BLASTX nr result
ID: Ephedra29_contig00019856
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra29_contig00019856
(373 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
JAT64633.1 General transcription factor IIH subunit 4 [Anthurium... 69 4e-11
JAT40123.1 General transcription factor IIH subunit 4 [Anthurium... 69 5e-11
XP_010940421.1 PREDICTED: RNA polymerase II transcription factor... 64 1e-09
XP_010940418.1 PREDICTED: RNA polymerase II transcription factor... 64 1e-09
XP_010940415.1 PREDICTED: RNA polymerase II transcription factor... 64 1e-09
XP_008778436.1 PREDICTED: RNA polymerase II transcription factor... 63 3e-09
XP_009392829.1 PREDICTED: RNA polymerase II transcription factor... 63 4e-09
XP_008778431.1 PREDICTED: RNA polymerase II transcription factor... 63 4e-09
KMZ72824.1 General transcription factor IIH subunit [Zostera mar... 62 1e-08
XP_012702092.1 PREDICTED: general transcription factor IIH subun... 61 2e-08
XP_004972571.1 PREDICTED: general transcription factor IIH subun... 61 2e-08
XP_002447335.1 hypothetical protein SORBIDRAFT_06g033130 [Sorghu... 61 2e-08
XP_020113269.1 RNA polymerase II transcription factor B subunit ... 60 6e-08
OAY83764.1 General transcription factor IIH subunit 4 [Ananas co... 60 6e-08
XP_020113268.1 RNA polymerase II transcription factor B subunit ... 60 6e-08
XP_020113267.1 RNA polymerase II transcription factor B subunit ... 60 6e-08
EEE61913.1 hypothetical protein OsJ_16644 [Oryza sativa Japonica... 59 1e-07
XP_006653885.1 PREDICTED: RNA polymerase II transcription factor... 59 1e-07
XP_015633748.1 PREDICTED: general transcription factor IIH subun... 59 1e-07
EEC78260.1 hypothetical protein OsI_17944 [Oryza sativa Indica G... 59 1e-07
>JAT64633.1 General transcription factor IIH subunit 4 [Anthurium amnicola]
Length = 402
Score = 68.6 bits (166), Expect = 4e-11
Identities = 32/61 (52%), Positives = 39/61 (63%)
Frame = +1
Query: 1 DKNRVQMTPSYMYNDFXXXXXXXXXXXXXIDIGGLLWEDSKKRLVIVRSESHAEMRDFIK 180
D+NRV M PS++Y DF +IGG LWEDSKK +IVR ESH +MRDF+K
Sbjct: 339 DRNRVDMLPSHLYQDFPTKEMFEAACDFAREIGGFLWEDSKKMRLIVRGESHQDMRDFLK 398
Query: 181 R 183
R
Sbjct: 399 R 399
>JAT40123.1 General transcription factor IIH subunit 4 [Anthurium amnicola]
JAT54784.1 General transcription factor IIH subunit 4
[Anthurium amnicola]
Length = 452
Score = 68.6 bits (166), Expect = 5e-11
Identities = 32/61 (52%), Positives = 39/61 (63%)
Frame = +1
Query: 1 DKNRVQMTPSYMYNDFXXXXXXXXXXXXXIDIGGLLWEDSKKRLVIVRSESHAEMRDFIK 180
D+NRV M PS++Y DF +IGG LWEDSKK +IVR ESH +MRDF+K
Sbjct: 389 DRNRVDMLPSHLYQDFPTKEMFEAACDFAREIGGFLWEDSKKMRLIVRGESHQDMRDFLK 448
Query: 181 R 183
R
Sbjct: 449 R 449
>XP_010940421.1 PREDICTED: RNA polymerase II transcription factor B subunit 2
