BLASTX nr result
ID: Ephedra29_contig00024832
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra29_contig00024832
(360 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJA90786.1 RNA-dependent RNA polymerase 2 [Pinus canariensis] 130 8e-33
AJP06346.1 RDR2 [Pinus tabuliformis] 130 8e-33
AJA90770.1 RNA-dependent RNA polymerase 2 [Ephedra trifurca] 123 2e-30
AJA90762.1 RNA-dependent RNA polymerase 2 [Cycas revoluta] 122 8e-30
AJA90778.1 RNA-dependent RNA polymerase 2 [Ginkgo biloba] 119 5e-29
GAV63008.1 RdRP domain-containing protein [Cephalotus follicularis] 92 2e-19
OMO59796.1 RNA-dependent RNA polymerase, eukaryotic-type [Corcho... 90 2e-18
GAU19664.1 hypothetical protein TSUD_240120 [Trifolium subterran... 84 2e-18
XP_015581229.1 PREDICTED: RNA-dependent RNA polymerase 2 isoform... 88 8e-18
XP_002511431.1 PREDICTED: RNA-dependent RNA polymerase 2 isoform... 88 8e-18
JAT64931.1 RNA-dependent RNA polymerase 2 [Anthurium amnicola] 87 1e-17
XP_018831642.1 PREDICTED: RNA-dependent RNA polymerase 2 [Juglan... 87 1e-17
XP_008780950.1 PREDICTED: probable RNA-dependent RNA polymerase ... 87 1e-17
JAT59461.1 RNA-dependent RNA polymerase 2, partial [Anthurium am... 87 1e-17
OAY30901.1 hypothetical protein MANES_14G068000 [Manihot esculen... 87 1e-17
XP_006836643.1 PREDICTED: RNA-dependent RNA polymerase 2 [Ambore... 86 4e-17
XP_019703492.1 PREDICTED: probable RNA-dependent RNA polymerase ... 86 5e-17
XP_015882660.1 PREDICTED: RNA-dependent RNA polymerase 2 [Ziziph... 86 5e-17
KYP56281.1 putative RNA-dependent RNA polymerase 2 [Cajanus cajan] 85 7e-17
XP_012440441.1 PREDICTED: RNA-dependent RNA polymerase 2 [Gossyp... 85 7e-17
>AJA90786.1 RNA-dependent RNA polymerase 2 [Pinus canariensis]
Length = 1114
Score = 130 bits (327), Expect = 8e-33
Identities = 55/100 (55%), Positives = 76/100 (76%)
Frame = +2
Query: 2 QNEAEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAF 181
Q+EAE++ G+I+ SK F +EKK+YG +K+++ +R LRN+A WF C+VHRKDSA
Sbjct: 1013 QSEAEILSGNIIHFSKFFDKEKKRYGDIKEKVMVAVRALRNEARAWFQETCRVHRKDSAL 1072
Query: 182 ASAWYHVTYHPNYWSEGSLLSFPWIKYKLLLNIKRFNETK 301
A AWYHVTYHP+YW+E +SFPW+ Y +LLN+K+FN K
Sbjct: 1073 ACAWYHVTYHPDYWTEVHFISFPWVVYDVLLNVKKFNHLK 1112
>AJP06346.1 RDR2 [Pinus tabuliformis]
Length = 1123
Score = 130 bits (327), Expect = 8e-33
Identities = 55/100 (55%), Positives = 76/100 (76%)
Frame = +2
Query: 2 QNEAEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAF 181
Q+EAE++ G+I+ SK F +EKK+YG +K+++ +R LRN+A WF C+VHRKDSA
Sbjct: 1022 QSEAEILSGNIIHFSKFFDKEKKRYGDIKEKVMVAVRALRNEARAWFQETCRVHRKDSAL 1081
