BLASTX nr result
ID: Ephedra29_contig00024768
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra29_contig00024768
(404 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
JAU79295.1 Retrovirus-related Pol polyprotein from transposon TN... 116 1e-28
KYP66486.1 Retrovirus-related Pol polyprotein from transposon TN... 117 6e-28
XP_012075359.1 PREDICTED: uncharacterized protein LOC105636646 [... 116 1e-27
KOM46784.1 hypothetical protein LR48_Vigan07g048800 [Vigna angul... 107 1e-27
OMO51796.1 Reverse transcriptase, RNA-dependent DNA polymerase [... 116 1e-27
AAR96002.1 retrotransposon-like protein [Musa acuminata] 115 1e-27
KYP40338.1 Retrovirus-related Pol polyprotein from transposon TN... 115 3e-27
XP_016206738.1 PREDICTED: LOW QUALITY PROTEIN: alpha-L-arabinofu... 115 3e-27
KYP40337.1 Retrovirus-related Pol polyprotein from transposon TN... 115 3e-27
KFK32108.1 hypothetical protein AALP_AA6G199700 [Arabis alpina] 115 3e-27
KYP48956.1 Retrovirus-related Pol polyprotein from transposon TN... 108 3e-27
KOM57411.1 hypothetical protein LR48_Vigan11g044400 [Vigna angul... 107 5e-27
KYP49409.1 Retrovirus-related Pol polyprotein from transposon TN... 107 5e-27
KZV39824.1 hypothetical protein F511_27827 [Dorcoceras hygrometr... 110 1e-26
P10978.1 RecName: Full=Retrovirus-related Pol polyprotein from t... 113 1e-26
AAV88069.1 hypothetical retrotransposon [Ipomoea batatas] 112 3e-26
KYP33202.1 Retrovirus-related Pol polyprotein from transposon TN... 107 6e-26
KYP48282.1 Retrovirus-related Pol polyprotein from transposon TN... 111 7e-26
KYP55451.1 Retrovirus-related Pol polyprotein from transposon TN... 103 1e-25
KYP59969.1 Retrovirus-related Pol polyprotein from transposon TN... 107 2e-25
>JAU79295.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Noccaea caerulescens]
Length = 382
Score = 116 bits (291), Expect = 1e-28
Identities = 52/121 (42%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Frame = +3
Query: 6 SPHAAIDGKIPELEWSGSKISYSHLRVFGCEAYVHVPKENRSKIESRARKCIFLGYGGDN 185
SP A ++G +PE W+G +SY HL+VFGC+A+VH+PK+ RSK+E ++R+C+F+GYG D
Sbjct: 85 SPSAPLEGDVPERVWTGKDVSYGHLKVFGCKAFVHIPKDERSKLEMKSRQCVFIGYGKDE 144
Query: 186 LGYRLWDPETKQVVRSRDVKFREDTMYYPKKGEDRPEGVVDGSIQSQPIKVTT-HDSNDS 362
GYR +DP K+++RSRDV F E+ +P + I S+ + T+ H +S
Sbjct: 145 FGYRFYDPVEKKLIRSRDVVFMENQTIKDIDKPGKPAQSFESLIDSEVVPSTSVHGEVES 204
Query: 363 E 365
E
Sbjct: 205 E 205
>KYP66486.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1321
Score = 117 bits (293), Expect = 6e-28
Identities = 51/103 (49%), Positives = 71/103 (68%)
Frame = +3