isoform X3 [Elaeis guineensis]
Length = 390
Score = 64.3 bits (155), Expect = 1e-09
Identities = 29/60 (48%), Positives = 38/60 (63%)
Frame = +1
Query: 1 DKNRVQMTPSYMYNDFXXXXXXXXXXXXXIDIGGLLWEDSKKRLVIVRSESHAEMRDFIK 180
D+NRV+M PS++Y DF +IGGLLWEDSKK ++VR E H MRDF++
Sbjct: 328 DRNRVEMIPSHLYEDFPSKDIFEAVCDFAREIGGLLWEDSKKMRLVVRGEYHQHMRDFLR 387
>XP_010940418.1 PREDICTED: RNA polymerase II transcription factor B subunit 2
isoform X2 [Elaeis guineensis] XP_010940419.1 PREDICTED:
RNA polymerase II transcription factor B subunit 2
isoform X2 [Elaeis guineensis]
Length = 403
Score = 64.3 bits (155), Expect = 1e-09
Identities = 29/60 (48%), Positives = 38/60 (63%)
Frame = +1
Query: 1 DKNRVQMTPSYMYNDFXXXXXXXXXXXXXIDIGGLLWEDSKKRLVIVRSESHAEMRDFIK 180
D+NRV+M PS++Y DF +IGGLLWEDSKK ++VR E H MRDF++
Sbjct: 341 DRNRVEMIPSHLYEDFPSKDIFEAVCDFAREIGGLLWEDSKKMRLVVRGEYHQHMRDFLR 400
>XP_010940415.1 PREDICTED: RNA polymerase II transcription factor B subunit 2
isoform X1 [Elaeis guineensis] XP_010940416.1 PREDICTED:
RNA polymerase II transcription factor B subunit 2
isoform X1 [Elaeis guineensis]
Length = 451
Score = 64.3 bits (155), Expect = 1e-09
Identities = 29/60 (48%), Positives = 38/60 (63%)
Frame = +1
Query: 1 DKNRVQMTPSYMYNDFXXXXXXXXXXXXXIDIGGLLWEDSKKRLVIVRSESHAEMRDFIK 180
D+NRV+M PS++Y DF +IGGLLWEDSKK ++VR E H MRDF++
Sbjct: 389 DRNRVEMIPSHLYEDFPSKDIFEAVCDFAREIGGLLWEDSKKMRLVVRGEYHQHMRDFLR 448
>XP_008778436.1 PREDICTED: RNA polymerase II transcription factor B subunit 2
isoform X2 [Phoenix dactylifera]
Length = 401
Score = 63.2 bits (152), Expect = 3e-09
Identities = 29/60 (48%), Positives = 38/60 (63%)
Frame = +1
Query: 1 DKNRVQMTPSYMYNDFXXXXXXXXXXXXXIDIGGLLWEDSKKRLVIVRSESHAEMRDFIK 180
D+NRV++ PS++Y DF +IGGLLWEDSKK +IVR E H MRDF++
Sbjct: 339 DRNRVEIIPSHLYEDFPSKEIFEAVCDFAREIGGLLWEDSKKMRLIVRGEYHQHMRDFLR 398
>XP_009392829.1 PREDICTED: RNA polymerase II transcription factor B subunit 2
isoform X4 [Musa acuminata subsp. malaccensis]
Length = 451
Score = 63.2 bits (152), Expect = 4e-09
Identities = 29/61 (47%), Positives = 40/61 (65%)
Frame = +1
Query: 1 DKNRVQMTPSYMYNDFXXXXXXXXXXXXXIDIGGLLWEDSKKRLVIVRSESHAEMRDFIK 180
DKNRV++TPSY+Y DF ++GGLL+EDS+ ++VR E H EMRDF++
Sbjct: 389 DKNRVEITPSYLYEDFPSKEVFEAACDFARELGGLLFEDSRTMRLVVRVEVHQEMRDFLR 448
Query: 181 R 183
R
Sbjct: 449 R 449
>XP_008778431.1 PREDICTED: RNA polymerase II transcription factor B subunit 2
isoform X1 [Phoenix dactylifera]
Length = 451
Score = 63.2 bits (152), Expect = 4e-09
Identities = 29/60 (48%), Positives = 38/60 (63%)
Frame = +1
Query: 1 DKNRVQMTPSYMYNDFXXXXXXXXXXXXXIDIGGLLWEDSKKRLVIVRSESHAEMRDFIK 180
D+NRV++ PS++Y DF +IGGLLWEDSKK +IVR E H MRDF++
Sbjct: 389 DRNRVEIIPSHLYEDFPSKEIFEAVCDFAREIGGLLWEDSKKMRLIVRGEYHQHMRDFLR 448