Query: 182 ASAWYHVTYHPNYWSEGSLLSFPWIKYKLLLNIKRFNETK 301
A AWYHVTYHP+YW+E +SFPW+ Y +LLN+K+FN K
Sbjct: 1082 ACAWYHVTYHPDYWTEVHFISFPWVVYDVLLNVKKFNHLK 1121
>AJA90770.1 RNA-dependent RNA polymerase 2 [Ephedra trifurca]
Length = 1111
Score = 123 bits (309), Expect = 2e-30
Identities = 56/100 (56%), Positives = 71/100 (71%)
Frame = +2
Query: 2 QNEAEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAF 181
QNEAEMI G+I S+ I EKKK+ K +I + LR +A WF CK+H K+ A
Sbjct: 1009 QNEAEMISGNIRMPSRGTINEKKKHSDRKDKILMAVEALRIEARGWFDESCKLHHKNFAL 1068
Query: 182 ASAWYHVTYHPNYWSEGSLLSFPWIKYKLLLNIKRFNETK 301
ASAWYHVTYH +YWS+G+L+SFPWI+Y LLL KR+N+TK
Sbjct: 1069 ASAWYHVTYHSSYWSKGNLISFPWIRYDLLLKTKRYNDTK 1108
>AJA90762.1 RNA-dependent RNA polymerase 2 [Cycas revoluta]
Length = 1117
Score = 122 bits (305), Expect = 8e-30
Identities = 52/100 (52%), Positives = 73/100 (73%)
Frame = +2
Query: 2 QNEAEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAF 181
++EAE++ G+I + SK F ++KKKYG +K++I +R LR +A WF + CKVH SA
Sbjct: 1014 KSEAEIVSGNINRFSKFFEKDKKKYGDIKEKIMVAVRSLRKEARGWFEDSCKVHHNHSAM 1073
Query: 182 ASAWYHVTYHPNYWSEGSLLSFPWIKYKLLLNIKRFNETK 301
ASAWYHVTYHP+YW++ +SFPW+ Y +LLNIK N+ K
Sbjct: 1074 ASAWYHVTYHPDYWTKVHFISFPWVIYDILLNIKSLNQRK 1113
>AJA90778.1 RNA-dependent RNA polymerase 2 [Ginkgo biloba]
Length = 1114
Score = 119 bits (299), Expect = 5e-29
Identities = 49/98 (50%), Positives = 73/98 (74%)
Frame = +2
Query: 2 QNEAEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAF 181
Q+EAE++ G+I + SK F +EK++YG +K++I ++ LR +A WF + CK H D+A
Sbjct: 1014 QSEAEIVGGNINRFSKFFDKEKRRYGDIKEKIMVAVKSLRTEARGWFQDSCKEHHNDAAI 1073
Query: 182 ASAWYHVTYHPNYWSEGSLLSFPWIKYKLLLNIKRFNE 295
A AWYHVTYHP+YW++G +SFPW+ Y +LLNIK+ N+
Sbjct: 1074 ACAWYHVTYHPDYWTQGHFISFPWVIYDVLLNIKKNNQ 1111
>GAV63008.1 RdRP domain-containing protein [Cephalotus follicularis]
Length = 1120
Score = 92.4 bits (228), Expect = 2e-19
Identities = 45/102 (44%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Frame = +2
Query: 2 QNEAEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAF 181
+ E E++ G++ + R+ ++YG MK I E IR L+ +A WF + CKV+ +
Sbjct: 1018 ETEDEILTGNLRNKAMYIQRDNRRYGEMKDRILESIRCLQKEAKKWFESSCKVN-EHQLL 1076
Query: 182 ASAWYHVTYHPNYWSEG-SLLSFPWIKYKLLLNIKRFNETKA 304
ASAWYHVTYHP+Y+ +G + LS PWI +LLNIK FN K+
Sbjct: 1077 ASAWYHVTYHPSYYRQGWNCLSLPWIVGDILLNIKSFNSRKS 1118
>OMO59796.1 RNA-dependent RNA polymerase, eukaryotic-type [Corchorus olitorius]
Length = 957
Score = 89.7 bits (221), Expect = 2e-18
Identities = 46/109 (42%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
Frame = +2
