BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra29_contig00024757
         (853 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_001325528.1 Pseudouridine synthase family protein [Arabidopsi...   100   6e-21
OAP03928.1 hypothetical protein AXX17_AT3G20640 [Arabidopsis tha...   100   2e-20
NP_188575.1 Pseudouridine synthase family protein [Arabidopsis t...   100   2e-20
XP_009805029.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...    97   2e-19
XP_002883182.1 pseudouridine synthase family protein [Arabidopsi...    97   5e-19
XP_009805028.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...    96   7e-19
XP_017230138.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...    95   2e-18
XP_018827853.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...    94   3e-18
JAU91414.1 RNA pseudouridine synthase 4, mitochondrial [Noccaea ...    93   8e-18
JAU23396.1 RNA pseudouridine synthase 4, mitochondrial [Noccaea ...    93   8e-18
JAU71509.1 RNA pseudouridine synthase 4, mitochondrial, partial ...    93   8e-18
XP_010487888.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...    92   2e-17
XP_010507743.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...    92   2e-17
JAU30492.1 RNA pseudouridine synthase 4, mitochondrial [Noccaea ...    92   2e-17
XP_010466089.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...    92   2e-17
XP_010271260.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...    90   7e-17
XP_018486924.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...    90   9e-17
XP_010271255.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...    90   1e-16
XP_010271251.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...    90   1e-16
XP_013724526.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...    89   3e-16

>NP_001325528.1 Pseudouridine synthase family protein [Arabidopsis thaliana]
           ANM63442.1 Pseudouridine synthase family protein
           [Arabidopsis thaliana]
          Length = 341

 Score =  100 bits (249), Expect = 6e-21
 Identities = 67/207 (32%), Positives = 101/207 (48%), Gaps = 1/207 (0%)
 Frame = +2

Query: 236 SIKNINNNTIFTAWFCNSRTKERDTTEDEDFPF-FIKLPPYEEKADMPTLGKNLMEDDFP 412
           +I    N T   +   +  T+   TT+ +D    ++ LPP+    D   +GK+L+ D   
Sbjct: 21  TISTFKNPTKALSAAAHQSTRSYSTTQTDDSRGKWLTLPPFSPTIDGTAVGKDLLSDGDS 80

Query: 413 MERSKRKHKPPKVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXX 592
           ++ S    K    TALRW+ +C P++P  L+QK+FRLRQV+                   
Sbjct: 81  VKSSTDNSK---TTALRWILRCRPDLPRTLVQKLFRLRQVR----REMSMSVDGDELQRS 133

Query: 593 XXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQL 772
                   E +  G ++YL             ++K +S +      K++ SLV+YKDP +
Sbjct: 134 QLKRVAAKESLNVGDRIYLPLSVDNDTPQTPPAKK-ESFQCSDEERKFVCSLVLYKDPAI 192

Query: 773 IVLNKPSGLPVQGGPGIQKSIDSLAVA 853
           IVLNKP GL VQGG GI+ SID LA +
Sbjct: 193 IVLNKPHGLAVQGGSGIKTSIDELAAS 219


>OAP03928.1 hypothetical protein AXX17_AT3G20640 [Arabidopsis thaliana]
          Length = 477

 Score =  100 bits (249), Expect = 2e-20
 Identities = 67/207 (32%), Positives = 101/207 (48%), Gaps = 1/207 (0%)
 Frame = +2

Query: 236 SIKNINNNTIFTAWFCNSRTKERDTTEDEDFPF-FIKLPPYEEKADMPTLGKNLMEDDFP 412
           +I    N T   +   +  T+   TT+ +D    ++ LPP+    D   +GK+L+ D   
Sbjct: 21  TISTFKNPTKALSAAAHQSTRSYSTTQTDDSRGKWLTLPPFSPTIDGTAVGKDLLSDGDS 80

Query: 413 MERSKRKHKPPKVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXX 592
           ++ S    K    TALRW+ +C P++P  L+QK+FRLRQV+                   
Sbjct: 81  VKSSTDNSK---TTALRWILRCRPDLPRTLVQKLFRLRQVR----REMSMSVDGDELQRS 133

