BLASTX nr result
ID: Ephedra29_contig00023641
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra29_contig00023641
(378 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YP_002519950.1 RNA polymerase beta chain (chloroplast) [Ephedra ... 259 1e-78
YP_009231418.1 RNA polymerase beta chain (chloroplast) [Ephedra ... 256 3e-77
YP_001876572.1 RNA polymerase beta subunit [Welwitschia mirabili... 207 1e-59
BAH11233.1 RNA polymerase beta chain (chloroplast) [Welwitschia ... 207 1e-59
ANZ53579.1 RNA polymerase beta subunit (plastid) [Gnetum gnemon] 202 8e-58
ANZ53711.1 RNA polymerase beta subunit (plastid) [Gnetum parvifo... 199 9e-57
ANZ53645.1 RNA polymerase beta subunit (plastid) [Gnetum gnemon] 199 9e-57
YP_009117839.1 RNA polymerase beta subunit (plastid) [Gnetum gne... 199 9e-57
YP_009193288.1 RNA polymerase beta chain (chloroplast) [Gnetum u... 196 8e-56
YP_002519787.1 RNA polymerase beta chain [Gnetum parvifolium] A6... 194 5e-55
YP_008082190.1 RNA polymerase beta subunit (chloroplast) [Gnetum... 194 5e-55
YP_008965022.1 RNA polymerase beta chain (chloroplast) [Agathis ... 161 1e-43
YP_009144123.1 RNA polymerase beta chain (chloroplast) [Wollemia... 161 1e-43
AJF42631.1 RNA polymerase beta chain (chloroplast) [Araucaria co... 161 1e-43
AJF42470.1 RNA polymerase beta chain (chloroplast) [Araucaria ru... 161 1e-43
AJF42387.1 RNA polymerase beta chain (chloroplast) [Araucaria co... 161 1e-43
AJF42226.1 RNA polymerase beta chain (chloroplast) [Araucaria lu... 161 1e-43
YP_009121292.1 RNA polymerase beta chain (plastid) [Araucaria he... 161 1e-43
AER45540.1 rpoB (chloroplast) [Agathis australis] 161 1e-43
AET47520.1 RNA polymerase beta subunit (chloroplast) [Pinus lumh... 160 3e-43
>YP_002519950.1 RNA polymerase beta chain (chloroplast) [Ephedra equisetina]
BAH11318.1 RNA polymerase beta chain (chloroplast)
[Ephedra equisetina]
Length = 1100
Score = 259 bits (663), Expect = 1e-78
Identities = 125/125 (100%), Positives = 125/125 (100%)
Frame = +3
Query: 3 GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT 182
GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT
Sbjct: 400 GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT 459
Query: 183 KKSNEDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRS 362
KKSNEDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRS
Sbjct: 460 KKSNEDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRS 519
Query: 363 ILPLQ 377
ILPLQ
Sbjct: 520 ILPLQ 524
>YP_009231418.1 RNA polymerase beta chain (chloroplast) [Ephedra foeminea]
ALV90134.1 RNA polymerase beta chain (chloroplast)
[Ephedra foeminea]
Length = 1105
Score = 256 bits (654), Expect = 3e-77
Identities = 123/125 (98%), Positives = 125/125 (100%)
Frame = +3
Query: 3 GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT 182
GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT
Sbjct: 400 GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT 459
Query: 183 KKSNEDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRS 362
KKSNE+HMVSYLLPNEDKNYRIALENLLAV+HKLPEKKNTPTQYRQDFLSVAWEQIHFRS
