BLASTX nr result

ID: Ephedra29_contig00017501 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra29_contig00017501
         (1582 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_011628926.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   417   e-139
ERM96267.1 hypothetical protein AMTR_s00001p00157430 [Amborella ...   417   e-139
XP_010241330.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   410   e-136
XP_010241329.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   410   e-136
XP_010533976.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   409   e-136
XP_010241328.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   410   e-136
XP_003634352.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   406   e-135
XP_015887376.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   404   e-134
XP_016687702.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   402   e-133
XP_012444688.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   402   e-133
XP_006342081.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   401   e-133
XP_017621288.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   401   e-132
KHG01344.1 hypothetical protein F383_22314 [Gossypium arboreum]       400   e-132
XP_010320443.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   400   e-132
XP_004238386.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   400   e-132
XP_016725957.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   399   e-132
XP_016568333.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   399   e-132
XP_016568332.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   399   e-132
XP_002519370.2 PREDICTED: RNA pseudouridine synthase 2, chloropl...   398   e-131
XP_006473714.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   396   e-131

>XP_011628926.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Amborella
            trichopoda]
          Length = 437

 Score =  417 bits (1073), Expect = e-139
 Identities = 201/361 (55%), Positives = 259/361 (71%), Gaps = 3/361 (0%)
 Frame = +2

Query: 233  FNDKVGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIIS 412
            F   V  G+ K+R+D+WLS+R+  +SRARIQSS+RQG V VNG  I K SHI++ GD++ 
Sbjct: 72   FESSVAVGSKKERIDSWLSARIGDVSRARIQSSIRQGFVKVNGLPITKVSHIVKVGDMVD 131

Query: 413  CNIAPLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLP 592
            C ++ L PL+AEPE+M L            NKPAHMVVHPAPGN NGTLVNGILHHC LP
Sbjct: 132  CTVSHLQPLKAEPEDMPLDIIYEDDHVLVVNKPAHMVVHPAPGNANGTLVNGILHHCTLP 191

Query: 593  SIGCXXXXXXXXXXXXXXXEVNM---PLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNEN 763
            + G                 + M     +     S++RPGIVHR+DKGTSGLLV+AKNE+
Sbjct: 192  AFGLPDGELTSESDDECDNGLTMFNPDPISTQCRSSIRPGIVHRLDKGTSGLLVVAKNEH 251

Query: 764  AHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQAR 943
            +HA L+EQF+ HT+ R+Y+SLTCGVP+  +G IE+ IARD NNR+RM AV   N   +AR
Sbjct: 252  SHAHLSEQFKLHTIHRQYISLTCGVPSPSNGCIEIPIARDMNNRIRMAAVSGQNNTRKAR 311

Query: 944  FAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRL 1123
             A SRY V + L  GG  +VEWRL+TGRTHQIRVHA++IG PLLGDE+YGGTK +ALSRL
Sbjct: 312  LATSRYHVMEVLAGGGSALVEWRLQTGRTHQIRVHAKYIGNPLLGDEVYGGTKSMALSRL 371

Query: 1124 KCKLPSKYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303
            + + PS YHG +S+++S+++RPCLHA SLGF+HP + E VLF+CPPP DF +VL  L+ +
Sbjct: 372  RPRTPSHYHGPLSQLVSNLQRPCLHAFSLGFKHPHSKENVLFTCPPPPDFAEVLRQLQSI 431

Query: 1304 K 1306
            +
Sbjct: 432  R 432


>ERM96267.1 hypothetical protein AMTR_s00001p00157430 [Amborella trichopoda]
          Length = 452

 Score =  417 bits (1073), Expect = e-139
 Identities = 201/361 (55%), Positives = 259/361 (71%), Gaps = 3/361 (0%)
 Frame = +2

Query: 233  FNDKVGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIIS 412
            F   V  G+ K+R+D+WLS+R+  +SRARIQSS+RQG V VNG  I K SHI++ GD++ 
Sbjct: 72   FESSVAVGSKKERIDSWLSARIGDVSRARIQSSIRQGFVKVNGLPITKVSHIVKVGDMVD 131

Query: 413  CNIAPLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLP 592
            C ++ L PL+AEPE+M L            NKPAHMVVHPAPGN NGTLVNGILHHC LP
Sbjct: 132  CTVSHLQPLKAEPEDMPLDIIYEDDHVLVVNKPAHMVVHPAPGNANGTLVNGILHHCTLP 191

Query: 593  SIGCXXXXXXXXXXXXXXXEVNM---PLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNEN 763
            + G                 + M     +     S++RPGIVHR+DKGTSGLLV+AKNE+
Sbjct: 192  AFGLPDGELTSESDDECDNGLTMFNPDPISTQCRSSIRPGIVHRLDKGTSGLLVVAKNEH 251

Query: 764  AHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQAR 943
            +HA L+EQF+ HT+ R+Y+SLTCGVP+  +G IE+ IARD NNR+RM AV   N   +AR
Sbjct: 252  SHAHLSEQFKLHTIHRQYISLTCGVPSPSNGCIEIPIARDMNNRIRMAAVSGQNNTRKAR 311

Query: 944  FAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRL 1123
             A SRY V + L  GG  +VEWRL+TGRTHQIRVHA++IG PLLGDE+YGGTK +ALSRL
Sbjct: 312  LATSRYHVMEVLAGGGSALVEWRLQTGRTHQIRVHAKYIGNPLLGDEVYGGTKSMALSRL 371

Query: 1124 KCKLPSKYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303
            + + PS YHG +S+++S+++RPCLHA SLGF+HP + E VLF+CPPP DF +VL  L+ +
Sbjct: 372  RPRTPSHYHGPLSQLVSNLQRPCLHAFSLGFKHPHSKENVLFTCPPPPDFAEVLRQLQSI 431

