BLASTX nr result

ID: Ephedra29_contig00019688 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra29_contig00019688
         (685 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_011625875.1 PREDICTED: glycine-rich RNA-binding protein 3, mi...    81   5e-16
XP_012070705.1 PREDICTED: glycine-rich RNA-binding protein 2 [Ja...    82   3e-15
XP_006657815.1 PREDICTED: glycine-rich RNA-binding protein 4, mi...    77   1e-14
XP_013625756.1 PREDICTED: ELAV-like protein 2 [Brassica oleracea...    77   2e-14
XP_012434427.1 PREDICTED: glycine-rich RNA-binding protein 4, mi...    77   3e-14
XP_020096302.1 glycine-rich RNA-binding protein 2, mitochondrial...    77   3e-14
XP_003573359.1 PREDICTED: glycine-rich RNA-binding protein 4, mi...    77   3e-14
XP_006659102.1 PREDICTED: glycine-rich RNA-binding protein 4, mi...    76   5e-14
XP_006281245.1 hypothetical protein CARUB_v10027288mg [Capsella ...    77   5e-14
ACN41115.1 unknown [Picea sitchensis]                                  76   6e-14
XP_018465666.1 PREDICTED: glycine-rich RNA-binding protein 4, mi...    76   6e-14
XP_007021155.2 PREDICTED: glycine-rich RNA-binding protein 4, mi...    76   7e-14
XP_010448336.1 PREDICTED: glycine-rich RNA-binding protein 4, mi...    76   7e-14
EOY12680.1 RNA-binding family protein [Theobroma cacao]                76   7e-14
JAU11641.1 Putative DEAD-box ATP-dependent RNA helicase 33 [Nocc...    76   7e-14
XP_016738166.1 PREDICTED: glycine-rich RNA-binding protein 4, mi...    76   7e-14
XP_017627847.1 PREDICTED: glycine-rich RNA-binding protein 4, mi...    76   7e-14
XP_011624062.1 PREDICTED: glycine-rich RNA-binding protein 3, mi...    75   8e-14
XP_013733631.1 PREDICTED: glycine-rich RNA-binding protein 4, mi...    76   9e-14
CDY42466.1 BnaA10g08420D [Brassica napus]                              76   9e-14

>XP_011625875.1 PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial
           isoform X2 [Amborella trichopoda]
          Length = 130

 Score = 81.3 bits (199), Expect = 5e-16
 Identities = 46/115 (40%), Positives = 66/115 (57%), Gaps = 4/115 (3%)
 Frame = -3

Query: 584 IRAEMGFNVGSLKSIVQTRFLKLPPSPQDIPPTVE----LFVSGLDRNKSSKDLRNMFAQ 417
           +RA +G  V  L S   + F+  PPSP   PP  E    LFVSGL +  +++ LR  F++
Sbjct: 3   LRARLGIEVRRLYSSYASSFVP-PPSPTPPPPPAEPSTNLFVSGLSKRTTTEGLREAFSK 61

Query: 416 FGELLEASIVTNTQTGRPRGVGFVXXXXXXXXXXXXXAMDGKFLDGRVIFADYSK 252
           FG+++ A +VT+  +G  +G GFV              MDGKFLDG VIFA+Y++
Sbjct: 62  FGQVVHARVVTDRVSGYSKGFGFVKYATQEEAAEGIAGMDGKFLDGWVIFAEYAR 116


>XP_012070705.1 PREDICTED: glycine-rich RNA-binding protein 2 [Jatropha curcas]
           KDP39011.1 hypothetical protein JCGZ_00768 [Jatropha
           curcas]
          Length = 277

 Score = 82.4 bits (202), Expect = 3e-15
 Identities = 40/105 (38%), Positives = 62/105 (59%)
 Frame = -3

Query: 566 FNVGSLKSIVQTRFLKLPPSPQDIPPTVELFVSGLDRNKSSKDLRNMFAQFGELLEASIV 387
           F+  S  S +  +  + P + +  PP  +LFVSGL++  +++ L+  F+QFGE++ A +V
Sbjct: 21  FSTSSFSSFIPPQTKETPSARETAPPNCQLFVSGLNKRTTTEKLKESFSQFGEVVHAKVV 80

