BLASTX nr result
ID: Ephedra29_contig00018765
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra29_contig00018765
(690 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_020101072.1 pentatricopeptide repeat-containing protein At4g1... 63 5e-08
XP_020101071.1 pentatricopeptide repeat-containing protein At4g1... 63 5e-08
5I9G_C Chain C, Crystal Structure Of Designed Pentatricopeptide ... 63 7e-08
5I9H_A Chain A, Crystal Structure Of Designed Pentatricopeptide ... 62 9e-08
5I9F_A Chain A, Crystal Structure Of Designed Pentatricopeptide ... 62 9e-08
5I9D_A Chain A, Crystal Structure Of Designed Pentatricopeptide ... 62 9e-08
OEL14205.1 Pentatricopeptide repeat-containing protein [Dichanth... 59 2e-07
XP_002463367.1 hypothetical protein SORBIDRAFT_02g042500 [Sorghu... 60 4e-07
4OZS_A Chain A, Rna Binding Protein 58 5e-07
XP_004958640.1 PREDICTED: pentatricopeptide repeat-containing pr... 60 6e-07
XP_006293706.1 hypothetical protein CARUB_v10022664mg [Capsella ... 60 9e-07
ONK64563.1 uncharacterized protein A4U43_C07F27400 [Asparagus of... 59 1e-06
XP_004306251.2 PREDICTED: pentatricopeptide repeat-containing pr... 59 2e-06
XP_008671860.1 PREDICTED: pentatricopeptide repeat-containing pr... 59 2e-06
ONM26096.1 Pentatricopeptide repeat-containing protein [Zea mays] 59 2e-06
ONM26095.1 Pentatricopeptide repeat-containing protein [Zea mays] 59 2e-06
ONM26097.1 Pentatricopeptide repeat-containing protein [Zea mays] 59 2e-06
XP_008670647.1 PREDICTED: pentatricopeptide repeat-containing pr... 59 2e-06
XP_010683589.1 PREDICTED: pentatricopeptide repeat-containing pr... 58 3e-06
KGN57460.1 hypothetical protein Csa_3G188330 [Cucumis sativus] 58 3e-06
>XP_020101072.1 pentatricopeptide repeat-containing protein At4g11690-like isoform
X2 [Ananas comosus] XP_020101073.1 pentatricopeptide
repeat-containing protein At4g11690-like isoform X2
[Ananas comosus]
Length = 421
Score = 63.2 bits (152), Expect = 5e-08
Identities = 36/87 (41%), Positives = 55/87 (63%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D A KLFDEM ++G + + +T LL GL R R DA++++DK+TK G++P+ + +L
Sbjct: 197 DRAFKLFDEMRESGVSHNVVTYNTLLGGLCREKRTTDALKLFDKMTKEGIRPNLITFNLL 256
Query: 506 INGMWGKL*LNLQANSKLMEMKISDVL 426
I+G +GK +A S L MK+S L
Sbjct: 257 IDG-YGKEGNMSKAMSTLDYMKVSGFL 282
>XP_020101071.1 pentatricopeptide repeat-containing protein At4g11690-like isoform
X1 [Ananas comosus]
Length = 468
Score = 63.2 bits (152), Expect = 5e-08
Identities = 36/87 (41%), Positives = 55/87 (63%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D A KLFDEM ++G + + +T LL GL R R DA++++DK+TK G++P+ + +L
Sbjct: 197 DRAFKLFDEMRESGVSHNVVTYNTLLGGLCREKRTTDALKLFDKMTKEGIRPNLITFNLL 256
Query: 506 INGMWGKL*LNLQANSKLMEMKISDVL 426
I+G +GK +A S L MK+S L
Sbjct: 257 IDG-YGKEGNMSKAMSTLDYMKVSGFL 282
>5I9G_C Chain C, Crystal Structure Of Designed Pentatricopeptide Repeat
Protein Dppr- U8c2 In Complex With Its Target Rna U8c2
Length = 460
Score = 62.8 bits (151), Expect = 7e-08
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 138 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 197
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 198 IDGLCKAGKLDEALKLFEEMVEKGIKPSVVTY 229
Score = 62.4 bits (150), Expect = 9e-08
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 68 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 127
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 128 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 159
Score = 62.4 bits (150), Expect = 9e-08
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 103 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 162
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 163 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 194
Score = 62.4 bits (150), Expect = 9e-08
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 278 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 337
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 338 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 369
Score = 62.0 bits (149), Expect = 1e-07
Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 313 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 372
