BLASTX nr result
ID: Ephedra29_contig00024109
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra29_contig00024109
(383 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJA90770.1 RNA-dependent RNA polymerase 2 [Ephedra trifurca] 135 1e-34
AJA90786.1 RNA-dependent RNA polymerase 2 [Pinus canariensis] 72 5e-12
AJP06346.1 RDR2 [Pinus tabuliformis] 72 5e-12
AJA90778.1 RNA-dependent RNA polymerase 2 [Ginkgo biloba] 71 7e-12
AJA90762.1 RNA-dependent RNA polymerase 2 [Cycas revoluta] 68 1e-10
XP_012831187.1 PREDICTED: RNA-dependent RNA polymerase 2 [Erythr... 68 1e-10
XP_011071821.1 PREDICTED: RNA-dependent RNA polymerase 2 [Sesamu... 65 7e-10
XP_019703492.1 PREDICTED: probable RNA-dependent RNA polymerase ... 63 4e-09
KZV56554.1 RNA-dependent RNA polymerase 2-like [Dorcoceras hygro... 63 4e-09
XP_010271987.1 PREDICTED: RNA-dependent RNA polymerase 2 [Nelumb... 63 6e-09
XP_006345040.1 PREDICTED: RNA-dependent RNA polymerase 2 [Solanu... 62 8e-09
XP_015070676.1 PREDICTED: RNA-dependent RNA polymerase 2 [Solanu... 62 8e-09
XP_004236120.1 PREDICTED: RNA-dependent RNA polymerase 2 [Solanu... 62 1e-08
XP_016496493.1 PREDICTED: RNA-dependent RNA polymerase 2-like, p... 62 1e-08
AAU21243.1 putative RNA-dependent RNA polymerase RdRP2 [Nicotian... 62 2e-08
XP_009623301.1 PREDICTED: RNA-dependent RNA polymerase 2 [Nicoti... 62 2e-08
XP_016563470.1 PREDICTED: RNA-dependent RNA polymerase 2 [Capsic... 60 4e-08
AHL27587.1 RNA-dependent RNA polymerase 4 [Salvia miltiorrhiza] 60 5e-08
XP_019243714.1 PREDICTED: RNA-dependent RNA polymerase 2 [Nicoti... 60 5e-08
XP_008780950.1 PREDICTED: probable RNA-dependent RNA polymerase ... 59 1e-07
>AJA90770.1 RNA-dependent RNA polymerase 2 [Ephedra trifurca]
Length = 1111
Score = 135 bits (341), Expect = 1e-34
Identities = 67/69 (97%), Positives = 67/69 (97%)
Frame = -1
Query: 209 MSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLA 30
MSSTVVIQNLPR VVAHELVEFLDSILGEGSVFS QIKTERTNWKSGGSCIVQFDNPGLA
Sbjct: 1 MSSTVVIQNLPRAVVAHELVEFLDSILGEGSVFSYQIKTERTNWKSGGSCIVQFDNPGLA 60
Query: 29 TKICNRSTK 3
TKICNRSTK
Sbjct: 61 TKICNRSTK 69
>AJA90786.1 RNA-dependent RNA polymerase 2 [Pinus canariensis]
Length = 1114
Score = 71.6 bits (174), Expect = 5e-12
Identities = 32/64 (50%), Positives = 45/64 (70%)
Frame = -1
Query: 200 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 21
TV + ++P V+A ELVEF++ I+G SV++C+I+TER NWKS G VQFDN A ++
Sbjct: 5 TVKVSSIPLAVIAKELVEFMEGIVGRDSVYACEIRTERANWKSRGFGRVQFDNADAAKEV 64
Query: 20 CNRS 9
C S
Sbjct: 65 CRLS 68
>AJP06346.1 RDR2 [Pinus tabuliformis]
Length = 1123
Score = 71.6 bits (174), Expect = 5e-12
Identities = 32/64 (50%), Positives = 45/64 (70%)
Frame = -1
Query: 200 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 21
TV + ++P V+A ELVEF++ I+G SV++C+I+TER NWKS G VQFDN A ++
Sbjct: 5 TVKVSSIPLAVIAKELVEFMEGIVGRDSVYACEIRTERANWKSRGFGWVQFDNADAAKEV 64
Query: 20 CNRS 9
C S
Sbjct: 65 CRLS 68
>AJA90778.1 RNA-dependent RNA polymerase 2 [Ginkgo biloba]
Length = 1114
Score = 71.2 bits (173), Expect = 7e-12
Identities = 32/66 (48%), Positives = 48/66 (72%)
Frame = -1
Query: 206 SSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLAT 27
S TV + ++P V+A EL EF ++I+G+ SV++C+IKT+R+NWKS G VQF+N AT
Sbjct: 3 SCTVHVSSIPLIVIAKELKEFFENIVGKDSVYACEIKTQRSNWKSKGFGRVQFENTNAAT 62
Query: 26 KICNRS 9
++C S
Sbjct: 63 EVCKLS 68