Query: 386 TNTQTGRPRGVGFVXXXXXXXXXXXXXAMDGKFLDGRVIFADYSK 252
           T+  +G  +G GFV              MDGKFLDG VIFA+YS+
Sbjct: 81  TDRVSGYSKGFGFVRYATIEDAAKAIQGMDGKFLDGWVIFAEYSR 125


>XP_006657815.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like
           [Oryza brachyantha]
          Length = 130

 Score = 77.4 bits (189), Expect = 1e-14
 Identities = 41/96 (42%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
 Frame = -3

Query: 515 PPSPQDIPPTVE----LFVSGLDRNKSSKDLRNMFAQFGELLEASIVTNTQTGRPRGVGF 348
           PP P    P  E    LFVSGL++  +S+ LR  F++FG+++EA ++T+  +G  RG GF
Sbjct: 21  PPPPPAARPAAEPCNNLFVSGLNKRTTSEGLREAFSKFGQVIEARVITDRISGYSRGFGF 80

Query: 347 VXXXXXXXXXXXXXAMDGKFLDGRVIFADYSKYENT 240
           V              MDGKFLDG VIFA+Y+K   T
Sbjct: 81  VKYATVIEAGEGIKGMDGKFLDGWVIFAEYAKQRET 116


>XP_013625756.1 PREDICTED: ELAV-like protein 2 [Brassica oleracea var. oleracea]
           XP_013640715.1 PREDICTED: ELAV-like protein 2 [Brassica
           napus]
          Length = 153

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 39/87 (44%), Positives = 52/87 (59%)
 Frame = -3

Query: 512 PSPQDIPPTVELFVSGLDRNKSSKDLRNMFAQFGELLEASIVTNTQTGRPRGVGFVXXXX 333
           P+     PT  LFVSGL +  +S+ LR  FAQFGE+ +A +VT+  +G  +G GFV    
Sbjct: 47  PARPQADPTTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYAT 106

Query: 332 XXXXXXXXXAMDGKFLDGRVIFADYSK 252
                     MDGKFLDG VIFA+Y++
Sbjct: 107 LEDSAKGIAGMDGKFLDGWVIFAEYAR 133


>XP_012434427.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial
           [Gossypium raimondii] XP_016716679.1 PREDICTED:
           glycine-rich RNA-binding protein 4, mitochondrial-like
           [Gossypium hirsutum] KJB45626.1 hypothetical protein
           B456_007G316900 [Gossypium raimondii]
          Length = 157

 Score = 77.4 bits (189), Expect = 3e-14
 Identities = 37/87 (42%), Positives = 53/87 (60%)
 Frame = -3

Query: 512 PSPQDIPPTVELFVSGLDRNKSSKDLRNMFAQFGELLEASIVTNTQTGRPRGVGFVXXXX 333
           P  +  PP+  LFVSGL++   S+ LR  F+QFG +++A +VT+  +G  +G GFV    
Sbjct: 47  PGREQAPPSTNLFVSGLNKRTQSEKLREAFSQFGRVIDARVVTDRVSGYSKGFGFVRYAT 106

Query: 332 XXXXXXXXXAMDGKFLDGRVIFADYSK 252
                     MDGKFLDG VIFA+Y++
Sbjct: 107 VEEAEKGRVGMDGKFLDGWVIFAEYAR 133


>XP_020096302.1 glycine-rich RNA-binding protein 2, mitochondrial-like [Ananas
           comosus] OAY82106.1 Glycine-rich RNA-binding protein 3,
           mitochondrial [Ananas comosus]
          Length = 131

 Score = 76.6 bits (187), Expect = 3e-14
 Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 4/92 (4%)
 Frame = -3

Query: 515 PPSPQDIPPTVE----LFVSGLDRNKSSKDLRNMFAQFGELLEASIVTNTQTGRPRGVGF 348
           PP P    P VE    LFVSGL++  +S+ LR  FA+FG++++A ++T+  +G  RG GF
Sbjct: 21  PPPPAAARPAVEPSTNLFVSGLNKRTTSETLRETFAKFGQIVDARVITDRVSGYSRGFGF 80

Query: 347 VXXXXXXXXXXXXXAMDGKFLDGRVIFADYSK 252
           V              MDGKFLDG VIFA+Y++
Sbjct: 81  VRYASIEEAEAGIKGMDGKFLDGWVIFAEYAR 112


>XP_003573359.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial
           [Brachypodium distachyon] KQJ95009.1 hypothetical
           protein BRADI_3g14640 [Brachypodium distachyon]
          Length = 153