Query: 1304 K 1306
            +
Sbjct: 432  R 432


>XP_010241330.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3
            [Nelumbo nucifera]
          Length = 443

 Score =  410 bits (1055), Expect = e-136
 Identities = 217/420 (51%), Positives = 281/420 (66%), Gaps = 17/420 (4%)
 Frame = +2

Query: 95   YLVSFPPRRITVSASTSR--RVLTRAVISTTPTPAKTIAVCKEEHDKG------FNDKVG 250
            YL+   PR     ASTSR  RVL  +  S+T   A      + ++ +G        D V 
Sbjct: 22   YLLHRSPR-----ASTSRFFRVLNCS-FSSTGESASDYQSSEPQNRRGNFAGVCLEDTVE 75

Query: 251  EGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPL 430
              + K R+D+W+SSR+ GISRAR+QSS++ GLV VNG  I+K SH+IRAGD ++C I  L
Sbjct: 76   ISSVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKVSHVIRAGDKVNCTIKEL 135

Query: 431  VPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXX 610
             PLRAEPE++ L            NKPAHMVVHPAPGN NGTLVNGILHHC LP +    
Sbjct: 136  QPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNGILHHCSLPMVALTN 195

Query: 611  XXXXXXXXXXXXXEVNM---------PLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNEN 763
                         E ++          +     E +VRPGIVHR+DKGTSGLLV+AK+E+
Sbjct: 196  SKVLSETDDISDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLDKGTSGLLVVAKDEH 255

Query: 764  AHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQAR 943
            +HA L+EQF+ HT+ R Y+SLTCGVP+   GRIE+ I RD +NR+RM AVPS N+  QAR
Sbjct: 256  SHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMAAVPSPNSSRQAR 315

Query: 944  FAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRL 1123
             AASRY V + L  GG  +VEWRLETGRTHQIR HA+++G PLLGDE+YGGT+ +ALS L
Sbjct: 316  HAASRYRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLL 375

Query: 1124 KCKLPSKYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303
            + +  S +HG++S+++S ++RPCLHA +LGF+HP TGE + FSCPPP DF +VL+ LR +
Sbjct: 376  RTRSHSSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRSI 435


>XP_010241329.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Nelumbo nucifera]
          Length = 453

 Score =  410 bits (1055), Expect = e-136
 Identities = 217/420 (51%), Positives = 281/420 (66%), Gaps = 17/420 (4%)
 Frame = +2

Query: 95   YLVSFPPRRITVSASTSR--RVLTRAVISTTPTPAKTIAVCKEEHDKG------FNDKVG 250
            YL+   PR     ASTSR  RVL  +  S+T   A      + ++ +G        D V 
Sbjct: 22   YLLHRSPR-----ASTSRFFRVLNCS-FSSTGESASDYQSSEPQNRRGNFAGVCLEDTVE 75

Query: 251  EGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPL 430
              + K R+D+W+SSR+ GISRAR+QSS++ GLV VNG  I+K SH+IRAGD ++C I  L
Sbjct: 76   ISSVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKVSHVIRAGDKVNCTIKEL 135

Query: 431  VPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXX 610
             PLRAEPE++ L            NKPAHMVVHPAPGN NGTLVNGILHHC LP +    
Sbjct: 136  QPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNGILHHCSLPMVALTN 195

Query: 611  XXXXXXXXXXXXXEVNM---------PLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNEN 763
                         E ++          +     E +VRPGIVHR+DKGTSGLLV+AK+E+
Sbjct: 196  SKVLSETDDISDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLDKGTSGLLVVAKDEH 255

Query: 764  AHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQAR 943
            +HA L+EQF+ HT+ R Y+SLTCGVP+   GRIE+ I RD +NR+RM AVPS N+  QAR
Sbjct: 256  SHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMAAVPSPNSSRQAR 315

Query: 944  FAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRL 1123
             AASRY V + L  GG  +VEWRLETGRTHQIR HA+++G PLLGDE+YGGT+ +ALS L
Sbjct: 316  HAASRYRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLL 375

Query: 1124 KCKLPSKYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303
            + +  S +HG++S+++S ++RPCLHA +LGF+HP TGE + FSCPPP DF +VL+ LR +
Sbjct: 376  RTRSHSSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRSI 435


>XP_010533976.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Tarenaya
            hassleriana]
          Length = 435

 Score =  409 bits (1052), Expect = e-136
 Identities = 217/412 (52%), Positives = 275/412 (66%)
 Frame = +2

Query: 68   TTALSSPLSYLVSFPPRRITVSASTSRRVLTRAVISTTPTPAKTIAVCKEEHDKGFNDKV 247
            +++ SS LS L SF PR      S+S    +  V     +P  + A  K      F + V
Sbjct: 24   SSSSSSSLSVLFSFFPRVSRFVRSSSGIPDSDRVRRPEISPRASNAGVK------FQETV 77

Query: 248  GEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAP 427
               T K RLD+W+SSR+ G+SRAR+QSS+R GLV VNG  ++K SH ++AGD++SC I+ 
Sbjct: 78   DVATGKIRLDSWISSRVHGVSRARVQSSIRLGLVCVNGRVVDKVSHNVKAGDMVSCTISE 137

Query: 428  LVPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCX 607
            L PL+AEPE+M L            NKPAHMVVHPAPGNPNGTLVNGILHHC LP +   
Sbjct: 138  LQPLKAEPEDMPLDIVYEDNHVLVVNKPAHMVVHPAPGNPNGTLVNGILHHCSLPIVAYS 197

Query: 608  XXXXXXXXXXXXXXEVNMPLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLAEQ 787
                          E  M     +  ++VRPGIVHR+DKGTSGLLV+AK+E++HA LAEQ
Sbjct: 198  DTEVDPDEEDFSEDEETMS--SSAYSASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQ 255

