BLASTX nr result
ID: Ephedra29_contig00025407
seq
BLASTX 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ephedra29_contig00025407 (413 letters) Database: ./nr 115,041,592 sequences; 42,171,959,267 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AJP06334.1 NRPD1a [Pinus tabuliformis] 76 2e-13 AJA90781.1 DNA-directed RNA polymerase IV largest subunit [Pinus... 74 8e-13 >AJP06334.1 NRPD1a [Pinus tabuliformis] Length = 1856 Score = 75.9 bits (185), Expect = 2e-13 Identities = 54/142 (38%), Positives = 76/142 (53%), Gaps = 9/142 (6%) Frame = +2 Query: 14 KFRNLKLPNILFMGSECCRNGCQYLCSNDKIFN-SVCVNFVAETSS------VLSQGNSE 172 K +L LP + CRN C +LC DK N ++C+ F+ E SS V+ + Sbjct: 1286 KCSSLNLPELFID----CRNPC-HLCVPDKAHNDTLCLVFLTEISSDTHLEDVIEYSEAV 1340 Query: 173 VEVLKLFSEVVIPKLLRIHVKGVQGVRSVVISGDQYSIAADT--NSKNGELVLLVEISSD 346 L + + +IPKLL + VKG + S+ I ++ S A + NSK GELV+ V +S Sbjct: 1341 TSSLDVIRDFLIPKLLDVVVKGHPNIDSLTIEWEENSWACEVMKNSKKGELVVTV-VSKG 1399 Query: 347 ISALNSWKLLLKHCEAVTDIID 412 I A WK LL CEA+TD+ID Sbjct: 1400 IQAGGLWKTLLNACEAITDLID 1421 >AJA90781.1 DNA-directed RNA polymerase IV largest subunit [Pinus canariensis] Length = 1821 Score = 74.3 bits (181), Expect = 8e-13 Identities = 53/142 (37%), Positives = 76/142 (53%), Gaps = 9/142 (6%) Frame = +2 Query: 14 KFRNLKLPNILFMGSECCRNGCQYLCSNDKIFN-SVCVNFVAETSS------VLSQGNSE 172 K +L LP + CRN C +LC DK N ++C+ F+ E SS V+ + Sbjct: 1286 KCSSLNLPELFID----CRNPC-HLCVPDKAHNDTLCLVFLTEISSDTHLEDVIEYSEAV 1340 Query: 173 VEVLKLFSEVVIPKLLRIHVKGVQGVRSVVISGDQYSIAADT--NSKNGELVLLVEISSD 346 L + + +IPKLL + VKG + S+ I ++ S A + NS+ GELV+ V +S Sbjct: 1341 TSSLDVIRDFLIPKLLDVVVKGHPNIDSLTIEWEENSWACEVMKNSEKGELVVTV-VSKG 1399 Query: 347 ISALNSWKLLLKHCEAVTDIID 412 I A WK LL CEA+TD+ID Sbjct: 1400 IQAGGLWKTLLNACEAITDLID 1421