BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra29_contig00017835
         (566 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_004295757.2 PREDICTED: LOW QUALITY PROTEIN: putative pentatri...    88   7e-17
5I9H_A Chain A, Crystal Structure Of Designed Pentatricopeptide ...    86   3e-16
5I9F_A Chain A, Crystal Structure Of Designed Pentatricopeptide ...    86   3e-16
5I9D_A Chain A, Crystal Structure Of Designed Pentatricopeptide ...    86   3e-16
5I9G_C Chain C, Crystal Structure Of Designed Pentatricopeptide ...    85   5e-16
XP_004305215.1 PREDICTED: pentatricopeptide repeat-containing pr...    85   9e-16
XP_007208068.1 hypothetical protein PRUPE_ppa001736mg [Prunus pe...    84   1e-15
XP_008241362.1 PREDICTED: pentatricopeptide repeat-containing pr...    83   3e-15
JAU64695.1 Pentatricopeptide repeat-containing protein, partial ...    80   4e-15
XP_009374668.1 PREDICTED: pentatricopeptide repeat-containing pr...    82   1e-14
XP_011094832.1 PREDICTED: pentatricopeptide repeat-containing pr...    80   3e-14
XP_015889158.1 PREDICTED: pentatricopeptide repeat-containing pr...    80   3e-14
XP_015889101.1 PREDICTED: pentatricopeptide repeat-containing pr...    80   5e-14
AQK97304.1 Pentatricopeptide repeat-containing protein mitochond...    79   5e-14
XP_008657831.1 PREDICTED: pentatricopeptide repeat-containing pr...    79   5e-14
JAU81433.1 Pentatricopeptide repeat-containing protein, partial ...    79   6e-14
XP_012831987.1 PREDICTED: pentatricopeptide repeat-containing pr...    79   6e-14
JAU50923.1 Pentatricopeptide repeat-containing protein, partial ...    76   6e-14
XP_019085227.1 PREDICTED: pentatricopeptide repeat-containing pr...    79   8e-14
XP_012487249.1 PREDICTED: pentatricopeptide repeat-containing pr...    79   8e-14

>XP_004295757.2 PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial
           [Fragaria vesca subsp. vesca]
          Length = 603

 Score = 87.8 bits (216), Expect = 7e-17
 Identities = 59/191 (30%), Positives = 91/191 (47%), Gaps = 9/191 (4%)
 Frame = +3

Query: 9   HTYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD- 185
           H+ S  V     G++ + A K+F  M  KG   D    +  +    + GR +   K+F  
Sbjct: 367 HSCSILVNGYCKGKKIDQAYKIFKEMPRKGIVPDTITYSSLIDGFCKAGRLQEAEKLFSE 426

Query: 186 ----GCSVEVRDYNYLISGLIRCLQIGSTEEVFARM----LRLDVPLIDVVYARIVIRLL 341
               G   +V+ YN ++ GL    Q+    E+   M    L+LDV    V Y  I+  L 
Sbjct: 427 MPSSGQLADVQTYNIILDGLCNNQQLSEAIELLREMEGNKLKLDV----VAYNIIIEALF 482

Query: 342 DAKEFEFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGA 521
           +A + E  + +F  +SSKGV+ +V   N +++GLCK G      K+F  ME+ GC   G 
Sbjct: 483 NAGKIESAIDVFSGLSSKGVQPDVWTYNIMIRGLCKGGLLVEAEKLFREMEQKGCSPNGC 542

Query: 522 TYKDVIRAFCN 554
           TY  +IR + N
Sbjct: 543 TYNTIIRGYIN 553



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 44/189 (23%), Positives = 81/189 (42%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVF--- 182
           TYS  +  L      + A  LF  M G+G   +    +  ++ +   G ++   ++    
Sbjct: 228 TYSNIIDSLCKDTLVDEAKNLFSEMVGRGIVPNVITYSSLIQGVCNLGHWKEATRLLYEM 287

Query: 183 --DGCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              G    V  +N L+  L +  ++   + V   M++  +    + Y  ++       E 
Sbjct: 288 ANQGIFPNVFTFNILVDALCKEGKVTQAKSVVQIMIQRGIEPDTITYNSLMDGYCLRGEM 347

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           +   ++F  + SKG  ++VH+C+ LV G CK  +     K+F+ M + G      TY  +
Sbjct: 348 DKAKQVFDLIVSKGFSVDVHSCSILVNGYCKGKKIDQAYKIFKEMPRKGIVPDTITYSSL 407

Query: 537 IRAFCNAGR 563
           I  FC AGR
Sbjct: 408 IDGFCKAGR 416



 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 5/165 (3%)
 Frame = +3

Query: 84  MSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-----GCSVEVRDYNYLISGLIRCLQ 248
           M  +G   D    N  +     +G  +   +VFD     G SV+V   + L++G  +  +
Sbjct: 322 MIQRGIEPDTITYNSLMDGYCLRGEMDKAKQVFDLIVSKGFSVDVHSCSILVNGYCKGKK 381

Query: 249 IGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFEFVVKLFGFMSSKGVRLNVHACNE 428
           I    ++F  M R  +    + Y+ ++     A   +   KLF  M S G   +V   N 
Sbjct: 382 IDQAYKIFKEMPRKGIVPDTITYSSLIDGFCKAGRLQEAEKLFSEMPSSGQLADVQTYNI 441

Query: 429 LVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVIRAFCNAGR 563
           ++ GLC N +    +++   ME N        Y  +I A  NAG+
Sbjct: 442 ILDGLCNNQQLSEAIELLREMEGNKLKLDVVAYNIIIEALFNAGK 486


>5I9H_A Chain A, Crystal Structure Of Designed Pentatricopeptide Repeat
           Protein Dppr- U8g2 In Complex With Its Target Rna U8g2
          Length = 460

 Score = 85.9 bits (211), Expect = 3e-16
 Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           TY+  +  L    + + A KLF  M  KG   D    N  +  L + G+ +  +K+F+  
Sbjct: 228 TYTTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEM 287

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              G   +V  YN LI GL +  ++    ++F  M+   +    V Y  ++  L  A + 
Sbjct: 288 VEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKL 347

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           +  +KLF  M  KG++ +V   N L+ GLCK G+    +K+FE M + G      TY+ V
Sbjct: 348 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDELTYRRV 407

Query: 537 IRAFCNAGR 563
           + ++C A R
Sbjct: 408 VESYCRAKR 416



 Score = 82.8 bits (203), Expect = 3e-15
 Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           TY+  +  L    + + A KLF  M  KG   D    N  +  L + G+ +  +K+F+  
Sbjct: 88  TYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEM 147

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              G   +V  YN LI GL +  ++    ++F  M+   +    V Y  ++  L  A + 
Sbjct: 148 VEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYTTLIDGLCKAGKL 207

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           +  +KLF  M  KG++ +V     L+ GLCK G+    +K+FE M + G      TY  +
Sbjct: 208 DEALKLFEEMVEKGIKPDVVTYTTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 267

Query: 537 IRAFCNAGR 563
           I   C AG+
Sbjct: 268 IDGLCKAGK 276



 Score = 82.8 bits (203), Expect = 3e-15
 Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           TY+  +  L    + + A KLF  M  KG   D    N  +  L + G+ +  +K+F+  
Sbjct: 123 TYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEM 182