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 41/92 (44%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
 Frame = -3

Query: 515 PPSPQDIPPTVE----LFVSGLDRNKSSKDLRNMFAQFGELLEASIVTNTQTGRPRGVGF 348
           PPSP   PP  +    LFVSGL +  ++  LR  FA+FGE++ A +VT+  TG  +G GF
Sbjct: 34  PPSPPTPPPKADPSPNLFVSGLSKRTTTDGLREAFAKFGEVMHARVVTDRVTGFSKGFGF 93

Query: 347 VXXXXXXXXXXXXXAMDGKFLDGRVIFADYSK 252
           V              MDGKFLDG VIFA+Y++
Sbjct: 94  VRYASVEDASKGIEGMDGKFLDGWVIFAEYAR 125


>XP_006659102.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like
           [Oryza brachyantha]
          Length = 141

 Score = 76.3 bits (186), Expect = 5e-14
 Identities = 41/92 (44%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
 Frame = -3

Query: 515 PPSPQDIPPTVE----LFVSGLDRNKSSKDLRNMFAQFGELLEASIVTNTQTGRPRGVGF 348
           PP P   PP  +    LFVSGL +  ++  LR  FA+FGE+L A +VT+  TG  +G GF
Sbjct: 22  PPKPPTPPPKADPSPNLFVSGLSKRTTTDGLREAFAKFGEVLHARVVTDRVTGFSKGFGF 81

Query: 347 VXXXXXXXXXXXXXAMDGKFLDGRVIFADYSK 252
           V              MDGKFLDG VIFA+Y++
Sbjct: 82  VRYATVEDAAKGIEGMDGKFLDGWVIFAEYAR 113


>XP_006281245.1 hypothetical protein CARUB_v10027288mg [Capsella rubella]
           EOA14143.1 hypothetical protein CARUB_v10027288mg
           [Capsella rubella]
          Length = 156

 Score = 76.6 bits (187), Expect = 5e-14
 Identities = 49/124 (39%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
 Frame = -3

Query: 620 DVMISSLGLSRYIRAEMG-FNVGSLKSIVQTRFLKLPPSPQDIPPTVELFVSGLDRNKSS 444
           +V ++ +GL R   +    F+  S ++  QT     P  PQ  P T  LFVSGL +  +S
Sbjct: 16  EVALAPVGLRRLFCSNASRFSFLSPQAETQT-----PARPQAEPST-NLFVSGLSKRTTS 69

Query: 443 KDLRNMFAQFGELLEASIVTNTQTGRPRGVGFVXXXXXXXXXXXXXAMDGKFLDGRVIFA 264
           + LR  FAQFGE+ +A +VT+  +G  +G GFV              MDGKFLDG VIFA
Sbjct: 70  EGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYTTLEDSAKGIAGMDGKFLDGWVIFA 129

Query: 263 DYSK 252
           +Y++
Sbjct: 130 EYAR 133


>ACN41115.1 unknown [Picea sitchensis]
          Length = 149

 Score = 76.3 bits (186), Expect = 6e-14
 Identities = 38/79 (48%), Positives = 51/79 (64%)
 Frame = -3

Query: 488 TVELFVSGLDRNKSSKDLRNMFAQFGELLEASIVTNTQTGRPRGVGFVXXXXXXXXXXXX 309
           T +LF+SGL R  + + LR  F++FG+L+EA +VT+  +GR RG GFV            
Sbjct: 43  TTKLFISGLSRQTTDEGLRAKFSEFGQLVEARVVTDRISGRSRGFGFVRYATLEDAAKGK 102

Query: 308 XAMDGKFLDGRVIFADYSK 252
             MDGKFLDG VIFAD++K
Sbjct: 103 EGMDGKFLDGWVIFADFAK 121


>XP_018465666.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like
           [Raphanus sativus]
          Length = 152

 Score = 76.3 bits (186), Expect = 6e-14
 Identities = 38/87 (43%), Positives = 52/87 (59%)
 Frame = -3

Query: 512 PSPQDIPPTVELFVSGLDRNKSSKDLRNMFAQFGELLEASIVTNTQTGRPRGVGFVXXXX 333
           P+     P+  LFVSGL +  +S+ LR  FAQFGE+ +A +VT+  +G  +G GFV    
Sbjct: 43  PARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEIADAKVVTDRVSGYSKGFGFVRYTT 102

