BLASTX nr result

ID: Ephedra29_contig00027402 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra29_contig00027402
         (324 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJA90770.1 RNA-dependent RNA polymerase 2 [Ephedra trifurca]          197   2e-56
AJP06346.1 RDR2 [Pinus tabuliformis]                                   93   6e-20
AJA90762.1 RNA-dependent RNA polymerase 2 [Cycas revoluta]             93   9e-20
AJA90786.1 RNA-dependent RNA polymerase 2 [Pinus canariensis]          92   2e-19
AJA90778.1 RNA-dependent RNA polymerase 2 [Ginkgo biloba]              81   1e-15
XP_002311535.2 hypothetical protein POPTR_0008s13520g [Populus t...    72   2e-12
EOY01387.1 Rna-dependent RNA polymerase, putative [Theobroma cacao]    69   2e-11
XP_003518619.1 PREDICTED: RNA-dependent RNA polymerase 1 [Glycin...    69   3e-11
OMO72380.1 RNA-dependent RNA polymerase, eukaryotic-type [Corcho...    68   4e-11
XP_013466604.1 RNA-directed RNA polymerase [Medicago truncatula]...    67   7e-11
XP_013466603.1 RNA-directed RNA polymerase [Medicago truncatula]...    67   7e-11
OMO89431.1 RNA-dependent RNA polymerase, eukaryotic-type [Corcho...    67   7e-11
XP_007045555.2 PREDICTED: probable RNA-dependent RNA polymerase ...    66   2e-10
XP_018856654.1 PREDICTED: RNA-dependent RNA polymerase 1 [Juglan...    66   2e-10
XP_011028096.1 PREDICTED: probable RNA-dependent RNA polymerase ...    65   6e-10
XP_011625384.1 PREDICTED: probable RNA-dependent RNA polymerase ...    64   9e-10
ERN11375.1 hypothetical protein AMTR_s00176p00039530 [Amborella ...    64   9e-10
CBI26821.3 unnamed protein product, partial [Vitis vinifera]           64   1e-09
XP_011463162.1 PREDICTED: probable RNA-dependent RNA polymerase ...    64   1e-09
XP_002281315.1 PREDICTED: probable RNA-dependent RNA polymerase ...    64   1e-09

>AJA90770.1 RNA-dependent RNA polymerase 2 [Ephedra trifurca]
          Length = 1111

 Score =  197 bits (500), Expect = 2e-56
 Identities = 98/107 (91%), Positives = 100/107 (93%)
 Frame = -2

Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
           VGQASVFCLDF NGRKHPAFVENLPFFEMMQDELLMENDVLLSP P+LVPYVRV DGVTL
Sbjct: 219 VGQASVFCLDFGNGRKHPAFVENLPFFEMMQDELLMENDVLLSPCPYLVPYVRVPDGVTL 278

Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3
           PYDIAFKLNSLVHH IL APTLT EFF+VLTN NYSPLHINIALSEL
Sbjct: 279 PYDIAFKLNSLVHHGILSAPTLTSEFFDVLTNHNYSPLHINIALSEL 325


>AJP06346.1 RDR2 [Pinus tabuliformis]
          Length = 1123

 Score = 93.2 bits (230), Expect = 6e-20
 Identities = 43/107 (40%), Positives = 69/107 (64%)
 Frame = -2

Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
           +GQA+ FC++  +  +    +E++P+ E M+DE+ +EN     PF H+VP +   + V L
Sbjct: 220 IGQATSFCIELPSTVELAHIIESMPYHEEMEDEITLENGTSFFPFAHMVPSLNAPEDVNL 279

Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3
            Y I F+++SL+H+ IL  PTL+ EFF++L N     LHI +AL+EL
Sbjct: 280 SYQIYFQISSLIHYGILSGPTLSREFFDLLQNDKTPDLHIRLALAEL 326


>AJA90762.1 RNA-dependent RNA polymerase 2 [Cycas revoluta]
          Length = 1117

 Score = 92.8 bits (229), Expect = 9e-20
 Identities = 45/107 (42%), Positives = 69/107 (64%)
 Frame = -2

Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
           +GQ++ FCL+   G +     E LP++  M++EL +EN + +S    +VP +   +GV L
Sbjct: 223 IGQSTSFCLELPYGVEVAQITEILPYYRSMEEELTLENGISISSSLSMVPIINAPEGVNL 282

Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3
           PY+I F++NSLVH  IL  PTL  EFF++L +     +HIN+AL+EL
Sbjct: 283 PYEIMFQVNSLVHRGILSLPTLCPEFFDLLRHDRTPLVHINLALTEL 329


