BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra29_contig00025407
         (413 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJP06334.1 NRPD1a [Pinus tabuliformis]                                 76   2e-13
AJA90781.1 DNA-directed RNA polymerase IV largest subunit [Pinus...    74   8e-13

>AJP06334.1 NRPD1a [Pinus tabuliformis]
          Length = 1856

 Score = 75.9 bits (185), Expect = 2e-13
 Identities = 54/142 (38%), Positives = 76/142 (53%), Gaps = 9/142 (6%)
 Frame = +2

Query: 14   KFRNLKLPNILFMGSECCRNGCQYLCSNDKIFN-SVCVNFVAETSS------VLSQGNSE 172
            K  +L LP +       CRN C +LC  DK  N ++C+ F+ E SS      V+    + 
Sbjct: 1286 KCSSLNLPELFID----CRNPC-HLCVPDKAHNDTLCLVFLTEISSDTHLEDVIEYSEAV 1340

Query: 173  VEVLKLFSEVVIPKLLRIHVKGVQGVRSVVISGDQYSIAADT--NSKNGELVLLVEISSD 346
               L +  + +IPKLL + VKG   + S+ I  ++ S A +   NSK GELV+ V +S  
Sbjct: 1341 TSSLDVIRDFLIPKLLDVVVKGHPNIDSLTIEWEENSWACEVMKNSKKGELVVTV-VSKG 1399

Query: 347  ISALNSWKLLLKHCEAVTDIID 412
            I A   WK LL  CEA+TD+ID
Sbjct: 1400 IQAGGLWKTLLNACEAITDLID 1421


>AJA90781.1 DNA-directed RNA polymerase IV largest subunit [Pinus canariensis]
          Length = 1821

 Score = 74.3 bits (181), Expect = 8e-13
 Identities = 53/142 (37%), Positives = 76/142 (53%), Gaps = 9/142 (6%)
 Frame = +2

Query: 14   KFRNLKLPNILFMGSECCRNGCQYLCSNDKIFN-SVCVNFVAETSS------VLSQGNSE 172
            K  +L LP +       CRN C +LC  DK  N ++C+ F+ E SS      V+    + 
Sbjct: 1286 KCSSLNLPELFID----CRNPC-HLCVPDKAHNDTLCLVFLTEISSDTHLEDVIEYSEAV 1340

Query: 173  VEVLKLFSEVVIPKLLRIHVKGVQGVRSVVISGDQYSIAADT--NSKNGELVLLVEISSD 346
               L +  + +IPKLL + VKG   + S+ I  ++ S A +   NS+ GELV+ V +S  
Sbjct: 1341 TSSLDVIRDFLIPKLLDVVVKGHPNIDSLTIEWEENSWACEVMKNSEKGELVVTV-VSKG 1399

Query: 347  ISALNSWKLLLKHCEAVTDIID 412
            I A   WK LL  CEA+TD+ID
Sbjct: 1400 IQAGGLWKTLLNACEAITDLID 1421