BLASTX nr result
ID: Ephedra29_contig00017501
seq
BLASTX 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ephedra29_contig00017501 (1582 letters) Database: ./nr 115,041,592 sequences; 42,171,959,267 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value XP_011628926.1 PREDICTED: RNA pseudouridine synthase 2, chloropl... 417 e-139 ERM96267.1 hypothetical protein AMTR_s00001p00157430 [Amborella ... 417 e-139 XP_010241330.1 PREDICTED: RNA pseudouridine synthase 2, chloropl... 410 e-136 XP_010241329.1 PREDICTED: RNA pseudouridine synthase 2, chloropl... 410 e-136 XP_010533976.1 PREDICTED: RNA pseudouridine synthase 2, chloropl... 409 e-136 XP_010241328.1 PREDICTED: RNA pseudouridine synthase 2, chloropl... 410 e-136 XP_003634352.1 PREDICTED: RNA pseudouridine synthase 2, chloropl... 406 e-135 XP_015887376.1 PREDICTED: RNA pseudouridine synthase 2, chloropl... 404 e-134 XP_016687702.1 PREDICTED: RNA pseudouridine synthase 2, chloropl... 402 e-133 XP_012444688.1 PREDICTED: RNA pseudouridine synthase 2, chloropl... 402 e-133 XP_006342081.1 PREDICTED: RNA pseudouridine synthase 2, chloropl... 401 e-133 XP_017621288.1 PREDICTED: RNA pseudouridine synthase 2, chloropl... 401 e-132 KHG01344.1 hypothetical protein F383_22314 [Gossypium arboreum] 400 e-132 XP_010320443.1 PREDICTED: RNA pseudouridine synthase 2, chloropl... 400 e-132 XP_004238386.1 PREDICTED: RNA pseudouridine synthase 2, chloropl... 400 e-132 XP_016725957.1 PREDICTED: RNA pseudouridine synthase 2, chloropl... 399 e-132 XP_016568333.1 PREDICTED: RNA pseudouridine synthase 2, chloropl... 399 e-132 XP_016568332.1 PREDICTED: RNA pseudouridine synthase 2, chloropl... 399 e-132 XP_002519370.2 PREDICTED: RNA pseudouridine synthase 2, chloropl... 398 e-131 XP_006473714.1 PREDICTED: RNA pseudouridine synthase 2, chloropl... 396 e-131 >XP_011628926.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Amborella trichopoda] Length = 437 Score = 417 bits (1073), Expect = e-139 Identities = 201/361 (55%), Positives = 259/361 (71%), Gaps = 3/361 (0%) Frame = +2 Query: 233 FNDKVGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIIS 412 F V G+ K+R+D+WLS+R+ +SRARIQSS+RQG V VNG I K SHI++ GD++ Sbjct: 72 FESSVAVGSKKERIDSWLSARIGDVSRARIQSSIRQGFVKVNGLPITKVSHIVKVGDMVD 131 Query: 413 CNIAPLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLP 592 C ++ L PL+AEPE+M L NKPAHMVVHPAPGN NGTLVNGILHHC LP Sbjct: 132 CTVSHLQPLKAEPEDMPLDIIYEDDHVLVVNKPAHMVVHPAPGNANGTLVNGILHHCTLP 191 Query: 593 SIGCXXXXXXXXXXXXXXXEVNM---PLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNEN 763 + G + M + S++RPGIVHR+DKGTSGLLV+AKNE+ Sbjct: 192 AFGLPDGELTSESDDECDNGLTMFNPDPISTQCRSSIRPGIVHRLDKGTSGLLVVAKNEH 251 Query: 764 AHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQAR 943 +HA L+EQF+ HT+ R+Y+SLTCGVP+ +G IE+ IARD NNR+RM AV N +AR Sbjct: 252 SHAHLSEQFKLHTIHRQYISLTCGVPSPSNGCIEIPIARDMNNRIRMAAVSGQNNTRKAR 311 Query: 944 FAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRL 1123 A SRY V + L GG +VEWRL+TGRTHQIRVHA++IG PLLGDE+YGGTK +ALSRL Sbjct: 312 LATSRYHVMEVLAGGGSALVEWRLQTGRTHQIRVHAKYIGNPLLGDEVYGGTKSMALSRL 371 Query: 1124 KCKLPSKYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303 + + PS YHG +S+++S+++RPCLHA SLGF+HP + E VLF+CPPP DF +VL L+ + Sbjct: 372 RPRTPSHYHGPLSQLVSNLQRPCLHAFSLGFKHPHSKENVLFTCPPPPDFAEVLRQLQSI 431 Query: 1304 K 1306 + Sbjct: 432 R 432 >ERM96267.1 hypothetical protein AMTR_s00001p00157430 [Amborella trichopoda] Length = 452 Score = 417 bits (1073), Expect = e-139 Identities = 201/361 (55%), Positives = 259/361 (71%), Gaps = 3/361 (0%) Frame = +2 Query: 233 FNDKVGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIIS 412 F V G+ K+R+D+WLS+R+ +SRARIQSS+RQG V VNG I K SHI++ GD++ Sbjct: 72 FESSVAVGSKKERIDSWLSARIGDVSRARIQSSIRQGFVKVNGLPITKVSHIVKVGDMVD 131 Query: 413 CNIAPLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLP 592 C ++ L PL+AEPE+M L NKPAHMVVHPAPGN NGTLVNGILHHC LP Sbjct: 132 CTVSHLQPLKAEPEDMPLDIIYEDDHVLVVNKPAHMVVHPAPGNANGTLVNGILHHCTLP 191 Query: 593 SIGCXXXXXXXXXXXXXXXEVNM---PLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNEN 763 + G + M + S++RPGIVHR+DKGTSGLLV+AKNE+ Sbjct: 192 AFGLPDGELTSESDDECDNGLTMFNPDPISTQCRSSIRPGIVHRLDKGTSGLLVVAKNEH 251 