>AJA90786.1 RNA-dependent RNA polymerase 2 [Pinus canariensis]
          Length = 1114

 Score = 91.7 bits (226), Expect = 2e-19
 Identities = 43/107 (40%), Positives = 68/107 (63%)
 Frame = -2

Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
           +GQA+ FC++  +       +E++P+ E M+DE+ +EN     PF H+VP +   + V L
Sbjct: 220 IGQATSFCIELPSTVGLAHIIESMPYHEEMEDEITLENGTSFFPFAHIVPSLSAPEDVNL 279

Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3
            Y I F+++SL+H+ IL  PTL+ EFF++L N     LHI +AL+EL
Sbjct: 280 SYQIYFQISSLIHYGILSGPTLSREFFDLLQNDKTPDLHIRLALAEL 326


>AJA90778.1 RNA-dependent RNA polymerase 2 [Ginkgo biloba]
          Length = 1114

 Score = 80.9 bits (198), Expect = 1e-15
 Identities = 40/107 (37%), Positives = 63/107 (58%)
 Frame = -2

Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
           +GQ+S FCL+  NG +     E++P ++ +++EL +E     S    LVP V   + V L
Sbjct: 225 IGQSSAFCLELPNGVEVAHITESMPHYKALEEELTLEYGSSFSSSQSLVPIVNAPNDVNL 284

Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3
            Y   F++NSL+H  IL  PTL  EF+++L +     +H N+AL+EL
Sbjct: 285 SYQTVFQINSLIHRGILSGPTLCQEFYDLLRSDRTPLVHTNLALTEL 331


>XP_002311535.2 hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
           EEE88902.2 hypothetical protein POPTR_0008s13520g
           [Populus trichocarpa]
          Length = 1139

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 37/107 (34%), Positives = 53/107 (49%)
 Frame = -2

Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
           +GQ+S  CL+     + P F EN P ++  +    +E          LVP +R   G+ L
Sbjct: 230 IGQSSALCLELPRSGQLPNFQENFPCYKEDEGRFFLEVGSTFCRVSDLVPILREAQGIEL 289

Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3
           PYDI FK+NSLV H  L  P L   F+ ++     +  HI  AL +L
Sbjct: 290 PYDIVFKVNSLVQHGYLPGPALDASFYRLINPSRVNIAHIQNALEKL 336


>EOY01387.1 Rna-dependent RNA polymerase, putative [Theobroma cacao]
          Length = 1125

 Score = 68.9 bits (167), Expect = 2e-11
 Identities = 38/106 (35%), Positives = 57/106 (53%)
 Frame = -2

Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
           +GQ+   CL+   G K P F E+  ++  ++D  ++EN    S  P LVP +   +G  L
Sbjct: 216 IGQSFALCLELPRGVKLPKFDESF-YYRKVEDNFILENGSSFSCNPDLVPMITPPEGFDL 274

Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSE 6
           PY + FK+NSLV H  L  PTL  +F+ ++      P  I+IA  E
Sbjct: 275 PYGVLFKVNSLVQHGCLLPPTLDADFYQLV-----DPRRIDIAFIE 315


>XP_003518619.1 PREDICTED: RNA-dependent RNA polymerase 1 [Glycine max]
           XP_006574822.1 PREDICTED: RNA-dependent RNA polymerase 1
           [Glycine max] XP_006574823.1 PREDICTED: RNA-dependent
           RNA polymerase 1 [Glycine max] KHN15461.1 RNA-dependent
           RNA polymerase 1 [Glycine soja] KRH70363.1 hypothetical
           protein GLYMA_02G086100 [Glycine max]
          Length = 1125

 Score = 68.6 bits (166), Expect = 3e-11
 Identities = 38/97 (39%), Positives = 53/97 (54%)
 Frame = -2

Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
           +GQ+S  CL+  NGR+ P F EN  ++E  + +  ++  V  S    LVP V    GV +
Sbjct: 222 IGQSSAICLELPNGRQLPNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKI 281

Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSP 33
            YDI FK+NSLV H  L  P L  +F+  L +P   P
Sbjct: 282 SYDILFKVNSLVQHACLAGPALDGDFYR-LVDPRRMP 317


>OMO72380.1 RNA-dependent RNA polymerase, eukaryotic-type [Corchorus olitorius]
          Length = 1138

 Score = 68.2 bits (165), Expect = 4e-11
 Identities = 38/107 (35%), Positives = 56/107 (52%)
 Frame = -2

Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
           +GQ+   CL+   G K P F +N  +++ ++D+  +E   + S  P LVP +    G  L
Sbjct: 215 IGQSFGLCLELPRGVKLPKFDQNF-YYKKVEDKFSLEKGSIFSSNPVLVPIIVPPQGFDL 273

Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3
           PY I FK+NSLV H  L  PTL   FF ++     +   I  AL +L
Sbjct: 274 PYSILFKVNSLVQHGCLPVPTLDANFFKLIDPSRINSAFIEHALEKL 320


>XP_013466604.1 RNA-directed RNA polymerase [Medicago truncatula] KEH40644.1
           RNA-directed RNA polymerase [Medicago truncatula]
          Length = 789

 Score = 67.4 bits (163), Expect = 7e-11
 Identities = 36/104 (34%), Positives = 56/104 (53%)
 Frame = -2

Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
           +GQ+S  CL+  + R  P F EN   +E ++ +  +E+    S  P +VP V    G+ +
Sbjct: 221 IGQSSAICLELSSNRDFPNFKENCVHYEEIEGQYTLESGSSFSCNPDVVPMVAPPQGIQI 280

Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIAL 12
           P+DI FK+NSLV H  L    L  +F+ ++      PL IN+ L
Sbjct: 281 PFDILFKVNSLVQHGCLSGSELDNDFYRLV-----DPLGINVEL 319


>XP_013466603.1 RNA-directed RNA polymerase [Medicago truncatula] KEH40645.1
           RNA-directed RNA polymerase [Medicago truncatula]
          Length = 1114

 Score = 67.4 bits (163), Expect = 7e-11
 Identities = 36/104 (34%), Positives = 56/104 (53%)
 Frame = -2

Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
           +GQ+S  CL+  + R  P F EN   +E ++ +  +E+    S  P +VP V    G+ +
Sbjct: 221 IGQSSAICLELSSNRDFPNFKENCVHYEEIEGQYTLESGSSFSCNPDVVPMVAPPQGIQI 280

Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIAL 12
           P+DI FK+NSLV H  L    L  +F+ ++      PL IN+ L
Sbjct: 281 PFDILFKVNSLVQHGCLSGSELDNDFYRLV-----DPLGINVEL 319


>OMO89431.1 RNA-dependent RNA polymerase, eukaryotic-type [Corchorus
           capsularis]
          Length = 1288

 Score = 67.4 bits (163), Expect = 7e-11
 Identities = 38/107 (35%), Positives = 56/107 (52%)
 Frame = -2

Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
           +GQ+   CL+   G K P F +N  +++ ++D+  +E   + S  P LVP +    G  L
Sbjct: 215 IGQSFGLCLELPRGVKLPKFDQNF-YYKKVEDKFSLEKGSVFSSNPVLVPIIVPPQGFDL 273

Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3
           PY I FK+NSLV H  L  PTL   FF ++     +   I  AL +L
Sbjct: 274 PYSILFKVNSLVQHGCLPVPTLDANFFKLVDPSRINTAFIEHALEKL 320


>XP_007045555.2 PREDICTED: probable RNA-dependent RNA polymerase 1 [Theobroma
           cacao]
          Length = 1125

 Score = 66.2 bits (160), Expect = 2e-10
 Identities = 37/106 (34%), Positives = 56/106 (52%)
 Frame = -2

Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
           +GQ+   CL+   G K P   E+  ++  ++D  ++EN    S  P LVP +   +G  L
Sbjct: 216 IGQSFALCLELPRGVKLPKVDESF-YYRKVEDNFILENGSSFSCNPDLVPMITPPEGFDL 274

Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSE 6
           PY + FK+NSLV H  L  PTL  +F+ ++      P  I+IA  E
Sbjct: 275 PYGVLFKVNSLVQHGCLLPPTLDADFYQLV-----DPRRIDIAFIE 315


>XP_018856654.1 PREDICTED: RNA-dependent RNA polymerase 1 [Juglans regia]
           XP_018856655.1 PREDICTED: RNA-dependent RNA polymerase 1
           [Juglans regia] XP_018856657.1 PREDICTED: RNA-dependent
           RNA polymerase 1 [Juglans regia]
          Length = 1131

 Score = 66.2 bits (160), Expect = 2e-10
 Identities = 36/93 (38%), Positives = 52/93 (55%)
 Frame = -2

Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
           +GQ+S  CL+  +G + P F EN  +++  +   ++E+    S    LVP V    GV L
Sbjct: 219 IGQSSSLCLELPHGHQLPDFRENFAYYKESEGRYILESGSTFSCNLDLVPIVGPSPGVDL 278

Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNP 45
           PY+I FK+NSLV +  L  PTL   F+  L NP
Sbjct: 279 PYEILFKINSLVQNGCLAGPTLDVRFYR-LVNP 310


>XP_011028096.1 PREDICTED: probable RNA-dependent RNA polymerase 1 [Populus
           euphratica]
          Length = 1144

 Score = 64.7 bits (156), Expect = 6e-10
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
 Frame = -2

Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLME-NDVLLSPFPHLVPYVRVLDGVT 147
           +GQ+S  CL+     + P+F EN P ++  +    +E           LVP +    G+ 
Sbjct: 236 IGQSSALCLELPRSGQLPSFQENFPCYKEDEGRFSLELGSTFCRGHSDLVPILSETQGIE 295

Query: 146 LPYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3
           LPYDI FK+NSLV H  L  P L   F+ ++        +I  AL +L
Sbjct: 296 LPYDIVFKVNSLVQHGYLPGPALDASFYRLINPSRVKIAYIQHALEKL 343


>XP_011625384.1 PREDICTED: probable RNA-dependent RNA polymerase 1 [Amborella
           trichopoda]
          Length = 1140

 Score = 64.3 bits (155), Expect = 9e-10
 Identities = 34/90 (37%), Positives = 49/90 (54%)
 Frame = -2

Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
           +GQ+S  CL   NG + P   EN  +++ +     ++     S   HLVP V   D + L
Sbjct: 225 IGQSSSLCLALPNGTRIPNIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKL 284

Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVL 54
           PY I F++NSLV +  L  PTL  EF+N+L
Sbjct: 285 PYKILFRVNSLVQNGFLVGPTLDTEFYNLL 314


>ERN11375.1 hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score = 64.3 bits (155), Expect = 9e-10
 Identities = 34/90 (37%), Positives = 49/90 (54%)
 Frame = -2

Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
           +GQ+S  CL   NG + P   EN  +++ +     ++     S   HLVP V   D + L
Sbjct: 295 IGQSSSLCLALPNGTRIPNIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKL 354

Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVL 54
           PY I F++NSLV +  L  PTL  EF+N+L
Sbjct: 355 PYKILFRVNSLVQNGFLVGPTLDTEFYNLL 384


>CBI26821.3 unnamed protein product, partial [Vitis vinifera]
          Length = 943

 Score = 63.9 bits (154), Expect = 1e-09
 Identities = 37/106 (34%), Positives = 54/106 (50%)
 Frame = -2

Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
           +GQ+S  CL+  +G + P F EN   ++    + ++E+    S   HLVP V    G  L
Sbjct: 176 IGQSSALCLELPHGSQLPNFCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNL 235

Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSE 6
           P+ I FK+N+LV +  L  PTL   FF  +      P  INI+  E
Sbjct: 236 PFKILFKINTLVQNGCLSGPTLDTNFFRWV-----DPQRINISFIE 276


>XP_011463162.1 PREDICTED: probable RNA-dependent RNA polymerase 1 isoform X2
           [Fragaria vesca subsp. vesca]
          Length = 1089

 Score = 63.9 bits (154), Expect = 1e-09
 Identities = 37/107 (34%), Positives = 53/107 (49%)
 Frame = -2

Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
           +GQ+S  CL   +  + P F EN  +++    + ++EN    S    LVP V    G+ L
Sbjct: 184 IGQSSSLCLVLTSDGELPDFEENFAYYKKTDGQFILENGSTFSRNRDLVPIVGSPAGIDL 243

Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3
           PYDI FK+N LV    L  PTL   F+ ++     S   I  AL +L
Sbjct: 244 PYDILFKINLLVQQGCLSGPTLDNNFYRLVDPRRISRPCIEFALDKL 290


>XP_002281315.1 PREDICTED: probable RNA-dependent RNA polymerase 1 [Vitis vinifera]
           XP_010650995.1 PREDICTED: probable RNA-dependent RNA
           polymerase 1 [Vitis vinifera]
          Length = 1109

 Score = 63.9 bits (154), Expect = 1e-09
 Identities = 37/106 (34%), Positives = 54/106 (50%)
 Frame = -2

Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
           +GQ+S  CL+  +G + P F EN   ++    + ++E+    S   HLVP V    G  L
Sbjct: 209 IGQSSALCLELPHGSQLPNFCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNL 268

Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSE 6
           P+ I FK+N+LV +  L  PTL   FF  +      P  INI+  E
Sbjct: 269 PFKILFKINTLVQNGCLSGPTLDTNFFRWV-----DPQRINISFIE 309


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