Query: 788  FEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAV 967
            F++HT+ R YVSLTCGVP+   GRI + I RD NNR+RM A+P  + R +AR AASRY V
Sbjct: 256  FKQHTIERVYVSLTCGVPSPSHGRIVIPIGRDLNNRIRMAAIPGLSNRGRARHAASRYKV 315

Query: 968  TKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKY 1147
             + L  GG  +VEWRLETGRTHQIR HA+++G PLLGDE+YG TK +ALS L+ +     
Sbjct: 316  IEILAGGGSALVEWRLETGRTHQIRAHAKYVGVPLLGDEVYGATKSMALSLLQKRASRND 375

Query: 1148 HGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303
            HG+I +++S ++RPCLHA  LGF+HP TGE V FSCPPP DF + L  LRKL
Sbjct: 376  HGQILELVSRLDRPCLHALVLGFKHPCTGEDVKFSCPPPPDFAETLGMLRKL 427


>XP_010241328.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Nelumbo nucifera]
          Length = 471

 Score =  410 bits (1055), Expect = e-136
 Identities = 217/420 (51%), Positives = 281/420 (66%), Gaps = 17/420 (4%)
 Frame = +2

Query: 95   YLVSFPPRRITVSASTSR--RVLTRAVISTTPTPAKTIAVCKEEHDKG------FNDKVG 250
            YL+   PR     ASTSR  RVL  +  S+T   A      + ++ +G        D V 
Sbjct: 22   YLLHRSPR-----ASTSRFFRVLNCS-FSSTGESASDYQSSEPQNRRGNFAGVCLEDTVE 75

Query: 251  EGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPL 430
              + K R+D+W+SSR+ GISRAR+QSS++ GLV VNG  I+K SH+IRAGD ++C I  L
Sbjct: 76   ISSVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKVSHVIRAGDKVNCTIKEL 135

Query: 431  VPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXX 610
             PLRAEPE++ L            NKPAHMVVHPAPGN NGTLVNGILHHC LP +    
Sbjct: 136  QPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNGILHHCSLPMVALTN 195

Query: 611  XXXXXXXXXXXXXEVNM---------PLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNEN 763
                         E ++          +     E +VRPGIVHR+DKGTSGLLV+AK+E+
Sbjct: 196  SKVLSETDDISDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLDKGTSGLLVVAKDEH 255

Query: 764  AHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQAR 943
            +HA L+EQF+ HT+ R Y+SLTCGVP+   GRIE+ I RD +NR+RM AVPS N+  QAR
Sbjct: 256  SHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMAAVPSPNSSRQAR 315

Query: 944  FAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRL 1123
             AASRY V + L  GG  +VEWRLETGRTHQIR HA+++G PLLGDE+YGGT+ +ALS L
Sbjct: 316  HAASRYRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLL 375

Query: 1124 KCKLPSKYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303
            + +  S +HG++S+++S ++RPCLHA +LGF+HP TGE + FSCPPP DF +VL+ LR +
Sbjct: 376  RTRSHSSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRSI 435


>XP_003634352.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Vitis vinifera] CBI18920.3 unnamed protein product,
            partial [Vitis vinifera]
          Length = 433

 Score =  406 bits (1044), Expect = e-135
 Identities = 194/354 (54%), Positives = 258/354 (72%), Gaps = 1/354 (0%)
 Frame = +2

Query: 245  VGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIA 424
            V   + K RLD+W+SSR+ GISRAR+QSS+R GLV VN   ++K SH+IRAGD ++C I+
Sbjct: 70   VNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKVSHVIRAGDKVNCTIS 129

Query: 425  PLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGC 604
             L PLRAEPE++ L            NKPAHMVVHPAPGN +GTLVNGILHHC LP++  
Sbjct: 130  ELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVAL 189

Query: 605  XXXXXXXXXXXXXXXEVNMPLLDC-SLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLA 781
                                  +C + E+ +RPGIVHR+DKGTSGLLV+AK+E++HA L+
Sbjct: 190  PNRDSEEDDISDDEFNSFAAGQNCGTCETNIRPGIVHRLDKGTSGLLVVAKDEHSHAHLS 249

Query: 782  EQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRY 961
            EQF+ H++ R Y+SLT GVP    GR+E+ + RDPNNR+RM AVP  +   QAR AASRY
Sbjct: 250  EQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQARHAASRY 309

Query: 962  AVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPS 1141
             V + L  GG  +VEWRLETGRTHQIR HA+++G PLLGDE+YGGTK +ALS L+ ++PS
Sbjct: 310  KVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLRPRIPS 369

Query: 1142 KYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303
             +HG++++++S ++RPCLHA +LGF HP+TG+ V FSC PP+DF ++L++LRK+
Sbjct: 370  SHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSCQPPEDFAEILSWLRKI 423


>XP_015887376.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Ziziphus
            jujuba]
          Length = 442

 Score =  404 bits (1039), Expect = e-134
 Identities = 213/424 (50%), Positives = 280/424 (66%), Gaps = 16/424 (3%)
 Frame = +2

Query: 77   LSSPLSYLVSFPPR-RITVS---ASTSRRVLTRAVISTTPTPAKTIAVCKEEHDKG---- 232
            ++SP  + V FPP  +IT     ASTSR  ++R + +T+ +   +I+   +E   G    
Sbjct: 15   VTSPSLFFVFFPPNPKITACPPFASTSR--ISRILRATSTSTGVSISDGNDEALAGHRNN 72