Query: 332 XXXXXXXXXAMDGKFLDGRVIFADYSK 252
                     MDGKFLDG VIFA+Y++
Sbjct: 103 LEDSAKGIAGMDGKFLDGWVIFAEYAR 129


>XP_007021155.2 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial
           [Theobroma cacao]
          Length = 156

 Score = 76.3 bits (186), Expect = 7e-14
 Identities = 36/87 (41%), Positives = 54/87 (62%)
 Frame = -3

Query: 512 PSPQDIPPTVELFVSGLDRNKSSKDLRNMFAQFGELLEASIVTNTQTGRPRGVGFVXXXX 333
           P  +  PP+  LFVSGL++  + + LR  F+QFG++++A +VT+  +G  +G GFV    
Sbjct: 47  PGREQAPPSTNLFVSGLNKRTTMEKLREAFSQFGQVVDARVVTDRVSGYSKGFGFVRYAT 106

Query: 332 XXXXXXXXXAMDGKFLDGRVIFADYSK 252
                     MDGKFLDG VIFA+Y++
Sbjct: 107 LEEAEKGREGMDGKFLDGWVIFAEYAR 133


>XP_010448336.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial
           [Camelina sativa]
          Length = 156

 Score = 76.3 bits (186), Expect = 7e-14
 Identities = 38/87 (43%), Positives = 52/87 (59%)
 Frame = -3

Query: 512 PSPQDIPPTVELFVSGLDRNKSSKDLRNMFAQFGELLEASIVTNTQTGRPRGVGFVXXXX 333
           P+     P+  LFVSGL +  +S+ LR  FAQFGE+ +A +VT+  +G  +G GFV    
Sbjct: 47  PARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEIADAKVVTDRVSGYSKGFGFVRYTT 106

Query: 332 XXXXXXXXXAMDGKFLDGRVIFADYSK 252
                     MDGKFLDG VIFA+Y++
Sbjct: 107 LEDSAKGIAGMDGKFLDGWVIFAEYAR 133


>EOY12680.1 RNA-binding family protein [Theobroma cacao]
          Length = 156

 Score = 76.3 bits (186), Expect = 7e-14
 Identities = 36/87 (41%), Positives = 54/87 (62%)
 Frame = -3

Query: 512 PSPQDIPPTVELFVSGLDRNKSSKDLRNMFAQFGELLEASIVTNTQTGRPRGVGFVXXXX 333
           P  +  PP+  LFVSGL++  + + LR  F+QFG++++A +VT+  +G  +G GFV    
Sbjct: 47  PGREQAPPSTNLFVSGLNKRTTMEKLREAFSQFGQVVDARVVTDRVSGYSKGFGFVRYAT 106

Query: 332 XXXXXXXXXAMDGKFLDGRVIFADYSK 252
                     MDGKFLDG VIFA+Y++
Sbjct: 107 LEEAEKGREGMDGKFLDGWVIFAEYAR 133


>JAU11641.1 Putative DEAD-box ATP-dependent RNA helicase 33 [Noccaea
           caerulescens] JAU41202.1 Putative DEAD-box ATP-dependent
           RNA helicase 33 [Noccaea caerulescens] JAU68243.1
           Putative DEAD-box ATP-dependent RNA helicase 33 [Noccaea
           caerulescens] JAU77947.1 Putative DEAD-box ATP-dependent
           RNA helicase 33 [Noccaea caerulescens]
          Length = 157

 Score = 76.3 bits (186), Expect = 7e-14
 Identities = 39/94 (41%), Positives = 53/94 (56%)
 Frame = -3

Query: 512 PSPQDIPPTVELFVSGLDRNKSSKDLRNMFAQFGELLEASIVTNTQTGRPRGVGFVXXXX 333
           P+     P+  LFVSGL +  +S+ LR  FAQFGE+ +A +VT+  +G  +G GFV    
Sbjct: 47  PARPQADPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYAT 106

Query: 332 XXXXXXXXXAMDGKFLDGRVIFADYSKYENTDST 231
                     MDGKFLDG VIFA+Y++      T
Sbjct: 107 LEDSAKGIAGMDGKFLDGWVIFAEYARPREPSQT 140


>XP_016738166.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like
           [Gossypium hirsutum]
          Length = 157