Query: 3 RSPHAAIDGKIPELEWSGSKISYSHLRVFGCEAYVHVPKENRSKIESRARKCIFLGYGGD 182
R P + IPE W+G ++SYSHL+VFGC+A++HVPKE RSK++ +A C+F+GYG +
Sbjct: 616 RLPSVPLGFDIPERVWAGKEVSYSHLKVFGCKAFMHVPKEQRSKLDDKAIPCVFVGYGNE 675
Query: 183 NLGYRLWDPETKQVVRSRDVKFREDTMYYPKKGEDRPEGVVDG 311
GY+LWDPE K++VRSRDV F E KG + + + DG
Sbjct: 676 EFGYKLWDPERKRIVRSRDVIFHEHETIEDLKGGEAAKPMEDG 718
>XP_012075359.1 PREDICTED: uncharacterized protein LOC105636646 [Jatropha curcas]
Length = 1180
Score = 116 bits (291), Expect = 1e-27
Identities = 58/117 (49%), Positives = 76/117 (64%)
Frame = +3
Query: 3 RSPHAAIDGKIPELEWSGSKISYSHLRVFGCEAYVHVPKENRSKIESRARKCIFLGYGGD 182
R P A +D IPE W+G ISYSHLRVFGC+A++HVPKE RSK+++++ F+GYG +
Sbjct: 1058 RLPSALLDFDIPEKVWAGRNISYSHLRVFGCKAFMHVPKEQRSKLDNKSVPYTFVGYGDE 1117
Query: 183 NLGYRLWDPETKQVVRSRDVKFREDTMYYPKKGEDRPEGVVDGSIQSQPIKVTTHDS 353
GYRLWDP K+VVRSRDV F E+ + E E DG I P + T+D+
Sbjct: 1118 EFGYRLWDPVKKKVVRSRDVVFHENEIVADTTCE---ESTSDGVIDITPGSIPTNDA 1171
>KOM46784.1 hypothetical protein LR48_Vigan07g048800 [Vigna angularis]
Length = 126
Score = 107 bits (268), Expect = 1e-27
Identities = 46/84 (54%), Positives = 61/84 (72%)
Frame = +3
Query: 3 RSPHAAIDGKIPELEWSGSKISYSHLRVFGCEAYVHVPKENRSKIESRARKCIFLGYGGD 182
RSP ++ KIPE WSG ++ SHLRVFGC AYVH+ + R+K++ +++KC FLGYG D
Sbjct: 36 RSPSVPLEHKIPEEVWSGKEVKLSHLRVFGCVAYVHISDQVRNKLDPKSKKCTFLGYGED 95
Query: 183 NLGYRLWDPETKQVVRSRDVKFRE 254
GYR+WD E K++ RSRDV F E
Sbjct: 96 EFGYRIWDDENKKMTRSRDVIFNE 119
>OMO51796.1 Reverse transcriptase, RNA-dependent DNA polymerase [Corchorus
capsularis]
Length = 1500
Score = 116 bits (290), Expect = 1e-27
Identities = 55/119 (46%), Positives = 72/119 (60%)
Frame = +3
Query: 3 RSPHAAIDGKIPELEWSGSKISYSHLRVFGCEAYVHVPKENRSKIESRARKCIFLGYGGD 182
RSP A + IPE WS SY+HL+VFGC+A++HVPKE RSK++S+ CIF+GYGG+
Sbjct: 735 RSPSAPLGFDIPEKVWSDKNPSYAHLKVFGCKAFLHVPKEQRSKLDSKVTPCIFVGYGGE 794
Query: 183 NLGYRLWDPETKQVVRSRDVKFREDTMYYPKKGEDRPEGVVDGSIQSQPIKVTTHDSND 359
GYR WDPE K +VRSRDV F E + +++ VV P V + D
Sbjct: 795 EFGYRFWDPEKKNIVRSRDVVFHEHETIADFEKKEKTSRVVHDDDDLTPTTVPPRRATD 853
>AAR96002.1 retrotransposon-like protein [Musa acuminata]
Length = 521
Score = 115 bits (288), Expect = 1e-27
Identities = 50/95 (52%), Positives = 68/95 (71%), Gaps = 3/95 (3%)
Frame = +3
Query: 21 IDGKIPELEWSGSKISYSHLRVFGCEAYVHVPKENRSKIESRARKCIFLGYGGDNLGYRL 200
+ G + E W G ISY+HLRVFGC+A+VH+PK+ RSK++++A+ CIFLGYG + GYRL
Sbjct: 355 LKGDVQERVWRGKDISYNHLRVFGCKAFVHIPKDERSKLDNKAKACIFLGYGHEEFGYRL 414
Query: 201 WDPETKQVVRSRDVKFREDTMY---YPKKGEDRPE 296
WDP K+++RSRDV F ED ++ Y G D E
Sbjct: 415 WDPVNKKIIRSRDVVFLEDQLFDDVYDDHGGDEQE 449