Query: 593 XXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQL 772
                   E +  G ++YL             ++K +S +      K++ SLV+YKDP +
Sbjct: 134 QLKRVAAKESLNVGDRIYLPLSVDNDTPQTPPAKK-ESFQCSDEERKFVCSLVLYKDPAI 192

Query: 773 IVLNKPSGLPVQGGPGIQKSIDSLAVA 853
           IVLNKP GL VQGG GI+ SID LA +
Sbjct: 193 IVLNKPHGLAVQGGSGIKTSIDELAAS 219


>NP_188575.1 Pseudouridine synthase family protein [Arabidopsis thaliana]
           Q9LT72.1 RecName: Full=RNA pseudouridine synthase 4,
           mitochondrial; AltName: Full=RNA pseudouridylate
           synthase 4; AltName: Full=RNA-uridine isomerase 4;
           Flags: Precursor BAB02469.1 unnamed protein product
           [Arabidopsis thaliana] BAF00800.1 hypothetical protein
           [Arabidopsis thaliana] ABO45695.1 At3g19440 [Arabidopsis
           thaliana] AEE76240.1 Pseudouridine synthase family
           protein [Arabidopsis thaliana]
          Length = 477

 Score =  100 bits (249), Expect = 2e-20
 Identities = 67/207 (32%), Positives = 101/207 (48%), Gaps = 1/207 (0%)
 Frame = +2

Query: 236 SIKNINNNTIFTAWFCNSRTKERDTTEDEDFPF-FIKLPPYEEKADMPTLGKNLMEDDFP 412
           +I    N T   +   +  T+   TT+ +D    ++ LPP+    D   +GK+L+ D   
Sbjct: 21  TISTFKNPTKALSAAAHQSTRSYSTTQTDDSRGKWLTLPPFSPTIDGTAVGKDLLSDGDS 80

Query: 413 MERSKRKHKPPKVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXX 592
           ++ S    K    TALRW+ +C P++P  L+QK+FRLRQV+                   
Sbjct: 81  VKSSTDNSK---TTALRWILRCRPDLPRTLVQKLFRLRQVR----REMSMSVDGDELQRS 133

Query: 593 XXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQL 772
                   E +  G ++YL             ++K +S +      K++ SLV+YKDP +
Sbjct: 134 QLKRVAAKESLNVGDRIYLPLSVDNDTPQTPPAKK-ESFQCSDEERKFVCSLVLYKDPAI 192

Query: 773 IVLNKPSGLPVQGGPGIQKSIDSLAVA 853
           IVLNKP GL VQGG GI+ SID LA +
Sbjct: 193 IVLNKPHGLAVQGGSGIKTSIDELAAS 219


>XP_009805029.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X3
           [Nicotiana sylvestris] XP_016460521.1 PREDICTED: RNA
           pseudouridine synthase 4, mitochondrial-like isoform X2
           [Nicotiana tabacum]
          Length = 381

 Score = 97.1 bits (240), Expect = 2e-19
 Identities = 61/168 (36%), Positives = 86/168 (51%)
 Frame = +2

Query: 344 LPPYEEKADMPTLGKNLMEDDFPMERSKRKHKPPKVTALRWVAKCCPEVPFALLQKMFRL 523
           LPP+    +   LGK L      M++S        +TAL+WV +CCPE+P +L+QK+FRL
Sbjct: 93  LPPFTATVNGAALGKELA--GVKMDKSTNT-----MTALKWVQRCCPELPQSLVQKLFRL 145

Query: 524 RQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSEKAQ 703
           RQV+                           E M  G +++L             S+K +
Sbjct: 146 RQVR----------RESSDVEEQRPKRVAAKESMNIGDRIFLPITVQKFP-----SDKVE 190

Query: 704 SLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLA 847
                   MK++ SL +YKDP++IVLNKP GLPVQGG GI++S+D LA
Sbjct: 191 DYPSSEEEMKFLHSLELYKDPEIIVLNKPPGLPVQGGIGIKRSLDELA 238