Query: 2 QNEAEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAF 181
++E E++ G++ + +R+ ++YG MK I +++L+ +A WF N CK +
Sbjct: 828 KSEDEILTGNMRNKAMFLLRDNRRYGEMKDRILLAVKNLQREAREWFENGCKAGER-QRL 886
Query: 182 ASAWYHVTYHPNYWSEG-SLLSFPWIKYKLLLNIKRFNETKACQQREAP 325
ASAWYHVTYHPNY EG + LSFPWI +LL IK N + QRE P
Sbjct: 887 ASAWYHVTYHPNYNREGMNFLSFPWIVGNILLEIKSVNSREI--QREKP 933
>GAU19664.1 hypothetical protein TSUD_240120 [Trifolium subterraneum]
Length = 117
Score = 83.6 bits (205), Expect = 2e-18
Identities = 41/98 (41%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Frame = +2
Query: 2 QNEAEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAF 181
+ E EM+ G++ + R+ ++YG MK I ++DL+ +A WF + C+ H +
Sbjct: 16 ETEDEMLTGNLQNRAFYLQRDNRRYGDMKDRILIAVKDLQREAKEWFESDCQPHERP-LM 74
Query: 182 ASAWYHVTYHPNYWSEGS-LLSFPWIKYKLLLNIKRFN 292
ASAWYHVTYH Y+ E S LSFPWI +LL+IK N
Sbjct: 75 ASAWYHVTYHTKYYRENSTFLSFPWINGDILLHIKSAN 112
>XP_015581229.1 PREDICTED: RNA-dependent RNA polymerase 2 isoform X2 [Ricinus
communis]
Length = 930
Score = 87.8 bits (216), Expect = 8e-18
Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
Frame = +2
Query: 2 QNEAEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAF 181
+ E E++ G++ + R+ ++YG K I ++ L+ +A WF +CC+ K
Sbjct: 812 KKEDEILTGNLQNKAMYLQRDNRRYGDTKDRILISVKSLQKEAKEWFESCCQAKEK-QRL 870
Query: 182 ASAWYHVTYHPNYWSEG-SLLSFPWIKYKLLLNIKRFN 292
ASAWYHVTYHP+Y+ EG + LSFPWI +LLNIK N
Sbjct: 871 ASAWYHVTYHPSYFQEGITCLSFPWIVADILLNIKSAN 908
>XP_002511431.1 PREDICTED: RNA-dependent RNA polymerase 2 isoform X1 [Ricinus
communis] EEF52033.1 RNA-dependent RNA polymerase,
putative [Ricinus communis]
Length = 983
Score = 87.8 bits (216), Expect = 8e-18
Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
Frame = +2
Query: 2 QNEAEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAF 181
+ E E++ G++ + R+ ++YG K I ++ L+ +A WF +CC+ K
Sbjct: 865 KKEDEILTGNLQNKAMYLQRDNRRYGDTKDRILISVKSLQKEAKEWFESCCQAKEK-QRL 923
Query: 182 ASAWYHVTYHPNYWSEG-SLLSFPWIKYKLLLNIKRFN 292
ASAWYHVTYHP+Y+ EG + LSFPWI +LLNIK N
Sbjct: 924 ASAWYHVTYHPSYFQEGITCLSFPWIVADILLNIKSAN 961
>JAT64931.1 RNA-dependent RNA polymerase 2 [Anthurium amnicola]
Length = 601
Score = 87.4 bits (215), Expect = 1e-17
Identities = 40/93 (43%), Positives = 57/93 (61%)
Frame = +2
Query: 5 NEAEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAFA 184
+E E++ G++ R+KKKY +K I IR+L + WF++CC + A
Sbjct: 503 SEDEILTGNLRNRLTYLQRDKKKYAEVKDRILVGIRNLHKEVEGWFVSCC-CQQDQPKMA 561
Query: 185 SAWYHVTYHPNYWSEGSLLSFPWIKYKLLLNIK 283
SAWYHVTYHP+Y+S + LSFPWI +LL+IK
Sbjct: 562 SAWYHVTYHPDYYSRSNFLSFPWILCDILLSIK 594
