BLASTX nr result
ID: Ephedra29_contig00027402
seq
BLASTX 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ephedra29_contig00027402 (324 letters) Database: ./nr 115,041,592 sequences; 42,171,959,267 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AJA90770.1 RNA-dependent RNA polymerase 2 [Ephedra trifurca] 197 2e-56 AJP06346.1 RDR2 [Pinus tabuliformis] 93 6e-20 AJA90762.1 RNA-dependent RNA polymerase 2 [Cycas revoluta] 93 9e-20 AJA90786.1 RNA-dependent RNA polymerase 2 [Pinus canariensis] 92 2e-19 AJA90778.1 RNA-dependent RNA polymerase 2 [Ginkgo biloba] 81 1e-15 XP_002311535.2 hypothetical protein POPTR_0008s13520g [Populus t... 72 2e-12 EOY01387.1 Rna-dependent RNA polymerase, putative [Theobroma cacao] 69 2e-11 XP_003518619.1 PREDICTED: RNA-dependent RNA polymerase 1 [Glycin... 69 3e-11 OMO72380.1 RNA-dependent RNA polymerase, eukaryotic-type [Corcho... 68 4e-11 XP_013466604.1 RNA-directed RNA polymerase [Medicago truncatula]... 67 7e-11 XP_013466603.1 RNA-directed RNA polymerase [Medicago truncatula]... 67 7e-11 OMO89431.1 RNA-dependent RNA polymerase, eukaryotic-type [Corcho... 67 7e-11 XP_007045555.2 PREDICTED: probable RNA-dependent RNA polymerase ... 66 2e-10 XP_018856654.1 PREDICTED: RNA-dependent RNA polymerase 1 [Juglan... 66 2e-10 XP_011028096.1 PREDICTED: probable RNA-dependent RNA polymerase ... 65 6e-10 XP_011625384.1 PREDICTED: probable RNA-dependent RNA polymerase ... 64 9e-10 ERN11375.1 hypothetical protein AMTR_s00176p00039530 [Amborella ... 64 9e-10 CBI26821.3 unnamed protein product, partial [Vitis vinifera] 64 1e-09 XP_011463162.1 PREDICTED: probable RNA-dependent RNA polymerase ... 64 1e-09 XP_002281315.1 PREDICTED: probable RNA-dependent RNA polymerase ... 64 1e-09 >AJA90770.1 RNA-dependent RNA polymerase 2 [Ephedra trifurca] Length = 1111 Score = 197 bits (500), Expect = 2e-56 Identities = 98/107 (91%), Positives = 100/107 (93%) Frame = -2 Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144 VGQASVFCLDF NGRKHPAFVENLPFFEMMQDELLMENDVLLSP P+LVPYVRV DGVTL Sbjct: 219 VGQASVFCLDFGNGRKHPAFVENLPFFEMMQDELLMENDVLLSPCPYLVPYVRVPDGVTL 278 Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3 PYDIAFKLNSLVHH IL APTLT EFF+VLTN NYSPLHINIALSEL Sbjct: 279 PYDIAFKLNSLVHHGILSAPTLTSEFFDVLTNHNYSPLHINIALSEL 325 >AJP06346.1 RDR2 [Pinus tabuliformis] Length = 1123 Score = 93.2 bits (230), Expect = 6e-20 Identities = 43/107 (40%), Positives = 69/107 (64%) Frame = -2 Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144 +GQA+ FC++ + + +E++P+ E M+DE+ +EN PF H+VP + + V L Sbjct: 220 IGQATSFCIELPSTVELAHIIESMPYHEEMEDEITLENGTSFFPFAHMVPSLNAPEDVNL 279 Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3 Y I F+++SL+H+ IL PTL+ EFF++L N LHI +AL+EL Sbjct: 280 SYQIYFQISSLIHYGILSGPTLSREFFDLLQNDKTPDLHIRLALAEL 326 >AJA90762.1 RNA-dependent RNA polymerase 2 [Cycas revoluta] Length = 1117 Score = 92.8 bits (229), Expect = 9e-20 Identities = 45/107 (42%), Positives = 69/107 (64%) Frame = -2 Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144 +GQ++ FCL+ G + E LP++ M++EL +EN + +S +VP + +GV L Sbjct: 223 IGQSTSFCLELPYGVEVAQITEILPYYRSMEEELTLENGISISSSLSMVPIINAPEGVNL 282 Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3 PY+I F++NSLVH IL PTL EFF++L + +HIN+AL+EL Sbjct: 283 