BLASTX nr result
ID: Ephedra29_contig00026838
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra29_contig00026838
(378 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YP_009231419.1 RNA polymerase beta subunit-1 (chloroplast) [Ephe... 141 9e-37
YP_002519951.1 RNA polymerase beta subunit-1 (chloroplast) [Ephe... 141 9e-37
YP_008082191.1 RNA polymerase beta subunit-1 (chloroplast) [Gnet... 112 2e-29
YP_002519950.1 RNA polymerase beta chain (chloroplast) [Ephedra ... 119 1e-28
ERM98365.1 hypothetical protein AMTR_s01499p00009870 [Amborella ... 86 2e-28
ANZ54040.1 RNA polymerase beta subunit-1 (plastid) [Gnetum monta... 112 2e-26
ANZ53908.1 RNA polymerase beta subunit-1 (plastid) [Gnetum haina... 112 2e-26
ANZ53776.1 RNA polymerase beta subunit-1 (plastid) [Gnetum parvi... 112 2e-26
ANZ53710.1 RNA polymerase beta subunit-1 (plastid) [Gnetum parvi... 112 2e-26
YP_009193287.1 RNA polymerase beta subunit-1 (chloroplast) [Gnet... 112 2e-26
YP_002519786.1 RNA polymerase beta subunit-1 [Gnetum parvifolium... 112 2e-26
YP_009231418.1 RNA polymerase beta chain (chloroplast) [Ephedra ... 112 2e-26
ANZ53578.1 RNA polymerase beta subunit-1 (plastid) [Gnetum gnemon] 112 2e-26
YP_009117840.1 RNA polymerase beta subunit-1 (plastid) [Gnetum g... 112 2e-26
ANZ53644.1 RNA polymerase beta subunit-1 (plastid) [Gnetum gnemon] 110 7e-26
YP_001876573.1 RNA polymerase beta [Welwitschia mirabilis] B2Y1V... 109 2e-25
BAH11232.1 RNA polymerase beta subunit-1 (chloroplast) [Welwitsc... 109 2e-25
EPS74480.1 hypothetical protein M569_00269, partial [Genlisea au... 90 3e-23
YP_009144124.1 RNA polymerase beta subunit-1 (chloroplast) [Woll... 99 2e-21
AJF42553.1 RNA polymerase beta subunit-1 (chloroplast) [Araucari... 99 2e-21
>YP_009231419.1 RNA polymerase beta subunit-1 (chloroplast) [Ephedra foeminea]
ALV90135.1 RNA polymerase beta subunit-1 (chloroplast)
[Ephedra foeminea]
Length = 695
Score = 141 bits (356), Expect = 9e-37
Identities = 67/67 (100%), Positives = 67/67 (100%)
Frame = -2
Query: 203 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 24
MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER
Sbjct: 1 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 60
Query: 23 IFGPVKN 3
IFGPVKN
Sbjct: 61 IFGPVKN 67
>YP_002519951.1 RNA polymerase beta subunit-1 (chloroplast) [Ephedra equisetina]
BAH11319.1 RNA polymerase beta subunit-1 (chloroplast)
[Ephedra equisetina]
Length = 695
Score = 141 bits (356), Expect = 9e-37
Identities = 67/67 (100%), Positives = 67/67 (100%)
Frame = -2
Query: 203 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 24
MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER
Sbjct: 1 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 60
Query: 23 IFGPVKN 3
IFGPVKN
Sbjct: 61 IFGPVKN 67
>YP_008082191.1 RNA polymerase beta subunit-1 (chloroplast) [Gnetum montanum]
AGL11036.1 RNA polymerase beta subunit-1 (chloroplast)
[Gnetum montanum]
Length = 155
Score = 112 bits (281), Expect = 2e-29
Identities = 50/67 (74%), Positives = 60/67 (89%)
Frame = -2
Query: 203 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 24
MIDS+K+HQKL+ITLVSPEQIR W E LPNG+++G+V NP+TIDL TNKP+RNG FCER