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I L Y
Sbjct: 373 IDGLCKAGKLDEALKLFEEMVEKGIKPDELTY 404
Score = 60.5 bits (145), Expect = 4e-07
Identities = 31/92 (33%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KP Y L
Sbjct: 173 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPSVVTYNTL 232
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 233 IDGLCKAGKLDEALKLFEEMVEKGIKPSVVTY 264
Score = 60.1 bits (144), Expect = 6e-07
Identities = 31/92 (33%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G P +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 243 DEALKLFEEMVEKGIKPSVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 302
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 303 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 334
Score = 57.8 bits (138), Expect = 3e-06
Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G P +T L+ GL +A + ++A+++++++ + G+KP Y L
Sbjct: 208 DEALKLFEEMVEKGIKPSVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPSVVTYNTL 267
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 268 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 299
Score = 57.8 bits (138), Expect = 3e-06
Identities = 23/61 (37%), Positives = 44/61 (72%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPDE Y+ +
Sbjct: 348 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDELTYRRV 407
Query: 506 I 504
+
Sbjct: 408 V 408
>5I9H_A Chain A, Crystal Structure Of Designed Pentatricopeptide Repeat
Protein Dppr- U8g2 In Complex With Its Target Rna U8g2
Length = 460
Score = 62.4 bits (150), Expect = 9e-08
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 68 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 127
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 128 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 159
Score = 62.4 bits (150), Expect = 9e-08
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 103 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 162
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 163 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 194
Score = 62.4 bits (150), Expect = 9e-08
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 243 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 302
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 303 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 334
Score = 62.4 bits (150), Expect = 9e-08
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 278 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 337
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 338 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 369
Score = 62.0 bits (149), Expect = 1e-07
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 138 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYTTL 197
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 198 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 229
Score = 62.0 bits (149), Expect = 1e-07
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 208 DEALKLFEEMVEKGIKPDVVTYTTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 267
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 268 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 299
Score = 62.0 bits (149), Expect = 1e-07
Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 313 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 372
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I L Y
Sbjct: 373 IDGLCKAGKLDEALKLFEEMVEKGIKPDELTY 404
Score = 61.6 bits (148), Expect = 2e-07
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 173 DEALKLFEEMVEKGIKPDVVTYTTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYTTL 232
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 233 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 264
Score = 57.8 bits (138), Expect = 3e-06
Identities = 23/61 (37%), Positives = 44/61 (72%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPDE Y+ +
Sbjct: 348 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDELTYRRV 407
Query: 506 I 504
+
Sbjct: 408 V 408
>5I9F_A Chain A, Crystal Structure Of Designed Pentatricopeptide Repeat
Protein Dppr- U10 In Complex With Its Target Rna U10
Length = 460