Sbjct: 460 KKSNENHMVSYLLPNEDKNYRIALENLLAVEHKLPEKKNTPTQYRQDFLSVAWEQIHFRS 519
Query: 363 ILPLQ 377
ILPLQ
Sbjct: 520 ILPLQ 524
>YP_001876572.1 RNA polymerase beta subunit [Welwitschia mirabilis] ABY26785.1 RNA
polymerase beta subunit (chloroplast) [Welwitschia
mirabilis] AMA21048.1 RNA polymerase beta subunit
(plastid) [Welwitschia mirabilis]
Length = 1108
Score = 207 bits (526), Expect = 1e-59
Identities = 96/125 (76%), Positives = 112/125 (89%)
Frame = +3
Query: 3 GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT 182
GGLTE+TASFRARDIHPSYYGRFCPINTPEGQNAGLIASLA S VD+ G L+SPFY +
Sbjct: 407 GGLTEQTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLAISAKVDNSGSLESPFYKIA 466
Query: 183 KKSNEDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRS 362
+K+ ++ ++SYLLP+ED++YRIAL N LAVD K+PEKKNTPTQYRQ+FLS+AWEQIHFRS
Sbjct: 467 EKTKKEQLISYLLPSEDESYRIALGNFLAVDQKIPEKKNTPTQYRQEFLSIAWEQIHFRS 526
Query: 363 ILPLQ 377
ILP Q
Sbjct: 527 ILPFQ 531
>BAH11233.1 RNA polymerase beta chain (chloroplast) [Welwitschia mirabilis]
Length = 1108
Score = 207 bits (526), Expect = 1e-59
Identities = 96/125 (76%), Positives = 112/125 (89%)
Frame = +3
Query: 3 GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT 182
GGLTE+TASFRARDIHPSYYGRFCPINTPEGQNAGLIASLA S VD+ G L+SPFY +
Sbjct: 407 GGLTEQTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLAISAKVDNSGSLESPFYKIA 466
Query: 183 KKSNEDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRS 362
+K+ ++ ++SYLLP+ED++YRIAL N LAVD K+PEKKNTPTQYRQ+FLS+AWEQIHFRS
Sbjct: 467 EKTKKEQLISYLLPSEDESYRIALGNFLAVDQKIPEKKNTPTQYRQEFLSIAWEQIHFRS 526
Query: 363 ILPLQ 377
ILP Q
Sbjct: 527 ILPFQ 531
>ANZ53579.1 RNA polymerase beta subunit (plastid) [Gnetum gnemon]
Length = 1110
Score = 202 bits (513), Expect = 8e-58
Identities = 95/125 (76%), Positives = 107/125 (85%)
Frame = +3
Query: 3 GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT 182
GGLTERTA+FRARDIHPSYYGRFCPINTPEGQNAGLIASLA S +++FGFL+SPFY V
Sbjct: 409 GGLTERTANFRARDIHPSYYGRFCPINTPEGQNAGLIASLAISAKINEFGFLESPFYKVA 468
Query: 183 KKSNEDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRS 362
KK +D + YL P+ED YRIAL N L+VD K+PEKKNTPTQY Q+FLS+AWEQIHFRS
Sbjct: 469 KKYQKDKKIVYLSPSEDVYYRIALGNCLSVDQKIPEKKNTPTQYHQEFLSIAWEQIHFRS 528
Query: 363 ILPLQ 377
LPLQ
Sbjct: 529 FLPLQ 533
>ANZ53711.1 RNA polymerase beta subunit (plastid) [Gnetum parvifolium]
ANZ53777.1 RNA polymerase beta subunit (plastid) [Gnetum
parvifolium] ANZ53843.1 RNA polymerase beta subunit
(plastid) [Gnetum parvifolium]
Length = 1110
Score = 199 bits (505), Expect = 9e-57
Identities = 94/125 (75%), Positives = 105/125 (84%)
Frame = +3
Query: 3 GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT 182
GGLTERTA+FRARDIHPSYYGRFCPINTPEGQNAGLIASLA S ++ FGFL+SPFYNV
Sbjct: 409 GGLTERTANFRARDIHPSYYGRFCPINTPEGQNAGLIASLAISARINGFGFLESPFYNVA 468
Query: 183 KKSNEDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRS 362
KK + + YL P+ED YRIAL N L+VD K+PEKKNTPTQY Q+FLS+AWEQIHFR
Sbjct: 469 KKDQKAKKIVYLSPSEDVYYRIALGNCLSVDQKIPEKKNTPTQYHQEFLSIAWEQIHFRC 528
Query: 363 ILPLQ 377
LPLQ