Sbjct: 1 MIDSQKEHQKLKITLVSPEQIRVWSETILPNGKRIGEVTNPKTIDLATNKPERNGSFCER 60
Query: 23 IFGPVKN 3
IFGPVK+
Sbjct: 61 IFGPVKS 67
>YP_002519950.1 RNA polymerase beta chain (chloroplast) [Ephedra equisetina]
BAH11318.1 RNA polymerase beta chain (chloroplast)
[Ephedra equisetina]
Length = 1100
Score = 119 bits (297), Expect = 1e-28
Identities = 60/60 (100%), Positives = 60/60 (100%)
Frame = -1
Query: 378 KILRSILDGHSVPKAETATESFRVLIRELRSLALELNHTIISEKNFQIENKFNFNQIAYD 199
KILRSILDGHSVPKAETATESFRVLIRELRSLALELNHTIISEKNFQIENKFNFNQIAYD
Sbjct: 1041 KILRSILDGHSVPKAETATESFRVLIRELRSLALELNHTIISEKNFQIENKFNFNQIAYD 1100
>ERM98365.1 hypothetical protein AMTR_s01499p00009870 [Amborella trichopoda]
Length = 351
Score = 86.3 bits (212), Expect(2) = 2e-28
Identities = 41/67 (61%), Positives = 51/67 (76%)
Frame = -2
Query: 203 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 24
MID + KHQ+LRI LVSP+Q AW K LPNGE VG+V P T +NKP+++GLFCER
Sbjct: 240 MID-RYKHQQLRIGLVSPQQRTAWANKILPNGEMVGEVTKPYTFHYKSNKPEKDGLFCER 298
Query: 23 IFGPVKN 3
IFGP+K+
Sbjct: 299 IFGPIKS 305
Score = 66.6 bits (161), Expect(2) = 2e-28
Identities = 32/54 (59%), Positives = 41/54 (75%)
Frame = -1
Query: 372 LRSILDGHSVPKAETATESFRVLIRELRSLALELNHTIISEKNFQIENKFNFNQ 211
L +++ G ++PK E A ESFR+L+RELRSLALEL H ++SEKNFQI K NQ
Sbjct: 182 LGTMIVGGTIPKPEGAPESFRLLVRELRSLALELKHFLVSEKNFQINRKVGMNQ 235
>ANZ54040.1 RNA polymerase beta subunit-1 (plastid) [Gnetum montanum]
ANZ54106.1 RNA polymerase beta subunit-1 (plastid)
[Gnetum montanum] ANZ54172.1 RNA polymerase beta
subunit-1 (plastid) [Gnetum pendulum] ANZ54238.1 RNA
polymerase beta subunit-1 (plastid) [Gnetum pendulum]
Length = 692
Score = 112 bits (281), Expect = 2e-26
Identities = 50/67 (74%), Positives = 60/67 (89%)
Frame = -2
Query: 203 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 24
MIDS+K+HQKL+ITLVSPEQIR W E LPNG+++G+V NP+TIDL TNKP+RNG FCER
Sbjct: 1 MIDSQKEHQKLKITLVSPEQIRVWSETILPNGKRIGEVTNPKTIDLATNKPERNGSFCER 60
Query: 23 IFGPVKN 3
IFGPVK+
Sbjct: 61 IFGPVKS 67
>ANZ53908.1 RNA polymerase beta subunit-1 (plastid) [Gnetum hainanense]
ANZ53974.1 RNA polymerase beta subunit-1 (plastid)
[Gnetum hainanense]
Length = 692
Score = 112 bits (281), Expect = 2e-26
Identities = 50/67 (74%), Positives = 60/67 (89%)
Frame = -2
Query: 203 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 24
MIDS+K+HQKL+ITLVSPEQIR W E LPNG+++G+V NP+TIDL TNKP+RNG FCER
Sbjct: 1 MIDSQKEHQKLKITLVSPEQIRVWSETILPNGKRIGEVTNPKTIDLATNKPERNGSFCER 60
Query: 23 IFGPVKN 3
IFGPVK+
Sbjct: 61 IFGPVKS 67
>ANZ53776.1 RNA polymerase beta subunit-1 (plastid) [Gnetum parvifolium]
Length = 692
Score = 112 bits (281), Expect = 2e-26
Identities = 50/67 (74%), Positives = 60/67 (89%)
Frame = -2
Query: 203 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 24
MIDS+K+HQKL+ITLVSPEQIR W E LPNG+++G+V NP+TIDL TNKP+RNG FCER
Sbjct: 1 MIDSQKEHQKLKITLVSPEQIRVWSETILPNGKRIGEVTNPKTIDLATNKPERNGSFCER 60
Query: 23 IFGPVKN 3
IFGPVK+
Sbjct: 61 IFGPVKS 67
>ANZ53710.1 RNA polymerase beta subunit-1 (plastid) [Gnetum parvifolium]
ANZ53842.1 RNA polymerase beta subunit-1 (plastid)
[Gnetum parvifolium]
Length = 692
Score = 112 bits (281), Expect = 2e-26
