BLASTX nr result
ID: Ephedra29_contig00021216
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra29_contig00021216
(497 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_010918168.1 PREDICTED: cleavage and polyadenylation specifici... 57 2e-06
XP_010918167.1 PREDICTED: cleavage and polyadenylation specifici... 57 2e-06
XP_010109097.1 Cleavage and polyadenylation specificity factor s... 57 2e-06
XP_008791966.1 PREDICTED: cleavage and polyadenylation specifici... 57 3e-06
XP_008791964.1 PREDICTED: cleavage and polyadenylation specifici... 57 3e-06
XP_008791963.1 PREDICTED: cleavage and polyadenylation specifici... 57 3e-06
ONM18545.1 Cleavage and polyadenylation specificity factor subun... 56 3e-06
ONM18549.1 Cleavage and polyadenylation specificity factor subun... 56 4e-06
ONM18548.1 Cleavage and polyadenylation specificity factor subun... 56 4e-06
XP_008671403.1 PREDICTED: LOW QUALITY PROTEIN: probable cleavage... 56 4e-06
XP_011043709.1 PREDICTED: cleavage and polyadenylation specifici... 56 5e-06
XP_002318462.2 cleavage and polyadenylation specificity factor f... 56 5e-06
XP_010277399.1 PREDICTED: cleavage and polyadenylation specifici... 56 5e-06
XP_008234350.1 PREDICTED: cleavage and polyadenylation specifici... 56 5e-06
KXG25931.1 hypothetical protein SORBI_006G033000 [Sorghum bicolor] 55 6e-06
KXG25930.1 hypothetical protein SORBI_006G033000 [Sorghum bicolor] 55 6e-06
XP_014512862.1 PREDICTED: cleavage and polyadenylation specifici... 55 6e-06
AGT16572.1 cleavage and polyadenylation specificity factor subun... 55 6e-06
XP_014512856.1 PREDICTED: cleavage and polyadenylation specifici... 55 6e-06
XP_014512849.1 PREDICTED: cleavage and polyadenylation specifici... 55 7e-06
>XP_010918168.1 PREDICTED: cleavage and polyadenylation specificity factor subunit
1 isoform X2 [Elaeis guineensis]
Length = 1455
Score = 57.0 bits (136), Expect = 2e-06
Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Frame = -1
Query: 407 IGARSADSTTACTLYLAKGPKPWLQKTSSVA*ISTDAA-----------TQDDTYLVVC* 261
I A S +ACTLY KGP+PWL+KTS+ A +ST A Q D Y +VC
Sbjct: 724 IFANSTKLISACTLYHDKGPEPWLRKTSTDAWLSTGIAEPIDGSDGSYHDQGDVYCLVCY 783
Query: 260 ESGRLDILRFQALHVSFIVDTY 195
E+GRLDI F V+ +
Sbjct: 784 ENGRLDIFDVPTFKCVFSVENF 805
>XP_010918167.1 PREDICTED: cleavage and polyadenylation specificity factor subunit
1 isoform X1 [Elaeis guineensis]
Length = 1456
Score = 57.0 bits (136), Expect = 2e-06
Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Frame = -1
Query: 407 IGARSADSTTACTLYLAKGPKPWLQKTSSVA*ISTDAA-----------TQDDTYLVVC* 261
I A S +ACTLY KGP+PWL+KTS+ A +ST A Q D Y +VC
Sbjct: 724 IFANSTKLISACTLYHDKGPEPWLRKTSTDAWLSTGIAEPIDGSDGSYHDQGDVYCLVCY 783
Query: 260 ESGRLDILRFQALHVSFIVDTY 195
E+GRLDI F V+ +
Sbjct: 784 ENGRLDIFDVPTFKCVFSVENF 805
>XP_010109097.1 Cleavage and polyadenylation specificity factor subunit 1 [Morus
notabilis] EXC20897.1 Cleavage and polyadenylation
specificity factor subunit 1 [Morus notabilis]
Length = 1479
Score = 57.0 bits (136), Expect = 2e-06
Identities = 34/73 (46%), Positives = 42/73 (57%), Gaps = 11/73 (15%)
