BLASTX nr result
ID: Ephedra29_contig00022828
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra29_contig00022828
(400 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_019081677.1 PREDICTED: cleavage and polyadenylation specifici... 68 1e-10
XP_019081676.1 PREDICTED: cleavage and polyadenylation specifici... 68 1e-10
XP_002268371.1 PREDICTED: cleavage and polyadenylation specifici... 68 1e-10
CBI24510.3 unnamed protein product, partial [Vitis vinifera] 68 1e-10
XP_019081674.1 PREDICTED: cleavage and polyadenylation specifici... 68 1e-10
JAU61394.1 Cleavage and polyadenylation specificity factor subun... 66 6e-10
JAU41664.1 Cleavage and polyadenylation specificity factor subun... 66 6e-10
KFK26774.1 hypothetical protein AALP_AA8G292000 [Arabis alpina] 66 6e-10
JAU22925.1 Cleavage and polyadenylation specificity factor subun... 65 9e-10
XP_006401932.1 hypothetical protein EUTSA_v10012441mg [Eutrema s... 65 1e-09
NP_001331730.1 cleavage and polyadenylation specificity factor 1... 65 2e-09
NP_001331731.1 cleavage and polyadenylation specificity factor 1... 65 2e-09
NP_001331729.1 cleavage and polyadenylation specificity factor 1... 65 2e-09
OAO92361.1 CPSF160 [Arabidopsis thaliana] 65 2e-09
NP_199979.2 cleavage and polyadenylation specificity factor 160 ... 65 2e-09
AAN41460.1 putative cleavage and polyadenylation specificity fac... 65 2e-09
BAB11613.1 cleavage and polyadenylation specificity factor subun... 65 2e-09
KCW46268.1 hypothetical protein EUGRSUZ_K00143 [Eucalyptus grandis] 64 2e-09
JAU87802.1 Cleavage and polyadenylation specificity factor subun... 64 2e-09
XP_010035005.1 PREDICTED: cleavage and polyadenylation specifici... 64 2e-09
>XP_019081677.1 PREDICTED: cleavage and polyadenylation specificity factor subunit
1 isoform X4 [Vitis vinifera]
Length = 1247
Score = 67.8 bits (164), Expect = 1e-10
Identities = 42/111 (37%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Frame = -1
Query: 334 MSYAAFKMIHEPTGVENCGVGFITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDAGA 155
MSYAA+KM+H PTG+ENC GF+T DD +
Sbjct: 1 MSYAAYKMMHWPTGIENCASGFVTHSRADFAPQIAPIQT----------------DDLES 44
Query: 154 P-PPKNWSAPLPNIVITKANIVEVYSLRLHEDIKRPLPLSSSSSVKRGNVM 5
P K PLPN+++T ANI+EVY +R+ ED R +S+ KRG VM
Sbjct: 45 EWPTKRQIGPLPNLIVTAANILEVYMVRVQEDDSR--ESRASAETKRGGVM 93
>XP_019081676.1 PREDICTED: cleavage and polyadenylation specificity factor subunit
1 isoform X3 [Vitis vinifera]
Length = 1308
Score = 67.8 bits (164), Expect = 1e-10
Identities = 42/111 (37%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Frame = -1
Query: 334 MSYAAFKMIHEPTGVENCGVGFITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDAGA 155
MSYAA+KM+H PTG+ENC GF+T DD +
Sbjct: 1 MSYAAYKMMHWPTGIENCASGFVTHSRADFAPQIAPIQT----------------DDLES 44
Query: 154 P-PPKNWSAPLPNIVITKANIVEVYSLRLHEDIKRPLPLSSSSSVKRGNVM 5