Sbjct: 529 FLPLQ 533
>ANZ53645.1 RNA polymerase beta subunit (plastid) [Gnetum gnemon]
Length = 1110
Score = 199 bits (505), Expect = 9e-57
Identities = 94/125 (75%), Positives = 106/125 (84%)
Frame = +3
Query: 3 GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT 182
GGLTERTA+FRARDIHPSYYGRFCPINTPEGQNAGLIASLA S +++FGFL+SPFY V
Sbjct: 409 GGLTERTANFRARDIHPSYYGRFCPINTPEGQNAGLIASLAISAKINEFGFLESPFYKVA 468
Query: 183 KKSNEDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRS 362
KK + + YL P+ED YRIAL N L+VD K+PEKKNTPTQY Q+FLS+AWEQIHFRS
Sbjct: 469 KKYQKAKKIVYLSPSEDVYYRIALGNCLSVDQKIPEKKNTPTQYHQEFLSIAWEQIHFRS 528
Query: 363 ILPLQ 377
LPLQ
Sbjct: 529 FLPLQ 533
>YP_009117839.1 RNA polymerase beta subunit (plastid) [Gnetum gnemon] AJE71467.1
RNA polymerase beta subunit (plastid) [Gnetum gnemon]
Length = 1110
Score = 199 bits (505), Expect = 9e-57
Identities = 94/125 (75%), Positives = 106/125 (84%)
Frame = +3
Query: 3 GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT 182
GGLTERTA+FRARDIHPSYYGRFCPINTPEGQNAGLIASLA S +++FGFL+SPFY V
Sbjct: 409 GGLTERTANFRARDIHPSYYGRFCPINTPEGQNAGLIASLAISAKINEFGFLESPFYKVA 468
Query: 183 KKSNEDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRS 362
KK + + YL P+ED YRIAL N L+VD K+PEKKNTPTQY Q+FLS+AWEQIHFRS
Sbjct: 469 KKYQKAKKIVYLSPSEDVYYRIALGNCLSVDQKIPEKKNTPTQYHQEFLSIAWEQIHFRS 528
Query: 363 ILPLQ 377
LPLQ
Sbjct: 529 FLPLQ 533
>YP_009193288.1 RNA polymerase beta chain (chloroplast) [Gnetum ula] BAN16890.1 RNA
polymerase beta chain (chloroplast) [Gnetum ula]
BAT70198.1 RNA polymerase beta chain (chloroplast)
[Gnetum ula]
Length = 1110
Score = 196 bits (498), Expect = 8e-56
Identities = 93/125 (74%), Positives = 105/125 (84%)
Frame = +3
Query: 3 GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT 182
GGLTERTA+FRARDIHPSYYGRFCPINTPEGQNAGLIASLA S +++FGFL+SPFYNV
Sbjct: 409 GGLTERTANFRARDIHPSYYGRFCPINTPEGQNAGLIASLAISARINEFGFLESPFYNVA 468
Query: 183 KKSNEDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRS 362
KK + + YL P+ED YRIAL N L+VD K+PEKKNTPTQY Q+FLS+AWEQIHFR
Sbjct: 469 KKYQKAKKIVYLSPSEDVYYRIALGNCLSVDQKIPEKKNTPTQYHQEFLSIAWEQIHFRC 528
Query: 363 ILPLQ 377
L LQ
Sbjct: 529 FLTLQ 533
>YP_002519787.1 RNA polymerase beta chain [Gnetum parvifolium] A6BM50.1 RecName:
Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
BAF64895.1 RNA polymerase beta subunit (chloroplast)
[Gnetum parvifolium] BAH11298.1 RNA polymerase beta
chain (chloroplast) [Gnetum parvifolium]
Length = 1108
Score = 194 bits (492), Expect = 5e-55
Identities = 94/125 (75%), Positives = 105/125 (84%)
Frame = +3
Query: 3 GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT 182
GGLTERTA+FRARDIHPSYYGRFCPINTPEGQNAGLIASLA S ++ FGFL+SPFYNV
Sbjct: 409 GGLTERTANFRARDIHPSYYGRFCPINTPEGQNAGLIASLAISARIN-FGFLESPFYNVA 467
Query: 183 KKSNEDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRS 362
KK + + YL P+ED YRIAL N L+VD K+PEKKNTPTQY Q+FLS+AWEQIHFR
Sbjct: 468 KKYQKAKKIVYLSPSEDVYYRIALGNCLSVDQKIPEKKNTPTQYHQEFLSIAWEQIHFRC 527
Query: 363 ILPLQ 377
LPLQ
Sbjct: 528 FLPLQ 532