Score = 62.4 bits (150), Expect = 9e-08
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 68 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 127
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 128 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 159
Score = 62.4 bits (150), Expect = 9e-08
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 103 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 162
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 163 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 194
Score = 62.4 bits (150), Expect = 9e-08
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 138 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 197
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 198 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 229
Score = 62.4 bits (150), Expect = 9e-08
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 173 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 232
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 233 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 264
Score = 62.4 bits (150), Expect = 9e-08
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 208 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 267
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 268 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 299
Score = 62.4 bits (150), Expect = 9e-08
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 243 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 302
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 303 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 334
Score = 62.4 bits (150), Expect = 9e-08
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 278 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 337
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 338 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 369
Score = 62.0 bits (149), Expect = 1e-07
Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 313 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 372
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I L Y
Sbjct: 373 IDGLCKAGKLDEALKLFEEMVEKGIKPDELTY 404
Score = 57.8 bits (138), Expect = 3e-06
Identities = 23/61 (37%), Positives = 44/61 (72%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPDE Y+ +
Sbjct: 348 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDELTYRRV 407
Query: 506 I 504
+
Sbjct: 408 V 408
>5I9D_A Chain A, Crystal Structure Of Designed Pentatricopeptide Repeat
Protein Dppr- U8a2 In Complex With Its Target Rna U8a2
Length = 460
Score = 62.4 bits (150), Expect = 9e-08
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 68 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 127
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 128 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 159
Score = 62.4 bits (150), Expect = 9e-08
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 103 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 162
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 163 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 194
Score = 62.4 bits (150), Expect = 9e-08
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 138 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYSTL 197
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 198 IDGLCKAGKLDEALKLFEEMVEKGIKPNVVTY 229
Score = 62.4 bits (150), Expect = 9e-08
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 278 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 337
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 338 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 369
Score = 62.0 bits (149), Expect = 1e-07
Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 313 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 372
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I L Y
Sbjct: 373 IDGLCKAGKLDEALKLFEEMVEKGIKPDELTY 404
Score = 60.5 bits (145), Expect = 4e-07
Identities = 31/92 (33%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KP+ Y L
Sbjct: 173 DEALKLFEEMVEKGIKPDVVTYSTLIDGLCKAGKLDEALKLFEEMVEKGIKPNVVTYSTL 232