>XP_002883182.1 pseudouridine synthase family protein [Arabidopsis lyrata subsp.
           lyrata] EFH59441.1 pseudouridine synthase family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 477

 Score = 96.7 bits (239), Expect = 5e-19
 Identities = 60/171 (35%), Positives = 87/171 (50%)
 Frame = +2

Query: 335 FIKLPPYEEKADMPTLGKNLMEDDFPMERSKRKHKPPKVTALRWVAKCCPEVPFALLQKM 514
           ++ LPP+    D   +GK+L+ D   ++ S    K    TALRW+ +C P++P  L+QK+
Sbjct: 55  WLTLPPFSPTIDGTAVGKDLLSDGDSVKASTDNSK---TTALRWILRCRPDLPRTLVQKL 111

Query: 515 FRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSE 694
           FRLRQV+                           E +  G ++YL             ++
Sbjct: 112 FRLRQVR----RQMSLSVDGHELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPPTPPAK 167

Query: 695 KAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLA 847
           K +S +      K++ SLV+YKDP +IVLNKP GL VQGG GI+ SID LA
Sbjct: 168 K-ESFQCSEEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELA 217


>XP_009805028.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X2
           [Nicotiana sylvestris]
          Length = 481

 Score = 96.3 bits (238), Expect = 7e-19
 Identities = 61/168 (36%), Positives = 85/168 (50%)
 Frame = +2

Query: 344 LPPYEEKADMPTLGKNLMEDDFPMERSKRKHKPPKVTALRWVAKCCPEVPFALLQKMFRL 523
           LPP+    +   LGK L      M++S        +TAL+WV +CCPE+P +L+QK+FRL
Sbjct: 93  LPPFTATVNGAALGKELA--GVKMDKSTNT-----MTALKWVQRCCPELPQSLVQKLFRL 145

Query: 524 RQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSEKAQ 703
           RQV                            E M  G +++L             S+K +
Sbjct: 146 RQVAAK-------------------------ESMNIGDRIFLPITVQKFP-----SDKVE 175

Query: 704 SLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLA 847
                   MK++ SL +YKDP++IVLNKP GLPVQGG GI++S+D LA
Sbjct: 176 DYPSSEEEMKFLHSLELYKDPEIIVLNKPPGLPVQGGIGIKRSLDELA 223


>XP_017230138.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Daucus
           carota subsp. sativus] KZN08989.1 hypothetical protein
           DCAR_001645 [Daucus carota subsp. sativus]
          Length = 453

 Score = 95.1 bits (235), Expect = 2e-18
 Identities = 58/175 (33%), Positives = 90/175 (51%), Gaps = 2/175 (1%)
 Frame = +2

Query: 335 FIKLPPYEEKADMPTLGKNLMEDDFPMERSKRKHKPPKVTALRWVAKCCPEVPFALLQKM 514
           ++ LPPY    D   LGK +   +    + +        TAL+W+ KCCP++P +L+QK+
Sbjct: 35  WLTLPPYTHTIDASALGKQIYSRNSAETQGE-------TTALKWIIKCCPQLPRSLVQKL 87

Query: 515 FRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSE 694
           FRLRQV+                           + M+ G K++L             +E
Sbjct: 88  FRLRQVR-RESIDFSSSDVGGLAQERRVKRVGAKDAMQYGDKIFL--PKTVEELSSAKTE 144

Query: 695 KAQSL--RLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVA 853
           KA+ +  R +    K+++SL +YKD  +IV+NKP G+PVQGG GI++S+D LA A
Sbjct: 145 KAEKVEGRYNEEEQKFVQSLELYKDSAIIVVNKPHGMPVQGGVGIKRSLDELAGA 199


>XP_018827853.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
           [Juglans regia]
          Length = 476

 Score = 94.4 bits (233), Expect = 3e-18
 Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 3/184 (1%)
 Frame = +2