>XP_018831642.1 PREDICTED: RNA-dependent RNA polymerase 2 [Juglans regia]
Length = 1110
Score = 87.4 bits (215), Expect = 1e-17
Identities = 43/101 (42%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Frame = +2
Query: 2 QNEAEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAF 181
+NE E++ G++ R+ +KYG MK I ++ L+N+A W + CK H +
Sbjct: 1008 ENEDEILTGNLRNREAYLQRDNRKYGDMKDRILHSVKRLQNEAKEWVESSCKNH-EHQQL 1066
Query: 182 ASAWYHVTYHPNYWSEG-SLLSFPWIKYKLLLNIKRFNETK 301
ASAWYHV++HP+Y EG + LSFPWI +LLNIK N K
Sbjct: 1067 ASAWYHVSFHPSYSREGFNCLSFPWILGDILLNIKSVNSRK 1107
>XP_008780950.1 PREDICTED: probable RNA-dependent RNA polymerase 2 [Phoenix
dactylifera]
Length = 1117
Score = 87.4 bits (215), Expect = 1e-17
Identities = 42/94 (44%), Positives = 57/94 (60%)
Frame = +2
Query: 2 QNEAEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAF 181
++E E++ G++ S R+KKKYG MK I ++ L + WF + C V +
Sbjct: 1010 EHEDEILTGNLRSRSMYLQRDKKKYGEMKDRILIGVKSLHKEVQGWFKSSC-VESESLRM 1068
Query: 182 ASAWYHVTYHPNYWSEGSLLSFPWIKYKLLLNIK 283
ASAWYHVTYHP+Y+SE LSFPWI LL+IK
Sbjct: 1069 ASAWYHVTYHPSYYSENRFLSFPWILSDALLSIK 1102
>JAT59461.1 RNA-dependent RNA polymerase 2, partial [Anthurium amnicola]
Length = 1132
Score = 87.4 bits (215), Expect = 1e-17
Identities = 40/93 (43%), Positives = 57/93 (61%)
Frame = +2
Query: 5 NEAEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAFA 184
+E E++ G++ R+KKKY +K I IR+L + WF++CC + A
Sbjct: 1034 SEDEILTGNLRNRLTYLQRDKKKYAEVKDRILVGIRNLHKEVEGWFVSCC-CQQDQPKMA 1092
Query: 185 SAWYHVTYHPNYWSEGSLLSFPWIKYKLLLNIK 283
SAWYHVTYHP+Y+S + LSFPWI +LL+IK
Sbjct: 1093 SAWYHVTYHPDYYSRSNFLSFPWILCDILLSIK 1125
>OAY30901.1 hypothetical protein MANES_14G068000 [Manihot esculenta] OAY30902.1
hypothetical protein MANES_14G068000 [Manihot esculenta]
Length = 1120
Score = 87.0 bits (214), Expect = 1e-17
Identities = 41/99 (41%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Frame = +2
Query: 8 EAEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAFAS 187
E E++ G++ K + R+ ++YG MK I ++ L+N+ WF + C+ ++ AS
Sbjct: 1020 EDEILTGNLRKKAMYLQRDNRRYGDMKDRIMLSLKSLQNEVKEWFESSCQ-PKEHQPLAS 1078
Query: 188 AWYHVTYHPNYWSEG-SLLSFPWIKYKLLLNIKRFNETK 301
AWYHVTYHP+Y+ EG + LSFPWI +LLNIK N +
Sbjct: 1079 AWYHVTYHPSYFQEGVNCLSFPWIVGDILLNIKSANSKR 1117
>XP_006836643.1 PREDICTED: RNA-dependent RNA polymerase 2 [Amborella trichopoda]
ERM99496.1 hypothetical protein AMTR_s00088p00026960
[Amborella trichopoda]
Length = 1107
Score = 85.9 bits (211), Expect = 4e-17
Identities = 40/96 (41%), Positives = 64/96 (66%)
Frame = +2
Query: 2 QNEAEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAF 181