P K PLPN+++T ANI+EVY +R+ ED R +S+ KRG VM
Sbjct: 45 EWPTKRQIGPLPNLIVTAANILEVYMVRVQEDDSR--ESRASAETKRGGVM 93
>XP_002268371.1 PREDICTED: cleavage and polyadenylation specificity factor subunit
1 isoform X2 [Vitis vinifera]
Length = 1442
Score = 67.8 bits (164), Expect = 1e-10
Identities = 42/111 (37%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Frame = -1
Query: 334 MSYAAFKMIHEPTGVENCGVGFITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDAGA 155
MSYAA+KM+H PTG+ENC GF+T DD +
Sbjct: 1 MSYAAYKMMHWPTGIENCASGFVTHSRADFAPQIAPIQT----------------DDLES 44
Query: 154 P-PPKNWSAPLPNIVITKANIVEVYSLRLHEDIKRPLPLSSSSSVKRGNVM 5
P K PLPN+++T ANI+EVY +R+ ED R +S+ KRG VM
Sbjct: 45 EWPTKRQIGPLPNLIVTAANILEVYMVRVQEDDSR--ESRASAETKRGGVM 93
>CBI24510.3 unnamed protein product, partial [Vitis vinifera]
Length = 1448
Score = 67.8 bits (164), Expect = 1e-10
Identities = 42/111 (37%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Frame = -1
Query: 334 MSYAAFKMIHEPTGVENCGVGFITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDAGA 155
MSYAA+KM+H PTG+ENC GF+T DD +
Sbjct: 1 MSYAAYKMMHWPTGIENCASGFVTHSRADFAPQIAPIQT----------------DDLES 44
Query: 154 P-PPKNWSAPLPNIVITKANIVEVYSLRLHEDIKRPLPLSSSSSVKRGNVM 5
P K PLPN+++T ANI+EVY +R+ ED R +S+ KRG VM
Sbjct: 45 EWPTKRQIGPLPNLIVTAANILEVYMVRVQEDDSR--ESRASAETKRGGVM 93
>XP_019081674.1 PREDICTED: cleavage and polyadenylation specificity factor subunit
1 isoform X1 [Vitis vinifera] XP_019081675.1 PREDICTED:
cleavage and polyadenylation specificity factor subunit
1 isoform X1 [Vitis vinifera]
Length = 1449
Score = 67.8 bits (164), Expect = 1e-10
Identities = 42/111 (37%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Frame = -1
Query: 334 MSYAAFKMIHEPTGVENCGVGFITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDAGA 155
MSYAA+KM+H PTG+ENC GF+T DD +
Sbjct: 1 MSYAAYKMMHWPTGIENCASGFVTHSRADFAPQIAPIQT----------------DDLES 44
Query: 154 P-PPKNWSAPLPNIVITKANIVEVYSLRLHEDIKRPLPLSSSSSVKRGNVM 5
P K PLPN+++T ANI+EVY +R+ ED R +S+ KRG VM
Sbjct: 45 EWPTKRQIGPLPNLIVTAANILEVYMVRVQEDDSR--ESRASAETKRGGVM 93
>JAU61394.1 Cleavage and polyadenylation specificity factor subunit 1 [Noccaea
caerulescens]
Length = 1439
Score = 65.9 bits (159), Expect = 6e-10
Identities = 40/110 (36%), Positives = 52/110 (47%)
Frame = -1
Query: 334 MSYAAFKMIHEPTGVENCGVGFITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDAGA 155
MS+AAFKM+H PTGVENC G+IT +A
Sbjct: 1 MSFAAFKMMHWPTGVENCASGYITHSLSDSTLQIPIVSGDDL--------------EADW 46
Query: 154 PPPKNWSAPLPNIVITKANIVEVYSLRLHEDIKRPLPLSSSSSVKRGNVM 5
P PK +PN+VIT NI+EVY +R+ E++ +S KRG VM
Sbjct: 47 PAPKRGIGAVPNVVITAGNILEVYVVRVQEELNCSQEPRNSKLAKRGGVM 96
>JAU41664.1 Cleavage and polyadenylation specificity factor subunit 1 [Noccaea
caerulescens]
Length = 1439
Score = 65.9 bits (159), Expect = 6e-10
Identities = 40/110 (36%), Positives = 52/110 (47%)
Frame = -1