Query: 764 AHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQAR 943 +HA L+EQF+ HT+ R+Y+SLTCGVP+ +G IE+ IARD NNR+RM AV N +AR Sbjct: 252 SHAHLSEQFKLHTIHRQYISLTCGVPSPSNGCIEIPIARDMNNRIRMAAVSGQNNTRKAR 311 Query: 944 FAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRL 1123 A SRY V + L GG +VEWRL+TGRTHQIRVHA++IG PLLGDE+YGGTK +ALSRL Sbjct: 312 LATSRYHVMEVLAGGGSALVEWRLQTGRTHQIRVHAKYIGNPLLGDEVYGGTKSMALSRL 371 Query: 1124 KCKLPSKYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303 + + PS YHG +S+++S+++RPCLHA SLGF+HP + E VLF+CPPP DF +VL L+ + Sbjct: 372 RPRTPSHYHGPLSQLVSNLQRPCLHAFSLGFKHPHSKENVLFTCPPPPDFAEVLRQLQSI 431 Query: 1304 K 1306 + Sbjct: 432 R 432 >XP_010241330.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3 [Nelumbo nucifera] Length = 443 Score = 410 bits (1055), Expect = e-136 Identities = 217/420 (51%), Positives = 281/420 (66%), Gaps = 17/420 (4%) Frame = +2 Query: 95 YLVSFPPRRITVSASTSR--RVLTRAVISTTPTPAKTIAVCKEEHDKG------FNDKVG 250 YL+ PR ASTSR RVL + S+T A + ++ +G D V Sbjct: 22 YLLHRSPR-----ASTSRFFRVLNCS-FSSTGESASDYQSSEPQNRRGNFAGVCLEDTVE 75 Query: 251 EGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPL 430 + K R+D+W+SSR+ GISRAR+QSS++ GLV VNG I+K SH+IRAGD ++C I L Sbjct: 76 ISSVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKVSHVIRAGDKVNCTIKEL 135 Query: 431 VPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXX 610 PLRAEPE++ L NKPAHMVVHPAPGN NGTLVNGILHHC LP + Sbjct: 136 QPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNGILHHCSLPMVALTN 195 Query: 611 XXXXXXXXXXXXXEVNM---------PLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNEN 763 E ++ + E +VRPGIVHR+DKGTSGLLV+AK+E+ Sbjct: 196 SKVLSETDDISDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLDKGTSGLLVVAKDEH 255 Query: 764 AHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQAR 943 +HA L+EQF+ HT+ R Y+SLTCGVP+ GRIE+ I RD +NR+RM AVPS N+ QAR Sbjct: 256 SHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMAAVPSPNSSRQAR 315 Query: 944 FAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRL 1123 AASRY V + L GG +VEWRLETGRTHQIR HA+++G PLLGDE+YGGT+ +ALS L Sbjct: 316 HAASRYRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLL 375 Query: 1124 KCKLPSKYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303 + + S +HG++S+++S ++RPCLHA +LGF+HP TGE + FSCPPP DF +VL+ LR + Sbjct: 376 RTRSHSSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRSI 435 >XP_010241329.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2 [Nelumbo nucifera] Length = 453 Score = 410 bits (1055), Expect = e-136 Identities = 217/420 (51%), Positives = 281/420 (66%), Gaps = 17/420 (4%) Frame = +2 Query: 95 YLVSFPPRRITVSASTSR--RVLTRAVISTTPTPAKTIAVCKEEHDKG------FNDKVG 250 YL+ PR ASTSR RVL + S+T A + ++ +G D V Sbjct: 22 YLLHRSPR-----ASTSRFFRVLNCS-FSSTGESASDYQSSEPQNRRGNFAGVCLEDTVE 75 Query: 251 EGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPL 430 + K R+D+W+SSR+ GISRAR+QSS++ GLV VNG I+K SH+IRAGD ++C I L Sbjct: 76 ISSVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKVSHVIRAGDKVNCTIKEL 135 Query: 431 VPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXX 610 PLRAEPE++ L NKPAHMVVHPAPGN NGTLVNGILHHC LP + Sbjct: 136 QPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNGILHHCSLPMVALTN 195 Query: 611 XXXXXXXXXXXXXEVNM---------PLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNEN 763 E ++ + E +VRPGIVHR+DKGTSGLLV+AK+E+ Sbjct: 196 SKVLSETDDISDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLDKGTSGLLVVAKDEH 255 Query: 764 AHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQAR 943 +HA L+EQF+ HT+ R Y+SLTCGVP+ GRIE+ I RD +NR+RM AVPS N+ QAR Sbjct: 256 SHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMAAVPSPNSSRQAR 315 Query: 944 FAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRL 1123 AASRY V + L GG +VEWRLETGRTHQIR HA+++G PLLGDE+YGGT+ +ALS L Sbjct: 316 HAASRYRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLL 375 Query: 1124 KCKLPSKYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303 + + S +HG++S+++S ++RPCLHA +LGF+HP TGE + FSCPPP DF +VL+ LR + Sbjct: 376 RTRSHSSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRSI 435 >XP_010533976.