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              G   +V  Y  LI GL +  ++    ++F  M+   +    V Y  ++  L  A + 
Sbjct: 183 VEKGIKPDVVTYTTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYTTLIDGLCKAGKL 242

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           +  +KLF  M  KG++ +V   N L+ GLCK G+    +K+FE M + G      TY  +
Sbjct: 243 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 302

Query: 537 IRAFCNAGR 563
           I   C AG+
Sbjct: 303 IDGLCKAGK 311



 Score = 81.6 bits (200), Expect = 8e-15
 Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           TY+  +  L    + + A KLF  M  KG   D    N  +  L + G+ +  +K+F+  
Sbjct: 53  TYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEM 112

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              G   +V  YN LI GL +  ++    ++F  M+   +    V Y  ++  L  A + 
Sbjct: 113 VEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKL 172

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           +  +KLF  M  KG++ +V     L+ GLCK G+    +K+FE M + G      TY  +
Sbjct: 173 DEALKLFEEMVEKGIKPDVVTYTTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYTTL 232

Query: 537 IRAFCNAGR 563
           I   C AG+
Sbjct: 233 IDGLCKAGK 241



 Score = 80.5 bits (197), Expect = 2e-14
 Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 5/188 (2%)
 Frame = +3

Query: 15  YSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD--- 185
           Y+  +  L     +E A +LF  +  +G A      N  +  L + G+ +  +K+F+   
Sbjct: 19  YTTVLHALSRAGRYERALELFAELRRQGVAPTVVTYNTLIDGLCKAGKLDEALKLFEEMV 78

Query: 186 --GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFE 359
             G   +V  YN LI GL +  ++    ++F  M+   +    V Y  ++  L  A + +
Sbjct: 79  EKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLD 138

Query: 360 FVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVI 539
             +KLF  M  KG++ +V   N L+ GLCK G+    +K+FE M + G      TY  +I
Sbjct: 139 EALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYTTLI 198

Query: 540 RAFCNAGR 563
              C AG+
Sbjct: 199 DGLCKAGK 206



 Score = 79.7 bits (195), Expect = 4e-14
 Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           TY+  +  L    + + A KLF  M  KG   D       +  L + G+ +  +K+F+  
Sbjct: 158 TYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYTTLIDGLCKAGKLDEALKLFEEM 217

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              G   +V  Y  LI GL +  ++    ++F  M+   +    V Y  ++  L  A + 
Sbjct: 218 VEKGIKPDVVTYTTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKL 277

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           +  +KLF  M  KG++ +V   N L+ GLCK G+    +K+FE M + G      TY  +
Sbjct: 278 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 337

Query: 537 IRAFCNAGR 563
           I   C AG+
Sbjct: 338 IDGLCKAGK 346



 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 40/126 (31%), Positives = 62/126 (49%)
 Frame = +3

Query: 186 GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFEFV 365
           G  ++VR Y  ++  L R  +     E+FA + R  V    V Y  ++  L  A + +  
Sbjct: 11  GSRLDVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTVVTYNTLIDGLCKAGKLDEA 70

Query: 366 VKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVIRA 545
           +KLF  M  KG++ +V   N L+ GLCK G+    +K+FE M + G      TY  +I  
Sbjct: 71  LKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDG 130

Query: 546 FCNAGR 563
            C AG+
Sbjct: 131 LCKAGK 136


>5I9F_A Chain A, Crystal Structure Of Designed Pentatricopeptide Repeat
           Protein Dppr- U10 In Complex With Its Target Rna U10
          Length = 460

 Score = 85.9 bits (211), Expect = 3e-16
 Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           TY+  +  L    + + A KLF  M  KG   D    N  +  L + G+ +  +K+F+  
Sbjct: 228 TYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEM 287

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              G   +V  YN LI GL +  ++    ++F  M+   +    V Y  ++  L  A + 
Sbjct: 288 VEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKL 347

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           +  +KLF  M  KG++ +V   N L+ GLCK G+    +K+FE M + G      TY+ V
Sbjct: 348 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDELTYRRV 407

Query: 537 IRAFCNAGR 563
           + ++C A R
Sbjct: 408 VESYCRAKR 416



 Score = 84.3 bits (207), Expect = 9e-16
 Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           TY+  +  L    + + A KLF  M  KG   D    N  +  L + G+ +  +K+F+  
Sbjct: 53  TYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEM 112

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              G   +V  YN LI GL +  ++    ++F  M+   +    V Y  ++  L  A + 
Sbjct: 113 VEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKL 172

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           +  +KLF  M  KG++ +V   N L+ GLCK G+    +K+FE M + G      TY  +
Sbjct: 173 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 232

Query: 537 IRAFCNAGR 563
           I   C AG+
Sbjct: 233 IDGLCKAGK 241



 Score = 84.3 bits (207), Expect = 9e-16
 Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           TY+  +  L    + + A KLF  M  KG   D    N  +  L + G+ +  +K+F+  
Sbjct: 88  TYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEM 147

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              G   +V  YN LI GL +  ++    ++F  M+   +    V Y  ++  L  A + 
Sbjct: 148 VEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKL 207

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           +  +KLF  M  KG++ +V   N L+ GLCK G+    +K+FE M + G      TY  +
Sbjct: 208 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 267

Query: 537 IRAFCNAGR 563
           I   C AG+
Sbjct: 268 IDGLCKAGK 276



 Score = 84.3 bits (207), Expect = 9e-16
 Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           TY+  +  L    + + A KLF  M  KG   D    N  +  L + G+ +  +K+F+  
Sbjct: 123 TYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEM 182

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              G   +V  YN LI GL +  ++    ++F  M+   +    V Y  ++  L  A + 
Sbjct: 183 VEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKL 242

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           +  +KLF  M  KG++ +V   N L+ GLCK G+    +K+FE M + G      TY  +
Sbjct: 243 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 302

Query: 537 IRAFCNAGR 563
           I   C AG+
Sbjct: 303 IDGLCKAGK 311



 Score = 84.3 bits (207), Expect = 9e-16
 Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           TY+  +  L    + + A KLF  M  KG   D    N  +  L + G+ +  +K+F+  
Sbjct: 158 TYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEM 217

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              G   +V  YN LI GL +  ++    ++F  M+   +    V Y  ++  L  A + 
Sbjct: 218 VEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKL 277

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           +  +KLF  M  KG++ +V   N L+ GLCK G+    +K+FE M + G      TY  +
Sbjct: 278 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 337

Query: 537 IRAFCNAGR 563
           I   C AG+
Sbjct: 338 IDGLCKAGK 346



 Score = 80.9 bits (198), Expect = 2e-14
 Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 5/188 (2%)
 Frame = +3

Query: 15  YSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD--- 185
           Y+  +  L     +E A +LF  +  +G A      N  +  L + G+ +  +K+F+   
Sbjct: 19  YTTVLHALSRAGRYERALELFAELRRQGVAPTVVTYNTLIDGLCKAGKLDEALKLFEEMV 78

Query: 186 --GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFE 359
             G   +V  YN LI GL +  ++    ++F  M+   +    V Y  ++  L  A + +
Sbjct: 79  EKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLD 138