Query: 233  -----FNDKVGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRA 397
                   + V   + K RLD+W+SSR+ GISRAR+QSS+R GLV VNG  ++K SH ++A
Sbjct: 73   YSGVRLEETVAVDSRKLRLDSWISSRVSGISRARVQSSIRSGLVSVNGRIVDKVSHNVKA 132

Query: 398  GDIISCNIAPLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILH 577
            GD ++C I+ L PLRAEPE + L            NKPAHMVVHPAPGN  GTLVNGILH
Sbjct: 133  GDRVNCTISELQPLRAEPENIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVNGILH 192

Query: 578  HCGLPSIGCXXXXXXXXXXXXXXXEVNMPLLDCS---LESAVRPGIVHRIDKGTSGLLVI 748
            HC LP++                  +    +D S    +++VRPGIVHR+DKGTSGLLV+
Sbjct: 193  HCSLPTVAFSNHDGLSDSEDNCDDGLGYFSVDQSSSTCQASVRPGIVHRLDKGTSGLLVV 252

Query: 749  AKNENAHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNT 928
            AKNE +HA L++QF+ HT+ R Y+SLT GVP+   GR+++ I RD NNR+RM A+P    
Sbjct: 253  AKNELSHAHLSDQFKLHTIHRVYISLTSGVPSPLAGRVDIPIGRDSNNRIRMTAIPGPIK 312

Query: 929  RYQARFAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGL 1108
              Q R AASRY V + L  GG  +VEWRLETGRTHQIR HA+H+G PLLGDE+YGGTK +
Sbjct: 313  SKQGRHAASRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDELYGGTKSM 372

Query: 1109 ALSRLKCKLPSKYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLN 1288
            ALS L  + PS  HG++S+++S  ERPCLHA +L F+HP TG+ + FSCPPP DF ++LN
Sbjct: 373  ALSLLWPRTPSSCHGQLSQLVSEFERPCLHAMALRFKHPHTGKNIHFSCPPPSDFAEILN 432

Query: 1289 YLRK 1300
             LRK
Sbjct: 433  QLRK 436


>XP_016687702.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like isoform
            X1 [Gossypium hirsutum]
          Length = 432

 Score =  402 bits (1032), Expect = e-133
 Identities = 205/392 (52%), Positives = 270/392 (68%), Gaps = 4/392 (1%)
 Frame = +2

Query: 140  TSRRVLTRAVISTTPT----PAKTIAVCKEEHDKGFNDKVGEGTPKQRLDAWLSSRMEGI 307
            T  R+L    IST+ T    P +T     +  +     K G    K RLD+W+SSR++GI
Sbjct: 36   TISRILRATSISTSATKHEEPIRTSYAGVQLEETVDETKQG----KLRLDSWISSRIQGI 91

Query: 308  SRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLRAEPEEMQLXXXXXXX 487
            SRAR+QSS++ GLV VNG  ++K SH +RAGD + C I+ L PL+AEPE++ L       
Sbjct: 92   SRARVQSSIKSGLVKVNGRVVDKVSHSLRAGDKVDCVISDLQPLKAEPEDIPLDIVFEDD 151

Query: 488  XXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXXXXXXXXXXXXXEVNMPL 667
                 NKP+HMVVHPAPGN NGTLVNGILHHC LP++                 E ++  
Sbjct: 152  HVLVVNKPSHMVVHPAPGNANGTLVNGILHHCSLPTVASSEKEVLFDTQDMSDDEQDIFH 211

Query: 668  LDCSLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLAEQFEKHTVFRKYVSLTCGVPAE 847
               +  ++VRPGIVHR+DKGTSGLLV+AK+E +HA L+EQF++HT+ R Y+SLTCGVP+ 
Sbjct: 212  GASAGAASVRPGIVHRLDKGTSGLLVVAKDEYSHAHLSEQFKQHTIQRVYISLTCGVPSA 271

Query: 848  RDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAVTKELCKGGVGVVEWRLETGR 1027
              GR+++ I RD NNR+RM AVP  +   QAR AASRY V + L  GG  +V+WRLETGR
Sbjct: 272  SSGRVDIPIGRDSNNRIRMVAVPGLSHHGQARHAASRYKVIEVLAGGGSALVQWRLETGR 331

Query: 1028 THQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKYHGEISKVISSIERPCLHAHS 1207
            THQIR HA+++G PLLGDE+YGGTK +ALS L+ + P  Y+ E+S+++S +ERP LHA  
Sbjct: 332  THQIRAHAKYMGIPLLGDEVYGGTKNMALSLLRPRTPPYYNDELSRLVSRLERPYLHALV 391

Query: 1208 LGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303
            LGFEHP +GEK+ FSCPPP DF ++LN+LRK+
Sbjct: 392  LGFEHPHSGEKMRFSCPPPPDFGEILNHLRKI 423


>XP_012444688.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Gossypium
            raimondii]
          Length = 432

 Score =  402 bits (1032), Expect = e-133
 Identities = 205/392 (52%), Positives = 270/392 (68%), Gaps = 4/392 (1%)
 Frame = +2

Query: 140  TSRRVLTRAVISTTPT----PAKTIAVCKEEHDKGFNDKVGEGTPKQRLDAWLSSRMEGI 307
            T  R+L    IST+ T    P +T     +  +     K G    K RLD+W+SSR++GI
Sbjct: 36   TISRILRATSISTSATKHEEPIRTSYAGVQLEETVDETKQG----KLRLDSWISSRIQGI 91

Query: 308  SRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLRAEPEEMQLXXXXXXX 487
            SRAR+QSS++ GLV VNG  ++K SH +RAGD + C I+ L PL+AEPE++ L       
Sbjct: 92   SRARVQSSIKSGLVKVNGRVVDKVSHSLRAGDKVDCVISDLQPLKAEPEDIPLDIVFEDD 151