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Tarenaya hassleriana] Length = 435 Score = 409 bits (1052), Expect = e-136 Identities = 217/412 (52%), Positives = 275/412 (66%) Frame = +2 Query: 68 TTALSSPLSYLVSFPPRRITVSASTSRRVLTRAVISTTPTPAKTIAVCKEEHDKGFNDKV 247 +++ SS LS L SF PR S+S + V +P + A K F + V Sbjct: 24 SSSSSSSLSVLFSFFPRVSRFVRSSSGIPDSDRVRRPEISPRASNAGVK------FQETV 77 Query: 248 GEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAP 427 T K RLD+W+SSR+ G+SRAR+QSS+R GLV VNG ++K SH ++AGD++SC I+ Sbjct: 78 DVATGKIRLDSWISSRVHGVSRARVQSSIRLGLVCVNGRVVDKVSHNVKAGDMVSCTISE 137 Query: 428 LVPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCX 607 L PL+AEPE+M L NKPAHMVVHPAPGNPNGTLVNGILHHC LP + Sbjct: 138 LQPLKAEPEDMPLDIVYEDNHVLVVNKPAHMVVHPAPGNPNGTLVNGILHHCSLPIVAYS 197 Query: 608 XXXXXXXXXXXXXXEVNMPLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLAEQ 787 E M + ++VRPGIVHR+DKGTSGLLV+AK+E++HA LAEQ Sbjct: 198 DTEVDPDEEDFSEDEETMS--SSAYSASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQ 255 Query: 788 FEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAV 967 F++HT+ R YVSLTCGVP+ GRI + I RD NNR+RM A+P + R +AR AASRY V Sbjct: 256 FKQHTIERVYVSLTCGVPSPSHGRIVIPIGRDLNNRIRMAAIPGLSNRGRARHAASRYKV 315 Query: 968 TKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKY 1147 + L GG +VEWRLETGRTHQIR HA+++G PLLGDE+YG TK +ALS L+ + Sbjct: 316 IEILAGGGSALVEWRLETGRTHQIRAHAKYVGVPLLGDEVYGATKSMALSLLQKRASRND 375 Query: 1148 HGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303 HG+I +++S ++RPCLHA LGF+HP TGE V FSCPPP DF + L LRKL Sbjct: 376 HGQILELVSRLDRPCLHALVLGFKHPCTGEDVKFSCPPPPDFAETLGMLRKL 427 >XP_010241328.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1 [Nelumbo nucifera] Length = 471 Score = 410 bits (1055), Expect = e-136 Identities = 217/420 (51%), Positives = 281/420 (66%), Gaps = 17/420 (4%) Frame = +2 Query: 95 YLVSFPPRRITVSASTSR--RVLTRAVISTTPTPAKTIAVCKEEHDKG------FNDKVG 250 YL+ PR ASTSR RVL + S+T A + ++ +G D V Sbjct: 22 YLLHRSPR-----ASTSRFFRVLNCS-FSSTGESASDYQSSEPQNRRGNFAGVCLEDTVE 75 Query: 251 EGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPL 430 + K R+D+W+SSR+ GISRAR+QSS++ GLV VNG I+K SH+IRAGD ++C I L Sbjct: 76 ISSVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKVSHVIRAGDKVNCTIKEL 135 Query: 431 VPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXX 610 PLRAEPE++ L NKPAHMVVHPAPGN NGTLVNGILHHC LP + Sbjct: 136 QPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNGILHHCSLPMVALTN 195 Query: 611 XXXXXXXXXXXXXEVNM---------PLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNEN 763 E ++ + E +VRPGIVHR+DKGTSGLLV+AK+E+ Sbjct: 196 SKVLSETDDISDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLDKGTSGLLVVAKDEH 255 Query: 764 AHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQAR 943 +HA L+EQF+ HT+ R Y+SLTCGVP+ GRIE+ I RD +NR+RM AVPS N+ QAR Sbjct: 256 SHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMAAVPSPNSSRQAR 315 Query: 944 FAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRL 1123 AASRY V + L GG +VEWRLETGRTHQIR HA+++G PLLGDE+YGGT+ +ALS L Sbjct: 316 HAASRYRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLL 375 Query: 1124 KCKLPSKYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303 + + S +HG++S+++S ++RPCLHA +LGF+HP TGE + FSCPPP DF +VL+ LR + Sbjct: 376 RTRSHSSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRSI 435 >XP_003634352.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1 [Vitis vinifera] CBI18920.3 unnamed protein product, partial [Vitis vinifera] Length = 433 Score = 406 bits (1044), Expect = e-135 Identities = 194/354 (54%), Positives = 258/354 (72%), Gaps = 1/354 (0%) Frame = +2 Query: 245 VGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIA 424 V + K RLD+W+SSR+ GISRAR+QSS+R GLV VN ++K SH+IRAGD ++C I+ Sbjct: 70 VNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKVSHVIRAGDKVNCTIS 129 Query: 425 PLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGC 604 L PLRAEPE++ L NKPAHMVVHPAPGN +GTLVNGILHHC LP++ Sbjct: 130 ELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVAL 189 Query: 605 XXXXXXXXXXXXXXXEVNMPLLDC-SLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLA 781 +C + E+ +RPGIVHR+DKGTSGLLV+AK+E++HA L+ Sbjct: 190 PNRDSEEDDISDDEFNSFAAGQNCGTCETNIRPGIVHRLDKGTSGLLVVAKDEHSHAHLS 249 Query: 