Query: 305 DTTEDEDFPFFIKLPPYEEKADMPTLGKNLMEDDFPMER---SKRKHKPPKVTALRWVAK 475
           DT E  +   +  LPP+    +    GK +  +  P++    +         TAL+WV +
Sbjct: 44  DTKEGNNSDKWFTLPPFTPTVNGAAFGKEISRNRAPLKSGVTTSATSTSTTTTALKWVLR 103

Query: 476 CCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXX 655
           CCP++P +L+QK+FRLRQV+                           + M  G +++L  
Sbjct: 104 CCPDLPRSLVQKLFRLRQVRRESNDVGSTCVDAQVQQERRLKRVSAKDSMNVGDRIFLPI 163

Query: 656 XXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSI 835
                        + Q    +     ++ SLV+YKDP ++V+NKP G+PVQGG GI++S+
Sbjct: 164 TVQEFPF------EKQDCHCNEEEANFVRSLVLYKDPAIVVVNKPPGMPVQGGIGIKQSL 217

Query: 836 DSLA 847
           D LA
Sbjct: 218 DGLA 221


>JAU91414.1 RNA pseudouridine synthase 4, mitochondrial [Noccaea caerulescens]
          Length = 474

 Score = 93.2 bits (230), Expect = 8e-18
 Identities = 59/171 (34%), Positives = 85/171 (49%)
 Frame = +2

Query: 335 FIKLPPYEEKADMPTLGKNLMEDDFPMERSKRKHKPPKVTALRWVAKCCPEVPFALLQKM 514
           ++ LPP+    D   +GK L  D   ++ S         TALRW+ +C P++P +L+QK+
Sbjct: 53  WLTLPPFYPTVDAAAVGKELSSDGDSVKGSTDGSS----TALRWILRCRPDLPRSLVQKL 108

Query: 515 FRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSE 694
           FRLRQV+                           E +  G ++YL             ++
Sbjct: 109 FRLRQVR----REMSMNCDGDELQRSQLKRVAAKEALNVGDRIYLPMSVDNDAPQRPPAK 164

Query: 695 KAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLA 847
           K +S R      K+I SLV+YKDP +IV+NKP G+ VQGG GI+ SID LA
Sbjct: 165 K-ESFRCSEEERKFICSLVLYKDPAIIVMNKPHGMAVQGGTGIKTSIDELA 214


>JAU23396.1 RNA pseudouridine synthase 4, mitochondrial [Noccaea caerulescens]
          Length = 474

 Score = 93.2 bits (230), Expect = 8e-18
 Identities = 59/171 (34%), Positives = 85/171 (49%)
 Frame = +2

Query: 335 FIKLPPYEEKADMPTLGKNLMEDDFPMERSKRKHKPPKVTALRWVAKCCPEVPFALLQKM 514
           ++ LPP+    D   +GK L  D   ++ S         TALRW+ +C P++P +L+QK+
Sbjct: 53  WLTLPPFYPTVDAAAVGKELSSDGDSVKGSTDGSS----TALRWILRCRPDLPRSLVQKL 108

Query: 515 FRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSE 694
           FRLRQV+                           E +  G ++YL             ++
Sbjct: 109 FRLRQVR----REMSMNCDGDELQRSQLKRVAAKEALNVGDRIYLPMSVDNDAPQRPPAK 164

Query: 695 KAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLA 847
           K +S R      K+I SLV+YKDP +IV+NKP G+ VQGG GI+ SID LA
Sbjct: 165 K-ESFRCSEEERKFICSLVLYKDPAIIVMNKPHGMAVQGGTGIKTSIDELA 214


>JAU71509.1 RNA pseudouridine synthase 4, mitochondrial, partial [Noccaea
           caerulescens]
          Length = 476

 Score = 93.2 bits (230), Expect = 8e-18
 Identities = 59/171 (34%), Positives = 85/171 (49%)
 Frame = +2

Query: 335 FIKLPPYEEKADMPTLGKNLMEDDFPMERSKRKHKPPKVTALRWVAKCCPEVPFALLQKM 514
           ++ LPP+    D   +GK L  D   ++ S         TALRW+ +C P++P +L+QK+
Sbjct: 55  WLTLPPFYPTVDAAAVGKELSSDGDSVKGSTDGSS----TALRWILRCRPDLPRSLVQKL 110