Query: 334 MSYAAFKMIHEPTGVENCGVGFITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDAGA 155
MS+AAFKM+H PTGVENC G+IT +A
Sbjct: 1 MSFAAFKMMHWPTGVENCASGYITHSLSDSTLQIPIVSGDDL--------------EADW 46
Query: 154 PPPKNWSAPLPNIVITKANIVEVYSLRLHEDIKRPLPLSSSSSVKRGNVM 5
P PK +PN+VIT NI+EVY +R+ E++ +S KRG VM
Sbjct: 47 PAPKRGIGAVPNVVITAGNILEVYVVRVQEELNCSQEPRNSKLAKRGGVM 96
>KFK26774.1 hypothetical protein AALP_AA8G292000 [Arabis alpina]
Length = 1440
Score = 65.9 bits (159), Expect = 6e-10
Identities = 40/110 (36%), Positives = 51/110 (46%)
Frame = -1
Query: 334 MSYAAFKMIHEPTGVENCGVGFITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDAGA 155
MS+AAFKM+H PTGVENC G+IT +A
Sbjct: 1 MSFAAFKMMHWPTGVENCASGYITHSFSDSTIQIPIPSGDDL--------------EAEW 46
Query: 154 PPPKNWSAPLPNIVITKANIVEVYSLRLHEDIKRPLPLSSSSSVKRGNVM 5
P PK +PN+VIT NI+EVY +R+ E+ L + KRG VM
Sbjct: 47 PAPKRGIGSVPNVVITAGNILEVYVVRVQEEANSSQELRNPKLAKRGGVM 96
>JAU22925.1 Cleavage and polyadenylation specificity factor subunit 1 [Noccaea
caerulescens]
Length = 1439
Score = 65.5 bits (158), Expect = 9e-10
Identities = 39/110 (35%), Positives = 52/110 (47%)
Frame = -1
Query: 334 MSYAAFKMIHEPTGVENCGVGFITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDAGA 155
MS+AAFKM+H PTGVENC G+IT +A
Sbjct: 1 MSFAAFKMMHWPTGVENCASGYITHSLSDSTLQIPIVSGDDL--------------EADW 46
Query: 154 PPPKNWSAPLPNIVITKANIVEVYSLRLHEDIKRPLPLSSSSSVKRGNVM 5
P PK +PN+VIT NI++VY +R+ E++ +S KRG VM
Sbjct: 47 PAPKRGIGAVPNVVITAGNILDVYVVRVQEELNSSQEPRNSKLAKRGGVM 96
>XP_006401932.1 hypothetical protein EUTSA_v10012441mg [Eutrema salsugineum]
ESQ43385.1 hypothetical protein EUTSA_v10012441mg
[Eutrema salsugineum]
Length = 1445
Score = 65.1 bits (157), Expect = 1e-09
Identities = 39/110 (35%), Positives = 52/110 (47%)
Frame = -1
Query: 334 MSYAAFKMIHEPTGVENCGVGFITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDAGA 155
MS+AAFKM+H PTGVENC G+IT +A
Sbjct: 1 MSFAAFKMMHWPTGVENCASGYITHSISDTTTQQIPIVSGDDL-------------EAEW 47
Query: 154 PPPKNWSAPLPNIVITKANIVEVYSLRLHEDIKRPLPLSSSSSVKRGNVM 5
P PK +PN+VIT NI+EVY +R+ E++ + V+RG VM
Sbjct: 48 PAPKRGIGAVPNVVITAGNILEVYVVRVQEEVNTSQEPRNPKLVRRGGVM 97
>NP_001331730.1 cleavage and polyadenylation specificity factor 160 [Arabidopsis
thaliana] ANM70095.1 cleavage and polyadenylation
specificity factor 160 [Arabidopsis thaliana]
Length = 1239
Score = 64.7 bits (156), Expect = 2e-09
Identities = 42/110 (38%), Positives = 52/110 (47%)
Frame = -1
Query: 334 MSYAAFKMIHEPTGVENCGVGFITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDAGA 155
MS+AA+KM+H PTGVENC G+IT +A
Sbjct: 1 MSFAAYKMMHWPTGVENCASGYITHSLSDSTLQIPIVSVHDDI-------------EAEW 47
Query: 154 PPPKNWSAPLPNIVITKANIVEVYSLRLHEDIKRPLPLSSSSSVKRGNVM 5
P PK PLPN+VIT ANI+EVY +R E+ L + KRG VM
Sbjct: 48 PNPKRGIGPLPNVVITAANILEVYIVRAQEE-GNTQELRNPKLAKRGGVM 96
>NP_001331731.1 cleavage and polyadenylation specificity factor 160 [Arabidopsis
