BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra29_contig00019665
         (424 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_007226664.1 hypothetical protein PRUPE_ppa021611mg [Prunus pe...    59   1e-07
ONI28805.1 hypothetical protein PRUPE_1G162600, partial [Prunus ...    59   1e-07
XP_019196468.1 PREDICTED: pentatricopeptide repeat-containing pr...    58   5e-07
XP_017224834.1 PREDICTED: putative pentatricopeptide repeat-cont...    58   5e-07
OMO57535.1 hypothetical protein COLO4_35303 [Corchorus olitorius]      57   6e-07
CDY22282.1 BnaC02g25860D [Brassica napus]                              57   9e-07
XP_013725920.1 PREDICTED: pentatricopeptide repeat-containing pr...    57   9e-07
XP_009128367.1 PREDICTED: pentatricopeptide repeat-containing pr...    57   9e-07
XP_013676859.1 PREDICTED: pentatricopeptide repeat-containing pr...    57   9e-07
XP_013621413.1 PREDICTED: pentatricopeptide repeat-containing pr...    57   9e-07
CDY25343.1 BnaC01g30120D [Brassica napus]                              57   9e-07
ONK74770.1 uncharacterized protein A4U43_C03F9970 [Asparagus off...    57   1e-06
XP_018483925.1 PREDICTED: pentatricopeptide repeat-containing pr...    57   1e-06
XP_010520205.1 PREDICTED: pentatricopeptide repeat-containing pr...    56   2e-06
XP_002973723.1 hypothetical protein SELMODRAFT_99426 [Selaginell...    55   3e-06
XP_011016979.1 PREDICTED: pentatricopeptide repeat-containing pr...    55   3e-06
XP_002302359.2 hypothetical protein POPTR_0002s11020g [Populus t...    55   3e-06
XP_004486474.1 PREDICTED: pentatricopeptide repeat-containing pr...    55   3e-06
5I9H_A Chain A, Crystal Structure Of Designed Pentatricopeptide ...    55   4e-06
XP_006390560.1 hypothetical protein EUTSA_v10018347mg [Eutrema s...    55   4e-06

>XP_007226664.1 hypothetical protein PRUPE_ppa021611mg [Prunus persica]
          Length = 368

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 29/103 (28%), Positives = 58/103 (56%)
 Frame = +2

Query: 116 ITYLCNKSKLNEASECLKRALLCPSTTTPPSLDTCNLVVETLARADRADQAYHLCNLMVK 295
           I  LC+  +  EA++ L + +       PP++ T N+V++ L +  R ++A  +  LM +
Sbjct: 145 INGLCHSGQWREATKLLNKMM---GEGIPPNVVTLNIVIKYLCKCRRTNEALTVLELMTE 201

Query: 296 ARIKPDFMLCSCIIHCLAHQGFVEDAHKLFEEMHAFGYVPDTL 424
             +KP+ +  +C+I+ + H+    +A +LF+EM   G +PD +
Sbjct: 202 GGLKPNLVTYNCLIYSMCHRAQSGEATRLFDEMVGRGILPDAI 244


>ONI28805.1 hypothetical protein PRUPE_1G162600, partial [Prunus persica]
          Length = 468

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 29/103 (28%), Positives = 58/103 (56%)
 Frame = +2

Query: 116 ITYLCNKSKLNEASECLKRALLCPSTTTPPSLDTCNLVVETLARADRADQAYHLCNLMVK 295
           I  LC+  +  EA++ L + +       PP++ T N+V++ L +  R ++A  +  LM +
Sbjct: 245 INGLCHSGQWREATKLLNKMM---GEGIPPNVVTLNIVIKYLCKCRRTNEALTVLELMTE 301

Query: 296 ARIKPDFMLCSCIIHCLAHQGFVEDAHKLFEEMHAFGYVPDTL 424
             +KP+ +  +C+I+ + H+    +A +LF+EM   G +PD +
Sbjct: 302 GGLKPNLVTYNCLIYSMCHRAQSGEATRLFDEMVGRGILPDAI 344


>XP_019196468.1 PREDICTED: pentatricopeptide repeat-containing protein At3g16010
           [Ipomoea nil] XP_019196469.1 PREDICTED:
           pentatricopeptide repeat-containing protein At3g16010
           [Ipomoea nil] XP_019196470.1 PREDICTED:
           pentatricopeptide repeat-containing protein At3g16010
           [Ipomoea nil]
          Length = 638