Query: 360 FVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVI 539
             +KLF  M  KG++ +V   N L+ GLCK G+    +K+FE M + G      TY  +I
Sbjct: 139 EALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLI 198

Query: 540 RAFCNAGR 563
              C AG+
Sbjct: 199 DGLCKAGK 206



 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 40/126 (31%), Positives = 62/126 (49%)
 Frame = +3

Query: 186 GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFEFV 365
           G  ++VR Y  ++  L R  +     E+FA + R  V    V Y  ++  L  A + +  
Sbjct: 11  GSRLDVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTVVTYNTLIDGLCKAGKLDEA 70

Query: 366 VKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVIRA 545
           +KLF  M  KG++ +V   N L+ GLCK G+    +K+FE M + G      TY  +I  
Sbjct: 71  LKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDG 130

Query: 546 FCNAGR 563
            C AG+
Sbjct: 131 LCKAGK 136


>5I9D_A Chain A, Crystal Structure Of Designed Pentatricopeptide Repeat
           Protein Dppr- U8a2 In Complex With Its Target Rna U8a2
          Length = 460

 Score = 85.9 bits (211), Expect = 3e-16
 Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           TY+  +  L    + + A KLF  M  KG   D    N  +  L + G+ +  +K+F+  
Sbjct: 88  TYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEM 147

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              G   +V  YN LI GL +  ++    ++F  M+   +    V Y+ ++  L  A + 
Sbjct: 148 VEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYSTLIDGLCKAGKL 207

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           +  +KLF  M  KG++ NV   + L+ GLCK G+    +K+FE M + G      TY  +
Sbjct: 208 DEALKLFEEMVEKGIKPNVVTYSTLIDGLCKAGKLDEALKLFEEMVEKGIKPNVVTYNTL 267

Query: 537 IRAFCNAGR 563
           I   C AG+
Sbjct: 268 IDGLCKAGK 276



 Score = 85.5 bits (210), Expect = 4e-16
 Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           TY+  +  L    + + A KLF  M  KG   D    N  +  L + G+ +  +K+F+  
Sbjct: 123 TYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEM 182

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              G   +V  Y+ LI GL +  ++    ++F  M+   +    V Y+ ++  L  A + 
Sbjct: 183 VEKGIKPDVVTYSTLIDGLCKAGKLDEALKLFEEMVEKGIKPNVVTYSTLIDGLCKAGKL 242

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           +  +KLF  M  KG++ NV   N L+ GLCK G+    +K+FE M + G      TY  +
Sbjct: 243 DEALKLFEEMVEKGIKPNVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 302

Query: 537 IRAFCNAGR 563
           I   C AG+
Sbjct: 303 IDGLCKAGK 311



 Score = 85.1 bits (209), Expect = 5e-16
 Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           TYS  +  L    + + A KLF  M  KG   +    N  +  L + G+ +  +K+F+  
Sbjct: 228 TYSTLIDGLCKAGKLDEALKLFEEMVEKGIKPNVVTYNTLIDGLCKAGKLDEALKLFEEM 287

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              G   +V  YN LI GL +  ++    ++F  M+   +    V Y  ++  L  A + 
Sbjct: 288 VEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKL 347

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           +  +KLF  M  KG++ +V   N L+ GLCK G+    +K+FE M + G      TY+ V
Sbjct: 348 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDELTYRRV 407

Query: 537 IRAFCNAGR 563
           + ++C A R
Sbjct: 408 VESYCRAKR 416



 Score = 82.8 bits (203), Expect = 3e-15
 Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           TY+  +  L    + + A KLF  M  KG   D    N  +  L + G+ +  +K+F+  
Sbjct: 53  TYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEM 112

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              G   +V  YN LI GL +  ++    ++F  M+   +    V Y  ++  L  A + 
Sbjct: 113 VEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKL 172

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           +  +KLF  M  KG++ +V   + L+ GLCK G+    +K+FE M + G      TY  +
Sbjct: 173 DEALKLFEEMVEKGIKPDVVTYSTLIDGLCKAGKLDEALKLFEEMVEKGIKPNVVTYSTL 232

Query: 537 IRAFCNAGR 563
           I   C AG+
Sbjct: 233 IDGLCKAGK 241



 Score = 80.9 bits (198), Expect = 2e-14
 Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 5/188 (2%)
 Frame = +3

Query: 15  YSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD--- 185
           Y+  +  L     +E A +LF  +  +G A      N  +  L + G+ +  +K+F+   
Sbjct: 19  YTTVLHALSRAGRYERALELFAELRRQGVAPTVVTYNTLIDGLCKAGKLDEALKLFEEMV 78

Query: 186 --GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFE 359
             G   +V  YN LI GL +  ++    ++F  M+   +    V Y  ++  L  A + +
Sbjct: 79  EKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLD 138

Query: 360 FVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVI 539
             +KLF  M  KG++ +V   N L+ GLCK G+    +K+FE M + G      TY  +I
Sbjct: 139 EALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYSTLI 198

Query: 540 RAFCNAGR 563
              C AG+
Sbjct: 199 DGLCKAGK 206



 Score = 79.7 bits (195), Expect = 4e-14
 Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           TY+  +  L    + + A KLF  M  KG   D    +  +  L + G+ +  +K+F+  
Sbjct: 158 TYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYSTLIDGLCKAGKLDEALKLFEEM 217

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              G    V  Y+ LI GL +  ++    ++F  M+   +    V Y  ++  L  A + 
Sbjct: 218 VEKGIKPNVVTYSTLIDGLCKAGKLDEALKLFEEMVEKGIKPNVVTYNTLIDGLCKAGKL 277

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           +  +KLF  M  KG++ +V   N L+ GLCK G+    +K+FE M + G      TY  +
Sbjct: 278 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 337

Query: 537 IRAFCNAGR 563
           I   C AG+
Sbjct: 338 IDGLCKAGK 346



 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 40/126 (31%), Positives = 62/126 (49%)
 Frame = +3

Query: 186 GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFEFV 365
           G  ++VR Y  ++  L R  +     E+FA + R  V    V Y  ++  L  A + +  
Sbjct: 11  GSRLDVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTVVTYNTLIDGLCKAGKLDEA 70

Query: 366 VKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVIRA 545
           +KLF  M  KG++ +V   N L+ GLCK G+    +K+FE M + G      TY  +I  
Sbjct: 71  LKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDG 130

Query: 546 FCNAGR 563
            C AG+
Sbjct: 131 LCKAGK 136


>5I9G_C Chain C, Crystal Structure Of Designed Pentatricopeptide Repeat
           Protein Dppr- U8c2 In Complex With Its Target Rna U8c2
          Length = 460

 Score = 85.1 bits (209), Expect = 5e-16
 Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           TY+  +  L    + + A KLF  M  KG   D    N  +  L + G+ +  +K+F+  
Sbjct: 53  TYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEM 112

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              G   +V  YN LI GL +  ++    ++F  M+   +    V Y  ++  L  A + 
Sbjct: 113 VEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKL 172

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           +  +KLF  M  KG++ +V   N L+ GLCK G+    +K+FE M + G   +  TY  +
Sbjct: 173 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPSVVTYNTL 232