thaliana] ANM70096.1 cleavage and polyadenylation
specificity factor 160 [Arabidopsis thaliana]
Length = 1311
Score = 64.7 bits (156), Expect = 2e-09
Identities = 42/110 (38%), Positives = 52/110 (47%)
Frame = -1
Query: 334 MSYAAFKMIHEPTGVENCGVGFITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDAGA 155
MS+AA+KM+H PTGVENC G+IT +A
Sbjct: 1 MSFAAYKMMHWPTGVENCASGYITHSLSDSTLQIPIVSVHDDI-------------EAEW 47
Query: 154 PPPKNWSAPLPNIVITKANIVEVYSLRLHEDIKRPLPLSSSSSVKRGNVM 5
P PK PLPN+VIT ANI+EVY +R E+ L + KRG VM
Sbjct: 48 PNPKRGIGPLPNVVITAANILEVYIVRAQEE-GNTQELRNPKLAKRGGVM 96
>NP_001331729.1 cleavage and polyadenylation specificity factor 160 [Arabidopsis
thaliana] ANM70094.1 cleavage and polyadenylation
specificity factor 160 [Arabidopsis thaliana]
Length = 1317
Score = 64.7 bits (156), Expect = 2e-09
Identities = 42/110 (38%), Positives = 52/110 (47%)
Frame = -1
Query: 334 MSYAAFKMIHEPTGVENCGVGFITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDAGA 155
MS+AA+KM+H PTGVENC G+IT +A
Sbjct: 1 MSFAAYKMMHWPTGVENCASGYITHSLSDSTLQIPIVSVHDDI-------------EAEW 47
Query: 154 PPPKNWSAPLPNIVITKANIVEVYSLRLHEDIKRPLPLSSSSSVKRGNVM 5
P PK PLPN+VIT ANI+EVY +R E+ L + KRG VM
Sbjct: 48 PNPKRGIGPLPNVVITAANILEVYIVRAQEE-GNTQELRNPKLAKRGGVM 96
>OAO92361.1 CPSF160 [Arabidopsis thaliana]
Length = 1442
Score = 64.7 bits (156), Expect = 2e-09
Identities = 42/110 (38%), Positives = 52/110 (47%)
Frame = -1
Query: 334 MSYAAFKMIHEPTGVENCGVGFITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDAGA 155
MS+AA+KM+H PTGVENC G+IT +A
Sbjct: 1 MSFAAYKMMHWPTGVENCASGYITHSLSDSTLQIPIVSGHDDI-------------EAEW 47
Query: 154 PPPKNWSAPLPNIVITKANIVEVYSLRLHEDIKRPLPLSSSSSVKRGNVM 5
P PK PLPN+VIT ANI+EVY +R E+ L + KRG VM
Sbjct: 48 PNPKRGIGPLPNVVITAANILEVYIVRAQEE-GNTQELRNPKLAKRGGVM 96
>NP_199979.2 cleavage and polyadenylation specificity factor 160 [Arabidopsis
thaliana] Q9FGR0.2 RecName: Full=Cleavage and
polyadenylation specificity factor subunit 1; AltName:
Full=Cleavage and polyadenylation specificity factor 160
kDa subunit; Short=AtCPSF160; Short=CPSF 160 kDa subunit
AED96112.1 cleavage and polyadenylation specificity
factor 160 [Arabidopsis thaliana]
Length = 1442
Score = 64.7 bits (156), Expect = 2e-09
Identities = 42/110 (38%), Positives = 52/110 (47%)
Frame = -1
Query: 334 MSYAAFKMIHEPTGVENCGVGFITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDAGA 155
MS+AA+KM+H PTGVENC G+IT +A
Sbjct: 1 MSFAAYKMMHWPTGVENCASGYITHSLSDSTLQIPIVSVHDDI-------------EAEW 47
Query: 154 PPPKNWSAPLPNIVITKANIVEVYSLRLHEDIKRPLPLSSSSSVKRGNVM 5
P PK PLPN+VIT ANI+EVY +R E+ L + KRG VM
Sbjct: 48 PNPKRGIGPLPNVVITAANILEVYIVRAQEE-GNTQELRNPKLAKRGGVM 96
>AAN41460.1 putative cleavage and polyadenylation specificity factor 160 kDa
subunit [Arabidopsis thaliana]
Length = 1442
Score = 64.7 bits (156), Expect = 2e-09
Identities = 42/110 (38%), Positives = 52/110 (47%)
Frame = -1