 Score = 76.3 bits (186), Expect = 7e-14
 Identities = 36/87 (41%), Positives = 54/87 (62%)
 Frame = -3

Query: 512 PSPQDIPPTVELFVSGLDRNKSSKDLRNMFAQFGELLEASIVTNTQTGRPRGVGFVXXXX 333
           P  +  PP+  LFVSGL++  +S+ LR  F+QFG +++A +VT+  +G  +G GFV    
Sbjct: 47  PGREQAPPSTNLFVSGLNKRTNSEKLREAFSQFGRVIDARVVTDRVSGYSKGFGFVRYAT 106

Query: 332 XXXXXXXXXAMDGKFLDGRVIFADYSK 252
                     MDGKFL+G VIFA+Y++
Sbjct: 107 IEEAEKGRVGMDGKFLEGWVIFAEYAR 133


>XP_017627847.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial
           [Gossypium arboreum] KHG12372.1 Glycine-rich RNA-binding
           2, mitochondrial -like protein [Gossypium arboreum]
          Length = 157

 Score = 76.3 bits (186), Expect = 7e-14
 Identities = 36/87 (41%), Positives = 54/87 (62%)
 Frame = -3

Query: 512 PSPQDIPPTVELFVSGLDRNKSSKDLRNMFAQFGELLEASIVTNTQTGRPRGVGFVXXXX 333
           P  +  PP+  LFVSGL++  +S+ LR  F+QFG +++A +VT+  +G  +G GFV    
Sbjct: 47  PGREQAPPSTNLFVSGLNKRTNSEKLREAFSQFGRVIDARVVTDRVSGYSKGFGFVRYAT 106

Query: 332 XXXXXXXXXAMDGKFLDGRVIFADYSK 252
                     MDGKFL+G VIFA+Y++
Sbjct: 107 IEEAEKGRVGMDGKFLEGWVIFAEYAR 133


>XP_011624062.1 PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like
           [Amborella trichopoda]
          Length = 132

 Score = 75.5 bits (184), Expect = 8e-14
 Identities = 38/88 (43%), Positives = 56/88 (63%)
 Frame = -3

Query: 515 PPSPQDIPPTVELFVSGLDRNKSSKDLRNMFAQFGELLEASIVTNTQTGRPRGVGFVXXX 336
           PP+P  +P T  LFVSGL++  +S+ LR  F +FGE+++A +VT+  +G  +G GFV   
Sbjct: 31  PPNPPAVPST-SLFVSGLNKRTTSEKLREAFLKFGEVVQARVVTDRVSGYSKGFGFVRYA 89

Query: 335 XXXXXXXXXXAMDGKFLDGRVIFADYSK 252
                      MDG+FLDG VIFA+Y++
Sbjct: 90  TLEEAEAGIKGMDGQFLDGWVIFAEYAR 117


>XP_013733631.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like
           [Brassica napus]
          Length = 153

 Score = 75.9 bits (185), Expect = 9e-14
 Identities = 38/87 (43%), Positives = 52/87 (59%)
 Frame = -3

Query: 512 PSPQDIPPTVELFVSGLDRNKSSKDLRNMFAQFGELLEASIVTNTQTGRPRGVGFVXXXX 333
           P+     P+  LFVSGL +  +S+ LR  FAQFGE+ +A +VT+  +G  +G GFV    
Sbjct: 47  PARPQADPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYAT 106

Query: 332 XXXXXXXXXAMDGKFLDGRVIFADYSK 252
                     MDGKFLDG VIFA+Y++
Sbjct: 107 LEDSAKGIAGMDGKFLDGWVIFAEYAR 133


>CDY42466.1 BnaA10g08420D [Brassica napus]
          Length = 153

 Score = 75.9 bits (185), Expect = 9e-14
 Identities = 38/87 (43%), Positives = 52/87 (59%)
 Frame = -3

Query: 512 PSPQDIPPTVELFVSGLDRNKSSKDLRNMFAQFGELLEASIVTNTQTGRPRGVGFVXXXX 333
           P+     P+  LFVSGL +  +S+ LR  FAQFGE+ +A +VT+  +G  +G GFV    
Sbjct: 47  PARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYTT 106

Query: 332 XXXXXXXXXAMDGKFLDGRVIFADYSK 252
                     MDGKFLDG VIFA+Y++
Sbjct: 107 LEDSAKGIAGMDGKFLDGWVIFAEYAR 133


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