>YP_008082190.1 RNA polymerase beta subunit (chloroplast) [Gnetum montanum]
AGL11035.1 RNA polymerase beta subunit (chloroplast)
[Gnetum montanum] ANZ53909.1 RNA polymerase beta subunit
(plastid) [Gnetum hainanense] ANZ53975.1 RNA polymerase
beta subunit (plastid) [Gnetum hainanense] ANZ54041.1
RNA polymerase beta subunit (plastid) [Gnetum montanum]
ANZ54107.1 RNA polymerase beta subunit (plastid) [Gnetum
montanum] ANZ54173.1 RNA polymerase beta subunit
(plastid) [Gnetum pendulum] ANZ54239.1 RNA polymerase
beta subunit (plastid) [Gnetum pendulum]
Length = 1109
Score = 194 bits (492), Expect = 5e-55
Identities = 94/125 (75%), Positives = 105/125 (84%)
Frame = +3
Query: 3 GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT 182
GGLTERTA+FRARDIHPSYYGRFCPINTPEGQNAGLIASLA S ++ FGFL+SPFYNV
Sbjct: 409 GGLTERTANFRARDIHPSYYGRFCPINTPEGQNAGLIASLAISARIN-FGFLESPFYNVA 467
Query: 183 KKSNEDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRS 362
KK + + YL P+ED YRIAL N L+VD K+PEKKNTPTQY Q+FLS+AWEQIHFR
Sbjct: 468 KKYQKAKKIVYLSPSEDVYYRIALGNCLSVDQKIPEKKNTPTQYHQEFLSIAWEQIHFRC 527
Query: 363 ILPLQ 377
LPLQ
Sbjct: 528 FLPLQ 532
>YP_008965022.1 RNA polymerase beta chain (chloroplast) [Agathis dammara]
BAK86800.1 RNA polymerase beta chain (chloroplast)
[Agathis dammara] BAO19706.1 RNA polymerase beta chain
(chloroplast) (chloroplast) [Agathis dammara]
Length = 1092
Score = 161 bits (408), Expect = 1e-43
Identities = 76/125 (60%), Positives = 98/125 (78%)
Frame = +3
Query: 3 GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT 182
GGLT RTA+FR RDIHPS+YGR CPI T EG NAGL+ASL+ + +G L+SPFY ++
Sbjct: 417 GGLTPRTATFRIRDIHPSHYGRICPITTSEGMNAGLVASLSIYATLGQYGSLQSPFYKIS 476
Query: 183 KKSNEDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRS 362
++S E+HMVS LLP ED+ YRIA+ N LA++H + E++ TP QYRQ+FL +AWEQIHFRS
Sbjct: 477 ERSEEEHMVS-LLPGEDEYYRIAMGNYLALNHGIQEEQFTPAQYRQEFLVLAWEQIHFRS 535
Query: 363 ILPLQ 377
+ P Q
Sbjct: 536 LFPSQ 540
>YP_009144123.1 RNA polymerase beta chain (chloroplast) [Wollemia nobilis]
AKE36580.1 RNA polymerase beta chain (chloroplast)
[Wollemia nobilis]
Length = 1093
Score = 161 bits (408), Expect = 1e-43
Identities = 76/125 (60%), Positives = 98/125 (78%)
Frame = +3
Query: 3 GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT 182
GGLT RTA+FR RDIHPS+YGR CPI T EG NAGL+ASL+ + +G L+SPFY ++
Sbjct: 418 GGLTPRTATFRIRDIHPSHYGRICPITTSEGMNAGLVASLSIYATLGQYGSLQSPFYKIS 477
Query: 183 KKSNEDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRS 362
++S E+HMVS LLP ED+ YRIA+ N LA++H + E++ TP QYRQ+FL +AWEQIHFRS
Sbjct: 478 ERSEEEHMVS-LLPGEDEYYRIAMGNYLALNHGIQEEQFTPAQYRQEFLVLAWEQIHFRS 536
Query: 363 ILPLQ 377
+ P Q
Sbjct: 537 LFPSQ 541
>AJF42631.1 RNA polymerase beta chain (chloroplast) [Araucaria columnaris]
Length = 1093
Score = 161 bits (408), Expect = 1e-43
Identities = 76/125 (60%), Positives = 98/125 (78%)
Frame = +3
Query: 3 GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT 182
GGLT RTA+FR RDIHPS+YGR CPI T EG NAGL+ASL+ + +G L+SPFY ++
Sbjct: 418 GGLTPRTATFRIRDIHPSHYGRICPITTSEGMNAGLVASLSIYATLGQYGSLQSPFYKIS 477