>KMZ72824.1 General transcription factor IIH subunit [Zostera marina]
Length = 451
Score = 61.6 bits (148), Expect = 1e-08
Identities = 27/61 (44%), Positives = 38/61 (62%)
Frame = +1
Query: 1 DKNRVQMTPSYMYNDFXXXXXXXXXXXXXIDIGGLLWEDSKKRLVIVRSESHAEMRDFIK 180
D+NRV+MT S++Y DF ++GGLLW DSKK IV ++H +MRDF++
Sbjct: 389 DRNRVEMTHSHLYEDFPSRDVFEAACDYARELGGLLWRDSKKMFFIVNGDAHQDMRDFLR 448
Query: 181 R 183
R
Sbjct: 449 R 449
>XP_012702092.1 PREDICTED: general transcription factor IIH subunit 4 isoform X2
[Setaria italica]
Length = 427
Score = 61.2 bits (147), Expect = 2e-08
Identities = 29/61 (47%), Positives = 38/61 (62%)
Frame = +1
Query: 1 DKNRVQMTPSYMYNDFXXXXXXXXXXXXXIDIGGLLWEDSKKRLVIVRSESHAEMRDFIK 180
D+NRV+M PS++Y DF D G LLWEDSK+ +IVR E H EMR+F++
Sbjct: 365 DRNRVEMIPSHLYEDFPSKEWFEQCCDHARDHGYLLWEDSKRMRLIVRGEFHPEMREFLR 424
Query: 181 R 183
R
Sbjct: 425 R 425
>XP_004972571.1 PREDICTED: general transcription factor IIH subunit 4 isoform X1
[Setaria italica] KQL00382.1 hypothetical protein
SETIT_013723mg [Setaria italica]
Length = 451
Score = 61.2 bits (147), Expect = 2e-08
Identities = 29/61 (47%), Positives = 38/61 (62%)
Frame = +1
Query: 1 DKNRVQMTPSYMYNDFXXXXXXXXXXXXXIDIGGLLWEDSKKRLVIVRSESHAEMRDFIK 180
D+NRV+M PS++Y DF D G LLWEDSK+ +IVR E H EMR+F++
Sbjct: 389 DRNRVEMIPSHLYEDFPSKEWFEQCCDHARDHGYLLWEDSKRMRLIVRGEFHPEMREFLR 448
Query: 181 R 183
R
Sbjct: 449 R 449
>XP_002447335.1 hypothetical protein SORBIDRAFT_06g033130 [Sorghum bicolor]
EES11663.1 hypothetical protein SORBI_006G269800
[Sorghum bicolor]
Length = 451
Score = 61.2 bits (147), Expect = 2e-08
Identities = 29/61 (47%), Positives = 38/61 (62%)
Frame = +1
Query: 1 DKNRVQMTPSYMYNDFXXXXXXXXXXXXXIDIGGLLWEDSKKRLVIVRSESHAEMRDFIK 180
D+NRV+M PS++Y DF D G LLWEDSK+ +IVR E H EMR+F++
Sbjct: 389 DRNRVEMIPSHLYEDFPSKEWFEQCCDYARDNGYLLWEDSKRMRLIVRGEFHPEMREFLR 448
Query: 181 R 183
R
Sbjct: 449 R 449
>XP_020113269.1 RNA polymerase II transcription factor B subunit 2 isoform X3
[Ananas comosus]
Length = 379
Score = 59.7 bits (143), Expect = 6e-08
Identities = 28/61 (45%), Positives = 37/61 (60%)
Frame = +1
Query: 1 DKNRVQMTPSYMYNDFXXXXXXXXXXXXXIDIGGLLWEDSKKRLVIVRSESHAEMRDFIK 180
D+NRV+M PS++Y DF + LLWEDSKK +IVR E H +MRDF++
Sbjct: 316 DRNRVEMIPSHLYEDFPSKDLFEACCDFAREYNCLLWEDSKKMRLIVRGEFHQQMRDFLR 375
Query: 181 R 183
R
Sbjct: 376 R 376
>OAY83764.1 General transcription factor IIH subunit 4 [Ananas comosus]
Length = 418
Score = 59.7 bits (143), Expect = 6e-08
Identities = 28/61 (45%), Positives = 37/61 (60%)
Frame = +1
Query: 1 DKNRVQMTPSYMYNDFXXXXXXXXXXXXXIDIGGLLWEDSKKRLVIVRSESHAEMRDFIK 180
D+NRV+M PS++Y DF + LLWEDSKK +IVR E H +MRDF++
Sbjct: 355 DRNRVEMIPSHLYEDFPSKDLFEACCDFAREYNCLLWEDSKKMRLIVRGEFHQQMRDFLR 414
Query: 181 R 183
R
Sbjct: 415 R 415