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 28/75 (37%), Positives = 47/75 (62%)
 Frame = +2

Query: 200 PPSLDTCNLVVETLARADRADQAYHLCNLMVKARIKPDFMLCSCIIHCLAHQGFVEDAHK 379
           PP++ T   +++ L RA R ++AY +   ++K   KPD +L + +++ LA  G V+DAHK
Sbjct: 297 PPTVYTYTELIKGLGRAGRTEEAYSIFLNILKDGCKPDVVLLNNVMNILARAGRVDDAHK 356

Query: 380 LFEEMHAFGYVPDTL 424
           LFEEM +    P+ +
Sbjct: 357 LFEEMESLNCTPNVV 371


>XP_017224834.1 PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial [Daucus carota subsp. sativus]
          Length = 942

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 34/110 (30%), Positives = 55/110 (50%)
 Frame = +2

Query: 89  TFTSSIDEKITYLCNKSKLNEASECLKRALLCPSTTTPPSLDTCNLVVETLARADRADQA 268
           T T + +  I   C K K++ A   L+     P     P+++T N +++ L R  R D+A
Sbjct: 629 TNTRTYNILINGYCKKMKVDTAIHLLEEM---PRAGLTPTVETYNTILDGLFRTRRLDEA 685

Query: 269 YHLCNLMVKARIKPDFMLCSCIIHCLAHQGFVEDAHKLFEEMHAFGYVPD 418
           +     M+K  +K D + C  ++H L   G V +A  LF +M + G VPD
Sbjct: 686 HKFYKKMLKQGLKLDIVTCRTLLHGLCWYGLVVEAMSLFNKMKSCGLVPD 735


>OMO57535.1 hypothetical protein COLO4_35303 [Corchorus olitorius]
          Length = 459

 Score = 57.4 bits (137), Expect = 6e-07
 Identities = 35/103 (33%), Positives = 56/103 (54%)
 Frame = +2

Query: 116 ITYLCNKSKLNEASECLKRALLCPSTTTPPSLDTCNLVVETLARADRADQAYHLCNLMVK 295
           +T LC   K++ A E L +  LC    +P SL T N V++ LA+  + DQA  L + M  
Sbjct: 282 LTALCKDGKVDFAVEILNQ--LCTKGCSP-SLITYNTVIDGLAKVGKTDQAIKLLDEMRA 338

Query: 296 ARIKPDFMLCSCIIHCLAHQGFVEDAHKLFEEMHAFGYVPDTL 424
             +KPD +  S ++  L  +G V+DA K F++  + G  P+ +
Sbjct: 339 KGLKPDIITYSSLVGGLIREGKVDDAIKFFQDFESMGIRPNAM 381


>CDY22282.1 BnaC02g25860D [Brassica napus]
          Length = 759

 Score = 57.0 bits (136), Expect = 9e-07
 Identities = 27/68 (39%), Positives = 41/68 (60%)
 Frame = +2

Query: 218 CNLVVETLARADRADQAYHLCNLMVKARIKPDFMLCSCIIHCLAHQGFVEDAHKLFEEMH 397
           C+ +++ L R  R D+ + L  +M+K  IKPD +LC+ +I  L+  G +EDA KL   M 
Sbjct: 301 CSSLIDGLFRGGRYDEGFELYEIMLKKNIKPDVVLCTILIQGLSKAGKIEDALKLLSSMP 360

Query: 398 AFGYVPDT 421
           + G  PDT
Sbjct: 361 SQGIPPDT 368


>XP_013725920.1 PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like isoform X1 [Brassica napus]
           XP_013725921.1 PREDICTED: pentatricopeptide
           repeat-containing protein At1g79540-like isoform X2
           [Brassica napus]
          Length = 773

 Score = 57.0 bits (136), Expect = 9e-07
 Identities = 27/68 (39%), Positives = 41/68 (60%)
 Frame = +2

Query: 218 CNLVVETLARADRADQAYHLCNLMVKARIKPDFMLCSCIIHCLAHQGFVEDAHKLFEEMH 397
           C+ +++ L R  R D+ + L  +M+K  IKPD +LC+ +I  L+  G +EDA KL   M 
Sbjct: 298 CSSLIDGLFRGGRYDEGFELYEIMLKKNIKPDVVLCTILIQGLSKAGKIEDALKLLSSMP 357