Frame = -1
Query: 380 TACTLYLAKGPKPWLQKTSSVA*IST---------DAATQD--DTYLVVC*ESGRLDILR 234
+ACTLY KGP+PWL+KTS+ A +ST D QD D Y VVC ESG LDI
Sbjct: 734 SACTLYRDKGPEPWLRKTSTDAWLSTGVDEAIDGADETLQDQGDIYCVVCYESGSLDIYD 793
Query: 233 FQALHVSFIVDTY 195
+ + F VD +
Sbjct: 794 VPSFNYVFSVDNF 806
>XP_008791966.1 PREDICTED: cleavage and polyadenylation specificity factor subunit
1 isoform X3 [Phoenix dactylifera]
Length = 1455
Score = 56.6 bits (135), Expect = 3e-06
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Frame = -1
Query: 407 IGARSADSTTACTLYLAKGPKPWLQKTSSVA*ISTDAA-----------TQDDTYLVVC* 261
I A S S + CTLY KGP+PWL+KTS+ A +ST A Q D Y +VC
Sbjct: 723 IFANSTKSISTCTLYHDKGPEPWLRKTSTDAWLSTGIAETIDGNDGSYHDQGDVYCLVCY 782
Query: 260 ESGRLDILRFQALHVSFIVDTY 195
++GRLDI F V+ +
Sbjct: 783 DNGRLDIFDVPTFKCVFSVENF 804
>XP_008791964.1 PREDICTED: cleavage and polyadenylation specificity factor subunit
1 isoform X2 [Phoenix dactylifera]
Length = 1455
Score = 56.6 bits (135), Expect = 3e-06
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Frame = -1
Query: 407 IGARSADSTTACTLYLAKGPKPWLQKTSSVA*ISTDAA-----------TQDDTYLVVC* 261
I A S S + CTLY KGP+PWL+KTS+ A +ST A Q D Y +VC
Sbjct: 724 IFANSTKSISTCTLYHDKGPEPWLRKTSTDAWLSTGIAETIDGNDGSYHDQGDVYCLVCY 783
Query: 260 ESGRLDILRFQALHVSFIVDTY 195
++GRLDI F V+ +
Sbjct: 784 DNGRLDIFDVPTFKCVFSVENF 805
>XP_008791963.1 PREDICTED: cleavage and polyadenylation specificity factor subunit
1 isoform X1 [Phoenix dactylifera]
Length = 1456
Score = 56.6 bits (135), Expect = 3e-06
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Frame = -1
Query: 407 IGARSADSTTACTLYLAKGPKPWLQKTSSVA*ISTDAA-----------TQDDTYLVVC* 261
I A S S + CTLY KGP+PWL+KTS+ A +ST A Q D Y +VC
Sbjct: 724 IFANSTKSISTCTLYHDKGPEPWLRKTSTDAWLSTGIAETIDGNDGSYHDQGDVYCLVCY 783
Query: 260 ESGRLDILRFQALHVSFIVDTY 195
++GRLDI F V+ +
Sbjct: 784 DNGRLDIFDVPTFKCVFSVENF 805
>ONM18545.1 Cleavage and polyadenylation specificity factor subunit 1 [Zea
mays]
Length = 1184
Score = 56.2 bits (134), Expect = 3e-06
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Frame = -1
Query: 407 IGARSADSTTACTLYLAKGPKPWLQKTSSVA*ISTDAATQ-----------DDTYLVVC* 261
I A S++ +ACTLY +GP+PWL+KT + A +STD D Y ++C
Sbjct: 694 IFASSSERISACTLYCDRGPEPWLRKTHTDAWLSTDVGEAIDDNDNSSHDLSDIYCIICY 753
Query: 260 ESGRLDILRFQALHVSFIVDTY 195
ESG+L+I + F VD +
Sbjct: 754 ESGKLEIFEVPSFKRVFSVDNF 775
>ONM18549.1 Cleavage and polyadenylation specificity factor subunit 1 [Zea
mays]
Length = 1212
Score = 56.2 bits (134), Expect = 4e-06
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Frame = -1
Query: 407 IGARSADSTTACTLYLAKGPKPWLQKTSSVA*ISTDAATQ-----------DDTYLVVC* 261
I A S++ +ACTLY +GP+PWL+KT + A +STD D Y ++C
Sbjct: 722 IFASSSERISACTLYCDRGPEPWLRKTHTDAWLSTDVGEAIDDNDNSSHDLSDIYCIICY 781
Query: 260 ESGRLDILRFQALHVSFIVDTY 195
ESG+L+I + F VD +
Sbjct: 782 ESGKLEIFEVPSFKRVFSVDNF 803
>ONM18548.1 Cleavage and polyadenylation specificity factor subunit 1 [Zea
mays]
Length = 1215
Score = 56.2 bits (134), Expect = 4e-06
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Frame = -1