>XP_020113268.1 RNA polymerase II transcription factor B subunit 2 isoform X2
[Ananas comosus]
Length = 429
Score = 59.7 bits (143), Expect = 6e-08
Identities = 28/61 (45%), Positives = 37/61 (60%)
Frame = +1
Query: 1 DKNRVQMTPSYMYNDFXXXXXXXXXXXXXIDIGGLLWEDSKKRLVIVRSESHAEMRDFIK 180
D+NRV+M PS++Y DF + LLWEDSKK +IVR E H +MRDF++
Sbjct: 366 DRNRVEMIPSHLYEDFPSKDLFEACCDFAREYNCLLWEDSKKMRLIVRGEFHQQMRDFLR 425
Query: 181 R 183
R
Sbjct: 426 R 426
>XP_020113267.1 RNA polymerase II transcription factor B subunit 2 isoform X1
[Ananas comosus]
Length = 452
Score = 59.7 bits (143), Expect = 6e-08
Identities = 28/61 (45%), Positives = 37/61 (60%)
Frame = +1
Query: 1 DKNRVQMTPSYMYNDFXXXXXXXXXXXXXIDIGGLLWEDSKKRLVIVRSESHAEMRDFIK 180
D+NRV+M PS++Y DF + LLWEDSKK +IVR E H +MRDF++
Sbjct: 389 DRNRVEMIPSHLYEDFPSKDLFEACCDFAREYNCLLWEDSKKMRLIVRGEFHQQMRDFLR 448
Query: 181 R 183
R
Sbjct: 449 R 449
>EEE61913.1 hypothetical protein OsJ_16644 [Oryza sativa Japonica Group]
Length = 427
Score = 58.9 bits (141), Expect = 1e-07
Identities = 29/61 (47%), Positives = 38/61 (62%)
Frame = +1
Query: 1 DKNRVQMTPSYMYNDFXXXXXXXXXXXXXIDIGGLLWEDSKKRLVIVRSESHAEMRDFIK 180
D+NRV MT S++Y DF D G LLWED+KK +IVR E H+EMR+F++
Sbjct: 365 DRNRVDMTLSHLYEDFPSKDMFDQCCDYARDHGCLLWEDAKKMRLIVRVEFHSEMREFLR 424
Query: 181 R 183
R
Sbjct: 425 R 425
>XP_006653885.1 PREDICTED: RNA polymerase II transcription factor B subunit 2
[Oryza brachyantha]
Length = 451
Score = 58.9 bits (141), Expect = 1e-07
Identities = 29/61 (47%), Positives = 38/61 (62%)
Frame = +1
Query: 1 DKNRVQMTPSYMYNDFXXXXXXXXXXXXXIDIGGLLWEDSKKRLVIVRSESHAEMRDFIK 180
D+NRV+MT S++Y DF D G LLWED+KK +IVR E H EMR+F++
Sbjct: 389 DRNRVEMTLSHLYEDFPSKDMFEQCCDYARDHGCLLWEDAKKMRLIVRVEFHPEMREFLR 448
Query: 181 R 183
R
Sbjct: 449 R 449
>XP_015633748.1 PREDICTED: general transcription factor IIH subunit 4 [Oryza sativa
Japonica Group] CAE05735.1 OSJNBb0017I01.15 [Oryza
sativa Japonica Group] BAS91663.1 Os04g0680000 [Oryza
sativa Japonica Group]
Length = 451
Score = 58.9 bits (141), Expect = 1e-07
Identities = 29/61 (47%), Positives = 38/61 (62%)
Frame = +1
Query: 1 DKNRVQMTPSYMYNDFXXXXXXXXXXXXXIDIGGLLWEDSKKRLVIVRSESHAEMRDFIK 180
D+NRV MT S++Y DF D G LLWED+KK +IVR E H+EMR+F++
Sbjct: 389 DRNRVDMTLSHLYEDFPSKDMFDQCCDYARDHGCLLWEDAKKMRLIVRVEFHSEMREFLR 448
Query: 181 R 183
R
Sbjct: 449 R 449
>EEC78260.1 hypothetical protein OsI_17944 [Oryza sativa Indica Group]
Length = 459
Score = 58.9 bits (141), Expect = 1e-07
Identities = 29/61 (47%), Positives = 38/61 (62%)
Frame = +1
Query: 1 DKNRVQMTPSYMYNDFXXXXXXXXXXXXXIDIGGLLWEDSKKRLVIVRSESHAEMRDFIK 180
D+NRV MT S++Y DF D G LLWED+KK +IVR E H+EMR+F++
Sbjct: 397 DRNRVDMTLSHLYEDFPSKDMFDQCCDYARDHGCLLWEDAKKMRLIVRVEFHSEMREFLR 456
Query: 181 R 183
R
Sbjct: 457 R 457