Query: 537 IRAFCNAGR 563
           I   C AG+
Sbjct: 233 IDGLCKAGK 241



 Score = 85.1 bits (209), Expect = 5e-16
 Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           TY+  +  L    + + A KLF  M  KG   D    N  +  L + G+ +  +K+F+  
Sbjct: 88  TYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEM 147

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              G   +V  YN LI GL +  ++    ++F  M+   +    V Y  ++  L  A + 
Sbjct: 148 VEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKL 207

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           +  +KLF  M  KG++ +V   N L+ GLCK G+    +K+FE M + G   +  TY  +
Sbjct: 208 DEALKLFEEMVEKGIKPSVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPSVVTYNTL 267

Query: 537 IRAFCNAGR 563
           I   C AG+
Sbjct: 268 IDGLCKAGK 276



 Score = 84.7 bits (208), Expect = 7e-16
 Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           TY+  +  L    + + A KLF  M  KG   D    N  +  L + G+ +  +K+F+  
Sbjct: 123 TYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEM 182

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              G   +V  YN LI GL +  ++    ++F  M+   +    V Y  ++  L  A + 
Sbjct: 183 VEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPSVVTYNTLIDGLCKAGKL 242

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           +  +KLF  M  KG++ +V   N L+ GLCK G+    +K+FE M + G      TY  +
Sbjct: 243 DEALKLFEEMVEKGIKPSVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 302

Query: 537 IRAFCNAGR 563
           I   C AG+
Sbjct: 303 IDGLCKAGK 311



 Score = 84.0 bits (206), Expect = 1e-15
 Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           TY+  +  L    + + A KLF  M  KG   D    N  +  L + G+ +  +K+F+  
Sbjct: 158 TYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEM 217

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              G    V  YN LI GL +  ++    ++F  M+   +    V Y  ++  L  A + 
Sbjct: 218 VEKGIKPSVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPSVVTYNTLIDGLCKAGKL 277

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           +  +KLF  M  KG++ +V   N L+ GLCK G+    +K+FE M + G      TY  +
Sbjct: 278 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL 337

Query: 537 IRAFCNAGR 563
           I   C AG+
Sbjct: 338 IDGLCKAGK 346



 Score = 83.6 bits (205), Expect = 2e-15
 Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           TY+  +  L    + + A KLF  M  KG        N  +  L + G+ +  +K+F+  
Sbjct: 228 TYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPSVVTYNTLIDGLCKAGKLDEALKLFEEM 287

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              G   +V  YN LI GL +  ++    ++F  M+   +    V Y  ++  L  A + 
Sbjct: 288 VEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKL 347

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           +  +KLF  M  KG++ +V   N L+ GLCK G+    +K+FE M + G      TY+ V
Sbjct: 348 DEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDELTYRRV 407

Query: 537 IRAFCNAGR 563
           + ++C A R
Sbjct: 408 VESYCRAKR 416



 Score = 78.2 bits (191), Expect = 1e-13
 Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 5/161 (3%)
 Frame = +3

Query: 96  GYALDAYARNMFVKCLSEKGRFEIVMKVF-----DGCSVEVRDYNYLISGLIRCLQIGST 260
           G  LD  A    +  LS  GR+E  +++F      G +  V  YN LI GL +  ++   
Sbjct: 11  GSRLDVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTVVTYNTLIDGLCKAGKLDEA 70

Query: 261 EEVFARMLRLDVPLIDVVYARIVIRLLDAKEFEFVVKLFGFMSSKGVRLNVHACNELVKG 440
            ++F  M+   +    V Y  ++  L  A + +  +KLF  M  KG++ +V   N L+ G
Sbjct: 71  LKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDG 130

Query: 441 LCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVIRAFCNAGR 563
           LCK G+    +K+FE M + G      TY  +I   C AG+
Sbjct: 131 LCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGK 171


>XP_004305215.1 PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Fragaria vesca subsp. vesca]
          Length = 761

 Score = 84.7 bits (208), Expect = 9e-16
 Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 8/171 (4%)
 Frame = +3

Query: 75  FGF---MSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-----GCSVEVRDYNYLISG 230
           FGF   M+ +G++ D Y  N  VK L   G  +  +++ D     G  +++  YN L+SG
Sbjct: 287 FGFIEKMAKEGFSPDQYTFNTLVKGLCRVGHVKHALEIMDVMLQEGFDLDIYTYNALVSG 346

Query: 231 LIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFEFVVKLFGFMSSKGVRLN 410
           L +  +I    ++  +M+  D     V Y  ++  L      E   KL   ++SKG+  +
Sbjct: 347 LCKLGEIEEAVDILDQMVSRDCSPNTVTYNTLISTLCKENRVEEATKLARVLTSKGIIPD 406

Query: 411 VHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVIRAFCNAGR 563
           V   N L++GLC N      M++FE M+  GC   G TY  +I ++C+ G+
Sbjct: 407 VCTVNSLIQGLCLNSNHKVAMELFEEMKMKGCQPDGFTYSLLIDSYCSRGK 457



 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 46/184 (25%), Positives = 78/184 (42%), Gaps = 5/184 (2%)
 Frame = +3

Query: 30  LCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVF-----DGCS 194
           LCL      + A +LF  M  KG   D +  ++ +     +G+ E  + +       GC+
Sbjct: 417 LCL--NSNHKVAMELFEEMKMKGCQPDGFTYSLLIDSYCSRGKLEEALSLLKDMESSGCA 474

Query: 195 VEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFEFVVKL 374
                YN LI G  +  +I   EE+F +M    +    V Y  ++  L   +  E   +L
Sbjct: 475 RNAVIYNTLIDGFCKNKRIEDAEEIFDQMELQGISRNSVTYNTLIDGLCQNRRVEEASQL 534

Query: 375 FGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVIRAFCN 554
              M  +G++ +    N L+   C++G       + + M  NGC     TY  +I+  C 
Sbjct: 535 MDQMIMEGLKPDKFTYNSLLTYFCRSGDIKKAADIVQNMTSNGCEPDIVTYGTLIQGLCK 594

Query: 555 AGRS 566
           AGR+
Sbjct: 595 AGRT 598


>XP_007208068.1 hypothetical protein PRUPE_ppa001736mg [Prunus persica] ONI03319.1
           hypothetical protein PRUPE_6G250800 [Prunus persica]
          Length = 772

 Score = 84.3 bits (207), Expect = 1e-15
 Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 5/165 (3%)
 Frame = +3

Query: 84  MSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-----GCSVEVRDYNYLISGLIRCLQ 248
           MS +G++ D +  N  VK L   G  +  +++ D     G  +++  YN L+SGL +  +
Sbjct: 305 MSNEGFSPDQFTFNTLVKGLCRVGHVKHALEIMDVMLQQGFDLDIYTYNSLVSGLCKLGE 364

Query: 249 IGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFEFVVKLFGFMSSKGVRLNVHACNE 428
           I    E+  +M+  D     V Y  ++  L      E   KL   ++SKG+  +V   N 
Sbjct: 365 IEEAVEILDQMVSRDCSPNTVTYNTLISTLCKENRVEEATKLARVLTSKGILPDVCTVNS 424

Query: 429 LVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVIRAFCNAGR 563
           L++GL  N    + +++FE M+ NGC   G TY  +I ++C+ GR
Sbjct: 425 LIQGLFLNSNHKAAVELFEEMKMNGCQPDGFTYSMLIDSYCSRGR 469