Query: 488  XXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXXXXXXXXXXXXXEVNMPL 667
                 NKP+HMVVHPAPGN NGTLVNGILHHC LP++                 E ++  
Sbjct: 152  HVLVVNKPSHMVVHPAPGNANGTLVNGILHHCSLPTVASSEKEVLFDTEDMSDDEQDIFH 211

Query: 668  LDCSLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLAEQFEKHTVFRKYVSLTCGVPAE 847
               +  ++VRPGIVHR+DKGTSGLLV+AK+E +HA L+EQF++HT+ R Y+SLTCGVP+ 
Sbjct: 212  GASAGAASVRPGIVHRLDKGTSGLLVVAKDEYSHAHLSEQFKQHTIQRVYISLTCGVPSA 271

Query: 848  RDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAVTKELCKGGVGVVEWRLETGR 1027
              GR+++ I RD NNR+RM AVP  +   QAR AASRY V + L  GG  +V+WRLETGR
Sbjct: 272  ASGRVDIPIGRDSNNRIRMVAVPGLSHHGQARHAASRYKVIEVLAGGGSALVQWRLETGR 331

Query: 1028 THQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKYHGEISKVISSIERPCLHAHS 1207
            THQIR HA+++G PLLGDE+YGGTK +ALS L+ + P  Y+ E+S+++S +ERP LHA  
Sbjct: 332  THQIRAHAKYMGIPLLGDEVYGGTKNMALSLLRPRTPPYYNDELSRLVSRLERPYLHALV 391

Query: 1208 LGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303
            LGFEHP +GEK+ FSCPPP DF ++LN+LRK+
Sbjct: 392  LGFEHPHSGEKMRFSCPPPPDFGEILNHLRKI 423


>XP_006342081.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Solanum tuberosum]
          Length = 431

 Score =  401 bits (1031), Expect = e-133
 Identities = 198/358 (55%), Positives = 256/358 (71%), Gaps = 9/358 (2%)
 Frame = +2

Query: 257  TPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVP 436
            T K RLD+W+SSR++G+SRAR+QSS+R GLV VNG   +K SH+++ GD + C IA L P
Sbjct: 68   TGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLKP 127

Query: 437  LRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXX 616
            LRAEPE++ L            NKPAHMVVHPAPGN  GTLV+GILHHC LP+I      
Sbjct: 128  LRAEPEDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTISFLGEE 187

Query: 617  XXXXXXXXXXXEVNM------PLLDCS---LESAVRPGIVHRIDKGTSGLLVIAKNENAH 769
                       E+N+      P  D S    ES+VRPGIVHR+DKGTSGLLV+AKNEN+ 
Sbjct: 188  VLSDAEDASDDELNVFSGNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNENSL 247

Query: 770  ACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFA 949
            A LAEQF+KHT+ R YVS+TCGVPA   GR+++ I RD NNR+RM A+P +    ++R A
Sbjct: 248  ASLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHA 307

Query: 950  ASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKC 1129
             SRY V ++L +GG  +VEWRLETGRTHQIR HA+++G PL+GDE+YGGTK +ALS L+ 
Sbjct: 308  VSRYKVIEKLARGGSALVEWRLETGRTHQIRAHAKYLGIPLMGDEVYGGTKNMALSLLQP 367

Query: 1130 KLPSKYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303
            K P  +HG++S+++S I+RPCLHA +LGF HP TGE + F+  PP DF ++L+YLR +
Sbjct: 368  KTPPMFHGKLSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSYLRAI 425


>XP_017621288.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Gossypium arboreum]
          Length = 432

 Score =  401 bits (1030), Expect = e-132
 Identities = 206/394 (52%), Positives = 273/394 (69%), Gaps = 6/394 (1%)
 Frame = +2

Query: 140  TSRRVLTRAVISTT------PTPAKTIAVCKEEHDKGFNDKVGEGTPKQRLDAWLSSRME 301
            T  R+L    IST+      PT      V  EE      D+  +G  K RLD+W+SSR++
Sbjct: 36   TISRILRATSISTSAAKHEEPTRTSYAGVQLEETV----DETKQG--KLRLDSWISSRIQ 89

Query: 302  GISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLRAEPEEMQLXXXXX 481
            GISRAR+QSS++ GLV VNG  ++K SH +RAGD ++C I+ L PL+AEPE++ L     
Sbjct: 90   GISRARVQSSIKSGLVKVNGRVVDKVSHSLRAGDKVNCVISDLQPLKAEPEDIPLDIVFE 149

Query: 482  XXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXXXXXXXXXXXXXEVNM 661
                   NKP+HMVVHPAPGN NGTLVNGILHHC LP++                 E ++
Sbjct: 150  DDHVLVVNKPSHMVVHPAPGNANGTLVNGILHHCSLPTVASSEKEVLFDTEDMSDDEQDI 209

Query: 662  PLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLAEQFEKHTVFRKYVSLTCGVP 841
                 +  ++VRPGIVHR+DKGTSGLLV+AK+E++HA L+EQF++HT+ R Y+SLTCGVP
Sbjct: 210  FHGASAGAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHTIQRVYISLTCGVP 269

Query: 842  AERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAVTKELCKGGVGVVEWRLET 1021
            +   GR+++ I RD NNR+RM AVP  +   +AR AASRY V + L  GG  +V+WRLET
Sbjct: 270  SASAGRVDIPIGRDSNNRIRMAAVPGLSHHGRARHAASRYKVIEVLAGGGSALVQWRLET 329

Query: 1022 GRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKYHGEISKVISSIERPCLHA 1201
            GRTHQIR HA+++G PLLGDE+YGGTK +ALS L+ + P  Y+ E+S+++S +ERP LHA
Sbjct: 330  GRTHQIRAHAKYMGIPLLGDEVYGGTKNMALSLLRPRTPPYYNDELSRLVSRLERPYLHA 389

