 7e-26
Identities = 54/97 (55%), Positives = 73/97 (75%)
Frame = +2
Query: 2 LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKL 181
+M YRVLVTPS++Y +GPEL SN V ++FS +ASDF+RV+FV+ED +L A A+T +
Sbjct: 370 VMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAGAVTTSI 429
Query: 182 KTEQDILERPRRTNVYERIIDILNNGIVINNKRFEFL 292
++ IL +P RTN+Y RI+ IL +GIVI KRFEFL
Sbjct: 430 --QRGILSKPYRTNIYHRIVTILRDGIVIGAKRFEFL 464
>XP_006345040.1 PREDICTED: RNA-dependent RNA polymerase 2 [Solanum tuberosum]
Length = 1119
Score = 109 bits (273), Expect = 7e-26
Identities = 53/97 (54%), Positives = 70/97 (72%)
Frame = +2
Query: 2 LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKL 181
+M +RVLVTPSK+Y +GPEL SN + ++F++HASDF+RV+FV+ED G+L NA V +
Sbjct: 372 MMSVHRVLVTPSKIYCLGPELETSNYIVKNFAEHASDFLRVTFVEEDWGKLFPNA--VSM 429
Query: 182 KTEQDILERPRRTNVYERIIDILNNGIVINNKRFEFL 292
EQ I +P RT +Y RI+ IL GIVI KRF FL
Sbjct: 430 SVEQGIFAKPYRTKIYHRILSILREGIVIGTKRFFFL 466
>XP_004298927.1 PREDICTED: RNA-dependent RNA polymerase 2 [Fragaria vesca subsp.
vesca]
Length = 1136
Score = 109 bits (273), Expect = 7e-26
Identities = 52/97 (53%), Positives = 74/97 (76%)
Frame = +2
Query: 2 LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKL 181
+M +RVL+TPSK+Y +GPEL +SN V ++F+ +ASDF+RV+FV+ED G+L NAL+ +
Sbjct: 373 VMSCHRVLITPSKIYCLGPELEKSNYVVKNFAQYASDFMRVTFVEEDWGKLPVNALSTSI 432
Query: 182 KTEQDILERPRRTNVYERIIDILNNGIVINNKRFEFL 292
EQ +P RT +Y+RI+ IL +GIVI +KRFEFL
Sbjct: 433 --EQGFFAKPFRTGIYQRILSILRDGIVIGDKRFEFL 467
>XP_017227942.1 PREDICTED: RNA-dependent RNA polymerase 2-like [Daucus carota
subsp. sativus]
Length = 1118
Score = 109 bits (272), Expect = 9e-26
Identities = 51/97 (52%), Positives = 73/97 (75%)
Frame = +2
Query: 2 LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKL 181
+M +RVL+TPSK+Y +GPEL S+ V ++FS +ASDF+RV+FVDEDLG+LH + TV
Sbjct: 374 VMSCHRVLITPSKIYCLGPELESSSYVVKNFSSYASDFLRVTFVDEDLGKLHPH--TVSA 431
Query: 182 KTEQDILERPRRTNVYERIIDILNNGIVINNKRFEFL 292
T++ I +P RT++Y R++ +L GIVI KRF+FL
Sbjct: 432 STQKGIFAKPCRTSIYHRVLSVLREGIVIGAKRFQFL 468
>KZM81081.1 hypothetical protein DCAR_031305 [Daucus carota subsp. sativus]
Length = 1325
Score = 109 bits (272), Expect = 9e-26
Identities = 51/97 (52%), Positives = 73/97 (75%)
Frame = +2
Query: 2 LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKL 181
+M +RVL+TPSK+Y +GPEL S+ V ++FS +ASDF+RV+FVDEDLG+LH + TV
Sbjct: 374 VMSCHRVLITPSKIYCLGPELESSSYVVKNFSSYASDFLRVTFVDEDLGKLHPH--TVSA 431
Query: 182 KTEQDILERPRRTNVYERIIDILNNGIVINNKRFEFL 292
T++ I +P RT++Y R++ +L GIVI KRF+FL
Sbjct: 432 STQKGIFAKPCRTSIYHRVLSVLREGIVIGAKRFQFL 468
>XP_009381640.1 PREDICTED: probable RNA-dependent RNA polymerase 2 [Musa acuminata
subsp. malaccensis]
Length = 1106
Score = 108 bits (271), Expect = 1e-25
Identities = 52/97 (53%), Positives = 74/97 (76%)
Frame = +2
Query: 2 LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKL 181
LM YRVLVTP+KVY +GPEL SN V +HFS +ASDF+RVSFVDED +L ++A++V +
Sbjct: 365 LMSCYRVLVTPTKVYCLGPELETSNYVVKHFSTNASDFLRVSFVDEDWSKLPSDAISVTI 424
Query: 182 KTEQDILERPRRTNVYERIIDILNNGIVINNKRFEFL 292
+++ L +P RT +Y RI+ +L +G+ I +K+FEFL
Sbjct: 425 --DRNFLSKPHRTGIYTRILSVLKDGLHIGSKKFEFL 459
>XP_010678731.1 PREDICTED: RNA-dependent RNA polymerase 2 [Beta vulgaris subsp.