782 EQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRY 961 EQF+ H++ R Y+SLT GVP GR+E+ + RDPNNR+RM AVP + QAR AASRY Sbjct: 250 EQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQARHAASRY 309 Query: 962 AVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPS 1141 V + L GG +VEWRLETGRTHQIR HA+++G PLLGDE+YGGTK +ALS L+ ++PS Sbjct: 310 KVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLRPRIPS 369 Query: 1142 KYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303 +HG++++++S ++RPCLHA +LGF HP+TG+ V FSC PP+DF ++L++LRK+ Sbjct: 370 SHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSCQPPEDFAEILSWLRKI 423 >XP_015887376.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Ziziphus jujuba] Length = 442 Score = 404 bits (1039), Expect = e-134 Identities = 213/424 (50%), Positives = 280/424 (66%), Gaps = 16/424 (3%) Frame = +2 Query: 77 LSSPLSYLVSFPPR-RITVS---ASTSRRVLTRAVISTTPTPAKTIAVCKEEHDKG---- 232 ++SP + V FPP +IT ASTSR ++R + +T+ + +I+ +E G Sbjct: 15 VTSPSLFFVFFPPNPKITACPPFASTSR--ISRILRATSTSTGVSISDGNDEALAGHRNN 72 Query: 233 -----FNDKVGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRA 397 + V + K RLD+W+SSR+ GISRAR+QSS+R GLV VNG ++K SH ++A Sbjct: 73 YSGVRLEETVAVDSRKLRLDSWISSRVSGISRARVQSSIRSGLVSVNGRIVDKVSHNVKA 132 Query: 398 GDIISCNIAPLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILH 577 GD ++C I+ L PLRAEPE + L NKPAHMVVHPAPGN GTLVNGILH Sbjct: 133 GDRVNCTISELQPLRAEPENIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVNGILH 192 Query: 578 HCGLPSIGCXXXXXXXXXXXXXXXEVNMPLLDCS---LESAVRPGIVHRIDKGTSGLLVI 748 HC LP++ + +D S +++VRPGIVHR+DKGTSGLLV+ Sbjct: 193 HCSLPTVAFSNHDGLSDSEDNCDDGLGYFSVDQSSSTCQASVRPGIVHRLDKGTSGLLVV 252 Query: 749 AKNENAHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNT 928 AKNE +HA L++QF+ HT+ R Y+SLT GVP+ GR+++ I RD NNR+RM A+P Sbjct: 253 AKNELSHAHLSDQFKLHTIHRVYISLTSGVPSPLAGRVDIPIGRDSNNRIRMTAIPGPIK 312 Query: 929 RYQARFAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGL 1108 Q R AASRY V + L GG +VEWRLETGRTHQIR HA+H+G PLLGDE+YGGTK + Sbjct: 313 SKQGRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDELYGGTKSM 372 Query: 1109 ALSRLKCKLPSKYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLN 1288 ALS L + PS HG++S+++S ERPCLHA +L F+HP TG+ + FSCPPP DF ++LN Sbjct: 373 ALSLLWPRTPSSCHGQLSQLVSEFERPCLHAMALRFKHPHTGKNIHFSCPPPSDFAEILN 432 Query: 1289 YLRK 1300 LRK Sbjct: 433 QLRK 436 >XP_016687702.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like isoform X1 [Gossypium hirsutum] Length = 432 Score = 402 bits (1032), Expect = e-133 Identities = 205/392 (52%), Positives = 270/392 (68%), Gaps = 4/392 (1%) Frame = +2 Query: 140 TSRRVLTRAVISTTPT----PAKTIAVCKEEHDKGFNDKVGEGTPKQRLDAWLSSRMEGI 307 T R+L IST+ T P +T + + K G K RLD+W+SSR++GI Sbjct: 36 TISRILRATSISTSATKHEEPIRTSYAGVQLEETVDETKQG----KLRLDSWISSRIQGI 91 Query: 308 SRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLRAEPEEMQLXXXXXXX 487 SRAR+QSS++ GLV VNG ++K SH +RAGD + C I+ L PL+AEPE++ L Sbjct: 92 SRARVQSSIKSGLVKVNGRVVDKVSHSLRAGDKVDCVISDLQPLKAEPEDIPLDIVFEDD 151 Query: 488 XXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXXXXXXXXXXXXXEVNMPL 667 NKP+HMVVHPAPGN NGTLVNGILHHC LP++ E ++ Sbjct: 152 HVLVVNKPSHMVVHPAPGNANGTLVNGILHHCSLPTVASSEKEVLFDTQDMSDDEQDIFH 211 Query: 668 LDCSLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLAEQFEKHTVFRKYVSLTCGVPAE 847 + ++VRPGIVHR+DKGTSGLLV+AK+E +HA L+EQF++HT+ R Y+SLTCGVP+ Sbjct: 212 GASAGAASVRPGIVHRLDKGTSGLLVVAKDEYSHAHLSEQFKQHTIQRVYISLTCGVPSA 271 Query: 848 RDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAVTKELCKGGVGVVEWRLETGR 1027 GR+++ I RD NNR+RM AVP + QAR AASRY V + L GG +V+WRLETGR Sbjct: 272 SSGRVDIPIGRDSNNRIRMVAVPGLSHHGQARHAASRYKVIEVLAGGGSALVQWRLETGR 331 Query: 1028 THQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKYHGEISKVISSIERPCLHAHS 1207 THQIR HA+++G PLLGDE+YGGTK +ALS L+ + P Y+ E+S+++S +ERP LHA Sbjct: 332 THQIRAHAKYMGIPLLGDEVYGGTKNMALSLLRPRTPPYYNDELSRLVSRLERPYLHALV 391 Query: 1208 LGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303 LGFEHP +GEK+ FSCPPP DF ++LN+LRK+ Sbjct: 392 LGFEHPHSGEKMRFSCPPPPDFGEILNHLRKI 423 >XP_012444688.