Query: 334 MSYAAFKMIHEPTGVENCGVGFITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDAGA 155
MS+AA+KM+H PTGVENC G+IT +A
Sbjct: 1 MSFAAYKMMHWPTGVENCASGYITHSLSDSTLQIPIVSVHDDI-------------EAEW 47
Query: 154 PPPKNWSAPLPNIVITKANIVEVYSLRLHEDIKRPLPLSSSSSVKRGNVM 5
P PK PLPN+VIT ANI+EVY +R E+ L + KRG VM
Sbjct: 48 PNPKRGIGPLPNVVITAANILEVYIVRAQEE-GNTQELRNPKLAKRGGVM 96
>BAB11613.1 cleavage and polyadenylation specificity factor subunit
[Arabidopsis thaliana]
Length = 1448
Score = 64.7 bits (156), Expect = 2e-09
Identities = 42/110 (38%), Positives = 52/110 (47%)
Frame = -1
Query: 334 MSYAAFKMIHEPTGVENCGVGFITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDAGA 155
MS+AA+KM+H PTGVENC G+IT +A
Sbjct: 1 MSFAAYKMMHWPTGVENCASGYITHSLSDSTLQIPIVSVHDDI-------------EAEW 47
Query: 154 PPPKNWSAPLPNIVITKANIVEVYSLRLHEDIKRPLPLSSSSSVKRGNVM 5
P PK PLPN+VIT ANI+EVY +R E+ L + KRG VM
Sbjct: 48 PNPKRGIGPLPNVVITAANILEVYIVRAQEE-GNTQELRNPKLAKRGGVM 96
>KCW46268.1 hypothetical protein EUGRSUZ_K00143 [Eucalyptus grandis]
Length = 1415
Score = 64.3 bits (155), Expect = 2e-09
Identities = 38/110 (34%), Positives = 52/110 (47%)
Frame = -1
Query: 334 MSYAAFKMIHEPTGVENCGVGFITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDAGA 155
MSYAA+KM+H PTG++NCG GFIT +
Sbjct: 1 MSYAAYKMMHWPTGIDNCGSGFITHSPSDFPPRIPPSQTDDL--------------EPDY 46
Query: 154 PPPKNWSAPLPNIVITKANIVEVYSLRLHEDIKRPLPLSSSSSVKRGNVM 5
PP+ P+PN+V+T AN++EVY +R+ ED + S KRG M
Sbjct: 47 APPRREIGPVPNLVVTAANVLEVYVVRVQEDGDK-----DSGESKRGGAM 91
>JAU87802.1 Cleavage and polyadenylation specificity factor subunit 1 [Noccaea
caerulescens]
Length = 1439
Score = 64.3 bits (155), Expect = 2e-09
Identities = 39/110 (35%), Positives = 51/110 (46%)
Frame = -1
Query: 334 MSYAAFKMIHEPTGVENCGVGFITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDAGA 155
MS+AAFKM+H PTGVENC G+IT +A
Sbjct: 1 MSFAAFKMMHWPTGVENCASGYITHPLSDSTLQIPIVSGDDL--------------EADW 46
Query: 154 PPPKNWSAPLPNIVITKANIVEVYSLRLHEDIKRPLPLSSSSSVKRGNVM 5
P P +PN+VIT NI+EVY +R+ E++ +S KRG VM
Sbjct: 47 PAPMRGIGAVPNVVITAGNILEVYVVRVQEELNSSQEPRNSKLAKRGGVM 96
>XP_010035005.1 PREDICTED: cleavage and polyadenylation specificity factor subunit
1 isoform X1 [Eucalyptus grandis] XP_018720788.1
PREDICTED: cleavage and polyadenylation specificity
factor subunit 1 isoform X1 [Eucalyptus grandis]
KCW46267.1 hypothetical protein EUGRSUZ_K00143
[Eucalyptus grandis]
Length = 1451
Score = 64.3 bits (155), Expect = 2e-09
Identities = 38/110 (34%), Positives = 52/110 (47%)
Frame = -1
Query: 334 MSYAAFKMIHEPTGVENCGVGFITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDAGA 155
MSYAA+KM+H PTG++NCG GFIT +
Sbjct: 1 MSYAAYKMMHWPTGIDNCGSGFITHSPSDFPPRIPPSQTDDL--------------EPDY 46
Query: 154 PPPKNWSAPLPNIVITKANIVEVYSLRLHEDIKRPLPLSSSSSVKRGNVM 5
PP+ P+PN+V+T AN++EVY +R+ ED + S KRG M
Sbjct: 47 APPRREIGPVPNLVVTAANVLEVYVVRVQEDGDK-----DSGESKRGGAM 91