Identities = 50/67 (74%), Positives = 60/67 (89%)
Frame = -2
Query: 203 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 24
MIDS+K+HQKL+ITLVSPEQIR W E LPNG+++G+V NP+TIDL TNKP+RNG FCER
Sbjct: 1 MIDSQKEHQKLKITLVSPEQIRVWSETILPNGKRIGEVTNPKTIDLATNKPERNGSFCER 60
Query: 23 IFGPVKN 3
IFGPVK+
Sbjct: 61 IFGPVKS 67
>YP_009193287.1 RNA polymerase beta subunit-1 (chloroplast) [Gnetum ula] BAN16891.1
RNA polymerase beta subunit-1 (chloroplast) [Gnetum ula]
BAT70197.1 RNA polymerase beta subunit-1 (chloroplast)
[Gnetum ula]
Length = 692
Score = 112 bits (281), Expect = 2e-26
Identities = 50/67 (74%), Positives = 60/67 (89%)
Frame = -2
Query: 203 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 24
MIDS+K+HQKL+ITLVSPEQIR W E LPNG+++G+V NP+TIDL TNKP+RNG FCER
Sbjct: 1 MIDSQKEHQKLKITLVSPEQIRVWSETILPNGKRIGEVTNPKTIDLATNKPERNGSFCER 60
Query: 23 IFGPVKN 3
IFGPVK+
Sbjct: 61 IFGPVKS 67
>YP_002519786.1 RNA polymerase beta subunit-1 [Gnetum parvifolium] A6BM51.1
RecName: Full=DNA-directed RNA polymerase subunit beta';
AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
polymerase subunit beta'; Short=RNA polymerase subunit
beta' BAF64896.1 RNA polymerase beta' subunit
(chloroplast) [Gnetum parvifolium] BAH11297.1 RNA
polymerase beta subunit-1 (chloroplast) [Gnetum
parvifolium]
Length = 747
Score = 112 bits (281), Expect = 2e-26
Identities = 50/67 (74%), Positives = 60/67 (89%)
Frame = -2
Query: 203 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 24
MIDS+K+HQKL+ITLVSPEQIR W E LPNG+++G+V NP+TIDL TNKP+RNG FCER
Sbjct: 1 MIDSQKEHQKLKITLVSPEQIRVWSETILPNGKRIGEVTNPKTIDLATNKPERNGSFCER 60
Query: 23 IFGPVKN 3
IFGPVK+
Sbjct: 61 IFGPVKS 67
>YP_009231418.1 RNA polymerase beta chain (chloroplast) [Ephedra foeminea] ALV90134.1
RNA polymerase beta chain (chloroplast) [Ephedra
foeminea]
Length = 1105
Score = 112 bits (281), Expect = 2e-26
Identities = 60/65 (92%), Positives = 60/65 (92%), Gaps = 5/65 (7%)
Frame = -1
Query: 378 KILRSILDGHSVPKAETATESFRVLIRELRSLALELNHTII-----SEKNFQIENKFNFN 214
KILRSILDGHSVPKAETATESFRVLIRELRSLALELNHTII SEKNFQIENKFNFN
Sbjct: 1041 KILRSILDGHSVPKAETATESFRVLIRELRSLALELNHTIISEKNLSEKNFQIENKFNFN 1100
Query: 213 QIAYD 199
QIAYD
Sbjct: 1101 QIAYD 1105
>ANZ53578.1 RNA polymerase beta subunit-1 (plastid) [Gnetum gnemon]
Length = 692
Score = 112 bits (280), Expect = 2e-26
Identities = 50/67 (74%), Positives = 60/67 (89%)
Frame = -2
Query: 203 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 24
MIDS+K+HQKL+ITLVSPEQIR W LPNG+++G+V NP+TIDL TNKP+RNGLFCER
Sbjct: 1 MIDSQKEHQKLKITLVSPEQIRVWSGTILPNGKRIGEVTNPKTIDLATNKPERNGLFCER 60
Query: 23 IFGPVKN 3
IFGPVK+
Sbjct: 61 IFGPVKS 67
>YP_009117840.1 RNA polymerase beta subunit-1 (plastid) [Gnetum gnemon] AJE71468.1
RNA polymerase beta subunit-1 (plastid) [Gnetum gnemon]
Length = 692
Score = 112 bits (280), Expect = 2e-26
Identities = 50/67 (74%), Positives = 60/67 (89%)
Frame = -2
Query: 203 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 24
MIDS+K+HQKL+ITLVSPEQIR W LPNG+++G+V NP+TIDL TNKP+RNGLFCER
Sbjct: 1 MIDSQKEHQKLKITLVSPEQIRVWSGTILPNGKRIGEVTNPKTIDLATNKPERNGLFCER 60
Query: 23 IFGPVKN 3
IFGPVK+
Sbjct: 61 IFGPVKS 67