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Gossypium raimondii] Length = 432 Score = 402 bits (1032), Expect = e-133 Identities = 205/392 (52%), Positives = 270/392 (68%), Gaps = 4/392 (1%) Frame = +2 Query: 140 TSRRVLTRAVISTTPT----PAKTIAVCKEEHDKGFNDKVGEGTPKQRLDAWLSSRMEGI 307 T R+L IST+ T P +T + + K G K RLD+W+SSR++GI Sbjct: 36 TISRILRATSISTSATKHEEPIRTSYAGVQLEETVDETKQG----KLRLDSWISSRIQGI 91 Query: 308 SRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLRAEPEEMQLXXXXXXX 487 SRAR+QSS++ GLV VNG ++K SH +RAGD + C I+ L PL+AEPE++ L Sbjct: 92 SRARVQSSIKSGLVKVNGRVVDKVSHSLRAGDKVDCVISDLQPLKAEPEDIPLDIVFEDD 151 Query: 488 XXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXXXXXXXXXXXXXEVNMPL 667 NKP+HMVVHPAPGN NGTLVNGILHHC LP++ E ++ Sbjct: 152 HVLVVNKPSHMVVHPAPGNANGTLVNGILHHCSLPTVASSEKEVLFDTEDMSDDEQDIFH 211 Query: 668 LDCSLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLAEQFEKHTVFRKYVSLTCGVPAE 847 + ++VRPGIVHR+DKGTSGLLV+AK+E +HA L+EQF++HT+ R Y+SLTCGVP+ Sbjct: 212 GASAGAASVRPGIVHRLDKGTSGLLVVAKDEYSHAHLSEQFKQHTIQRVYISLTCGVPSA 271 Query: 848 RDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAVTKELCKGGVGVVEWRLETGR 1027 GR+++ I RD NNR+RM AVP + QAR AASRY V + L GG +V+WRLETGR Sbjct: 272 ASGRVDIPIGRDSNNRIRMVAVPGLSHHGQARHAASRYKVIEVLAGGGSALVQWRLETGR 331 Query: 1028 THQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKYHGEISKVISSIERPCLHAHS 1207 THQIR HA+++G PLLGDE+YGGTK +ALS L+ + P Y+ E+S+++S +ERP LHA Sbjct: 332 THQIRAHAKYMGIPLLGDEVYGGTKNMALSLLRPRTPPYYNDELSRLVSRLERPYLHALV 391 Query: 1208 LGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303 LGFEHP +GEK+ FSCPPP DF ++LN+LRK+ Sbjct: 392 LGFEHPHSGEKMRFSCPPPPDFGEILNHLRKI 423 >XP_006342081.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2 [Solanum tuberosum] Length = 431 Score = 401 bits (1031), Expect = e-133 Identities = 198/358 (55%), Positives = 256/358 (71%), Gaps = 9/358 (2%) Frame = +2 Query: 257 TPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVP 436 T K RLD+W+SSR++G+SRAR+QSS+R GLV VNG +K SH+++ GD + C IA L P Sbjct: 68 TGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLKP 127 Query: 437 LRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXX 616 LRAEPE++ L NKPAHMVVHPAPGN GTLV+GILHHC LP+I Sbjct: 128 LRAEPEDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTISFLGEE 187 Query: 617 XXXXXXXXXXXEVNM------PLLDCS---LESAVRPGIVHRIDKGTSGLLVIAKNENAH 769 E+N+ P D S ES+VRPGIVHR+DKGTSGLLV+AKNEN+ Sbjct: 188 VLSDAEDASDDELNVFSGNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNENSL 247 Query: 770 ACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFA 949 A LAEQF+KHT+ R YVS+TCGVPA GR+++ I RD NNR+RM A+P + ++R A Sbjct: 248 ASLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHA 307 Query: 950 ASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKC 1129 SRY V ++L +GG +VEWRLETGRTHQIR HA+++G PL+GDE+YGGTK +ALS L+ Sbjct: 308 VSRYKVIEKLARGGSALVEWRLETGRTHQIRAHAKYLGIPLMGDEVYGGTKNMALSLLQP 367 Query: 1130 KLPSKYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303 K P +HG++S+++S I+RPCLHA +LGF HP TGE + F+ PP DF ++L+YLR + Sbjct: 368 KTPPMFHGKLSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSYLRAI 425 >XP_017621288.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2 [Gossypium arboreum] Length = 432 Score = 401 bits (1030), Expect = e-132 Identities = 206/394 (52%), Positives = 273/394 (69%), Gaps = 6/394 (1%) Frame = +2 Query: 140 TSRRVLTRAVISTT------PTPAKTIAVCKEEHDKGFNDKVGEGTPKQRLDAWLSSRME 301 T R+L IST+ PT V EE D+ +G K RLD+W+SSR++ Sbjct: 36 TISRILRATSISTSAAKHEEPTRTSYAGVQLEETV----DETKQG--KLRLDSWISSRIQ 89 Query: 302 GISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLRAEPEEMQLXXXXX 481 GISRAR+QSS++ GLV VNG ++K SH +RAGD ++C I+ L PL+AEPE++ L Sbjct: 90 GISRARVQSSIKSGLVKVNGRVVDKVSHSLRAGDKVNCVISDLQPLKAEPEDIPLDIVFE 149 Query: 482 XXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXXXXXXXXXXXXXEVNM 661 NKP+HMVVHPAPGN NGTLVNGILHHC LP++ E ++ Sbjct: 150 DDHVLVVNKPSHMVVHPAPGNANGTLVNGILHHCSLPTVASSEKEVLFDTEDMSDDEQDI 209 Query: 662 PLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLAEQFEKHTVFRKYVSLTCGVP 841 + ++VRPGIVHR+DKGTSGLLV+AK+E++HA L+EQF++HT+ R Y+SLTCGVP Sbjct: 210 FHGASAGAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHTIQRVYISLTCGVP 269 Query: 842 AERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAVTKELCKGGVGVVEWRLET 1021 + GR+++ I RD NNR+RM AVP + +AR AASRY V + L GG +V+WRLET Sbjct: 270 SASAGRVDIPIGRDSNNRIRMAAVPGLSHHGRARHAASRYKVIEVLAGGGSALVQWRLET 329 Query: 1022 GRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKYHGEISKVISSIERPCLHA 1201 GRTHQIR HA+++G PLLGDE+YGGTK +ALS L+ + P Y+ E+S+++S +ERP LHA Sbjct: 330 GRTHQIRAHAKYMGIPLLGDEVYGGTKNMALSLLRPRTPPYYNDELSRLVSRLERPYLHA 389 Query: 1202 HSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303 LGFEHP +GEK+ FSCPPP DF ++LN+LRK+ Sbjct: 390 LVLGFEHPHSGEKMRFSCPPPPDFGEILNHLRKI 423 >KHG01344.1 hypothetical protein F383_22314 [Gossypium arboreum] Length = 446 Score = 400 bits (1029), Expect = e-132 Identities = 206/394 (52%), Positives = 273/394 (69%), Gaps = 6/394 (1%) Frame = +2 Query: 140 TSRRVLTRAVISTT------PTPAKTIAVCKEEHDKGFNDKVGEGTPKQRLDAWLSSRME 301 T R+L IST+ PT V EE D+ +G K RLD+W+SSR++ Sbjct: 36 TISRILRATSISTSAAKHEEPTRTSYAGVQLEETV----DETKQG--KLRLDSWISSRIQ 89 Query: 302 GISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLRAEPEEMQLXXXXX 481 GISRAR+QSS++ GLV VNG ++K SH +RAGD ++C I+ L PL+AEPE++ L Sbjct: 90 GISRARVQSSIKSGLVKVNGRVVDKVSHSLRAGDKVNCVISDLQPLKAEPEDIPLDIVFE 149 Query: 482 XXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXXXXXXXXXXXXXEVNM 661 NKP+HMVVHPAPGN NGTLVNGILHHC LP++ E ++ Sbjct: 150 DDHVLVVNKPSHMVVHPAPGNANGTLVNGILHHCSLPTVASSEKEVLFDTEDMSDDEQDI 209 Query: 662 PLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLAEQFEKHTVFRKYVSLTCGVP 841 + ++VRPGIVHR+DKGTSGLLV+AK+E++HA L+EQF++HT+ R Y+SLTCGVP Sbjct: 210 FHGASAGAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHTIQRVYISLTCGVP 269 Query: 842 AERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAVTKELCKGGVGVVEWRLET 1021 + GR+++ I RD NNR+RM AVP + +AR AASRY V + L GG +V+WRLET Sbjct: 270 SASAGRVDIPIGRDSNNRIRMVAVPGLSHHGRARHAASRYKVIEVLAGGGSALVQWRLET 329 Query: 1022 GRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKYHGEISKVISSIERPCLHA 1201 GRTHQIR HA+++G PLLGDE+YGGTK +ALS L+ + P Y+ E+S+++S +ERP LHA Sbjct: 330 GRTHQIRAHAKYMGIPLLGDEVYGGTKNMALSLLRPRTPPYYNDELSRLVSRLERPYLHA 389 Query: 1202 HSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303 LGFEHP +GEK+ FSCPPP DF ++LN+LRK+ Sbjct: 390 LVLGFEHPHSGEKMRFSCPPPPDFGEILNHLRKI 423 >XP_010320443.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2 [Solanum lycopersicum] Length = 431 Score = 400 bits (1027), Expect = e-132 Identities = 199/365 (54%), Positives = 257/365 (70%), Gaps = 9/365 (2%) Frame = +2 Query: 239 DKVGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCN 418 + V T K RLD+W+SSR++G+SRAR+QSS+R GLV VNG +K SH+++ GD + C Sbjct: 62 ETVDSKTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCT 121 Query: 419 IAPLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSI 598 IA L PLRAEPE++ L NKPAHMVVHPAPGN GTLV+GILHHC LP++ Sbjct: 122 IADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTV 181 Query: 599 GCXXXXXXXXXXXXXXXEVNM------PLLDCS---LESAVRPGIVHRIDKGTSGLLVIA 751 E+N+ P D S ES+VRPGIVHR+DKGTSGLLV+A Sbjct: 182 SFPGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVA 241 Query: 752 KNENAHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTR 931 KNE++ A LAEQF+KHT+ R YVS+TCGVPA GR+++ I RD NNR+RM A+P + Sbjct: 242 KNEHSLADLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKS 301 Query: 932 YQARFAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLA 1111 ++R A SRY V ++L GG +VEWRLETGRTHQIR HA+H+G PL+GDE+YGGTK +A Sbjct: 302 GKSRHAVSRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMA 361 Query: 1112 LSRLKCKLPSKYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNY 1291 LS L+ K P +HGE+S+++S I+RPCLHA +LGF HP TGE + F+ PP DF ++L+ Sbjct: 362 LSLLQPKTPPMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSE 421 Query: 1292 LRKLK 1306 LR +K Sbjct: 422 LRAIK 426 >XP_004238386.