PYEIMFQVNSLVHRGILSLPTLCPEFFDLLRHDRTPLVHINLALTEL 329 >AJA90786.1 RNA-dependent RNA polymerase 2 [Pinus canariensis] Length = 1114 Score = 91.7 bits (226), Expect = 2e-19 Identities = 43/107 (40%), Positives = 68/107 (63%) Frame = -2 Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144 +GQA+ FC++ + +E++P+ E M+DE+ +EN PF H+VP + + V L Sbjct: 220 IGQATSFCIELPSTVGLAHIIESMPYHEEMEDEITLENGTSFFPFAHIVPSLSAPEDVNL 279 Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3 Y I F+++SL+H+ IL PTL+ EFF++L N LHI +AL+EL Sbjct: 280 SYQIYFQISSLIHYGILSGPTLSREFFDLLQNDKTPDLHIRLALAEL 326 >AJA90778.1 RNA-dependent RNA polymerase 2 [Ginkgo biloba] Length = 1114 Score = 80.9 bits (198), Expect = 1e-15 Identities = 40/107 (37%), Positives = 63/107 (58%) Frame = -2 Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144 +GQ+S FCL+ NG + E++P ++ +++EL +E S LVP V + V L Sbjct: 225 IGQSSAFCLELPNGVEVAHITESMPHYKALEEELTLEYGSSFSSSQSLVPIVNAPNDVNL 284 Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3 Y F++NSL+H IL PTL EF+++L + +H N+AL+EL Sbjct: 285 SYQTVFQINSLIHRGILSGPTLCQEFYDLLRSDRTPLVHTNLALTEL 331 >XP_002311535.2 hypothetical protein POPTR_0008s13520g [Populus trichocarpa] EEE88902.2 hypothetical protein POPTR_0008s13520g [Populus trichocarpa] Length = 1139 Score = 71.6 bits (174), Expect = 2e-12 Identities = 37/107 (34%), Positives = 53/107 (49%) Frame = -2 Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144 +GQ+S CL+ + P F EN P ++ + +E LVP +R G+ L Sbjct: 230 IGQSSALCLELPRSGQLPNFQENFPCYKEDEGRFFLEVGSTFCRVSDLVPILREAQGIEL 289 Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3 PYDI FK+NSLV H L P L F+ ++ + HI AL +L Sbjct: 290 PYDIVFKVNSLVQHGYLPGPALDASFYRLINPSRVNIAHIQNALEKL 336 >EOY01387.1 Rna-dependent RNA polymerase, putative [Theobroma cacao] Length = 1125 Score = 68.9 bits (167), Expect = 2e-11 Identities = 38/106 (35%), Positives = 57/106 (53%) Frame = -2 Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144 +GQ+ CL+ G K P F E+ ++ ++D ++EN S P LVP + +G L Sbjct: 216 IGQSFALCLELPRGVKLPKFDESF-YYRKVEDNFILENGSSFSCNPDLVPMITPPEGFDL 274 Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSE 6 PY + FK+NSLV H L PTL +F+ ++ P I+IA E Sbjct: 275 PYGVLFKVNSLVQHGCLLPPTLDADFYQLV-----DPRRIDIAFIE 315 >XP_003518619.1 PREDICTED: RNA-dependent RNA polymerase 1 [Glycine max] XP_006574822.1 PREDICTED: RNA-dependent RNA polymerase 1 [Glycine max] XP_006574823.1 PREDICTED: RNA-dependent RNA polymerase 1 [Glycine max] KHN15461.1 RNA-dependent RNA polymerase 1 [Glycine soja] KRH70363.1 hypothetical protein GLYMA_02G086100 [Glycine max] Length = 1125 Score = 68.6 bits (166), Expect = 3e-11 Identities = 38/97 (39%), Positives = 53/97 (54%) Frame = -2 Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144 +GQ+S CL+ NGR+ P F EN ++E + + ++ V S LVP V GV + Sbjct: 222 IGQSSAICLELPNGRQLPNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKI 281 Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSP 33 YDI FK+NSLV H L P L +F+ L +P P Sbjct: 282 SYDILFKVNSLVQHACLAGPALDGDFYR-LVDPRRMP 317 >OMO72380.1 RNA-dependent RNA polymerase, eukaryotic-type [Corchorus olitorius] Length = 1138 Score = 68.2 bits (165), Expect = 4e-11 Identities = 38/107 (35%), Positives = 56/107 (52%) Frame = -2 Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144 +GQ+ CL+ G K