Query: 183 KKSNEDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRS 362
++S E+HMVS LLP ED+ YRIA+ N LA++H + E++ TP QYRQ+FL +AWEQIHFRS
Sbjct: 478 ERSEEEHMVS-LLPGEDEYYRIAMGNYLALNHGIQEEQFTPAQYRQEFLVLAWEQIHFRS 536
Query: 363 ILPLQ 377
+ P Q
Sbjct: 537 LFPSQ 541
>AJF42470.1 RNA polymerase beta chain (chloroplast) [Araucaria rulei]
AJF42794.1 RNA polymerase beta chain (chloroplast)
[Araucaria biramulata] AJF42876.1 RNA polymerase beta
chain (chloroplast) [Araucaria subulata]
Length = 1093
Score = 161 bits (408), Expect = 1e-43
Identities = 76/125 (60%), Positives = 98/125 (78%)
Frame = +3
Query: 3 GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT 182
GGLT RTA+FR RDIHPS+YGR CPI T EG NAGL+ASL+ + +G L+SPFY ++
Sbjct: 418 GGLTPRTATFRIRDIHPSHYGRICPITTSEGMNAGLVASLSIYATLGQYGSLQSPFYKIS 477
Query: 183 KKSNEDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRS 362
++S E+HMVS LLP ED+ YRIA+ N LA++H + E++ TP QYRQ+FL +AWEQIHFRS
Sbjct: 478 ERSEEEHMVS-LLPGEDEYYRIAMGNYLALNHGIQEEQFTPAQYRQEFLVLAWEQIHFRS 536
Query: 363 ILPLQ 377
+ P Q
Sbjct: 537 LFPSQ 541
>AJF42387.1 RNA polymerase beta chain (chloroplast) [Araucaria columnaris]
Length = 1093
Score = 161 bits (408), Expect = 1e-43
Identities = 76/125 (60%), Positives = 98/125 (78%)
Frame = +3
Query: 3 GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT 182
GGLT RTA+FR RDIHPS+YGR CPI T EG NAGL+ASL+ + +G L+SPFY ++
Sbjct: 418 GGLTPRTATFRIRDIHPSHYGRICPITTSEGMNAGLVASLSIYATLGQYGSLQSPFYKIS 477
Query: 183 KKSNEDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRS 362
++S E+HMVS LLP ED+ YRIA+ N LA++H + E++ TP QYRQ+FL +AWEQIHFRS
Sbjct: 478 ERSEEEHMVS-LLPGEDEYYRIAMGNYLALNHGIQEEQFTPAQYRQEFLVLAWEQIHFRS 536
Query: 363 ILPLQ 377
+ P Q
Sbjct: 537 LFPSQ 541
>AJF42226.1 RNA polymerase beta chain (chloroplast) [Araucaria luxurians]
AJF42956.1 RNA polymerase beta chain (chloroplast)
[Araucaria columnaris] AJF43691.1 RNA polymerase beta
chain (chloroplast) [Araucaria nemorosa] AJF43931.1 RNA
polymerase beta chain (chloroplast) [Araucaria nemorosa]
Length = 1093
Score = 161 bits (408), Expect = 1e-43
Identities = 76/125 (60%), Positives = 98/125 (78%)
Frame = +3
Query: 3 GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT 182
GGLT RTA+FR RDIHPS+YGR CPI T EG NAGL+ASL+ + +G L+SPFY ++
Sbjct: 418 GGLTPRTATFRIRDIHPSHYGRICPITTSEGMNAGLVASLSIYATLGQYGSLQSPFYKIS 477
Query: 183 KKSNEDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRS 362
++S E+HMVS LLP ED+ YRIA+ N LA++H + E++ TP QYRQ+FL +AWEQIHFRS
Sbjct: 478 ERSEEEHMVS-LLPGEDEYYRIAMGNYLALNHGIQEEQFTPAQYRQEFLVLAWEQIHFRS 536
Query: 363 ILPLQ 377
+ P Q
Sbjct: 537 LFPSQ 541
>YP_009121292.1 RNA polymerase beta chain (plastid) [Araucaria heterophylla]
AIW58323.1 RNA polymerase beta chain (plastid)
[Araucaria heterophylla] AJF41901.1 RNA polymerase beta
chain (chloroplast) [Araucaria muelleri] AJF41983.1 RNA
polymerase beta chain (chloroplast) [Araucaria
scopulorum] AJF42065.1 RNA polymerase beta chain
(chloroplast) [Araucaria muelleri] AJF42146.1 RNA
polymerase beta chain (chloroplast) [Araucaria bernieri]
AJF42305.1 RNA polymerase beta chain (chloroplast)