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1 [Solanum lycopersicum] Length = 436 Score = 400 bits (1027), Expect = e-132 Identities = 199/365 (54%), Positives = 257/365 (70%), Gaps = 9/365 (2%) Frame = +2 Query: 239 DKVGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCN 418 + V T K RLD+W+SSR++G+SRAR+QSS+R GLV VNG +K SH+++ GD + C Sbjct: 62 ETVDSKTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCT 121 Query: 419 IAPLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSI 598 IA L PLRAEPE++ L NKPAHMVVHPAPGN GTLV+GILHHC LP++ Sbjct: 122 IADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTV 181 Query: 599 GCXXXXXXXXXXXXXXXEVNM------PLLDCS---LESAVRPGIVHRIDKGTSGLLVIA 751 E+N+ P D S ES+VRPGIVHR+DKGTSGLLV+A Sbjct: 182 SFPGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVA 241 Query: 752 KNENAHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTR 931 KNE++ A LAEQF+KHT+ R YVS+TCGVPA GR+++ I RD NNR+RM A+P + Sbjct: 242 KNEHSLADLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKS 301 Query: 932 YQARFAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLA 1111 ++R A SRY V ++L GG +VEWRLETGRTHQIR HA+H+G PL+GDE+YGGTK +A Sbjct: 302 GKSRHAVSRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMA 361 Query: 1112 LSRLKCKLPSKYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNY 1291 LS L+ K P +HGE+S+++S I+RPCLHA +LGF HP TGE + F+ PP DF ++L+ Sbjct: 362 LSLLQPKTPPMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSE 421 Query: 1292 LRKLK 1306 LR +K Sbjct: 422 LRAIK 426 >XP_016725957.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Gossypium hirsutum] Length = 432 Score = 399 bits (1026), Expect = e-132 Identities = 193/347 (55%), Positives = 256/347 (73%) Frame = +2 Query: 263 KQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLR 442 K RLD+W+SSR++GISRAR+QSS++ GLV VNG ++K SH +RAGD ++C I+ L PL+ Sbjct: 77 KLRLDSWISSRIQGISRARVQSSIKSGLVKVNGRVVDKVSHSLRAGDKVNCVISDLQPLK 136 Query: 443 AEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXXXX 622 AEPE++ L NKP+HMVVHPAPGN NGTLVNGILHHC LP++ Sbjct: 137 AEPEDIPLDIVFEDDHVLVVNKPSHMVVHPAPGNANGTLVNGILHHCSLPTVASSEKEVL 196 Query: 623 XXXXXXXXXEVNMPLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLAEQFEKHT 802 E ++ + ++VRPGIVHR+DKGTSGLLV+AK+E++HA L+EQF++HT Sbjct: 197 FDTEDMSDDEQDIFHGASAGPASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHT 256 Query: 803 VFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAVTKELC 982 + R Y+SLTCGVP+ GR+++ I RD NNR+RM AVP + +AR AASRY V + L Sbjct: 257 IQRVYISLTCGVPSASAGRVDIPIGRDSNNRIRMVAVPGLSHHGRARHAASRYKVIEVLA 316 Query: 983 KGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKYHGEIS 1162 GG +V+WRLETGRTHQIR HA+++G PLLGDE+YGGTK +ALS L+ + P Y+ E+S Sbjct: 317 GGGSALVQWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMALSLLRPRTPPYYNDELS 376 Query: 1163 KVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303 +++S +ERP LHA LGFEHP +GEK+ FSCPPP DF ++LN+LRK+ Sbjct: 377 RLVSRLERPYLHALVLGFEHPHSGEKMRFSCPPPPDFGEILNHLRKI 423 >XP_016568333.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2 [Capsicum annuum] Length = 424 Score = 399 bits (1024), Expect = e-132 Identities = 196/357 (54%), Positives = 253/357 (70%), Gaps = 2/357 (0%) Frame = +2 Query: 239 DKVGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCN 418 + V T K RLD W+SSR++G+SRAR+QSS+R GLV VNG +K SH ++AGD ++C Sbjct: 62 ETVDGNTGKLRLDCWISSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHKVKAGDKVNCT 121 Query: 419 IAPLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSI 598 IA L PLRAEPE++ L NKPAHMVVHPAPGN GTLV+GILHHC LP+ Sbjct: 122 IADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTC 181 Query: 599 GCXXXXXXXXXXXXXXXEVNMPLLDCSL--ESAVRPGIVHRIDKGTSGLLVIAKNENAHA 772 E+N+ D S+ E +VRPGIVHR+DKGTSGLLV+AKNE++ Sbjct: 182 SFLGEEVLSDVEDASDDELNVSPYDSSVMCEPSVRPGIVHRLDKGTSGLLVVAKNEHSLV 241 Query: 773 CLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAA 952 LAEQF+KHT+ R YVS+TCGVP GR+++ I RD NNR+RM A+P S ++R A Sbjct: 242 DLAEQFKKHTIKRVYVSITCGVPTSVSGRVDIPIGRDSNNRIRMAAIPGSPKSGKSRHAV 301 Query: 953 SRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCK 1132 SRY V +EL GG +VEWRLETGRTHQIR HA+++G PL+GDE+YGGTK +ALS L+ K Sbjct: 302 SRYKVIEELAGGGSALVEWRLETGRTHQIRAHAKYLGIPLMGDEVYGGTKNMALSLLQPK 361 Query: 1133 LPSKYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303 P ++HG++S+++S IERPCLHA +LGF HP TGE + F+ PP DF ++L+ LR + Sbjct: 362 TPPRFHGKLSQLVSRIERPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSELRAI 418 >XP_016568332.