 Score = 65.1 bits (157), Expect = 5e-09
 Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           T +  +  L      + A +LF  M   G   D +  +M +     +GR +  + +    
Sbjct: 421 TVNSLIQGLFLNSNHKAAVELFEEMKMNGCQPDGFTYSMLIDSYCSRGRLKEALNLLKEM 480

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              GC+  V  YN LI GL +  +I   EE+F +M    +    V Y  ++  L  ++  
Sbjct: 481 ELRGCARNVVIYNTLIDGLCKNKRIEDAEEIFDQMELQGISRNSVTYNILIDGLCQSRRV 540

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           E   +L   M  +G++ +    N L+   C+ G       + + M  NGC     TY  +
Sbjct: 541 EEASQLMDQMIIEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDIVTYGTL 600

Query: 537 IRAFCNAGR 563
           I   C AGR
Sbjct: 601 IGGLCKAGR 609



 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 5/187 (2%)
 Frame = +3

Query: 15   YSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD--- 185
            Y+  +  L   +  E A ++F  M  +G + ++   N+ +  L +  R E   ++ D   
Sbjct: 492  YNTLIDGLCKNKRIEDAEEIFDQMELQGISRNSVTYNILIDGLCQSRRVEEASQLMDQMI 551

Query: 186  --GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFE 359
              G   +   YN L++   R   I    ++   M         V Y  ++  L  A   +
Sbjct: 552  IEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRIQ 611

Query: 360  FVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVI 539
               +L   +  KG+  +  A N +++ L K  R    M++F  M + G P    TYK V+
Sbjct: 612  VASRLLRSLQMKGLVPSPQAYNPVIQSLFKRKRTTEAMRLFREMMEKGDPPDSITYKIVL 671

Query: 540  RAFCNAG 560
            R  CN G
Sbjct: 672  RGLCNGG 678


>XP_008241362.1 PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Prunus mume]
          Length = 768

 Score = 83.2 bits (204), Expect = 3e-15
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 5/165 (3%)
 Frame = +3

Query: 84  MSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-----GCSVEVRDYNYLISGLIRCLQ 248
           MS +G++ D +  N  VK L   G  +  +++ D     G  +++  YN L+SGL +  +
Sbjct: 301 MSNEGFSPDQFTFNTLVKGLCRVGHVKHALEIMDVMLQQGFDLDIYTYNSLVSGLCKLGE 360

Query: 249 IGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFEFVVKLFGFMSSKGVRLNVHACNE 428
           I    E+  +M+  D     V Y  ++  L      E   KL   ++SKG+  +V   N 
Sbjct: 361 IEEAVEILDQMVSRDCSPNTVTYNTLISTLCKENRVEEATKLARVLTSKGILPDVCTVNS 420

Query: 429 LVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVIRAFCNAGR 563
           L++GL  N    + +++FE M+ NGC   G TY  +I ++C+ G+
Sbjct: 421 LIQGLFLNSNHKAAVELFEEMKMNGCQPDGFTYSMLIDSYCSRGK 465



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           T +  +  L      + A +LF  M   G   D +  +M +     +G+ +  + +    
Sbjct: 417 TVNSLIQGLFLNSNHKAAVELFEEMKMNGCQPDGFTYSMLIDSYCSRGKLKEALNLLKEM 476

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              GC+  V  YN LI GL +  +I   EE+F +M    +    V Y  ++  L  ++  
Sbjct: 477 ELRGCARNVVIYNTLIDGLCKNKRIEDAEEIFDQMELQGISRNSVTYNILIDGLCQSRRV 536

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           E   +L   M  +G++ +    N L+   C+ G       + + M  NGC     TY  +
Sbjct: 537 EEASQLMDQMIMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDIVTYGTL 596

Query: 537 IRAFCNAGR 563
           I   C AGR
Sbjct: 597 IGGLCKAGR 605



 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 5/187 (2%)
 Frame = +3

Query: 15   YSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD--- 185
            Y+  +  L   +  E A ++F  M  +G + ++   N+ +  L +  R E   ++ D   
Sbjct: 488  YNTLIDGLCKNKRIEDAEEIFDQMELQGISRNSVTYNILIDGLCQSRRVEEASQLMDQMI 547

Query: 186  --GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFE 359
              G   +   YN L++   R   I    ++   M         V Y  ++  L  A   +
Sbjct: 548  MEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRIQ 607

Query: 360  FVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVI 539
               +L   +  KG+  +  A N +++ L K  R    M++F  M + G P    TYK V+
Sbjct: 608  VASRLLRSLQMKGLVPSPQAYNPVIQSLFKRKRTTEAMRLFREMMEKGDPPDSITYKIVL 667

Query: 540  RAFCNAG 560
            R  CN G
Sbjct: 668  RGLCNGG 674


>JAU64695.1 Pentatricopeptide repeat-containing protein, partial [Noccaea
           caerulescens]
          Length = 251

 Score = 80.5 bits (197), Expect = 4e-15
 Identities = 55/186 (29%), Positives = 84/186 (45%), Gaps = 6/186 (3%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEK-GRFEIVMKVF-- 182
           +Y   +  L+   + + A K +  M   G      + N+ +K L    G  +  +K+F  
Sbjct: 25  SYVTVLAILVEENQLKLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLE 84

Query: 183 ---DGCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKE 353
               GC  +   Y  LISGL R  +I   +++F  M+  D     V Y  ++  L  +K 
Sbjct: 85  MPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFKEMVEKDCAPTVVTYTSMIHGLCGSKN 144

Query: 354 FEFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKD 533
            E  V+L   M SKG+  NV   + L+ GLCK+GR    M++FE M   GC     TY  
Sbjct: 145 VEEAVRLLEEMKSKGIEPNVFTYSSLMDGLCKDGRPLQAMELFEMMMTRGCRPNMVTYST 204

Query: 534 VIRAFC 551
           +I   C
Sbjct: 205 LITGLC 210


>XP_009374668.1 PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Pyrus x bretschneideri]
          Length = 775

 Score = 81.6 bits (200), Expect = 1e-14
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 5/165 (3%)
 Frame = +3

Query: 84  MSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-----GCSVEVRDYNYLISGLIRCLQ 248
           M  +G++ D +  N  VK L   G     +++ D     G  +++  YN LISGL +  +
Sbjct: 308 MVDEGFSPDQFTFNTLVKGLCRVGHVTHALEIMDVMLQEGFELDIYTYNSLISGLCKLGE 367

Query: 249 IGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFEFVVKLFGFMSSKGVRLNVHACNE 428
           I    E+  +M+  D     V Y  ++  L      E   KL   ++SKG+  +V   N 
Sbjct: 368 IEEAVELLDQMVSRDCSPNTVTYNTLISTLCKENRVEEATKLARVLTSKGILPDVCTVNS 427

Query: 429 LVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVIRAFCNAGR 563
           L++GLC N    + +++FE M+ +GC   G TY  +I + C+ GR
Sbjct: 428 LIQGLCLNSNHKAALELFEEMKASGCQPDGFTYSMLIDSHCSRGR 472



 Score = 68.9 bits (167), Expect = 3e-10
 Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 5/183 (2%)
 Frame = +3