[Araucaria subulata] AJF42552.1 RNA polymerase beta
chain (chloroplast) [Araucaria scopulorum] AJF42712.1
RNA polymerase beta chain (chloroplast) [Araucaria
humboldtensis] AJF43038.1 RNA polymerase beta chain
(chloroplast) [Araucaria biramulata] AJF43120.1 RNA
polymerase beta chain (chloroplast) [Araucaria muelleri]
AJF43202.1 RNA polymerase beta chain (chloroplast)
[Araucaria subulata] AJF43281.1 RNA polymerase beta
chain (chloroplast) [Araucaria montana] AJF43363.1 RNA
polymerase beta chain (chloroplast) [Araucaria montana]
AJF43445.1 RNA polymerase beta chain (chloroplast)
[Araucaria laubenfelsii] AJF43527.1 RNA polymerase beta
chain (chloroplast) [Araucaria schmidii] AJF43609.1 RNA
polymerase beta chain (chloroplast) [Araucaria rulei]
AJF43769.1 RNA polymerase beta chain (chloroplast)
[Araucaria humboldtensis] AJF43851.1 RNA polymerase beta
chain (chloroplast) [Araucaria bernieri] AJF44013.1 RNA
polymerase beta chain (chloroplast) [Araucaria
laubenfelsii]
Length = 1093
Score = 161 bits (408), Expect = 1e-43
Identities = 76/125 (60%), Positives = 98/125 (78%)
Frame = +3
Query: 3 GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT 182
GGLT RTA+FR RDIHPS+YGR CPI T EG NAGL+ASL+ + +G L+SPFY ++
Sbjct: 418 GGLTPRTATFRIRDIHPSHYGRICPITTSEGMNAGLVASLSIYATLGQYGSLQSPFYKIS 477
Query: 183 KKSNEDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRS 362
++S E+HMVS LLP ED+ YRIA+ N LA++H + E++ TP QYRQ+FL +AWEQIHFRS
Sbjct: 478 ERSEEEHMVS-LLPGEDEYYRIAMGNYLALNHGIQEEQFTPAQYRQEFLVLAWEQIHFRS 536
Query: 363 ILPLQ 377
+ P Q
Sbjct: 537 LFPSQ 541
>AER45540.1 rpoB (chloroplast) [Agathis australis]
Length = 1093
Score = 161 bits (408), Expect = 1e-43
Identities = 76/125 (60%), Positives = 98/125 (78%)
Frame = +3
Query: 3 GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT 182
GGLT RTA+FR RDIHPS+YGR CPI T EG NAGL+ASL+ + +G L+SPFY ++
Sbjct: 418 GGLTPRTATFRIRDIHPSHYGRICPITTSEGMNAGLVASLSIYATLGQYGSLQSPFYKIS 477
Query: 183 KKSNEDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRS 362
++S E+HMVS LLP ED+ YRIA+ N LA++H + E++ TP QYRQ+FL +AWEQIHFRS
Sbjct: 478 ERSEEEHMVS-LLPGEDEYYRIAMGNYLALNHGIQEEQFTPAQYRQEFLVLAWEQIHFRS 536
Query: 363 ILPLQ 377
+ P Q
Sbjct: 537 LFPSQ 541
>AET47520.1 RNA polymerase beta subunit (chloroplast) [Pinus lumholtzii]
AET47592.1 RNA polymerase beta subunit (chloroplast)
[Pinus leiophylla] AET48382.1 RNA polymerase beta
subunit (chloroplast) [Pinus greggii]
Length = 1074
Score = 160 bits (405), Expect = 3e-43
Identities = 77/127 (60%), Positives = 98/127 (77%), Gaps = 2/127 (1%)
Frame = +3
Query: 3 GGLTERTASFRARDIHPSYYGRFCPINTPEGQNAGLIASLANSVNVDDFGFLKSPFYNVT 182
GGLT RTASFR RDIHPSYYGR CPI+T EG NAGL+ASL+ + D G L+SPFY ++
Sbjct: 401 GGLTGRTASFRTRDIHPSYYGRICPIDTSEGMNAGLVASLSIHAKIGDCGSLQSPFYKIS 460
Query: 183 KKSNEDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHF 356
++S E+HMV YLLP ED++ YRIA N LA++ + E++ TP +YRQ+F+ +AWEQIHF
Sbjct: 461 ERSREEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQTTPARYRQEFIVIAWEQIHF 519
Query: 357 RSILPLQ 377
RSI P Q
Sbjct: 520 RSIFPFQ 526