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1 [Capsicum annuum] Length = 429 Score = 399 bits (1024), Expect = e-132 Identities = 196/357 (54%), Positives = 253/357 (70%), Gaps = 2/357 (0%) Frame = +2 Query: 239 DKVGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCN 418 + V T K RLD W+SSR++G+SRAR+QSS+R GLV VNG +K SH ++AGD ++C Sbjct: 62 ETVDGNTGKLRLDCWISSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHKVKAGDKVNCT 121 Query: 419 IAPLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSI 598 IA L PLRAEPE++ L NKPAHMVVHPAPGN GTLV+GILHHC LP+ Sbjct: 122 IADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTC 181 Query: 599 GCXXXXXXXXXXXXXXXEVNMPLLDCSL--ESAVRPGIVHRIDKGTSGLLVIAKNENAHA 772 E+N+ D S+ E +VRPGIVHR+DKGTSGLLV+AKNE++ Sbjct: 182 SFLGEEVLSDVEDASDDELNVSPYDSSVMCEPSVRPGIVHRLDKGTSGLLVVAKNEHSLV 241 Query: 773 CLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAA 952 LAEQF+KHT+ R YVS+TCGVP GR+++ I RD NNR+RM A+P S ++R A Sbjct: 242 DLAEQFKKHTIKRVYVSITCGVPTSVSGRVDIPIGRDSNNRIRMAAIPGSPKSGKSRHAV 301 Query: 953 SRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCK 1132 SRY V +EL GG +VEWRLETGRTHQIR HA+++G PL+GDE+YGGTK +ALS L+ K Sbjct: 302 SRYKVIEELAGGGSALVEWRLETGRTHQIRAHAKYLGIPLMGDEVYGGTKNMALSLLQPK 361 Query: 1133 LPSKYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303 P ++HG++S+++S IERPCLHA +LGF HP TGE + F+ PP DF ++L+ LR + Sbjct: 362 TPPRFHGKLSQLVSRIERPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSELRAI 418 >XP_002519370.2 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2 [Ricinus communis] Length = 417 Score = 398 bits (1022), Expect = e-131 Identities = 194/347 (55%), Positives = 249/347 (71%) Frame = +2 Query: 263 KQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLR 442 K RLD+W+SSR+ GISRAR+QSS++ GLV VNG ++K SH ++ GD ++C I+ L PLR Sbjct: 71 KLRLDSWISSRISGISRARVQSSIKSGLVSVNGRVVDKVSHNVKFGDKVTCTISELQPLR 130 Query: 443 AEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXXXX 622 AEPE+M L NKP HMVVHPAPGNP GTLVNGILHHC LP++ Sbjct: 131 AEPEDMPLDIVYEDEHLLVVNKPPHMVVHPAPGNPTGTLVNGILHHCNLPTVAISSQEVL 190 Query: 623 XXXXXXXXXEVNMPLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLAEQFEKHT 802 + C ES++RPGIVHR+DKGTSGLLV+AK+E+AHA L+EQF++HT Sbjct: 191 SDAEDRSDDDERSYSSSC--ESSIRPGIVHRLDKGTSGLLVVAKDEHAHAHLSEQFKQHT 248 Query: 803 VFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAVTKELC 982 + R Y+SLT GVP+ GRI++ I RD NNR+RM A+P + +AR AASR+ V + L Sbjct: 249 IQRVYISLTSGVPSALTGRIDIPIGRDVNNRIRMTAIPGPIKQGRARHAASRFKVVETLA 308 Query: 983 KGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKYHGEIS 1162 GG +VEWRLETGRTHQIR HA++IG PLLGDE+YGGT+ +ALS L+ ++PS H E+S Sbjct: 309 GGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDEVYGGTRSMALSLLRPRIPSTCHSELS 368 Query: 1163 KVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303 ++S +ERPCLHA +LGF HP T E++ FSCPPP DF D+L LRK+ Sbjct: 369 LLLSKLERPCLHALALGFTHPCTREEIHFSCPPPPDFSDILCLLRKM 415 >XP_006473714.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1 [Citrus sinensis] Length = 421 Score = 396 bits (1018), Expect = e-131 Identities = 193/348 (55%), Positives = 250/348 (71%), Gaps = 1/348 (0%) Frame = +2 Query: 263 KQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLR 442 K RLDAW+SSR++GISRAR+QSS+R GLV +NG ++K SH ++ GD+++C I+ L PLR Sbjct: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129 Query: 443 AEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXXXX 622 AE E++ L NKPAHMVVHPAPGN GTLVNGILHHC LP++ Sbjct: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189 Query: 623 XXXXXXXXXEVNMPLLDCSLESA-VRPGIVHRIDKGTSGLLVIAKNENAHACLAEQFEKH 799 E S+ A +RPGIVHR+DKGTSGLLV+AK+E++HA L+EQF+ H Sbjct: 190 SDAEDISDDEE----FSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH 245 Query: 800 TVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAVTKEL 979 T+ R Y+SLT GVP++ GRIE+ I+RDPNNR+RM A+P SN QAR AASRY V + L Sbjct: 246 TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEIL 305 Query: 980 CKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKYHGEI 1159 GG +VEWRLETGRTHQIR HA+++G PLLGDE+YGGTK +A S L+ + HG++ Sbjct: 306 AGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAKSLLQPRTAPGSHGKV 365 Query: 1160 SKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303 K++S ++RPCLHA +LGF HP T EK+ FSCPPP DF ++L+ LR++ Sbjct: 366 LKLVSGLQRPCLHAVALGFTHPHTREKIQFSCPPPADFAEILSQLREI 413