>KYP40338.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 864
Score = 115 bits (288), Expect = 3e-27
Identities = 52/119 (43%), Positives = 74/119 (62%), Gaps = 8/119 (6%)
Frame = +3
Query: 3 RSPHAAIDGKIPELEWSGSKISYSHLRVFGCEAYVHVPKENRSKIESRARKCIFLGYGGD 182
R P ++ KIPE WSG ++ SHLRVFGC AYVH+ + R+K++ +++KC F+GYG D
Sbjct: 590 RGPSVPLEHKIPEEVWSGKEVKLSHLRVFGCVAYVHISDQGRNKLDPKSKKCTFIGYGED 649
Query: 183 NLGYRLWDPETKQVVRSRDVKFREDTMYYPKKGEDRPEG--------VVDGSIQSQPIK 335
GYRLWD E K+++RSRDV F E MY K+ VD +++S P++
Sbjct: 650 EFGYRLWDDENKKMIRSRDVIFNEGVMYKDKQNTSASNSKPIEPTYVEVDDALESPPVE 708
>XP_016206738.1 PREDICTED: LOW QUALITY PROTEIN: alpha-L-arabinofuranosidase 1-like
[Arachis ipaensis]
Length = 976
Score = 115 bits (288), Expect = 3e-27
Identities = 48/103 (46%), Positives = 71/103 (68%)
Frame = +3
Query: 21 IDGKIPELEWSGSKISYSHLRVFGCEAYVHVPKENRSKIESRARKCIFLGYGGDNLGYRL 200
++G +PE W G + YSHLRVF C A+VH+P++ RSK++ ++++CIF+GYG ++ GYRL
Sbjct: 16 LNGDVPEKVWRGKDVFYSHLRVFDCRAFVHIPRDERSKLDGKSKQCIFMGYGHEDFGYRL 75
Query: 201 WDPETKQVVRSRDVKFREDTMYYPKKGEDRPEGVVDGSIQSQP 329
WDP +K+++RSRDV F ED K D+P V S +P
Sbjct: 76 WDPVSKKIIRSRDVIFLEDQTIEDLKKTDKPTITVRRSADDEP 118
>KYP40337.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1269
Score = 115 bits (288), Expect = 3e-27
Identities = 52/119 (43%), Positives = 74/119 (62%), Gaps = 8/119 (6%)
Frame = +3
Query: 3 RSPHAAIDGKIPELEWSGSKISYSHLRVFGCEAYVHVPKENRSKIESRARKCIFLGYGGD 182
R P ++ KIPE WSG ++ SHLRVFGC AYVH+ + R+K++ +++KC F+GYG D
Sbjct: 590 RGPSVPLEHKIPEEVWSGKEVKLSHLRVFGCVAYVHISDQGRNKLDPKSKKCTFIGYGED 649
Query: 183 NLGYRLWDPETKQVVRSRDVKFREDTMYYPKKGEDRPEG--------VVDGSIQSQPIK 335
GYRLWD E K+++RSRDV F E MY K+ VD +++S P++
Sbjct: 650 EFGYRLWDDENKKMIRSRDVIFNEGVMYKDKQNTSASNSKPIEPTYVEVDDALESPPVE 708
>KFK32108.1 hypothetical protein AALP_AA6G199700 [Arabis alpina]
Length = 1415
Score = 115 bits (288), Expect = 3e-27
Identities = 55/121 (45%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Frame = +3
Query: 6 SPHAAIDGKIPELEWSGSKISYSHLRVFGCEAYVHVPKENRSKIESRARKCIFLGYGGDN 185
SP A ++G IPE W+G +SYSHLRV GC+A+VH+PK+ RSK+E ++R+C+F+GYG
Sbjct: 383 SPSAPLEGDIPERVWTGKDVSYSHLRVCGCKAFVHIPKDERSKLEMKSRQCVFIGYGLVE 442
Query: 186 LGYRLWDPETKQVVRSRDVKFREDTMYYPKKGEDRPEGVVDGSIQSQPIKVTT-HDSNDS 362
GYR +DP TK+++RSRDV F ED +P + I S+ + T+ H +S
Sbjct: 443 FGYRFYDPVTKKLIRSRDVVFMEDQTIKDIDKSGKPAQRYECLIDSEVVPSTSVHGQVES 502
Query: 363 E 365
E
Sbjct: 503 E 503
>KYP48956.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 189
Score = 108 bits (270), Expect = 3e-27
Identities = 43/84 (51%), Positives = 64/84 (76%)
Frame = +3