Query: 407 IGARSADSTTACTLYLAKGPKPWLQKTSSVA*ISTDAATQ-----------DDTYLVVC* 261
I A S++ +ACTLY +GP+PWL+KT + A +STD D Y ++C
Sbjct: 722 IFASSSERISACTLYCDRGPEPWLRKTHTDAWLSTDVGEAIDDNDNSSHDLSDIYCIICY 781
Query: 260 ESGRLDILRFQALHVSFIVDTY 195
ESG+L+I + F VD +
Sbjct: 782 ESGKLEIFEVPSFKRVFSVDNF 803
>XP_008671403.1 PREDICTED: LOW QUALITY PROTEIN: probable cleavage and
polyadenylation specificity factor subunit 1 [Zea mays]
Length = 1438
Score = 56.2 bits (134), Expect = 4e-06
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Frame = -1
Query: 407 IGARSADSTTACTLYLAKGPKPWLQKTSSVA*ISTDAATQ-----------DDTYLVVC* 261
I A S++ +ACTLY +GP+PWL+KT + A +STD D Y ++C
Sbjct: 722 IFASSSERISACTLYCDRGPEPWLRKTHTDAWLSTDVGEAIDDNDNSSHDLSDIYCIICY 781
Query: 260 ESGRLDILRFQALHVSFIVDTY 195
ESG+L+I + F VD +
Sbjct: 782 ESGKLEIFEVPSFKRVFSVDNF 803
>XP_011043709.1 PREDICTED: cleavage and polyadenylation specificity factor subunit
1 [Populus euphratica]
Length = 1450
Score = 55.8 bits (133), Expect = 5e-06
Identities = 33/78 (42%), Positives = 42/78 (53%), Gaps = 11/78 (14%)
Frame = -1
Query: 395 SADSTTACTLYLAKGPKPWLQKTSSVA*IST-----------DAATQDDTYLVVC*ESGR 249
S S +ACTLY KGP+PWL+KTS+ A +ST A Q D Y VVC E+G
Sbjct: 727 STKSVSACTLYHDKGPEPWLRKTSTDAWLSTGISEAIDGADSGAHEQGDIYCVVCYETGA 786
Query: 248 LDILRFQALHVSFIVDTY 195
L+I + F VD +
Sbjct: 787 LEIFDVPNFNSVFFVDKF 804
>XP_002318462.2 cleavage and polyadenylation specificity factor family protein
[Populus trichocarpa] EEE96682.2 cleavage and
polyadenylation specificity factor family protein
[Populus trichocarpa]
Length = 1455
Score = 55.8 bits (133), Expect = 5e-06
Identities = 33/78 (42%), Positives = 42/78 (53%), Gaps = 11/78 (14%)
Frame = -1
Query: 395 SADSTTACTLYLAKGPKPWLQKTSSVA*IST-----------DAATQDDTYLVVC*ESGR 249
S S +ACTLY KGP+PWL+KTS+ A +ST A Q D Y VVC E+G
Sbjct: 732 STKSVSACTLYHDKGPEPWLRKTSTDAWLSTGISEAIDGADSGAHEQGDIYCVVCYETGA 791
Query: 248 LDILRFQALHVSFIVDTY 195
L+I + F VD +
Sbjct: 792 LEIFDVPNFNSVFFVDKF 809
>XP_010277399.1 PREDICTED: cleavage and polyadenylation specificity factor subunit
1 [Nelumbo nucifera]
Length = 1457
Score = 55.8 bits (133), Expect = 5e-06
Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 11/76 (14%)
Frame = -1
Query: 389 DSTTACTLYLAKGPKPWLQKTSSVA*IST---------DAATQD--DTYLVVC*ESGRLD 243
+S +ACTLY KGP+PWL+KTS+ A +ST D A D D Y +VC ESG L+
Sbjct: 732 ESISACTLYHDKGPEPWLRKTSTDAWLSTGIGEAIDGADGAPSDQGDIYCLVCYESGTLE 791
Query: 242 ILRFQALHVSFIVDTY 195
I + F VD +
Sbjct: 792 IFEVPSFKCVFSVDKF 807
>XP_008234350.1 PREDICTED: cleavage and polyadenylation specificity factor subunit
1 [Prunus mume]
Length = 1459
Score = 55.8 bits (133), Expect = 5e-06
Identities = 35/78 (44%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Frame = -1
Query: 395 SADSTTACTLYLAKGPKPWLQKTSSVA*IST------DAA-----TQDDTYLVVC*ESGR 249
S S +ACTLY KGP+PWL+KTS+ A +ST D A Q D Y VVC ESG
Sbjct: 731 STKSISACTLYHDKGPEPWLRKTSTDAWLSTGIDEAIDGADGVSHDQGDVYCVVCYESGS 790
Query: 248 LDILRFQALHVSFIVDTY 195
L+I + F VD +
Sbjct: 791 LEIFDVPNFNCVFSVDKF 808
>KXG25931.1 hypothetical protein SORBI_006G033000 [Sorghum bicolor]
Length = 779