Query: 398 AFGYVPDT 421
           + G  PDT
Sbjct: 358 SQGIPPDT 365


>XP_009128367.1 PREDICTED: pentatricopeptide repeat-containing protein At1g79540
           [Brassica rapa]
          Length = 773

 Score = 57.0 bits (136), Expect = 9e-07
 Identities = 27/68 (39%), Positives = 41/68 (60%)
 Frame = +2

Query: 218 CNLVVETLARADRADQAYHLCNLMVKARIKPDFMLCSCIIHCLAHQGFVEDAHKLFEEMH 397
           C+ +++ L R  R D+ + L  +M+K  IKPD +LC+ +I  L+  G +EDA KL   M 
Sbjct: 298 CSSLIDGLFRGGRYDEGFELYEIMLKKNIKPDVVLCTILIQGLSKAGKIEDALKLLSSMP 357

Query: 398 AFGYVPDT 421
           + G  PDT
Sbjct: 358 SQGIPPDT 365


>XP_013676859.1 PREDICTED: pentatricopeptide repeat-containing protein At1g79540
           isoform X1 [Brassica napus] XP_013676860.1 PREDICTED:
           pentatricopeptide repeat-containing protein At1g79540
           isoform X2 [Brassica napus]
          Length = 776

 Score = 57.0 bits (136), Expect = 9e-07
 Identities = 27/68 (39%), Positives = 41/68 (60%)
 Frame = +2

Query: 218 CNLVVETLARADRADQAYHLCNLMVKARIKPDFMLCSCIIHCLAHQGFVEDAHKLFEEMH 397
           C+ +++ L R  R D+ + L  +M+K  IKPD +LC+ +I  L+  G +EDA KL   M 
Sbjct: 301 CSSLIDGLFRGGRYDEGFELYEIMLKKNIKPDVVLCTILIQGLSKAGKIEDALKLLSSMP 360

Query: 398 AFGYVPDT 421
           + G  PDT
Sbjct: 361 SQGIPPDT 368


>XP_013621413.1 PREDICTED: pentatricopeptide repeat-containing protein At1g79540
           [Brassica oleracea var. oleracea]
          Length = 776

 Score = 57.0 bits (136), Expect = 9e-07
 Identities = 27/68 (39%), Positives = 41/68 (60%)
 Frame = +2

Query: 218 CNLVVETLARADRADQAYHLCNLMVKARIKPDFMLCSCIIHCLAHQGFVEDAHKLFEEMH 397
           C+ +++ L R  R D+ + L  +M+K  IKPD +LC+ +I  L+  G +EDA KL   M 
Sbjct: 301 CSSLIDGLFRGGRYDEGFELYEIMLKKNIKPDVVLCTILIQRLSKAGKIEDALKLLSSMP 360

Query: 398 AFGYVPDT 421
           + G  PDT
Sbjct: 361 SQGIPPDT 368


>CDY25343.1 BnaC01g30120D [Brassica napus]
          Length = 789

 Score = 57.0 bits (136), Expect = 9e-07
 Identities = 27/68 (39%), Positives = 41/68 (60%)
 Frame = +2

Query: 218 CNLVVETLARADRADQAYHLCNLMVKARIKPDFMLCSCIIHCLAHQGFVEDAHKLFEEMH 397
           C+ +++ L R  R D+ + L  +M+K  IKPD +LC+ +I  L+  G +EDA KL   M 
Sbjct: 298 CSSLIDGLFRGGRYDEGFELYEIMLKKNIKPDVVLCTILIQGLSKAGKIEDALKLLSSMP 357

Query: 398 AFGYVPDT 421
           + G  PDT
Sbjct: 358 SQGIPPDT 365


>ONK74770.1 uncharacterized protein A4U43_C03F9970 [Asparagus officinalis]
          Length = 573

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 5/141 (3%)
 Frame = +2

Query: 11  PKLEFFTTMSLLRHYPLKKLPFAYFCT-----FTSSIDEKITYLCNKSKLNEASECLKRA 175
           PK   F+  S    +PL KLP     +     F SS    I    N +  + A   L  +
Sbjct: 41  PKAAMFSRTSTT--FPLAKLPSPSLSSRSLSSFPSSTASLILSHLNSNDTSAAISTLLSS 98