Query: 6 SPHAAIDGKIPELEWSGSKISYSHLRVFGCEAYVHVPKENRSKIESRARKCIFLGYGGDN 185
+P ++ ++P+ W G SY HLRVFGC+A+VH+P++ RSK++++ R+CIF+GYG D
Sbjct: 37 TPTVILNSEVPDKIWFGKNASYDHLRVFGCKAFVHIPRDERSKLDTKTRQCIFIGYGEDE 96
Query: 186 LGYRLWDPETKQVVRSRDVKFRED 257
GYR +DP K++VRSRDV+F ED
Sbjct: 97 FGYRFYDPVEKKLVRSRDVQFMED 120
>KOM57411.1 hypothetical protein LR48_Vigan11g044400 [Vigna angularis]
Length = 179
Score = 107 bits (268), Expect = 5e-27
Identities = 46/84 (54%), Positives = 61/84 (72%)
Frame = +3
Query: 3 RSPHAAIDGKIPELEWSGSKISYSHLRVFGCEAYVHVPKENRSKIESRARKCIFLGYGGD 182
RSP ++ KIPE WSG ++ SHLRVFGC AYVH+ + R+K++ +++KC FLGYG D
Sbjct: 89 RSPSVPLEHKIPEEVWSGKEVKLSHLRVFGCVAYVHISDQVRNKLDPKSKKCTFLGYGED 148
Query: 183 NLGYRLWDPETKQVVRSRDVKFRE 254
GYR+WD E K++ RSRDV F E
Sbjct: 149 EFGYRIWDDENKKMTRSRDVIFNE 172
>KYP49409.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 166
Score = 107 bits (267), Expect = 5e-27
Identities = 51/121 (42%), Positives = 79/121 (65%), Gaps = 6/121 (4%)
Frame = +3
Query: 6 SPHAAIDGKIPELEWSGSKISYSHLRVFGCEAYVHVPKENRSKIESRARK-----CIFLG 170
SP A++ ++P+ W G +SY HL VF C+A+VHVPK+ RSK++++ R+ CIF+G
Sbjct: 37 SPVYALNSEVPDKIWFGKNVSYDHLHVFSCKAFVHVPKDERSKLDAKTRQCIFGLCIFIG 96
Query: 171 YGGDNLGYRLWDPETKQVVRSRDVKFREDTMYYPKKGEDRPEGVVDGSIQS-QPIKVTTH 347
YG D LGYRL+DP K++VRSRDV+F ED ++ DG++ PI+++ +
Sbjct: 97 YGQDELGYRLYDPVEKKLVRSRDVQFMEDQTIEDIDKMEKSTPKEDGNVADVDPIRLSAN 156
Query: 348 D 350
+
Sbjct: 157 E 157
>KZV39824.1 hypothetical protein F511_27827 [Dorcoceras hygrometricum]
Length = 325
Score = 110 bits (275), Expect = 1e-26
Identities = 49/84 (58%), Positives = 61/84 (72%)
Frame = +3
Query: 3 RSPHAAIDGKIPELEWSGSKISYSHLRVFGCEAYVHVPKENRSKIESRARKCIFLGYGGD 182
RSP ++ ++PE WSG SYSHLRVFGC AY HV KE R K+++R CIF+GYG +
Sbjct: 36 RSPSVPLNFEVPEKLWSGKDPSYSHLRVFGCLAYAHVSKELRQKLDARTTPCIFVGYGDE 95
Query: 183 NLGYRLWDPETKQVVRSRDVKFRE 254
GYRLWDP+ K+V+RSRDV F E
Sbjct: 96 EFGYRLWDPKEKKVIRSRDVVFHE 119
>P10978.1 RecName: Full=Retrovirus-related Pol polyprotein from transposon
TNT 1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease CAA32025.1 unnamed protein product
[Nicotiana tabacum]
Length = 1328
Score = 113 bits (283), Expect = 1e-26
Identities = 52/105 (49%), Positives = 71/105 (67%)
Frame = +3
Query: 3 RSPHAAIDGKIPELEWSGSKISYSHLRVFGCEAYVHVPKENRSKIESRARKCIFLGYGGD 182
RSP + +IPE W+ ++SYSHL+VFGC A+ HVPKE R+K++ ++ CIF+GYG +
Sbjct: 623 RSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDE 682
Query: 183 NLGYRLWDPETKQVVRSRDVKFREDTMYYPKKGEDRPEGVVDGSI 317
GYRLWDP K+V+RSRDV FRE + + D E V +G I
Sbjct: 683 EFGYRLWDPVKKKVIRSRDVVFRESEV---RTAADMSEKVKNGII 724