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 233 IDGLCKAGKLDEALKLFEEMVEKGIKPNVVTY 264
Score = 60.5 bits (145), Expect = 4e-07
Identities = 31/92 (33%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G P+ +T L+ GL +A + ++A+++++++ + G+KPD Y L
Sbjct: 243 DEALKLFEEMVEKGIKPNVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 302
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 303 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 334
Score = 58.5 bits (140), Expect = 2e-06
Identities = 30/92 (32%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G P+ +T L+ GL +A + ++A+++++++ + G+KP+ Y L
Sbjct: 208 DEALKLFEEMVEKGIKPNVVTYSTLIDGLCKAGKLDEALKLFEEMVEKGIKPNVVTYNTL 267
Query: 506 INGMW--GKL*LNLQANSKLMEMKISDVLLLY 417
I+G+ GKL L+ +++E I ++ Y
Sbjct: 268 IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY 299
Score = 57.8 bits (138), Expect = 3e-06
Identities = 23/61 (37%), Positives = 44/61 (72%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D ALKLF+EM++ G PD +T L+ GL +A + ++A+++++++ + G+KPDE Y+ +
Sbjct: 348 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDELTYRRV 407
Query: 506 I 504
+
Sbjct: 408 V 408
>OEL14205.1 Pentatricopeptide repeat-containing protein [Dichanthelium
oligosanthes]
Length = 148
Score = 58.5 bits (140), Expect = 2e-07
Identities = 25/64 (39%), Positives = 40/64 (62%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D+ALKLF+EM GT P+ + L+ GL + R E+A ++Y+ + + G+ PDE LY L
Sbjct: 72 DVALKLFEEMKQKGTKPNVVAYTALISGLAKEGRSEEAFQLYNHMLEAGLTPDESLYSAL 131
Query: 506 INGM 495
+ +
Sbjct: 132 VGSL 135
>XP_002463367.1 hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
EER99888.1 hypothetical protein SORBI_002G412300
[Sorghum bicolor]
Length = 543
Score = 60.5 bits (145), Expect = 4e-07
Identities = 26/64 (40%), Positives = 40/64 (62%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D+ALKLF+EM GT P+ + L+ GL + R E+A ++YD + K G+ PD+ LY L
Sbjct: 464 DVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYSAL 523
Query: 506 INGM 495
+ +
Sbjct: 524 VGSL 527
>4OZS_A Chain A, Rna Binding Protein
Length = 175
Score = 58.2 bits (139), Expect = 5e-07
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Frame = -2
Query: 680 ALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKILIN 501
AL+LF EM + G PD +T L+ GL +A R E+A++++ ++ + GVKPD Y LI+
Sbjct: 21 ALQLFQEMKEKGVKPDVVTYNTLIDGLAKAGRLEEALQLFQEMKEKGVKPDVVTYNTLID 80
Query: 500 GM--WGKL*LNLQANSKLMEMKISDVLLLY 417
G+ G+L LQ ++ E + ++ Y
Sbjct: 81 GLAKAGRLEEALQLFQEMKEKGVKPDVVTY 110
Score = 58.2 bits (139), Expect = 5e-07
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Frame = -2
Query: 680 ALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKILIN 501
AL+LF EM + G PD +T L+ GL +A R E+A++++ ++ + GVKPD Y LI+
Sbjct: 56 ALQLFQEMKEKGVKPDVVTYNTLIDGLAKAGRLEEALQLFQEMKEKGVKPDVVTYNTLID 115
Query: 500 GM--WGKL*LNLQANSKLMEMKISDVLLLY 417
G+ G+L LQ ++ E + ++ Y
Sbjct: 116 GLAKAGRLEEALQLFQEMKEKGVKPDVVTY 145
Score = 57.0 bits (136), Expect = 1e-06
Identities = 26/62 (41%), Positives = 41/62 (66%)
Frame = -2
Query: 680 ALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKILIN 501
AL+LF EM + G PD +T L+ GL +A R E+A++++ ++ + GVKPD Y LI+
Sbjct: 91 ALQLFQEMKEKGVKPDVVTYNTLIDGLAKAGRLEEALQLFQEMKEKGVKPDVVTYNTLID 150
Query: 500 GM 495
G+
Sbjct: 151 GL 152
>XP_004958640.1 PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Setaria italica]
Length = 550
Score = 60.1 bits (144), Expect = 6e-07
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D+ALKLF+EM GT P+ + VL+ GL + R E A ++YD + K G+ PDE +Y L
Sbjct: 464 DVALKLFEEMKQRGTKPNVVAYTVLISGLAKEGRSEAAFQLYDDMLKAGLIPDESVYSAL 523
Query: 506 INGM 495
+ +
Sbjct: 524 VGSL 527
>XP_006293706.1 hypothetical protein CARUB_v10022664mg [Capsella rubella]
EOA26604.1 hypothetical protein CARUB_v10022664mg
[Capsella rubella]
Length = 794
Score = 59.7 bits (143), Expect = 9e-07
Identities = 27/62 (43%), Positives = 39/62 (62%)
Frame = -2
Query: 680 ALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKILIN 501
AL L DEM NG +PD IT VL+ GL R E+A+ +YD++ G+KPD + ++I
Sbjct: 436 ALDLIDEMRGNGISPDLITYNVLVSGLARNGHEEEALEIYDRMKAEGLKPDAVTHNVIIE 495
Query: 500 GM 495
G+
Sbjct: 496 GL 497
>ONK64563.1 uncharacterized protein A4U43_C07F27400 [Asparagus officinalis]