Query: 30  LCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-----GCS 194
           LCL      + A +LF  M   G   D +  +M +     +GR +  M +       GC+
Sbjct: 432 LCL--NSNHKAALELFEEMKASGCQPDGFTYSMLIDSHCSRGRLKEAMSLLTEMELRGCA 489

Query: 195 VEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFEFVVKL 374
             V  YN LI GL +  +I   EE+F +M    +    V Y  ++  L  +K  E   +L
Sbjct: 490 RNVVIYNTLIDGLCKNKRIDDAEEIFDQMELQGISRNSVTYNTLIDGLCQSKRVEEASQL 549

Query: 375 FGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVIRAFCN 554
              M  +G++ +    N ++   C+ G       + + M  NGC     TY  +I   C 
Sbjct: 550 MDQMIMEGLKPDKFTYNSMLTYFCRAGDIKKAADIVQTMSSNGCEPDIVTYGTLIGGLCR 609

Query: 555 AGR 563
           AGR
Sbjct: 610 AGR 612


>XP_011094832.1 PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Sesamum indicum] XP_011094833.1
           PREDICTED: pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic [Sesamum indicum]
          Length = 768

 Score = 80.5 bits (197), Expect = 3e-14
 Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 5/190 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVF--- 182
           T++  +  L     F  A ++F  M  KG   D +  N+ + CL  KG+ +  +++    
Sbjct: 419 TFNSLIQGLCLASNFTMAMEVFLDMKAKGCQPDEFTYNILIDCLCTKGKLDEALRLLKDM 478

Query: 183 --DGCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              GC+  V  YN LI G  +  +I   EE+F +M    V    V Y  ++  L   K  
Sbjct: 479 ESSGCARNVVTYNTLIDGFCKSNKIEEAEEIFDQMELQGVSRNVVTYNTLIDGLCKCKRV 538

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           E   +L   M  +G++ +    N L+   C+ G       + + M  NGC     TY  +
Sbjct: 539 EEAAQLMDQMIMEGLKPDKFTYNSLLSYFCRAGDIKKAADIVQTMTSNGCEPDVVTYGTL 598

Query: 537 IRAFCNAGRS 566
           I+  C AGR+
Sbjct: 599 IQGLCKAGRA 608



 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 5/165 (3%)
 Frame = +3

Query: 84  MSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-----GCSVEVRDYNYLISGLIRCLQ 248
           M  +G+  D +  N  +  L + G     +++ D     G   +V  YN +ISGL +  +
Sbjct: 303 MVNEGFCPDHFTFNTLISGLCKVGHVNHALEILDLMLQEGFDPDVFTYNTVISGLCKMGE 362

Query: 249 IGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFEFVVKLFGFMSSKGVRLNVHACNE 428
           +    EV  +ML  D     V Y  I+  L    + +   +L   ++SKGV  +V   N 
Sbjct: 363 VEEAMEVLKQMLSRDCSPNAVTYNTIISTLCKENQVQEATELARVLTSKGVMPDVSTFNS 422

Query: 429 LVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVIRAFCNAGR 563
           L++GLC    F   M+VF  M+  GC     TY  +I   C  G+
Sbjct: 423 LIQGLCLASNFTMAMEVFLDMKAKGCQPDEFTYNILIDCLCTKGK 467



 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 50/225 (22%), Positives = 85/225 (37%), Gaps = 40/225 (17%)
 Frame = +3

Query: 6    DHTYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD 185
            + TY+  + CL    + + A +L   M   G A +    N  +    +  + E   ++FD
Sbjct: 452  EFTYNILIDCLCTKGKLDEALRLLKDMESSGCARNVVTYNTLIDGFCKSNKIEEAEEIFD 511

Query: 186  -----GCSVEVRDYNYLISGLIRCLQIGSTEEVFARM----------------------- 281
                 G S  V  YN LI GL +C ++    ++  +M                       
Sbjct: 512  QMELQGVSRNVVTYNTLIDGLCKCKRVEEAAQLMDQMIMEGLKPDKFTYNSLLSYFCRAG 571

Query: 282  -LRLDVPLID-----------VVYARIVIRLLDAKEFEFVVKLFGFMSSKGVRLNVHACN 425
             ++    ++            V Y  ++  L  A   E   +L   +  KG+ L  HA N
Sbjct: 572  DIKKAADIVQTMTSNGCEPDVVTYGTLIQGLCKAGRAEVATRLLRSIQMKGLILTPHAYN 631

Query: 426  ELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVIRAFCNAG 560
             +++ L K  R    M++F  ME+   P    +YK V R  C+ G
Sbjct: 632  PILQALFKRKRIKEAMRLFREMEEKSDPPDAISYKIVFRGLCSGG 676


>XP_015889158.1 PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Ziziphus jujuba]
          Length = 756

 Score = 80.1 bits (196), Expect = 3e-14
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 5/165 (3%)
 Frame = +3

Query: 84  MSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-----GCSVEVRDYNYLISGLIRCLQ 248
           M+  G+  D +  N  V  L   G  +  +++ D     G  +++  YN LISGL +  +
Sbjct: 289 MANDGFLPDQFTYNTLVNGLCRAGHVKHALEIMDVILQRGFDLDIFSYNSLISGLCKLGE 348

Query: 249 IGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFEFVVKLFGFMSSKGVRLNVHACNE 428
           +    E+  +M+  D P   V Y  ++  L    +     +L   ++SKG+  +V   N 
Sbjct: 349 VEEAVEILEQMVSRDCPPNTVTYNTLISTLCKDNQVTEATELARVLTSKGILPDVCTFNS 408

Query: 429 LVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVIRAFCNAGR 563
           L++GLC  G +   +++FE M+  GC     TY  +I ++C+ GR
Sbjct: 409 LIQGLCMTGNYKFALELFEEMKHKGCQPDEFTYNMLIDSYCSRGR 453



 Score = 74.7 bits (182), Expect = 3e-12
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVF--- 182
           T++  +  L     ++FA +LF  M  KG   D +  NM +     +GR +  + +    
Sbjct: 405 TFNSLIQGLCMTGNYKFALELFEEMKHKGCQPDEFTYNMLIDSYCSRGRLKDALNLLKEM 464

Query: 183 --DGCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              GC+  V  YN LI GL +  +I   E++F +M    +    V Y  ++  L   +  
Sbjct: 465 ESSGCARNVVVYNTLIDGLCKSKRIEEAEQIFDQMELQGISRNSVTYNTLIDGLCQNRRV 524

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           E   +L   M  +G++ +    N L+   C+ G       + + M  NGC     TY  +
Sbjct: 525 EEASQLMDQMIMEGLKPDKFTYNSLLTYFCRTGDIKKAADIVQTMTSNGCEPDIVTYGTI 584

Query: 537 IRAFCNAGR 563
           I   C AGR
Sbjct: 585 IGGLCKAGR 593


>XP_015889101.1 PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Ziziphus jujuba]
          Length = 756

 Score = 79.7 bits (195), Expect = 5e-14
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 5/165 (3%)
 Frame = +3

Query: 84  MSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-----GCSVEVRDYNYLISGLIRCLQ 248
           M+  G+  D +  N  V  L   G  +  +++ D     G  +++  YN LISGL +  +
Sbjct: 289 MANDGFLPDQFTYNTLVNGLCRAGHVKHALEIMDVILQRGFDLDIFTYNSLISGLCKLGE 348