Query: 515 FRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSE 694
           FRLRQV+                           E +  G ++YL             ++
Sbjct: 111 FRLRQVR----REMFMNCDGDELQRSQLKRVAAKEALNVGDRIYLPMSVDKDAPQRPPAK 166

Query: 695 KAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLA 847
           K +S R      K+I SLV+YKDP +IV+NKP G+ VQGG GI+ SID LA
Sbjct: 167 K-ESFRCSEEERKFICSLVLYKDPAIIVMNKPHGMAVQGGTGIKTSIDELA 216


>XP_010487888.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like
           [Camelina sativa]
          Length = 481

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 56/177 (31%), Positives = 84/177 (47%)
 Frame = +2

Query: 317 DEDFPFFIKLPPYEEKADMPTLGKNLMEDDFPMERSKRKHKPPKVTALRWVAKCCPEVPF 496
           D+    ++ LP +    D   +GK L  D    +  K        TALRW+ +C P++P 
Sbjct: 52  DDSSGKWVTLPSFYPTVDGTAVGKELTSDG---DSIKGSTDGSNTTALRWILRCRPDLPR 108

Query: 497 ALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXX 676
            L+QK+FRLRQV+                           E +  G +++L         
Sbjct: 109 TLVQKLFRLRQVR----REMTLSCDGDALQRSKLKRVAAKESLNVGDRIFLPLSVDNGAP 164

Query: 677 XXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLA 847
              ++ K ++ R      K++ SLV++KDP +IVLNKP G+ VQGG GI+ SID LA
Sbjct: 165 SQPLAAKKENFRCSAEERKFVCSLVLFKDPSIIVLNKPHGMAVQGGTGIKTSIDELA 221


>XP_010507743.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Camelina
           sativa]
          Length = 482

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 57/177 (32%), Positives = 84/177 (47%)
 Frame = +2

Query: 317 DEDFPFFIKLPPYEEKADMPTLGKNLMEDDFPMERSKRKHKPPKVTALRWVAKCCPEVPF 496
           D+    ++ LP +    +   +GK L  D    +  K        TALRW+ +C P++P 
Sbjct: 52  DDSSGKWVTLPSFYPTVNGTAVGKELTSDG---DSIKGSTDGSNTTALRWILRCRPDLPR 108

Query: 497 ALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXX 676
            L+QK+FRLRQV+                           E +  G +++L         
Sbjct: 109 TLVQKLFRLRQVR----REMSVSCDGDELQRSKLKRVAAKESLNVGDRIFLPLSVDNGAP 164

Query: 677 XXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLA 847
               ++K +S R      K++ SLV+YKDP +IVLNKP G+ VQGG GI+ SID LA
Sbjct: 165 PQQPADKKESFRCSEEERKFVCSLVLYKDPSIIVLNKPHGMAVQGGTGIKTSIDELA 221


>JAU30492.1 RNA pseudouridine synthase 4, mitochondrial [Noccaea caerulescens]
          Length = 474

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 58/171 (33%), Positives = 85/171 (49%)
 Frame = +2

Query: 335 FIKLPPYEEKADMPTLGKNLMEDDFPMERSKRKHKPPKVTALRWVAKCCPEVPFALLQKM 514
           ++ LPP+    D   +GK L  D   ++ S         TALRW+ +C P++P +L+QK+
Sbjct: 53  WLTLPPFYPTVDAAAVGKELSSDGDSVKGSTDGSS----TALRWILRCRPDLPRSLVQKL 108

Query: 515 FRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSE 694
           FRLRQV+                           E +  G ++YL             ++
Sbjct: 109 FRLRQVR----REMSMNCDGDELQRSQLKRVAAKEALNVGDRIYLPMSVDNDAPQRPPAK 164