ONK81912.1 uncharacterized protein A4U43_C01F34200
[Asparagus officinalis]
Length = 1107
Score = 59.3 bits (142), Expect = 1e-06
Identities = 28/64 (43%), Positives = 43/64 (67%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D A+K+FDEM+++G PD IT+ L+ L +A R E+A R++DK+ KM +KP Y L
Sbjct: 520 DEAVKMFDEMMESGCEPDEITVNSLIDTLYKAGREEEAWRMFDKMKKMNLKPTVVTYNTL 579
Query: 506 INGM 495
+ G+
Sbjct: 580 LAGL 583
>XP_004306251.2 PREDICTED: pentatricopeptide repeat-containing protein At2g32630
[Fragaria vesca subsp. vesca]
Length = 616
Score = 58.9 bits (141), Expect = 2e-06
Identities = 24/65 (36%), Positives = 41/65 (63%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D AL LFDEM G + +T +++ GL + R E+A ++YD + K+G+ PD+ +Y L
Sbjct: 542 DAALSLFDEMSQKGLTRNVVTYTIIISGLSKVGRKEEAFKLYDDMKKLGIIPDDRVYHSL 601
Query: 506 INGMW 492
+ G++
Sbjct: 602 VRGLY 606
>XP_008671860.1 PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Zea mays]
Length = 435
Score = 58.5 bits (140), Expect = 2e-06
Identities = 26/64 (40%), Positives = 39/64 (60%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D+ALKLF+EM GT P+ + L+ GL + R E A ++YD + K G+ PD+ LY L
Sbjct: 361 DVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSAL 420
Query: 506 INGM 495
+ +
Sbjct: 421 VGSL 424
>ONM26096.1 Pentatricopeptide repeat-containing protein [Zea mays]
Length = 521
Score = 58.5 bits (140), Expect = 2e-06
Identities = 26/64 (40%), Positives = 39/64 (60%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D+ALKLF+EM GT P+ + L+ GL + R E A ++YD + K G+ PD+ LY L
Sbjct: 447 DVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSAL 506
Query: 506 INGM 495
+ +
Sbjct: 507 VGSL 510
>ONM26095.1 Pentatricopeptide repeat-containing protein [Zea mays]
Length = 537
Score = 58.5 bits (140), Expect = 2e-06
Identities = 26/64 (40%), Positives = 39/64 (60%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D+ALKLF+EM GT P+ + L+ GL + R E A ++YD + K G+ PD+ LY L
Sbjct: 463 DVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSAL 522
Query: 506 INGM 495
+ +
Sbjct: 523 VGSL 526
>ONM26097.1 Pentatricopeptide repeat-containing protein [Zea mays]
Length = 537
Score = 58.5 bits (140), Expect = 2e-06
Identities = 26/64 (40%), Positives = 39/64 (60%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D+ALKLF+EM GT P+ + L+ GL + R E A ++YD + K G+ PD+ LY L
Sbjct: 463 DVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSAL 522
Query: 506 INGM 495
+ +
Sbjct: 523 VGSL 526
>XP_008670647.1 PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Zea mays]
Length = 583
Score = 58.5 bits (140), Expect = 2e-06
Identities = 26/64 (40%), Positives = 39/64 (60%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D+ALKLF+EM GT P+ + L+ GL + R E A ++YD + K G+ PD+ LY L
Sbjct: 509 DVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSAL 568
Query: 506 INGM 495
+ +
Sbjct: 569 VGSL 572
>XP_010683589.1 PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial [Beta vulgaris subsp. vulgaris] KMT06627.1
hypothetical protein BVRB_7g157950 [Beta vulgaris subsp.
vulgaris]
Length = 517
Score = 58.2 bits (139), Expect = 3e-06
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D+AL L +M+ G PD +T VLL GL + R+E+A+ ++ + K G KPD+ + L
Sbjct: 134 DVALSLLQDMMQKGRQPDVVTYTVLLSGLCKVGRYENAVEIWHSMIKNGFKPDDKACRAL 193
Query: 506 INGM--WGKL*LNLQANSKLMEMKISDVLLLY 417
+ G+ GK+ L + +M+ ++ +L+Y
Sbjct: 194 VLGLCGGGKVDLAYELIVDMMKCEVPIGILVY 225
Score = 56.6 bits (135), Expect = 8e-06
Identities = 25/64 (39%), Positives = 41/64 (64%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D+A +F +M++NGTAPD I+ L+ GL +A R +AM + + G+ PDE +K++
Sbjct: 413 DMAQSVFSDMIENGTAPDVISYNALISGLCKASRINEAMSLNTNMQNRGLCPDEVTFKLI 472
Query: 506 INGM 495
I G+
Sbjct: 473 IGGL 476
>KGN57460.1 hypothetical protein Csa_3G188330 [Cucumis sativus]
Length = 529
Score = 58.2 bits (139), Expect = 3e-06
Identities = 28/64 (43%), Positives = 39/64 (60%)
Frame = -2
Query: 686 DIALKLFDEMLDNGTAPDFITLKVLLCGLLRAHRHEDAMRVYDKLTKMGVKPDEHLYKIL 507
D+A +LFDEM G P+ IT L+ G R+ R + AM Y ++ MGVKPD +Y L
Sbjct: 324 DVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTL 383
Query: 506 INGM 495
+NG+
Sbjct: 384 LNGL 387