++E+E++ G+I K S R+ +KYG +K I +++L+ +A WF + C+ ++ S
Sbjct: 1008 ESESEILSGNISKKSGYLQRDNRKYGEVKDRILIAVKNLQREAQGWFKSSCEPNQS-SKL 1066
Query: 182 ASAWYHVTYHPNYWSEGSLLSFPWIKYKLLLNIKRF 289
ASAWYHVTY P+++S+ + SFPWI +LLNIK F
Sbjct: 1067 ASAWYHVTYRPDHFSKVNFFSFPWILADVLLNIKAF 1102
>XP_019703492.1 PREDICTED: probable RNA-dependent RNA polymerase 2 [Elaeis
guineensis]
Length = 1117
Score = 85.5 bits (210), Expect = 5e-17
Identities = 41/94 (43%), Positives = 55/94 (58%)
Frame = +2
Query: 2 QNEAEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAF 181
++E E++ G++ S R+KKKYG MK I ++ L + WF C +
Sbjct: 1010 EHEDEILTGNLRSRSMYLQRDKKKYGEMKDRILLGVKSLHKEVQGWFKRSC-AESESLRM 1068
Query: 182 ASAWYHVTYHPNYWSEGSLLSFPWIKYKLLLNIK 283
ASAWYHVTYHP+Y+SE LSFPWI LL+IK
Sbjct: 1069 ASAWYHVTYHPSYYSENRFLSFPWILSDALLSIK 1102
>XP_015882660.1 PREDICTED: RNA-dependent RNA polymerase 2 [Ziziphus jujuba]
Length = 1121
Score = 85.5 bits (210), Expect = 5e-17
Identities = 43/101 (42%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Frame = +2
Query: 2 QNEAEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAF 181
+ E E++ G++ K + R+ +Y MK I ++ L+ +A WF + CK H
Sbjct: 1019 ETEDEILTGNLRKRAAYLQRDNIRYRDMKDRILLSLKSLQKEAKEWFHSSCKEHEYQQ-M 1077
Query: 182 ASAWYHVTYHPNYWSEG-SLLSFPWIKYKLLLNIKRFNETK 301
ASAWYHVTYHPN+ EG LSFPWIK +LLNIK N +
Sbjct: 1078 ASAWYHVTYHPNFSREGMKCLSFPWIKGDILLNIKSVNSLR 1118
>KYP56281.1 putative RNA-dependent RNA polymerase 2 [Cajanus cajan]
Length = 1120
Score = 85.1 bits (209), Expect = 7e-17
Identities = 42/99 (42%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Frame = +2
Query: 2 QNEAEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAF 181
+ E EM++G++ + R+ ++YG MK I +R L+ +A WF N C+ R+
Sbjct: 1019 ETENEMLLGNLQNRASYLQRDNRRYGDMKDRILLSVRGLQREAKEWFENSCQ-PREYQRM 1077
Query: 182 ASAWYHVTYHPNYWSEG-SLLSFPWIKYKLLLNIKRFNE 295
ASAWYHVTYHP+Y +E LSFPWI +LL IK N+
Sbjct: 1078 ASAWYHVTYHPSYCNESLCFLSFPWIVGDILLQIKYVNK 1116
>XP_012440441.1 PREDICTED: RNA-dependent RNA polymerase 2 [Gossypium raimondii]
KJB53208.1 hypothetical protein B456_008G296900
[Gossypium raimondii]
Length = 1147
Score = 85.1 bits (209), Expect = 7e-17
Identities = 39/97 (40%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Frame = +2
Query: 8 EAEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAFAS 187
E E++ G+I ++ +R+ ++YG MK+ I ++DL+ +A WF + C + AS
Sbjct: 1017 EDEILTGNIYNKAQFLLRDNRRYGEMKERIVLSVKDLQREAKEWFKSSCSKADEHQKLAS 1076
Query: 188 AWYHVTYHPNYWSEG-SLLSFPWIKYKLLLNIKRFNE 295
AWY+VTYHPNY+ E + LSFPWI +LL +K N+
Sbjct: 1077 AWYYVTYHPNYFQERMNSLSFPWIVGDILLRVKSRNK 1113