P F +N +++ ++D+ +E + S P LVP + G L Sbjct: 215 IGQSFGLCLELPRGVKLPKFDQNF-YYKKVEDKFSLEKGSIFSSNPVLVPIIVPPQGFDL 273 Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3 PY I FK+NSLV H L PTL FF ++ + I AL +L Sbjct: 274 PYSILFKVNSLVQHGCLPVPTLDANFFKLIDPSRINSAFIEHALEKL 320 >XP_013466604.1 RNA-directed RNA polymerase [Medicago truncatula] KEH40644.1 RNA-directed RNA polymerase [Medicago truncatula] Length = 789 Score = 67.4 bits (163), Expect = 7e-11 Identities = 36/104 (34%), Positives = 56/104 (53%) Frame = -2 Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144 +GQ+S CL+ + R P F EN +E ++ + +E+ S P +VP V G+ + Sbjct: 221 IGQSSAICLELSSNRDFPNFKENCVHYEEIEGQYTLESGSSFSCNPDVVPMVAPPQGIQI 280 Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIAL 12 P+DI FK+NSLV H L L +F+ ++ PL IN+ L Sbjct: 281 PFDILFKVNSLVQHGCLSGSELDNDFYRLV-----DPLGINVEL 319 >XP_013466603.1 RNA-directed RNA polymerase [Medicago truncatula] KEH40645.1 RNA-directed RNA polymerase [Medicago truncatula] Length = 1114 Score = 67.4 bits (163), Expect = 7e-11 Identities = 36/104 (34%), Positives = 56/104 (53%) Frame = -2 Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144 +GQ+S CL+ + R P F EN +E ++ + +E+ S P +VP V G+ + Sbjct: 221 IGQSSAICLELSSNRDFPNFKENCVHYEEIEGQYTLESGSSFSCNPDVVPMVAPPQGIQI 280 Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIAL 12 P+DI FK+NSLV H L L +F+ ++ PL IN+ L Sbjct: 281 PFDILFKVNSLVQHGCLSGSELDNDFYRLV-----DPLGINVEL 319 >OMO89431.1 RNA-dependent RNA polymerase, eukaryotic-type [Corchorus capsularis] Length = 1288 Score = 67.4 bits (163), Expect = 7e-11 Identities = 38/107 (35%), Positives = 56/107 (52%) Frame = -2 Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144 +GQ+ CL+ G K P F +N +++ ++D+ +E + S P LVP + G L Sbjct: 215 IGQSFGLCLELPRGVKLPKFDQNF-YYKKVEDKFSLEKGSVFSSNPVLVPIIVPPQGFDL 273 Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3 PY I FK+NSLV H L PTL FF ++ + I AL +L Sbjct: 274 PYSILFKVNSLVQHGCLPVPTLDANFFKLVDPSRINTAFIEHALEKL 320 >XP_007045555.2 PREDICTED: probable RNA-dependent RNA polymerase 1 [Theobroma cacao] Length = 1125 Score = 66.2 bits (160), Expect = 2e-10 Identities = 37/106 (34%), Positives = 56/106 (52%) Frame = -2 Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144 +GQ+ CL+ G K P E+ ++ ++D ++EN S P LVP + +G L Sbjct: 216 IGQSFALCLELPRGVKLPKVDESF-YYRKVEDNFILENGSSFSCNPDLVPMITPPEGFDL 274 Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSE 6 PY + FK+NSLV H L PTL +F+ ++ P I+IA E Sbjct: 275 PYGVLFKVNSLVQHGCLLPPTLDADFYQLV-----DPRRIDIAFIE 315 >XP_018856654.1 PREDICTED: RNA-dependent RNA polymerase 1 [Juglans regia] XP_018856655.1 PREDICTED: RNA-dependent RNA polymerase 1 [Juglans regia] XP_018856657.1 PREDICTED: RNA-dependent RNA polymerase 1 [Juglans regia] Length = 1131 Score = 66.2 bits (160), Expect = 2e-10 Identities = 36/93 (38%), Positives = 52/93 (55%) Frame = -2 Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144 +GQ+S CL+ +G + P F EN +++ + ++E+ S LVP V GV L Sbjct: 219 IGQSSSLCLELPHGHQLPDFRENFAYYKESEGRYILESGSTFSCNLDLVPIVGPSPGVDL 278 Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNP 45 PY+I FK+NSLV + L PTL F+ L NP Sbjct: 279 PYEILFKINSLVQNGCLAGPTLDVRFYR-LVNP 310 >XP_011028096.1 PREDICTED: probable RNA-dependent RNA polymerase 1 [Populus euphratica] Length = 1144 Score = 64.7 bits (156), Expect = 6e-10 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 1/108 (0%) Frame = -2 Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLME-NDVLLSPFPHLVPYVRVLDGVT 147 +GQ+S CL+ + P+F EN P ++ + +E LVP + G+ Sbjct: 236 IGQSSALCLELPRSGQLPSFQENFPCYKEDEGRFSLELGSTFCRGHSDLVPILSETQGIE 295 Query: 146 LPYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3 LPYDI FK+NSLV H L P L F+ ++ +I AL +L Sbjct: 296 LPYDIVFKVNSLVQHGYLPGPALDASFYRLINPSRVKIAYIQHALEKL 343 >XP_011625384.1 PREDICTED: probable RNA-dependent RNA polymerase 1 [Amborella trichopoda] Length = 1140 Score = 64.3 bits (155), Expect = 9e-10 Identities = 34/90 (37%), Positives = 49/90 (54%) Frame = -2 Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144 +GQ+S CL NG + P EN +++ + ++ S HLVP V D + L Sbjct: 225 IGQSSSLCLALPNGTRIPNIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKL 284 Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVL 54 PY I F++NSLV + L PTL EF+N+L Sbjct: 285 PYKILFRVNSLVQNGFLVGPTLDTEFYNLL 314 >ERN11375.1 hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda] Length = 1210 Score = 64.3 bits (155), Expect = 9e-10 Identities = 34/90 (37%), Positives = 49/90 (54%) Frame = -2 Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144 +GQ+S CL NG + P EN +++ + ++ S HLVP V D + L Sbjct: 295 IGQSSSLCLALPNGTRIPNIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKL 354 Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVL 54 PY I F++NSLV + L PTL EF+N+L Sbjct: 355 PYKILFRVNSLVQNGFLVGPTLDTEFYNLL 384 >CBI26821.3 unnamed protein product, partial [Vitis vinifera] Length = 943 Score = 63.9 bits (154), Expect = 1e-09 Identities = 37/106 (34%), Positives = 54/106 (50%) Frame = -2 Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144 +GQ+S CL+ +G + P F EN ++ + ++E+ S HLVP V G L Sbjct: 176 IGQSSALCLELPHGSQLPNFCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNL 235 Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSE 6 P+ I FK+N+LV + L PTL FF + P INI+ E Sbjct: 236 PFKILFKINTLVQNGCLSGPTLDTNFFRWV-----DPQRINISFIE 276 >XP_011463162.1 PREDICTED: probable RNA-dependent RNA polymerase 1 isoform X2 [Fragaria vesca subsp. vesca] Length = 1089 Score = 63.9 bits (154), Expect = 1e-09 Identities = 37/107 (34%), Positives = 53/107 (49%) Frame = -2 Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144 +GQ+S CL + + P F EN +++ + ++EN S LVP V G+ L Sbjct: 184 IGQSSSLCLVLTSDGELPDFEENFAYYKKTDGQFILENGSTFSRNRDLVPIVGSPAGIDL 243 Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3 PYDI FK+N LV L PTL F+ ++ S I AL +L Sbjct: 244 PYDILFKINLLVQQGCLSGPTLDNNFYRLVDPRRISRPCIEFALDKL 290 >XP_002281315.1 PREDICTED: probable RNA-dependent RNA polymerase 1 [Vitis vinifera] XP_010650995.1 PREDICTED: probable RNA-dependent RNA polymerase 1 [Vitis vinifera] Length = 1109 Score = 63.9 bits (154), Expect = 1e-09 Identities = 37/106 (34%), Positives = 54/106 (50%) Frame = -2 Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144 +GQ+S CL+ +G + P F EN ++ + ++E+ S HLVP V G L Sbjct: 209 IGQSSALCLELPHGSQLPNFCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNL 268 Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSE 6 P+ I FK+N+LV + L PTL FF + P INI+ E Sbjct: 269 PFKILFKINTLVQNGCLSGPTLDTNFFRWV-----DPQRINISFIE 309