Query: 249 IGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFEFVVKLFGFMSSKGVRLNVHACNE 428
           +    E+  +M+  D P   V Y  ++  L    +     +L   ++SKG+  +V   N 
Sbjct: 349 VEEAVEILEQMVSRDCPPNTVTYNTLISTLCKDNQVTEATELARVLTSKGILPDVCTFNS 408

Query: 429 LVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVIRAFCNAGR 563
           L++GLC  G +   +++FE M+  GC     TY  +I ++C+ GR
Sbjct: 409 LIQGLCMTGNYKFALELFEEMKHKGCQPDEFTYNMLIDSYCSRGR 453



 Score = 73.6 bits (179), Expect = 6e-12
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 5/189 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVF--- 182
           T++  +  L     ++FA +LF  M  KG   D +  NM +     +GR +  + +    
Sbjct: 405 TFNSLIQGLCMTGNYKFALELFEEMKHKGCQPDEFTYNMLIDSYCSRGRLKDALNLLKEM 464

Query: 183 --DGCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              GC+  V  YN LI GL +  +I   E++F +M    +    V Y  ++  L   +  
Sbjct: 465 ESSGCARNVVVYNTLIDGLCKSKRIEEAEQIFDQMELQGISRNSVTYNTLIDGLCQNRRV 524

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           E   +L   M  +G++ +    N L+   C+ G       + + M  NGC     TY  +
Sbjct: 525 EEASQLMDQMIMEGLKPDKFTYNSLLTYFCRTGDIKKVADIVQTMTSNGCEPDIVTYGTI 584

Query: 537 IRAFCNAGR 563
           I   C AGR
Sbjct: 585 IGGLCKAGR 593


>AQK97304.1 Pentatricopeptide repeat-containing protein mitochondrial [Zea
           mays]
          Length = 431

 Score = 79.3 bits (194), Expect = 5e-14
 Identities = 59/172 (34%), Positives = 80/172 (46%), Gaps = 6/172 (3%)
 Frame = +3

Query: 63  AGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-----GCSVEVRDYNYLIS 227
           A  L   M   G A D    N  V  L   GR     ++ D     GC      Y +L+ 
Sbjct: 204 AAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTRGCMPSAVTYGFLLQ 263

Query: 228 GLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIR-LLDAKEFEFVVKLFGFMSSKGVR 404
           GL R  Q    +E  A + RL  P ++VV    VIR  L   +     +L+  M SKG  
Sbjct: 264 GLCRTRQ---ADEACALLERL--PEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCP 318

Query: 405 LNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVIRAFCNAG 560
            +VH  N L+ GLCK GRFGS +++ + ME+NGC     TY  ++ +FC  G
Sbjct: 319 PDVHTYNILMHGLCKLGRFGSAVRMLDKMEENGCAPNIVTYSTLLHSFCRNG 370


>XP_008657831.1 PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Zea mays]
          Length = 463

 Score = 79.3 bits (194), Expect = 5e-14
 Identities = 59/172 (34%), Positives = 80/172 (46%), Gaps = 6/172 (3%)
 Frame = +3

Query: 63  AGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-----GCSVEVRDYNYLIS 227
           A  L   M   G A D    N  V  L   GR     ++ D     GC      Y +L+ 
Sbjct: 236 AAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTRGCMPSAVTYGFLLQ 295

Query: 228 GLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIR-LLDAKEFEFVVKLFGFMSSKGVR 404
           GL R  Q    +E  A + RL  P ++VV    VIR  L   +     +L+  M SKG  
Sbjct: 296 GLCRTRQ---ADEACALLERL--PEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCP 350

Query: 405 LNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVIRAFCNAG 560
            +VH  N L+ GLCK GRFGS +++ + ME+NGC     TY  ++ +FC  G
Sbjct: 351 PDVHTYNILMHGLCKLGRFGSAVRMLDKMEENGCAPNIVTYSTLLHSFCRNG 402


>JAU81433.1 Pentatricopeptide repeat-containing protein, partial [Noccaea
           caerulescens]
          Length = 334

 Score = 78.6 bits (192), Expect = 6e-14
 Identities = 54/186 (29%), Positives = 83/186 (44%), Gaps = 6/186 (3%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEK-GRFEIVMKVF-- 182
           +Y   +  L+   + + A K +  M   G      + N+ +K L    G  +  +K+F  
Sbjct: 121 SYVTVLAILVEEDQLKLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLE 180

Query: 183 ---DGCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKE 353
               GC  +   Y  LISGL R  +I   +++F  M+  D     V Y  ++  L  +K 
Sbjct: 181 MPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFKEMVEKDCAPTVVTYTSMIHGLCGSKN 240

Query: 354 FEFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKD 533
            E  V+    M SKG+  NV   + L+ GLCK+GR    M++FE M   GC     TY  
Sbjct: 241 VEEAVRFLEEMRSKGIEPNVFTYSSLMDGLCKDGRPLQAMELFEMMMTRGCRPNMVTYST 300

Query: 534 VIRAFC 551
           +I   C
Sbjct: 301 LITGLC 306


>XP_012831987.1 PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Erythranthe guttata] EYU41700.1
           hypothetical protein MIMGU_mgv1a001713mg [Erythranthe
           guttata]
          Length = 769

 Score = 79.3 bits (194), Expect = 6e-14
 Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 5/190 (2%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVF--- 182
           T++  +  L     F  A  LF  M  KG   D +  N+ + CL  KG+ +  +++    
Sbjct: 420 TFNSLIQGLCLSSNFSIAMDLFFEMKTKGCKPDEFTYNILIDCLCTKGKLDEALRLLKDM 479

Query: 183 --DGCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              GC+  V  YN LI G  +  +I   EE+F +M    V    V Y  ++  L   K  
Sbjct: 480 ESSGCARSVITYNTLIDGFCKIKKIEEAEEIFDQMEVQGVSRNLVTYNTLIDGLSKCKRV 539

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDV 536
           +   +L   M  +G++ +    N L+   C+ G       + + M  NGC     TY  +
Sbjct: 540 DEAAQLMDQMLMEGLKPDKFTYNSLLSYFCRTGDIKKAADIVQTMTTNGCEPDVVTYGTL 599

Query: 537 IRAFCNAGRS 566
           I+  C AGR+
Sbjct: 600 IQGLCKAGRT 609



 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 5/165 (3%)
 Frame = +3

Query: 84  MSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-----GCSVEVRDYNYLISGLIRCLQ 248
           M+ +G+  D +  N  +  L + G     +++ D     G   ++  YN +ISGL +  +
Sbjct: 304 MANEGFCPDKFTFNTLISGLCKVGHVNHALEILDLMLQEGFDPDLFTYNAVISGLCKTGE 363

Query: 249 IGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFEFVVKLFGFMSSKGVRLNVHACNE 428
           +    EV ++ML        V Y  I+  L    + +    L  F++SKGV  +V   N 
Sbjct: 364 VKEAMEVLSQMLSRGCTPNAVTYNAIINTLCKDNQVQEATDLARFLTSKGVLPDVSTFNS 423