Query: 1202 HSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303
              LGFEHP +GEK+ FSCPPP DF ++LN+LRK+
Sbjct: 390  LVLGFEHPHSGEKMRFSCPPPPDFGEILNHLRKI 423


>KHG01344.1 hypothetical protein F383_22314 [Gossypium arboreum]
          Length = 446

 Score =  400 bits (1029), Expect = e-132
 Identities = 206/394 (52%), Positives = 273/394 (69%), Gaps = 6/394 (1%)
 Frame = +2

Query: 140  TSRRVLTRAVISTT------PTPAKTIAVCKEEHDKGFNDKVGEGTPKQRLDAWLSSRME 301
            T  R+L    IST+      PT      V  EE      D+  +G  K RLD+W+SSR++
Sbjct: 36   TISRILRATSISTSAAKHEEPTRTSYAGVQLEETV----DETKQG--KLRLDSWISSRIQ 89

Query: 302  GISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLRAEPEEMQLXXXXX 481
            GISRAR+QSS++ GLV VNG  ++K SH +RAGD ++C I+ L PL+AEPE++ L     
Sbjct: 90   GISRARVQSSIKSGLVKVNGRVVDKVSHSLRAGDKVNCVISDLQPLKAEPEDIPLDIVFE 149

Query: 482  XXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXXXXXXXXXXXXXEVNM 661
                   NKP+HMVVHPAPGN NGTLVNGILHHC LP++                 E ++
Sbjct: 150  DDHVLVVNKPSHMVVHPAPGNANGTLVNGILHHCSLPTVASSEKEVLFDTEDMSDDEQDI 209

Query: 662  PLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLAEQFEKHTVFRKYVSLTCGVP 841
                 +  ++VRPGIVHR+DKGTSGLLV+AK+E++HA L+EQF++HT+ R Y+SLTCGVP
Sbjct: 210  FHGASAGAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHTIQRVYISLTCGVP 269

Query: 842  AERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAVTKELCKGGVGVVEWRLET 1021
            +   GR+++ I RD NNR+RM AVP  +   +AR AASRY V + L  GG  +V+WRLET
Sbjct: 270  SASAGRVDIPIGRDSNNRIRMVAVPGLSHHGRARHAASRYKVIEVLAGGGSALVQWRLET 329

Query: 1022 GRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKYHGEISKVISSIERPCLHA 1201
            GRTHQIR HA+++G PLLGDE+YGGTK +ALS L+ + P  Y+ E+S+++S +ERP LHA
Sbjct: 330  GRTHQIRAHAKYMGIPLLGDEVYGGTKNMALSLLRPRTPPYYNDELSRLVSRLERPYLHA 389

Query: 1202 HSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303
              LGFEHP +GEK+ FSCPPP DF ++LN+LRK+
Sbjct: 390  LVLGFEHPHSGEKMRFSCPPPPDFGEILNHLRKI 423


>XP_010320443.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Solanum lycopersicum]
          Length = 431

 Score =  400 bits (1027), Expect = e-132
 Identities = 199/365 (54%), Positives = 257/365 (70%), Gaps = 9/365 (2%)
 Frame = +2

Query: 239  DKVGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCN 418
            + V   T K RLD+W+SSR++G+SRAR+QSS+R GLV VNG   +K SH+++ GD + C 
Sbjct: 62   ETVDSKTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCT 121

Query: 419  IAPLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSI 598
            IA L PLRAEPE++ L            NKPAHMVVHPAPGN  GTLV+GILHHC LP++
Sbjct: 122  IADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTV 181

Query: 599  GCXXXXXXXXXXXXXXXEVNM------PLLDCS---LESAVRPGIVHRIDKGTSGLLVIA 751
                             E+N+      P  D S    ES+VRPGIVHR+DKGTSGLLV+A
Sbjct: 182  SFPGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVA 241

Query: 752  KNENAHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTR 931
            KNE++ A LAEQF+KHT+ R YVS+TCGVPA   GR+++ I RD NNR+RM A+P +   
Sbjct: 242  KNEHSLADLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKS 301

Query: 932  YQARFAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLA 1111
             ++R A SRY V ++L  GG  +VEWRLETGRTHQIR HA+H+G PL+GDE+YGGTK +A
Sbjct: 302  GKSRHAVSRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMA 361

Query: 1112 LSRLKCKLPSKYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNY 1291
            LS L+ K P  +HGE+S+++S I+RPCLHA +LGF HP TGE + F+  PP DF ++L+ 
Sbjct: 362  LSLLQPKTPPMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSE 421

Query: 1292 LRKLK 1306
            LR +K
Sbjct: 422  LRAIK 426


>XP_004238386.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Solanum lycopersicum]
          Length = 436

 Score =  400 bits (1027), Expect = e-132
 Identities = 199/365 (54%), Positives = 257/365 (70%), Gaps = 9/365 (2%)
 Frame = +2

Query: 239  DKVGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCN 418
            + V   T K RLD+W+SSR++G+SRAR+QSS+R GLV VNG   +K SH+++ GD + C 
Sbjct: 62   ETVDSKTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCT 121

Query: 419  IAPLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSI 598
            IA L PLRAEPE++ L            NKPAHMVVHPAPGN  GTLV+GILHHC LP++
Sbjct: 122  IADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTV 181

Query: 599  GCXXXXXXXXXXXXXXXEVNM------PLLDCS---LESAVRPGIVHRIDKGTSGLLVIA 751
                             E+N+      P  D S    ES+VRPGIVHR+DKGTSGLLV+A
Sbjct: 182  SFPGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVA 241