Query: 695 KAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLA 847
           K ++ R      K+I SLV+YKDP +IV+NKP G+ VQGG GI+ SID LA
Sbjct: 165 K-ETFRCSEEERKFICSLVLYKDPAIIVMNKPHGMAVQGGTGIKTSIDELA 214


>XP_010466089.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like
           [Camelina sativa]
          Length = 482

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 5/227 (2%)
 Frame = +2

Query: 182 RTATRSLH-----VITTNRGYPYSIKNINNNTIFTAWFCNSRTKERDTTEDEDFPFFIKL 346
           R AT +LH        T   +    K++++  +  A  C   +  +    D+    ++ L
Sbjct: 5   RIATATLHRHLQSQSPTISSFKDPTKSLSSAAVAAAHQCRGYSTAQT---DDSSGKWVTL 61

Query: 347 PPYEEKADMPTLGKNLMEDDFPMERSKRKHKPPKVTALRWVAKCCPEVPFALLQKMFRLR 526
           P +    D   +GK L  D    +  K        TALRW+ +C P++P  L+QK+FRLR
Sbjct: 62  PSFYPTVDGNAVGKELTSDG---DSIKGSTDGSNTTALRWILRCRPDLPRTLVQKLFRLR 118

Query: 527 QVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSEKAQS 706
           QV+                           E +  G +++L             + K + 
Sbjct: 119 QVR----REMTLSCDNDLLQRSKLKRVAAKESLNVGDRIFLPLSVDNVAPPQPTATKKEH 174

Query: 707 LRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLA 847
            R      K++ SLV+YKDP +IVLNKP G+ VQGG GI+ SID LA
Sbjct: 175 FRCSEEERKFVCSLVLYKDPSIIVLNKPHGMAVQGGTGIKTSIDELA 221


>XP_010271260.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
           X3 [Nelumbo nucifera]
          Length = 369

 Score = 89.7 bits (221), Expect = 7e-17
 Identities = 58/193 (30%), Positives = 91/193 (47%)
 Frame = +2

Query: 269 TAWFCNSRTKERDTTEDEDFPFFIKLPPYEEKADMPTLGKNLMEDDFPMERSKRKHKPPK 448
           TA   +   K++ T +      ++ LPP     D  ++ K L      + + +  +    
Sbjct: 37  TAAAASKEEKQKKTEKGR----WLILPPVSSSIDAVSVVKALSSRPSDL-KGETTNTTTS 91

Query: 449 VTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMR 628
            TAL+WV +CCP +P +L+QK+FRLRQV+                           E+M 
Sbjct: 92  TTALKWVLRCCPHLPRSLVQKLFRLRQVRRESCDSMSSLDIGNHAQEHRLKRVTAKEVMN 151

Query: 629 PGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQ 808
            G +++L            +  + Q    +   + YI SL +YKDP +I +NKP G+PVQ
Sbjct: 152 LGDRIFLPITVQE------LPSETQEHYCNEDEISYICSLELYKDPAIIAVNKPHGMPVQ 205

Query: 809 GGPGIQKSIDSLA 847
           GG GI+KS+D LA
Sbjct: 206 GGIGIKKSLDELA 218


>XP_018486924.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Raphanus
           sativus]
          Length = 472

 Score = 90.1 bits (222), Expect = 9e-17
 Identities = 58/181 (32%), Positives = 84/181 (46%)
 Frame = +2

Query: 305 DTTEDEDFPFFIKLPPYEEKADMPTLGKNLMEDDFPMERSKRKHKPPKVTALRWVAKCCP 484
           D  +D+    ++ LPP+    D   +GK L  D   + +          TALRW+ +C P
Sbjct: 48  DDDDDDRRGKWLTLPPFSPTIDAAAVGKELSFDGDSVAKGS-------TTALRWILRCRP 100

Query: 485 EVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXX 664
           ++P  L+QK+FRLRQV+                           E +  G ++YL     
Sbjct: 101 DLPRNLVQKLFRLRQVR----REVPLSCDGDELQRSQLKRVAAKESLNVGDRIYLPLSVG 156

