BLASTX nr result
ID: Ephedra29_contig00027402
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra29_contig00027402
(324 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJA90770.1 RNA-dependent RNA polymerase 2 [Ephedra trifurca] 197 2e-56
AJP06346.1 RDR2 [Pinus tabuliformis] 93 6e-20
AJA90762.1 RNA-dependent RNA polymerase 2 [Cycas revoluta] 93 9e-20
AJA90786.1 RNA-dependent RNA polymerase 2 [Pinus canariensis] 92 2e-19
AJA90778.1 RNA-dependent RNA polymerase 2 [Ginkgo biloba] 81 1e-15
XP_002311535.2 hypothetical protein POPTR_0008s13520g [Populus t... 72 2e-12
EOY01387.1 Rna-dependent RNA polymerase, putative [Theobroma cacao] 69 2e-11
XP_003518619.1 PREDICTED: RNA-dependent RNA polymerase 1 [Glycin... 69 3e-11
OMO72380.1 RNA-dependent RNA polymerase, eukaryotic-type [Corcho... 68 4e-11
XP_013466604.1 RNA-directed RNA polymerase [Medicago truncatula]... 67 7e-11
XP_013466603.1 RNA-directed RNA polymerase [Medicago truncatula]... 67 7e-11
OMO89431.1 RNA-dependent RNA polymerase, eukaryotic-type [Corcho... 67 7e-11
XP_007045555.2 PREDICTED: probable RNA-dependent RNA polymerase ... 66 2e-10
XP_018856654.1 PREDICTED: RNA-dependent RNA polymerase 1 [Juglan... 66 2e-10
XP_011028096.1 PREDICTED: probable RNA-dependent RNA polymerase ... 65 6e-10
XP_011625384.1 PREDICTED: probable RNA-dependent RNA polymerase ... 64 9e-10
ERN11375.1 hypothetical protein AMTR_s00176p00039530 [Amborella ... 64 9e-10
CBI26821.3 unnamed protein product, partial [Vitis vinifera] 64 1e-09
XP_011463162.1 PREDICTED: probable RNA-dependent RNA polymerase ... 64 1e-09
XP_002281315.1 PREDICTED: probable RNA-dependent RNA polymerase ... 64 1e-09
>AJA90770.1 RNA-dependent RNA polymerase 2 [Ephedra trifurca]
Length = 1111
Score = 197 bits (500), Expect = 2e-56
Identities = 98/107 (91%), Positives = 100/107 (93%)
Frame = -2
Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
VGQASVFCLDF NGRKHPAFVENLPFFEMMQDELLMENDVLLSP P+LVPYVRV DGVTL
Sbjct: 219 VGQASVFCLDFGNGRKHPAFVENLPFFEMMQDELLMENDVLLSPCPYLVPYVRVPDGVTL 278
Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3
PYDIAFKLNSLVHH IL APTLT EFF+VLTN NYSPLHINIALSEL
Sbjct: 279 PYDIAFKLNSLVHHGILSAPTLTSEFFDVLTNHNYSPLHINIALSEL 325
>AJP06346.1 RDR2 [Pinus tabuliformis]
Length = 1123
Score = 93.2 bits (230), Expect = 6e-20
Identities = 43/107 (40%), Positives = 69/107 (64%)
Frame = -2
Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
+GQA+ FC++ + + +E++P+ E M+DE+ +EN PF H+VP + + V L
Sbjct: 220 IGQATSFCIELPSTVELAHIIESMPYHEEMEDEITLENGTSFFPFAHMVPSLNAPEDVNL 279
Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3
Y I F+++SL+H+ IL PTL+ EFF++L N LHI +AL+EL
Sbjct: 280 SYQIYFQISSLIHYGILSGPTLSREFFDLLQNDKTPDLHIRLALAEL 326
>AJA90762.1 RNA-dependent RNA polymerase 2 [Cycas revoluta]
Length = 1117
Score = 92.8 bits (229), Expect = 9e-20
Identities = 45/107 (42%), Positives = 69/107 (64%)
Frame = -2
Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
+GQ++ FCL+ G + E LP++ M++EL +EN + +S +VP + +GV L
Sbjct: 223 IGQSTSFCLELPYGVEVAQITEILPYYRSMEEELTLENGISISSSLSMVPIINAPEGVNL 282
Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3
PY+I F++NSLVH IL PTL EFF++L + +HIN+AL+EL
Sbjct: 283 PYEIMFQVNSLVHRGILSLPTLCPEFFDLLRHDRTPLVHINLALTEL 329