>AJA90762.1 RNA-dependent RNA polymerase 2 [Cycas revoluta]
Length = 1117
Score = 67.8 bits (164), Expect = 1e-10
Identities = 32/64 (50%), Positives = 43/64 (67%)
Frame = -1
Query: 200 TVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATKI 21
TV + N+P T VA ELV F++ I+G+ V++C+IKTER NWKS G VQF+N A +
Sbjct: 5 TVRVSNIPLTAVAKELVSFVERIIGKDCVYACEIKTERMNWKSRGFGRVQFENGDAAVEA 64
Query: 20 CNRS 9
C S
Sbjct: 65 CKLS 68
>XP_012831187.1 PREDICTED: RNA-dependent RNA polymerase 2 [Erythranthe guttata]
EYU42543.1 hypothetical protein MIMGU_mgv1a000463mg
[Erythranthe guttata]
Length = 1135
Score = 67.8 bits (164), Expect = 1e-10
Identities = 30/56 (53%), Positives = 44/56 (78%)
Frame = -1
Query: 212 RMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFD 45
R + TV +QN+P+T++AHEL FL+S +G+G++F+ +I TERTNWKS G VQF+
Sbjct: 5 RPTLTVKVQNIPQTIIAHELQTFLESAVGKGTIFAVEIFTERTNWKSRGHGRVQFE 60
>XP_011071821.1 PREDICTED: RNA-dependent RNA polymerase 2 [Sesamum indicum]
Length = 1133
Score = 65.5 bits (158), Expect = 7e-10
Identities = 32/68 (47%), Positives = 45/68 (66%)
Frame = -1
Query: 212 RMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGL 33
R + TV + N+P+T +A EL+ FL+S LG+G+VF+ +I TE NWKS G VQFD+P
Sbjct: 10 RPTLTVKVSNIPQTAIAQELLSFLESTLGKGTVFAIEIFTEHKNWKSRGHGRVQFDSPEA 69
Query: 32 ATKICNRS 9
K + S
Sbjct: 70 KIKALSLS 77
>XP_019703492.1 PREDICTED: probable RNA-dependent RNA polymerase 2 [Elaeis
guineensis]
Length = 1117
Score = 63.2 bits (152), Expect = 4e-09
Identities = 32/62 (51%), Positives = 41/62 (66%)
Frame = -1
Query: 203 STVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATK 24
+TV + N+P T VA EL EF D+ +G SVF+C+I T R NWKS G VQFD+ G A +
Sbjct: 6 ATVQVSNIPLTAVAQELFEFFDAAVG--SVFACEIATARRNWKSRGFGRVQFDSLGAAER 63
Query: 23 IC 18
C
Sbjct: 64 AC 65
>KZV56554.1 RNA-dependent RNA polymerase 2-like [Dorcoceras hygrometricum]
Length = 1143
Score = 63.2 bits (152), Expect = 4e-09
Identities = 29/63 (46%), Positives = 40/63 (63%)
Frame = -1
Query: 227 GKR*RRMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQF 48
G +R + TV + N+P++ +A EL FL+S+LG G +F+ I TE NWKS G VQF
Sbjct: 2 GAEEKRPTLTVRVMNIPQSAIARELFAFLESLLGRGEIFAIDISTEHKNWKSRGHGRVQF 61
Query: 47 DNP 39
D P
Sbjct: 62 DTP 64
>XP_010271987.1 PREDICTED: RNA-dependent RNA polymerase 2 [Nelumbo nucifera]
Length = 1115
Score = 62.8 bits (151), Expect = 6e-09
Identities = 29/61 (47%), Positives = 41/61 (67%)
Frame = -1
Query: 203 STVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATK 24
+TV + N+P T +A ELV+F ++ LG+GSVF+C+I TE NWKS G VQF+ A
Sbjct: 6 TTVRVSNIPLTAIAQELVDFFEAKLGKGSVFACEIATEHKNWKSKGLGRVQFETIDAANT 65
Query: 23 I 21
+
Sbjct: 66 V 66
>XP_006345040.1 PREDICTED: RNA-dependent RNA polymerase 2 [Solanum tuberosum]
Length = 1119
Score = 62.4 bits (150), Expect = 8e-09
Identities = 26/57 (45%), Positives = 42/57 (73%)
Frame = -1
Query: 215 RRMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFD 45
+R ++TV + N+P++ +A +L +F DS++G+GSVF+C I +E NWKS G VQF+
Sbjct: 5 KRATATVRVSNIPQSAIAKDLFDFFDSLIGKGSVFACDIFSEHKNWKSRGHGRVQFE 61
>XP_015070676.1 PREDICTED: RNA-dependent RNA polymerase 2 [Solanum pennellii]
Length = 1123
Score = 62.4 bits (150), Expect = 8e-09
Identities = 26/57 (45%), Positives = 41/57 (71%)
Frame = -1
Query: 215 RRMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFD 45
+R ++TV + N+P++ +A +L F DS++G+GSVF+C I +E NWKS G VQF+