Query: 429 LVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVIRAFCNAGR 563
           L++GLC +  F   M +F  M+  GC     TY  +I   C  G+
Sbjct: 424 LIQGLCLSSNFSIAMDLFFEMKTKGCKPDEFTYNILIDCLCTKGK 468


>JAU50923.1 Pentatricopeptide repeat-containing protein, partial [Noccaea
           caerulescens]
          Length = 179

 Score = 75.9 bits (185), Expect = 6e-14
 Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 6/178 (3%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEK-GRFEIVMKVF-- 182
           +Y   +  L+   + + A K +  M   G      + N+ +K L    G  +  +K+F  
Sbjct: 2   SYVTVLAILVEENQLKLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLE 61

Query: 183 ---DGCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKE 353
               GC  +   Y  LISGL R  +I   +++F  M+  D     V Y  ++  L  +K 
Sbjct: 62  MPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFKEMVEKDCAPTVVTYTSMIHGLCGSKN 121

Query: 354 FEFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATY 527
            E  V+L   M SKG+  NV   + L+ GLCK+GR    M++FE M   GC     TY
Sbjct: 122 VEEAVRLLEEMKSKGIEPNVFTYSSLMDGLCKDGRPLQAMELFEMMMTRGCRPNMVTY 179


>XP_019085227.1 PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Camelina sativa]
          Length = 538

 Score = 79.0 bits (193), Expect = 8e-14
 Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 6/189 (3%)
 Frame = +3

Query: 12  TYSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-- 185
           TY+  +   +N   F  A +L+  M  KG  LD +     V  L ++ R +   ++FD  
Sbjct: 292 TYNIMISSFVNEGNFLRAEELYVEMLRKGVVLDTFTYTSMVDGLCKQNRLDEARQMFDSM 351

Query: 186 ---GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEF 356
              GCS  +  +N LI+G  +  ++    E+F  M R  +    + Y+ ++       + 
Sbjct: 352 ASKGCSPNLVTFNTLINGYCKARRVDEGLELFCEMYRRGIVANTITYSTLIHGFCQVGDL 411

Query: 357 EFVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNG-CPRTGATYKD 533
              + +F  M S GV  N    + L+ G C+ G F   + +F+ M  +G CP T  TY  
Sbjct: 412 NGALDIFQEMVSSGVCPNTITYSTLIHGFCQEGDFNGALDIFQDMVSSGVCPNT-ITYST 470

Query: 534 VIRAFCNAG 560
           +I  FC  G
Sbjct: 471 LIHGFCQVG 479



 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 5/178 (2%)
 Frame = +3

Query: 42  NGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-----GCSVEVR 206
           N  + + A +LF  M      LD    N+ +  + +  + +    +F+     G    VR
Sbjct: 232 NDGKIDKALELFEVMQKSKMDLDTAIYNIIIHGMCKSSKVDEAWDLFNSLPLNGVEPNVR 291

Query: 207 DYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFEFVVKLFGFM 386
            YN +IS  +        EE++  MLR  V L    Y  +V  L      +   ++F  M
Sbjct: 292 TYNIMISSFVNEGNFLRAEELYVEMLRKGVVLDTFTYTSMVDGLCKQNRLDEARQMFDSM 351

Query: 387 SSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVIRAFCNAG 560
           +SKG   N+   N L+ G CK  R   G+++F  M + G      TY  +I  FC  G
Sbjct: 352 ASKGCSPNLVTFNTLINGYCKARRVDEGLELFCEMYRRGIVANTITYSTLIHGFCQVG 409



 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 5/172 (2%)
 Frame = +3

Query: 63  AGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD-----GCSVEVRDYNYLIS 227
           A +L+  M  +  + +    N  +    +  R +   ++F+     GCS ++   N LI 
Sbjct: 99  AEELYSDMLQRDISPNTITYNSLIDGFCKHSRLDDAKRMFNLMVSKGCSPDIITVNTLID 158

Query: 228 GLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFEFVVKLFGFMSSKGVRL 407
           G  R  ++ +  ++   M RL +      Y  ++       +      LF  M S GV  
Sbjct: 159 GCCRAKRLDAGVKLLHEMSRLGLVPDTASYNTLIHGFCQVGDLNAAQDLFQEMISHGVSP 218

Query: 408 NVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVIRAFCNAGR 563
           N+  C  L+ G C +G+    +++FE M+K+      A Y  +I   C + +
Sbjct: 219 NIVTCGSLLDGFCNDGKIDKALELFEVMQKSKMDLDTAIYNIIIHGMCKSSK 270



 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 5/171 (2%)
 Frame = +3

Query: 63  AGKLFGFMSGKGYALDAYARNMFVKCLSEKGRF---EIVMKVFDGCSVE--VRDYNYLIS 227
           A  LF  M  KG   D    N  +      G++   E +++     SV   V  +N LI+
Sbjct: 29  AQHLFTEMLEKGIMPDVQTYNCMIYGCCSYGKWSDAEQLLRDMIKRSVHPNVVTFNALIN 88

Query: 228 GLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFEFVVKLFGFMSSKGVRL 407
              +  ++   EE+++ ML+ D+    + Y  ++         +   ++F  M SKG   
Sbjct: 89  ASFKEGKVSEAEELYSDMLQRDISPNTITYNSLIDGFCKHSRLDDAKRMFNLMVSKGCSP 148

Query: 408 NVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVIRAFCNAG 560
           ++   N L+ G C+  R  +G+K+   M + G     A+Y  +I  FC  G
Sbjct: 149 DIITVNTLIDGCCRAKRLDAGVKLLHEMSRLGLVPDTASYNTLIHGFCQVG 199


>XP_012487249.1 PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Gossypium raimondii] KJB38291.1
           hypothetical protein B456_006G247100 [Gossypium
           raimondii]
          Length = 638

 Score = 79.0 bits (193), Expect = 8e-14
 Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 5/188 (2%)
 Frame = +3

Query: 15  YSKCVLCLLNGQEFEFAGKLFGFMSGKGYALDAYARNMFVKCLSEKGRFEIVMKVFD--- 185
           YS  V  L +    + A K F  M G+G A D    N+ +   S +G ++  +++FD   
Sbjct: 251 YSSLVSGLCSLGRLKEAVKFFDEMIGRGIAADLVMYNLLIHGFSREGMWKEAIRIFDRMV 310

Query: 186 --GCSVEVRDYNYLISGLIRCLQIGSTEEVFARMLRLDVPLIDVVYARIVIRLLDAKEFE 359
             G S +   +  LIS L +   +    E+FA M + ++      Y  ++  L  A + +
Sbjct: 311 GEGISPDEITFTTLISCLCKKGMVVKAHEMFAFMRQKEMKPTLFTYNSLMDGLCRAGQLD 370

Query: 360 FVVKLFGFMSSKGVRLNVHACNELVKGLCKNGRFGSGMKVFEWMEKNGCPRTGATYKDVI 539
              KLF  +  +G  +NV + N ++ G CK+ +   G ++F  M+  GC     TY  +I
Sbjct: 371 EAAKLFRSIPDQGYEVNVISYNIMINGYCKSQKIDEGFQLFRDMQFQGCKPNARTYNTLI 430

Query: 540 RAFCNAGR 563
           +A C  GR
Sbjct: 431 QALCRVGR 438