Query: 176 LLCPSTTTPPSLDTCNLVVETLARADRADQAYHLCNLMVKARIKPDFMLCSCIIHCLAHQ 355
           L  PS+T+PP     N +  +L++  +   A  L N ++  +I PD +  + +++C    
Sbjct: 99  L--PSSTSPPPPSLLNPIFSSLSKTHQFQSAISLYNSLLHHKITPDLISANIVLNCYCQA 156

Query: 356 GFVEDAHKLFEEMHAFGYVPD 418
             ++ A KLF+EM  +G  PD
Sbjct: 157 HQIDHAQKLFDEMPQWGLSPD 177


>XP_018483925.1 PREDICTED: pentatricopeptide repeat-containing protein At5g40400
           [Raphanus sativus]
          Length = 619

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 31/97 (31%), Positives = 50/97 (51%)
 Frame = +2

Query: 128 CNKSKLNEASECLKRALLCPSTTTPPSLDTCNLVVETLARADRADQAYHLCNLMVKARIK 307
           CN S  N+ +E L++  +       P L T N +V +  R  R  +A++L  +M + R+ 
Sbjct: 262 CNGSSFNQVNEFLEK--MEEEEGFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMYRRRVV 319

Query: 308 PDFMLCSCIIHCLAHQGFVEDAHKLFEEMHAFGYVPD 418
           PD +  +C+I  L  +G V +AH+ F  M   G  PD
Sbjct: 320 PDLVTYTCLIKGLCKEGRVREAHQTFHRMVDRGIKPD 356


>XP_010520205.1 PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial [Tarenaya hassleriana]
          Length = 590

 Score = 56.2 bits (134), Expect = 2e-06
 Identities = 33/110 (30%), Positives = 51/110 (46%)
 Frame = +2

Query: 89  TFTSSIDEKITYLCNKSKLNEASECLKRALLCPSTTTPPSLDTCNLVVETLARADRADQA 268
           T+ ++ID      C   K+NEA E     +   ST + P+  T  +++  LAR DR ++ 
Sbjct: 327 TYNAAIDA----FCKVGKVNEAVELFDFMITKGSTVSAPTAKTFAVMIAALARYDRMEEC 382

Query: 269 YHLCNLMVKARIKPDFMLCSCIIHCLAHQGFVEDAHKLFEEMHAFGYVPD 418
           + L   M+     PD      +I  +   G  E+A+K   EM   GY PD
Sbjct: 383 FELIGRMISIGCLPDVSTYKEVIEGICMSGKTEEAYKFLHEMRNKGYPPD 432


>XP_002973723.1 hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
           EFJ25383.1 hypothetical protein SELMODRAFT_99426
           [Selaginella moellendorffii]
          Length = 581

 Score = 55.5 bits (132), Expect = 3e-06
 Identities = 32/100 (32%), Positives = 49/100 (49%)
 Frame = +2

Query: 125 LCNKSKLNEASECLKRALLCPSTTTPPSLDTCNLVVETLARADRADQAYHLCNLMVKARI 304
           L  KS ++EA E  K+ +    +   P+  T ++V+    R     +   L   M + R 
Sbjct: 232 LARKSNMDEAEEMFKKMV---DSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRF 288

Query: 305 KPDFMLCSCIIHCLAHQGFVEDAHKLFEEMHAFGYVPDTL 424
            PD +LC+ +I  L     V+DAHK+ EEM   G VPD +
Sbjct: 289 SPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVV 328


>XP_011016979.1 PREDICTED: pentatricopeptide repeat-containing protein At1g09900
           [Populus euphratica]
          Length = 591

 Score = 55.5 bits (132), Expect = 3e-06
 Identities = 34/101 (33%), Positives = 53/101 (52%)
 Frame = +2

Query: 116 ITYLCNKSKLNEASECLKRALLCPSTTTPPSLDTCNLVVETLARADRADQAYHLCNLMVK 295
           +T LC   K++ A E L +     S    P L T N V++ L++  + DQA  L + M  
Sbjct: 414 LTALCKDGKVDAAVELLNQL---SSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRG 470