>AJA90786.1 RNA-dependent RNA polymerase 2 [Pinus canariensis]
Length = 1114
Score = 91.7 bits (226), Expect = 2e-19
Identities = 43/107 (40%), Positives = 68/107 (63%)
Frame = -2
Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
+GQA+ FC++ + +E++P+ E M+DE+ +EN PF H+VP + + V L
Sbjct: 220 IGQATSFCIELPSTVGLAHIIESMPYHEEMEDEITLENGTSFFPFAHIVPSLSAPEDVNL 279
Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3
Y I F+++SL+H+ IL PTL+ EFF++L N LHI +AL+EL
Sbjct: 280 SYQIYFQISSLIHYGILSGPTLSREFFDLLQNDKTPDLHIRLALAEL 326
>AJA90778.1 RNA-dependent RNA polymerase 2 [Ginkgo biloba]
Length = 1114
Score = 80.9 bits (198), Expect = 1e-15
Identities = 40/107 (37%), Positives = 63/107 (58%)
Frame = -2
Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
+GQ+S FCL+ NG + E++P ++ +++EL +E S LVP V + V L
Sbjct: 225 IGQSSAFCLELPNGVEVAHITESMPHYKALEEELTLEYGSSFSSSQSLVPIVNAPNDVNL 284
Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3
Y F++NSL+H IL PTL EF+++L + +H N+AL+EL
Sbjct: 285 SYQTVFQINSLIHRGILSGPTLCQEFYDLLRSDRTPLVHTNLALTEL 331
>XP_002311535.2 hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
EEE88902.2 hypothetical protein POPTR_0008s13520g
[Populus trichocarpa]
Length = 1139
Score = 71.6 bits (174), Expect = 2e-12
Identities = 37/107 (34%), Positives = 53/107 (49%)
Frame = -2
Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
+GQ+S CL+ + P F EN P ++ + +E LVP +R G+ L
Sbjct: 230 IGQSSALCLELPRSGQLPNFQENFPCYKEDEGRFFLEVGSTFCRVSDLVPILREAQGIEL 289
Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3
PYDI FK+NSLV H L P L F+ ++ + HI AL +L
Sbjct: 290 PYDIVFKVNSLVQHGYLPGPALDASFYRLINPSRVNIAHIQNALEKL 336
>EOY01387.1 Rna-dependent RNA polymerase, putative [Theobroma cacao]
Length = 1125
Score = 68.9 bits (167), Expect = 2e-11
Identities = 38/106 (35%), Positives = 57/106 (53%)
Frame = -2
Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
+GQ+ CL+ G K P F E+ ++ ++D ++EN S P LVP + +G L
Sbjct: 216 IGQSFALCLELPRGVKLPKFDESF-YYRKVEDNFILENGSSFSCNPDLVPMITPPEGFDL 274
Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSE 6
PY + FK+NSLV H L PTL +F+ ++ P I+IA E
Sbjct: 275 PYGVLFKVNSLVQHGCLLPPTLDADFYQLV-----DPRRIDIAFIE 315
>XP_003518619.1 PREDICTED: RNA-dependent RNA polymerase 1 [Glycine max]
XP_006574822.1 PREDICTED: RNA-dependent RNA polymerase 1
[Glycine max] XP_006574823.1 PREDICTED: RNA-dependent
RNA polymerase 1 [Glycine max] KHN15461.1 RNA-dependent
RNA polymerase 1 [Glycine soja] KRH70363.1 hypothetical
protein GLYMA_02G086100 [Glycine max]
Length = 1125
Score = 68.6 bits (166), Expect = 3e-11
Identities = 38/97 (39%), Positives = 53/97 (54%)
Frame = -2
Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
+GQ+S CL+ NGR+ P F EN ++E + + ++ V S LVP V GV +
Sbjct: 222 IGQSSAICLELPNGRQLPNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKI 281
Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSP 33
YDI FK+NSLV H L P L +F+ L +P P
Sbjct: 282 SYDILFKVNSLVQHACLAGPALDGDFYR-LVDPRRMP 317
>OMO72380.1 RNA-dependent RNA polymerase, eukaryotic-type [Corchorus olitorius]
Length = 1138
Score = 68.2 bits (165), Expect = 4e-11
Identities = 38/107 (35%), Positives = 56/107 (52%)
Frame = -2
Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
+GQ+ CL+ G K P F +N +++ ++D+ +E + S P LVP + G L