>ANZ53644.1 RNA polymerase beta subunit-1 (plastid) [Gnetum gnemon]
Length = 689
Score = 110 bits (276), Expect = 7e-26
Identities = 49/67 (73%), Positives = 60/67 (89%)
Frame = -2
Query: 203 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 24
MIDS+K+HQKL+ITLVSPEQIR W LPNG+++G+V NP+T+DL TNKP+RNGLFCER
Sbjct: 1 MIDSQKEHQKLQITLVSPEQIRVWSGTILPNGKRIGEVTNPKTMDLATNKPERNGLFCER 60
Query: 23 IFGPVKN 3
IFGPVK+
Sbjct: 61 IFGPVKS 67
>YP_001876573.1 RNA polymerase beta [Welwitschia mirabilis] B2Y1V6.1 RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
ABY26786.1 RNA polymerase beta (chloroplast)
[Welwitschia mirabilis] AMA21021.1 RpoC1 (plastid)
[Welwitschia mirabilis]
Length = 696
Score = 109 bits (273), Expect = 2e-25
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = -2
Query: 203 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 24
MIDSKKKHQKL+ITLVSPEQIRAW E LPNG++VG+V NP T+D T KP+R+GL+CER
Sbjct: 1 MIDSKKKHQKLKITLVSPEQIRAWSETILPNGKRVGEVTNPDTLDPTTKKPQRDGLYCER 60
Query: 23 IFGPVKN 3
IFGPVK+
Sbjct: 61 IFGPVKS 67
>BAH11232.1 RNA polymerase beta subunit-1 (chloroplast) [Welwitschia mirabilis]
Length = 698
Score = 109 bits (273), Expect = 2e-25
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = -2
Query: 203 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 24
MIDSKKKHQKL+ITLVSPEQIRAW E LPNG++VG+V NP T+D T KP+R+GL+CER
Sbjct: 1 MIDSKKKHQKLKITLVSPEQIRAWSETILPNGKRVGEVTNPDTLDPTTKKPQRDGLYCER 60
Query: 23 IFGPVKN 3
IFGPVK+
Sbjct: 61 IFGPVKS 67
>EPS74480.1 hypothetical protein M569_00269, partial [Genlisea aurea]
Length = 1213
Score = 90.1 bits (222), Expect(2) = 3e-23
Identities = 44/67 (65%), Positives = 52/67 (77%)
Frame = -2
Query: 203 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 24
MID + KHQ+LRI LVSPEQIRAW K LPNG+ VG+V P T TNKP+ +GLFCER
Sbjct: 1070 MID-RYKHQQLRIGLVSPEQIRAWATKILPNGKIVGEVTKPYTFHYKTNKPEMDGLFCER 1128
Query: 23 IFGPVKN 3
IFGP+K+
Sbjct: 1129 IFGPIKS 1135
Score = 45.4 bits (106), Expect(2) = 3e-23
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = -1
Query: 378 KILRSILDGHSVPKAETATESFRVLIRELRSLALELNHTI 259
++L + + G ++P + ESFR+L+RELRSLALELNH +
Sbjct: 1017 EVLGTTIIGGTIPNPQDTPESFRLLVRELRSLALELNHCL 1056
>YP_009144124.1 RNA polymerase beta subunit-1 (chloroplast) [Wollemia nobilis]
AKE36581.1 RNA polymerase beta subunit-1 (chloroplast)
[Wollemia nobilis]
Length = 763
Score = 98.6 bits (244), Expect = 2e-21
Identities = 46/67 (68%), Positives = 56/67 (83%)
Frame = -2
Query: 203 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 24
MID + KHQ+LRI L SPEQIRAW EK LPNGE+VG+V NP T+D TN+P+R+G FCER
Sbjct: 1 MID-QDKHQQLRIGLASPEQIRAWSEKILPNGERVGEVTNPDTLDFETNQPERDGSFCER 59
Query: 23 IFGPVKN 3
IFGP+K+
Sbjct: 60 IFGPIKS 66
>AJF42553.1 RNA polymerase beta subunit-1 (chloroplast) [Araucaria scopulorum]
Length = 797
Score = 98.6 bits (244), Expect = 2e-21
Identities = 46/67 (68%), Positives = 56/67 (83%)
Frame = -2
Query: 203 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 24
MID + KHQ+LRI L SPEQIRAW EK LPNGE+VG+V NP T+D TN+P+R+G FCER
Sbjct: 1 MID-QDKHQQLRIGLASPEQIRAWSEKILPNGERVGEVTNPDTLDFETNQPERDGSFCER 59
Query: 23 IFGPVKN 3
IFGP+K+
Sbjct: 60 IFGPIKS 66