vulgaris] KMT10542.1 hypothetical protein BVRB_5g116660
[Beta vulgaris subsp. vulgaris]
Length = 1116
Score = 108 bits (271), Expect = 1e-25
Identities = 53/97 (54%), Positives = 71/97 (73%)
Frame = +2
Query: 2 LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKL 181
+M+ +R LVTP+K+ +GPEL SN V ++F+ ++SDF+RV+FVDED GRLH + V
Sbjct: 373 IMRCHRALVTPTKICLLGPELESSNYVVKNFAAYSSDFMRVTFVDEDWGRLH--PIVVSA 430
Query: 182 KTEQDILERPRRTNVYERIIDILNNGIVINNKRFEFL 292
TEQ I +P RT++Y RI+ IL GIVI NKRFEFL
Sbjct: 431 STEQGIFSKPFRTDIYHRILSILREGIVIGNKRFEFL 467
>XP_004236120.1 PREDICTED: RNA-dependent RNA polymerase 2 [Solanum lycopersicum]
Length = 1119
Score = 108 bits (271), Expect = 1e-25
Identities = 53/97 (54%), Positives = 69/97 (71%)
Frame = +2
Query: 2 LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKL 181
+M +RVLVTPSK+Y +GPEL SN + ++F+ HASDF+RV+FV+ED G+L NA V +
Sbjct: 372 MMSVHRVLVTPSKIYCLGPELETSNYIVKNFASHASDFLRVTFVEEDWGKLFPNA--VSM 429
Query: 182 KTEQDILERPRRTNVYERIIDILNNGIVINNKRFEFL 292
EQ I +P RT +Y RI+ IL GIVI KRF FL
Sbjct: 430 SVEQGIFAKPYRTKIYHRILSILREGIVIGTKRFFFL 466
>XP_019243714.1 PREDICTED: RNA-dependent RNA polymerase 2 [Nicotiana attenuata]
OIT04938.1 rna-dependent rna polymerase 2 [Nicotiana
attenuata]
Length = 1120
Score = 108 bits (271), Expect = 1e-25
Identities = 52/97 (53%), Positives = 71/97 (73%)
Frame = +2
Query: 2 LMQFYRVLVTPSKVYFIGPELNRSNRVTRHFSDHASDFIRVSFVDEDLGRLHANALTVKL 181
+M +RVLVTPSKVY +GPEL SN + ++F+ HASDF+RV+FV+ED G+L NA + +
Sbjct: 373 MMSVHRVLVTPSKVYCLGPELETSNYIVKNFASHASDFLRVTFVEEDWGKLSPNA--ISM 430
Query: 182 KTEQDILERPRRTNVYERIIDILNNGIVINNKRFEFL 292
EQ I +P RT +Y RI+ IL +G+VI +KRF FL
Sbjct: 431 SVEQGIFAKPYRTKIYHRILSILRDGLVIGSKRFLFL 467