Query: 296 ARIKPDFMLCSCIIHCLAHQGFVEDAHKLFEEMHAFGYVPD 418
             +KPD +  S +I  L+ +G VE+A K F ++  FG  P+
Sbjct: 471 KGLKPDVITYSSLIAGLSREGKVEEALKFFHDVEGFGVKPN 511


>XP_002302359.2 hypothetical protein POPTR_0002s11020g [Populus trichocarpa]
           EEE81632.2 hypothetical protein POPTR_0002s11020g
           [Populus trichocarpa]
          Length = 637

 Score = 55.5 bits (132), Expect = 3e-06
 Identities = 34/101 (33%), Positives = 53/101 (52%)
 Frame = +2

Query: 116 ITYLCNKSKLNEASECLKRALLCPSTTTPPSLDTCNLVVETLARADRADQAYHLCNLMVK 295
           +T LC   K++ A E L +     S    P L T N V++ L++  + DQA  L + M  
Sbjct: 460 LTALCKDGKVDAAVELLNQL---SSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRG 516

Query: 296 ARIKPDFMLCSCIIHCLAHQGFVEDAHKLFEEMHAFGYVPD 418
             +KPD +  S +I  L+ +G VE+A K F ++  FG  P+
Sbjct: 517 KGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPN 557


>XP_004486474.1 PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial [Cicer arietinum]
          Length = 664

 Score = 55.5 bits (132), Expect = 3e-06
 Identities = 25/75 (33%), Positives = 41/75 (54%)
 Frame = +2

Query: 200 PPSLDTCNLVVETLARADRADQAYHLCNLMVKARIKPDFMLCSCIIHCLAHQGFVEDAHK 379
           PP + T N+++ +  RA R D A  +   +  +   PD +  +C+I+CL   G V++AH 
Sbjct: 488 PPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCTPDVISYNCLINCLGKNGDVDEAHM 547

Query: 380 LFEEMHAFGYVPDTL 424
            F+EM   G  PD +
Sbjct: 548 RFKEMQEKGLNPDVV 562


>5I9H_A Chain A, Crystal Structure Of Designed Pentatricopeptide Repeat
           Protein Dppr- U8g2 In Complex With Its Target Rna U8g2
          Length = 460

 Score = 55.1 bits (131), Expect = 4e-06
 Identities = 37/112 (33%), Positives = 58/112 (51%)
 Frame = +2

Query: 89  TFTSSIDEKITYLCNKSKLNEASECLKRALLCPSTTTPPSLDTCNLVVETLARADRADQA 268
           T+T+ ID     LC   KL+EA +  +  +        P + T N +++ L +A + D+A
Sbjct: 228 TYTTLIDG----LCKAGKLDEALKLFEEMV---EKGIKPDVVTYNTLIDGLCKAGKLDEA 280

Query: 269 YHLCNLMVKARIKPDFMLCSCIIHCLAHQGFVEDAHKLFEEMHAFGYVPDTL 424
             L   MV+  IKPD +  + +I  L   G +++A KLFEEM   G  PD +
Sbjct: 281 LKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVV 332


>XP_006390560.1 hypothetical protein EUTSA_v10018347mg [Eutrema salsugineum]
           ESQ27846.1 hypothetical protein EUTSA_v10018347mg
           [Eutrema salsugineum]
          Length = 567

 Score = 55.1 bits (131), Expect = 4e-06
 Identities = 31/110 (28%), Positives = 55/110 (50%)
 Frame = +2

Query: 89  TFTSSIDEKITYLCNKSKLNEASECLKRALLCPSTTTPPSLDTCNLVVETLARADRADQA 268
           T+ ++ID      C    +++A+E  +  +   ST + P+  T  L++  LAR D++++ 
Sbjct: 304 TYCAAIDA----FCQAGMVDDAAELFEFMMTKGSTVSAPTAKTFALMIVALARNDKSEEC 359

Query: 269 YHLCNLMVKARIKPDFMLCSCIIHCLAHQGFVEDAHKLFEEMHAFGYVPD 418
           + L   M+     PD      +I  +   G VE+A+K  +EM   GY PD
Sbjct: 360 FELIGRMISTGCLPDVSTYKEVIEGMCTAGKVEEAYKFLDEMSNKGYPPD 409