Query: 752  KNENAHACLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTR 931
            KNE++ A LAEQF+KHT+ R YVS+TCGVPA   GR+++ I RD NNR+RM A+P +   
Sbjct: 242  KNEHSLADLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKS 301

Query: 932  YQARFAASRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLA 1111
             ++R A SRY V ++L  GG  +VEWRLETGRTHQIR HA+H+G PL+GDE+YGGTK +A
Sbjct: 302  GKSRHAVSRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMA 361

Query: 1112 LSRLKCKLPSKYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNY 1291
            LS L+ K P  +HGE+S+++S I+RPCLHA +LGF HP TGE + F+  PP DF ++L+ 
Sbjct: 362  LSLLQPKTPPMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSE 421

Query: 1292 LRKLK 1306
            LR +K
Sbjct: 422  LRAIK 426


>XP_016725957.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like
            [Gossypium hirsutum]
          Length = 432

 Score =  399 bits (1026), Expect = e-132
 Identities = 193/347 (55%), Positives = 256/347 (73%)
 Frame = +2

Query: 263  KQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLR 442
            K RLD+W+SSR++GISRAR+QSS++ GLV VNG  ++K SH +RAGD ++C I+ L PL+
Sbjct: 77   KLRLDSWISSRIQGISRARVQSSIKSGLVKVNGRVVDKVSHSLRAGDKVNCVISDLQPLK 136

Query: 443  AEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXXXX 622
            AEPE++ L            NKP+HMVVHPAPGN NGTLVNGILHHC LP++        
Sbjct: 137  AEPEDIPLDIVFEDDHVLVVNKPSHMVVHPAPGNANGTLVNGILHHCSLPTVASSEKEVL 196

Query: 623  XXXXXXXXXEVNMPLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLAEQFEKHT 802
                     E ++     +  ++VRPGIVHR+DKGTSGLLV+AK+E++HA L+EQF++HT
Sbjct: 197  FDTEDMSDDEQDIFHGASAGPASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHT 256

Query: 803  VFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAVTKELC 982
            + R Y+SLTCGVP+   GR+++ I RD NNR+RM AVP  +   +AR AASRY V + L 
Sbjct: 257  IQRVYISLTCGVPSASAGRVDIPIGRDSNNRIRMVAVPGLSHHGRARHAASRYKVIEVLA 316

Query: 983  KGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKYHGEIS 1162
             GG  +V+WRLETGRTHQIR HA+++G PLLGDE+YGGTK +ALS L+ + P  Y+ E+S
Sbjct: 317  GGGSALVQWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMALSLLRPRTPPYYNDELS 376

Query: 1163 KVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303
            +++S +ERP LHA  LGFEHP +GEK+ FSCPPP DF ++LN+LRK+
Sbjct: 377  RLVSRLERPYLHALVLGFEHPHSGEKMRFSCPPPPDFGEILNHLRKI 423


>XP_016568333.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Capsicum annuum]
          Length = 424

 Score =  399 bits (1024), Expect = e-132
 Identities = 196/357 (54%), Positives = 253/357 (70%), Gaps = 2/357 (0%)
 Frame = +2

Query: 239  DKVGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCN 418
            + V   T K RLD W+SSR++G+SRAR+QSS+R GLV VNG   +K SH ++AGD ++C 
Sbjct: 62   ETVDGNTGKLRLDCWISSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHKVKAGDKVNCT 121

Query: 419  IAPLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSI 598
            IA L PLRAEPE++ L            NKPAHMVVHPAPGN  GTLV+GILHHC LP+ 
Sbjct: 122  IADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTC 181

Query: 599  GCXXXXXXXXXXXXXXXEVNMPLLDCSL--ESAVRPGIVHRIDKGTSGLLVIAKNENAHA 772
                             E+N+   D S+  E +VRPGIVHR+DKGTSGLLV+AKNE++  
Sbjct: 182  SFLGEEVLSDVEDASDDELNVSPYDSSVMCEPSVRPGIVHRLDKGTSGLLVVAKNEHSLV 241

Query: 773  CLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAA 952
             LAEQF+KHT+ R YVS+TCGVP    GR+++ I RD NNR+RM A+P S    ++R A 
Sbjct: 242  DLAEQFKKHTIKRVYVSITCGVPTSVSGRVDIPIGRDSNNRIRMAAIPGSPKSGKSRHAV 301

Query: 953  SRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCK 1132
            SRY V +EL  GG  +VEWRLETGRTHQIR HA+++G PL+GDE+YGGTK +ALS L+ K
Sbjct: 302  SRYKVIEELAGGGSALVEWRLETGRTHQIRAHAKYLGIPLMGDEVYGGTKNMALSLLQPK 361

Query: 1133 LPSKYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303
             P ++HG++S+++S IERPCLHA +LGF HP TGE + F+  PP DF ++L+ LR +
Sbjct: 362  TPPRFHGKLSQLVSRIERPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSELRAI 418


>XP_016568332.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Capsicum annuum]
          Length = 429

 Score =  399 bits (1024), Expect = e-132
 Identities = 196/357 (54%), Positives = 253/357 (70%), Gaps = 2/357 (0%)
 Frame = +2

Query: 239  DKVGEGTPKQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCN 418
            + V   T K RLD W+SSR++G+SRAR+QSS+R GLV VNG   +K SH ++AGD ++C 
Sbjct: 62   ETVDGNTGKLRLDCWISSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHKVKAGDKVNCT 121

Query: 419  IAPLVPLRAEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSI 598
            IA L PLRAEPE++ L            NKPAHMVVHPAPGN  GTLV+GILHHC LP+ 
Sbjct: 122  IADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTC 181