Query: 665 XXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSL 844
                    E+    R      K++ SLV+YKDP +IVLNKP G+ VQGG G++ SID L
Sbjct: 157 NDAPPPAKKER---FRCSEEERKFVCSLVLYKDPAIIVLNKPHGMAVQGGTGVKTSIDEL 213

Query: 845 A 847
           A
Sbjct: 214 A 214


>XP_010271255.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
           X2 [Nelumbo nucifera]
          Length = 440

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 58/193 (30%), Positives = 91/193 (47%)
 Frame = +2

Query: 269 TAWFCNSRTKERDTTEDEDFPFFIKLPPYEEKADMPTLGKNLMEDDFPMERSKRKHKPPK 448
           TA   +   K++ T +      ++ LPP     D  ++ K L      + + +  +    
Sbjct: 37  TAAAASKEEKQKKTEKGR----WLILPPVSSSIDAVSVVKALSSRPSDL-KGETTNTTTS 91

Query: 449 VTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMR 628
            TAL+WV +CCP +P +L+QK+FRLRQV+                           E+M 
Sbjct: 92  TTALKWVLRCCPHLPRSLVQKLFRLRQVRRESCDSMSSLDIGNHAQEHRLKRVTAKEVMN 151

Query: 629 PGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQ 808
            G +++L            +  + Q    +   + YI SL +YKDP +I +NKP G+PVQ
Sbjct: 152 LGDRIFLPITVQE------LPSETQEHYCNEDEISYICSLELYKDPAIIAVNKPHGMPVQ 205

Query: 809 GGPGIQKSIDSLA 847
           GG GI+KS+D LA
Sbjct: 206 GGIGIKKSLDELA 218


>XP_010271251.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
           X1 [Nelumbo nucifera]
          Length = 472

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 58/193 (30%), Positives = 91/193 (47%)
 Frame = +2

Query: 269 TAWFCNSRTKERDTTEDEDFPFFIKLPPYEEKADMPTLGKNLMEDDFPMERSKRKHKPPK 448
           TA   +   K++ T +      ++ LPP     D  ++ K L      + + +  +    
Sbjct: 37  TAAAASKEEKQKKTEKGR----WLILPPVSSSIDAVSVVKALSSRPSDL-KGETTNTTTS 91

Query: 449 VTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMR 628
            TAL+WV +CCP +P +L+QK+FRLRQV+                           E+M 
Sbjct: 92  TTALKWVLRCCPHLPRSLVQKLFRLRQVRRESCDSMSSLDIGNHAQEHRLKRVTAKEVMN 151

Query: 629 PGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQ 808
            G +++L            +  + Q    +   + YI SL +YKDP +I +NKP G+PVQ
Sbjct: 152 LGDRIFLPITVQE------LPSETQEHYCNEDEISYICSLELYKDPAIIAVNKPHGMPVQ 205

Query: 809 GGPGIQKSIDSLA 847
           GG GI+KS+D LA
Sbjct: 206 GGIGIKKSLDELA 218


>XP_013724526.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like
           [Brassica napus]
          Length = 474

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 59/180 (32%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
 Frame = +2

Query: 314 EDEDFPF--FIKLPPYEEKADMPTLGKNLMEDDFPMERSKRKHKPPKVTALRWVAKCCPE 487
           +D+D P   ++ LPP+    D   +GK L   D   +   +       TALRW+ +C P+
Sbjct: 45  DDDDDPRGKWLTLPPFSPTIDAAAVGKELSFGDG--DSIVKGSTDGSTTALRWILRCRPD 102

Query: 488 VPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXX 667
           +P  L+QK+FRLRQV+                           E +  G ++YL      
Sbjct: 103 LPRNLVQKLFRLRQVR-----RQVVVPMSCELQRSQLKRVAAKESLNVGDRIYLPLSVGN 157

Query: 668 XXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLA 847
                   E+    R      K++ SLV+YKDP +IVLNKP G+ VQGG G++ SID LA
Sbjct: 158 DAPPPAKKER---FRCSEEERKFVCSLVLYKDPAIIVLNKPHGMAVQGGTGVKTSIDELA 214