Sbjct: 215 IGQSFGLCLELPRGVKLPKFDQNF-YYKKVEDKFSLEKGSIFSSNPVLVPIIVPPQGFDL 273
Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3
PY I FK+NSLV H L PTL FF ++ + I AL +L
Sbjct: 274 PYSILFKVNSLVQHGCLPVPTLDANFFKLIDPSRINSAFIEHALEKL 320
>XP_013466604.1 RNA-directed RNA polymerase [Medicago truncatula] KEH40644.1
RNA-directed RNA polymerase [Medicago truncatula]
Length = 789
Score = 67.4 bits (163), Expect = 7e-11
Identities = 36/104 (34%), Positives = 56/104 (53%)
Frame = -2
Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
+GQ+S CL+ + R P F EN +E ++ + +E+ S P +VP V G+ +
Sbjct: 221 IGQSSAICLELSSNRDFPNFKENCVHYEEIEGQYTLESGSSFSCNPDVVPMVAPPQGIQI 280
Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIAL 12
P+DI FK+NSLV H L L +F+ ++ PL IN+ L
Sbjct: 281 PFDILFKVNSLVQHGCLSGSELDNDFYRLV-----DPLGINVEL 319
>XP_013466603.1 RNA-directed RNA polymerase [Medicago truncatula] KEH40645.1
RNA-directed RNA polymerase [Medicago truncatula]
Length = 1114
Score = 67.4 bits (163), Expect = 7e-11
Identities = 36/104 (34%), Positives = 56/104 (53%)
Frame = -2
Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
+GQ+S CL+ + R P F EN +E ++ + +E+ S P +VP V G+ +
Sbjct: 221 IGQSSAICLELSSNRDFPNFKENCVHYEEIEGQYTLESGSSFSCNPDVVPMVAPPQGIQI 280
Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIAL 12
P+DI FK+NSLV H L L +F+ ++ PL IN+ L
Sbjct: 281 PFDILFKVNSLVQHGCLSGSELDNDFYRLV-----DPLGINVEL 319
>OMO89431.1 RNA-dependent RNA polymerase, eukaryotic-type [Corchorus
capsularis]
Length = 1288
Score = 67.4 bits (163), Expect = 7e-11
Identities = 38/107 (35%), Positives = 56/107 (52%)
Frame = -2
Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
+GQ+ CL+ G K P F +N +++ ++D+ +E + S P LVP + G L
Sbjct: 215 IGQSFGLCLELPRGVKLPKFDQNF-YYKKVEDKFSLEKGSVFSSNPVLVPIIVPPQGFDL 273
Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3
PY I FK+NSLV H L PTL FF ++ + I AL +L
Sbjct: 274 PYSILFKVNSLVQHGCLPVPTLDANFFKLVDPSRINTAFIEHALEKL 320
>XP_007045555.2 PREDICTED: probable RNA-dependent RNA polymerase 1 [Theobroma
cacao]
Length = 1125
Score = 66.2 bits (160), Expect = 2e-10
Identities = 37/106 (34%), Positives = 56/106 (52%)
Frame = -2
Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
+GQ+ CL+ G K P E+ ++ ++D ++EN S P LVP + +G L
Sbjct: 216 IGQSFALCLELPRGVKLPKVDESF-YYRKVEDNFILENGSSFSCNPDLVPMITPPEGFDL 274
Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSE 6
PY + FK+NSLV H L PTL +F+ ++ P I+IA E
Sbjct: 275 PYGVLFKVNSLVQHGCLLPPTLDADFYQLV-----DPRRIDIAFIE 315
>XP_018856654.1 PREDICTED: RNA-dependent RNA polymerase 1 [Juglans regia]
XP_018856655.1 PREDICTED: RNA-dependent RNA polymerase 1
[Juglans regia] XP_018856657.1 PREDICTED: RNA-dependent
RNA polymerase 1 [Juglans regia]
Length = 1131
Score = 66.2 bits (160), Expect = 2e-10
Identities = 36/93 (38%), Positives = 52/93 (55%)
Frame = -2
Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
+GQ+S CL+ +G + P F EN +++ + ++E+ S LVP V GV L
Sbjct: 219 IGQSSSLCLELPHGHQLPDFRENFAYYKESEGRYILESGSTFSCNLDLVPIVGPSPGVDL 278
Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNP 45
PY+I FK+NSLV + L PTL F+ L NP
Sbjct: 279 PYEILFKINSLVQNGCLAGPTLDVRFYR-LVNP 310
>XP_011028096.1 PREDICTED: probable RNA-dependent RNA polymerase 1 [Populus
euphratica]
Length = 1144
Score = 64.7 bits (156), Expect = 6e-10