Sbjct: 5 KRATATVRVSNIPQSAIAKDLFNFFDSLIGKGSVFACDIHSEHKNWKSRGHGRVQFE 61
>XP_004236120.1 PREDICTED: RNA-dependent RNA polymerase 2 [Solanum lycopersicum]
Length = 1119
Score = 62.0 bits (149), Expect = 1e-08
Identities = 26/57 (45%), Positives = 41/57 (71%)
Frame = -1
Query: 215 RRMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFD 45
+R ++TV + N+P++ +A +L F DS++G+GSVF+C I +E NWKS G VQF+
Sbjct: 5 KRATATVRVSNIPQSAIAKDLSNFFDSLIGKGSVFACDIHSEHKNWKSRGHGRVQFE 61
>XP_016496493.1 PREDICTED: RNA-dependent RNA polymerase 2-like, partial [Nicotiana
tabacum]
Length = 683
Score = 61.6 bits (148), Expect = 1e-08
Identities = 26/57 (45%), Positives = 42/57 (73%)
Frame = -1
Query: 215 RRMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFD 45
+R+++TV + N+P+T +A +L +F +S +G+GSVF+C I +E NWKS G VQF+
Sbjct: 5 KRITATVRVSNIPQTAIAKQLFDFFESSIGKGSVFACDIFSEHKNWKSRGHGRVQFE 61
>AAU21243.1 putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
Length = 1120
Score = 61.6 bits (148), Expect = 2e-08
Identities = 26/57 (45%), Positives = 42/57 (73%)
Frame = -1
Query: 215 RRMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFD 45
+R+++TV + N+P+T +A +L +F +S +G+GSVF+C I +E NWKS G VQF+
Sbjct: 5 KRVTATVRVSNIPQTAIAKQLFDFFESSIGKGSVFACDIFSEHKNWKSRGHGRVQFE 61
>XP_009623301.1 PREDICTED: RNA-dependent RNA polymerase 2 [Nicotiana
tomentosiformis]
Length = 1120
Score = 61.6 bits (148), Expect = 2e-08
Identities = 26/57 (45%), Positives = 42/57 (73%)
Frame = -1
Query: 215 RRMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFD 45
+R+++TV + N+P+T +A +L +F +S +G+GSVF+C I +E NWKS G VQF+
Sbjct: 5 KRITATVRVSNIPQTAIAKQLFDFFESSIGKGSVFACDIFSEHKNWKSRGHGRVQFE 61
>XP_016563470.1 PREDICTED: RNA-dependent RNA polymerase 2 [Capsicum annuum]
Length = 1130
Score = 60.5 bits (145), Expect = 4e-08
Identities = 26/57 (45%), Positives = 41/57 (71%)
Frame = -1
Query: 215 RRMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFD 45
+R+++TV + N+P++ A +L F DS +G+GSVF+C I +E NWKS G+ VQF+
Sbjct: 6 KRVTATVRVSNIPKSATAKDLFNFFDSKIGKGSVFACDIFSEHKNWKSRGNGRVQFE 62
>AHL27587.1 RNA-dependent RNA polymerase 4 [Salvia miltiorrhiza]
Length = 972
Score = 60.1 bits (144), Expect = 5e-08
Identities = 28/58 (48%), Positives = 41/58 (70%)
Frame = -1
Query: 212 RMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNP 39
R + TV + N+P +A +L FL+S+LG+G+VF+ +I TER NWKS G VQF++P
Sbjct: 10 RPTLTVKVTNIPPIAIAKDLQAFLESVLGKGTVFAVEIFTERENWKSRGHGRVQFESP 67
>XP_019243714.1 PREDICTED: RNA-dependent RNA polymerase 2 [Nicotiana attenuata]
OIT04938.1 rna-dependent rna polymerase 2 [Nicotiana
attenuata]
Length = 1120
Score = 60.1 bits (144), Expect = 5e-08
Identities = 25/57 (43%), Positives = 41/57 (71%)
Frame = -1
Query: 215 RRMSSTVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFD 45
+R+++T + N+P+T +A +L +F +S +G+GSVF+C I +E NWKS G VQF+
Sbjct: 5 KRVTATARVSNIPQTAIAKQLFDFFESSIGKGSVFACDIFSEHKNWKSRGHGRVQFE 61
>XP_008780950.1 PREDICTED: probable RNA-dependent RNA polymerase 2 [Phoenix
dactylifera]
Length = 1117
Score = 59.3 bits (142), Expect = 1e-07
Identities = 31/62 (50%), Positives = 39/62 (62%)
Frame = -1
Query: 203 STVVIQNLPRTVVAHELVEFLDSILGEGSVFSCQIKTERTNWKSGGSCIVQFDNPGLATK 24
+TV + N+P T VA EL EF DS +G SVF+C+I T NWKS G VQFD+ A +
Sbjct: 6 ATVQVSNIPLTAVAQELFEFFDSAVG--SVFACEIATAHRNWKSRGFGRVQFDSLTAADR 63
Query: 23 IC 18
C
Sbjct: 64 AC 65