Query: 599  GCXXXXXXXXXXXXXXXEVNMPLLDCSL--ESAVRPGIVHRIDKGTSGLLVIAKNENAHA 772
                             E+N+   D S+  E +VRPGIVHR+DKGTSGLLV+AKNE++  
Sbjct: 182  SFLGEEVLSDVEDASDDELNVSPYDSSVMCEPSVRPGIVHRLDKGTSGLLVVAKNEHSLV 241

Query: 773  CLAEQFEKHTVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAA 952
             LAEQF+KHT+ R YVS+TCGVP    GR+++ I RD NNR+RM A+P S    ++R A 
Sbjct: 242  DLAEQFKKHTIKRVYVSITCGVPTSVSGRVDIPIGRDSNNRIRMAAIPGSPKSGKSRHAV 301

Query: 953  SRYAVTKELCKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCK 1132
            SRY V +EL  GG  +VEWRLETGRTHQIR HA+++G PL+GDE+YGGTK +ALS L+ K
Sbjct: 302  SRYKVIEELAGGGSALVEWRLETGRTHQIRAHAKYLGIPLMGDEVYGGTKNMALSLLQPK 361

Query: 1133 LPSKYHGEISKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303
             P ++HG++S+++S IERPCLHA +LGF HP TGE + F+  PP DF ++L+ LR +
Sbjct: 362  TPPRFHGKLSQLVSRIERPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSELRAI 418


>XP_002519370.2 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Ricinus communis]
          Length = 417

 Score =  398 bits (1022), Expect = e-131
 Identities = 194/347 (55%), Positives = 249/347 (71%)
 Frame = +2

Query: 263  KQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLR 442
            K RLD+W+SSR+ GISRAR+QSS++ GLV VNG  ++K SH ++ GD ++C I+ L PLR
Sbjct: 71   KLRLDSWISSRISGISRARVQSSIKSGLVSVNGRVVDKVSHNVKFGDKVTCTISELQPLR 130

Query: 443  AEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXXXX 622
            AEPE+M L            NKP HMVVHPAPGNP GTLVNGILHHC LP++        
Sbjct: 131  AEPEDMPLDIVYEDEHLLVVNKPPHMVVHPAPGNPTGTLVNGILHHCNLPTVAISSQEVL 190

Query: 623  XXXXXXXXXEVNMPLLDCSLESAVRPGIVHRIDKGTSGLLVIAKNENAHACLAEQFEKHT 802
                     +       C  ES++RPGIVHR+DKGTSGLLV+AK+E+AHA L+EQF++HT
Sbjct: 191  SDAEDRSDDDERSYSSSC--ESSIRPGIVHRLDKGTSGLLVVAKDEHAHAHLSEQFKQHT 248

Query: 803  VFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAVTKELC 982
            + R Y+SLT GVP+   GRI++ I RD NNR+RM A+P    + +AR AASR+ V + L 
Sbjct: 249  IQRVYISLTSGVPSALTGRIDIPIGRDVNNRIRMTAIPGPIKQGRARHAASRFKVVETLA 308

Query: 983  KGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKYHGEIS 1162
             GG  +VEWRLETGRTHQIR HA++IG PLLGDE+YGGT+ +ALS L+ ++PS  H E+S
Sbjct: 309  GGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDEVYGGTRSMALSLLRPRIPSTCHSELS 368

Query: 1163 KVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303
             ++S +ERPCLHA +LGF HP T E++ FSCPPP DF D+L  LRK+
Sbjct: 369  LLLSKLERPCLHALALGFTHPCTREEIHFSCPPPPDFSDILCLLRKM 415


>XP_006473714.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Citrus sinensis]
          Length = 421

 Score =  396 bits (1018), Expect = e-131
 Identities = 193/348 (55%), Positives = 250/348 (71%), Gaps = 1/348 (0%)
 Frame = +2

Query: 263  KQRLDAWLSSRMEGISRARIQSSVRQGLVHVNGTSINKTSHIIRAGDIISCNIAPLVPLR 442
            K RLDAW+SSR++GISRAR+QSS+R GLV +NG  ++K SH ++ GD+++C I+ L PLR
Sbjct: 70   KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129

Query: 443  AEPEEMQLXXXXXXXXXXXXNKPAHMVVHPAPGNPNGTLVNGILHHCGLPSIGCXXXXXX 622
            AE E++ L            NKPAHMVVHPAPGN  GTLVNGILHHC LP++        
Sbjct: 130  AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189

Query: 623  XXXXXXXXXEVNMPLLDCSLESA-VRPGIVHRIDKGTSGLLVIAKNENAHACLAEQFEKH 799
                     E        S+  A +RPGIVHR+DKGTSGLLV+AK+E++HA L+EQF+ H
Sbjct: 190  SDAEDISDDEE----FSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH 245

Query: 800  TVFRKYVSLTCGVPAERDGRIEMSIARDPNNRVRMKAVPSSNTRYQARFAASRYAVTKEL 979
            T+ R Y+SLT GVP++  GRIE+ I+RDPNNR+RM A+P SN   QAR AASRY V + L
Sbjct: 246  TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEIL 305

Query: 980  CKGGVGVVEWRLETGRTHQIRVHAQHIGFPLLGDEIYGGTKGLALSRLKCKLPSKYHGEI 1159
              GG  +VEWRLETGRTHQIR HA+++G PLLGDE+YGGTK +A S L+ +     HG++
Sbjct: 306  AGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAKSLLQPRTAPGSHGKV 365

Query: 1160 SKVISSIERPCLHAHSLGFEHPRTGEKVLFSCPPPQDFMDVLNYLRKL 1303
             K++S ++RPCLHA +LGF HP T EK+ FSCPPP DF ++L+ LR++
Sbjct: 366  LKLVSGLQRPCLHAVALGFTHPHTREKIQFSCPPPADFAEILSQLREI 413


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