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Frame = -2
Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLME-NDVLLSPFPHLVPYVRVLDGVT 147
+GQ+S CL+ + P+F EN P ++ + +E LVP + G+
Sbjct: 236 IGQSSALCLELPRSGQLPSFQENFPCYKEDEGRFSLELGSTFCRGHSDLVPILSETQGIE 295
Query: 146 LPYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3
LPYDI FK+NSLV H L P L F+ ++ +I AL +L
Sbjct: 296 LPYDIVFKVNSLVQHGYLPGPALDASFYRLINPSRVKIAYIQHALEKL 343
>XP_011625384.1 PREDICTED: probable RNA-dependent RNA polymerase 1 [Amborella
trichopoda]
Length = 1140
Score = 64.3 bits (155), Expect = 9e-10
Identities = 34/90 (37%), Positives = 49/90 (54%)
Frame = -2
Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
+GQ+S CL NG + P EN +++ + ++ S HLVP V D + L
Sbjct: 225 IGQSSSLCLALPNGTRIPNIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKL 284
Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVL 54
PY I F++NSLV + L PTL EF+N+L
Sbjct: 285 PYKILFRVNSLVQNGFLVGPTLDTEFYNLL 314
>ERN11375.1 hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
Length = 1210
Score = 64.3 bits (155), Expect = 9e-10
Identities = 34/90 (37%), Positives = 49/90 (54%)
Frame = -2
Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
+GQ+S CL NG + P EN +++ + ++ S HLVP V D + L
Sbjct: 295 IGQSSSLCLALPNGTRIPNIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKL 354
Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVL 54
PY I F++NSLV + L PTL EF+N+L
Sbjct: 355 PYKILFRVNSLVQNGFLVGPTLDTEFYNLL 384
>CBI26821.3 unnamed protein product, partial [Vitis vinifera]
Length = 943
Score = 63.9 bits (154), Expect = 1e-09
Identities = 37/106 (34%), Positives = 54/106 (50%)
Frame = -2
Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
+GQ+S CL+ +G + P F EN ++ + ++E+ S HLVP V G L
Sbjct: 176 IGQSSALCLELPHGSQLPNFCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNL 235
Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSE 6
P+ I FK+N+LV + L PTL FF + P INI+ E
Sbjct: 236 PFKILFKINTLVQNGCLSGPTLDTNFFRWV-----DPQRINISFIE 276
>XP_011463162.1 PREDICTED: probable RNA-dependent RNA polymerase 1 isoform X2
[Fragaria vesca subsp. vesca]
Length = 1089
Score = 63.9 bits (154), Expect = 1e-09
Identities = 37/107 (34%), Positives = 53/107 (49%)
Frame = -2
Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
+GQ+S CL + + P F EN +++ + ++EN S LVP V G+ L
Sbjct: 184 IGQSSSLCLVLTSDGELPDFEENFAYYKKTDGQFILENGSTFSRNRDLVPIVGSPAGIDL 243
Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSEL 3
PYDI FK+N LV L PTL F+ ++ S I AL +L
Sbjct: 244 PYDILFKINLLVQQGCLSGPTLDNNFYRLVDPRRISRPCIEFALDKL 290
>XP_002281315.1 PREDICTED: probable RNA-dependent RNA polymerase 1 [Vitis vinifera]
XP_010650995.1 PREDICTED: probable RNA-dependent RNA
polymerase 1 [Vitis vinifera]
Length = 1109
Score = 63.9 bits (154), Expect = 1e-09
Identities = 37/106 (34%), Positives = 54/106 (50%)
Frame = -2
Query: 323 VGQASVFCLDFVNGRKHPAFVENLPFFEMMQDELLMENDVLLSPFPHLVPYVRVLDGVTL 144
+GQ+S CL+ +G + P F EN ++ + ++E+ S HLVP V G L
Sbjct: 209 IGQSSALCLELPHGSQLPNFCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNL 268
Query: 143 PYDIAFKLNSLVHHRILRAPTLTCEFFNVLTNPNYSPLHINIALSE 6
P+ I FK+N+LV + L PTL FF + P INI+ E
Sbjct: 269 PFKILFKINTLVQNGCLSGPTLDTNFFRWV-----DPQRINISFIE 309