Score = 55.5 bits (132), Expect = 6e-06
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 11/82 (13%)
Frame = -1
Query: 407 IGARSADSTTACTLYLAKGPKPWLQKTSSVA*IST---------DAATQD--DTYLVVC* 261
I A S++ ++CTLY +GP+PWL+KT + A IST D ++ D D Y ++C
Sbjct: 61 ICASSSERISSCTLYCDRGPEPWLRKTRTDAWISTGIGEVTDVNDNSSHDLSDIYCIICY 120
Query: 260 ESGRLDILRFQALHVSFIVDTY 195
ESG+L+I + F VD +
Sbjct: 121 ESGKLEIFEVPSFKCVFSVDNF 142
>KXG25930.1 hypothetical protein SORBI_006G033000 [Sorghum bicolor]
Length = 780
Score = 55.5 bits (132), Expect = 6e-06
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 11/82 (13%)
Frame = -1
Query: 407 IGARSADSTTACTLYLAKGPKPWLQKTSSVA*IST---------DAATQD--DTYLVVC* 261
I A S++ ++CTLY +GP+PWL+KT + A IST D ++ D D Y ++C
Sbjct: 61 ICASSSERISSCTLYCDRGPEPWLRKTRTDAWISTGIGEVTDVNDNSSHDLSDIYCIICY 120
Query: 260 ESGRLDILRFQALHVSFIVDTY 195
ESG+L+I + F VD +
Sbjct: 121 ESGKLEIFEVPSFKCVFSVDNF 142
>XP_014512862.1 PREDICTED: cleavage and polyadenylation specificity factor subunit
1 isoform X4 [Vigna radiata var. radiata]
Length = 1217
Score = 55.5 bits (132), Expect = 6e-06
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 11/75 (14%)
Frame = -1
Query: 386 STTACTLYLAKGPKPWLQKTSSVA*IS---------TDAATQD--DTYLVVC*ESGRLDI 240
S ++CTLY KGP+PWL+KTS+ A +S TD A QD D Y VVC ++G L+I
Sbjct: 497 SVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAAQDHGDIYCVVCFDNGNLEI 556
Query: 239 LRFQALHVSFIVDTY 195
+ F V+T+
Sbjct: 557 FDVPNFNCVFSVETF 571
>AGT16572.1 cleavage and polyadenylation specificity factor subunit [Saccharum
hybrid cultivar R570]
Length = 1301
Score = 55.5 bits (132), Expect = 6e-06
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 11/82 (13%)
Frame = -1
Query: 407 IGARSADSTTACTLYLAKGPKPWLQKTSSVA*IST---------DAATQD--DTYLVVC* 261
I A S++ ++CTLY +GP+PWL+KT + A IST D ++ D D Y ++C
Sbjct: 696 IFASSSERISSCTLYCDRGPEPWLRKTRTDAWISTGIGEATDVNDNSSHDLSDIYCIICY 755
Query: 260 ESGRLDILRFQALHVSFIVDTY 195
ESG+L+I + F VD +
Sbjct: 756 ESGKLEIFEVPSFKCVFSVDNF 777
>XP_014512856.1 PREDICTED: cleavage and polyadenylation specificity factor subunit
1 isoform X3 [Vigna radiata var. radiata]
Length = 1304
Score = 55.5 bits (132), Expect = 6e-06
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 11/75 (14%)
Frame = -1
Query: 386 STTACTLYLAKGPKPWLQKTSSVA*IS---------TDAATQD--DTYLVVC*ESGRLDI 240
S ++CTLY KGP+PWL+KTS+ A +S TD A QD D Y VVC ++G L+I
Sbjct: 584 SVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAAQDHGDIYCVVCFDNGNLEI 643
Query: 239 LRFQALHVSFIVDTY 195
+ F V+T+
Sbjct: 644 FDVPNFNCVFSVETF 658
>XP_014512849.1 PREDICTED: cleavage and polyadenylation specificity factor subunit
1 isoform X2 [Vigna radiata var. radiata]
Length = 1444
Score = 55.5 bits (132), Expect = 7e-06
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 11/75 (14%)
Frame = -1
Query: 386 STTACTLYLAKGPKPWLQKTSSVA*IS---------TDAATQD--DTYLVVC*ESGRLDI 240
S ++CTLY KGP+PWL+KTS+ A +S TD A QD D Y VVC ++G L+I
Sbjct: 724 SVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAAQDHGDIYCVVCFDNGNLEI 783
Query: 239 LRFQALHVSFIVDTY 195
+ F V+T+
Sbjct: 784 FDVPNFNCVFSVETF 798