>AAV88069.1 hypothetical retrotransposon [Ipomoea batatas]
Length = 1415
Score = 112 bits (280), Expect = 3e-26
Identities = 51/104 (49%), Positives = 71/104 (68%)
Frame = +3
Query: 6 SPHAAIDGKIPELEWSGSKISYSHLRVFGCEAYVHVPKENRSKIESRARKCIFLGYGGDN 185
SP A+ ++P+ W G +SY HLRVFGC+A+VHVP++ RSK++S+ R+CIF+GYG D
Sbjct: 619 SPVIALKNEVPDKVWCGKDVSYDHLRVFGCKAFVHVPRDERSKLDSKTRQCIFIGYGFDE 678
Query: 186 LGYRLWDPETKQVVRSRDVKFREDTMYYPKKGEDRPEGVVDGSI 317
GYRL+DP K++VRSRDV F E+ +PE GS+
Sbjct: 679 FGYRLYDPVEKKLVRSRDVVFFENQTIEDIDKVKQPESRDSGSL 722
>KYP33202.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 269
Score = 107 bits (267), Expect = 6e-26
Identities = 42/84 (50%), Positives = 64/84 (76%)
Frame = +3
Query: 6 SPHAAIDGKIPELEWSGSKISYSHLRVFGCEAYVHVPKENRSKIESRARKCIFLGYGGDN 185
+P ++ ++P+ W G SY HLRVFGC+A+VH+P++ RSK++++ R+CIF+GYG D
Sbjct: 37 TPTVILNSEVPDKIWFGKNASYDHLRVFGCKAFVHIPRDERSKLDTKTRQCIFIGYGEDE 96
Query: 186 LGYRLWDPETKQVVRSRDVKFRED 257
GYR +DP K++V+SRDV+F ED
Sbjct: 97 FGYRFYDPVEKKLVKSRDVQFMED 120
>KYP48282.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 663
Score = 111 bits (277), Expect = 7e-26
Identities = 51/120 (42%), Positives = 74/120 (61%)
Frame = +3
Query: 3 RSPHAAIDGKIPELEWSGSKISYSHLRVFGCEAYVHVPKENRSKIESRARKCIFLGYGGD 182
R P ++ +IPE WSG ++ +HLRVFGC AYVH+ + R+K++ +++KC +GYG D
Sbjct: 36 RGPSVPLEYRIPEEVWSGKEVKLTHLRVFGCVAYVHISDQGRNKLDPKSKKCTLIGYGED 95
Query: 183 NLGYRLWDPETKQVVRSRDVKFREDTMYYPKKGEDRPEGVVDGSIQSQPIKVTTHDSNDS 362
GYRLWD E K+++RSRDV F E MY +DR S +S+P+ D +S
Sbjct: 96 EFGYRLWDDENKKMIRSRDVIFNERVMY-----KDRHSTDASNSEKSRPVYAEVDDVPES 150
>KYP55451.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 171
Score = 103 bits (258), Expect = 1e-25
Identities = 48/106 (45%), Positives = 69/106 (65%), Gaps = 9/106 (8%)
Frame = +3
Query: 30 KIPELEWSGSKISYSHLRVFGCEAYVHVPKENRSKIESRARKCIFLGYGGDNLGYRLWDP 209
KIPE EW + SHL+VFGC +YV V ++ K + +ARKCIF+GYG +++GYRLWD
Sbjct: 4 KIPEEEWQSKDVRLSHLKVFGCVSYVRVGDVDKDKFDPKARKCIFIGYGANDMGYRLWDD 63
Query: 210 ETKQVVRSRDVKFREDTMY---------YPKKGEDRPEGVVDGSIQ 320
E ++++RSRDV F ED +Y KK ++ E V+D +I+
Sbjct: 64 EKRKIIRSRDVTFNEDVVYKDKLETNAEVEKKLTNKQEVVLDDNIE 109
>KYP59969.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 345
Score = 107 bits (268), Expect = 2e-25
Identities = 43/84 (51%), Positives = 64/84 (76%)
Frame = +3
Query: 6 SPHAAIDGKIPELEWSGSKISYSHLRVFGCEAYVHVPKENRSKIESRARKCIFLGYGGDN 185
+P ++ ++P+ W G SY HLRVFGC+A+VH+P++ RSK++++ R+CIF+GYG D
Sbjct: 197 TPTVILNSEVPDKIWFGKNESYDHLRVFGCKAFVHIPRDERSKLDAKTRQCIFIGYGEDE 256
Query: 186 LGYRLWDPETKQVVRSRDVKFRED 257
GYR +DP K++VRSRDV+F ED
Sbjct: 257 FGYRFYDPVEKKLVRSRDVQFMED 280