BLASTX nr result
ID: Ephedra29_contig00017059
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra29_contig00017059
(241 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AIO05708.1 RNA-dependent RNA polymerase 1, partial [Cocos nucifera] 135 2e-39
AJP06347.1 RDR6 [Pinus tabuliformis] 146 4e-39
XP_001785643.1 RNA-directed RNA polymerase [Physcomitrella paten... 144 2e-38
ABF82437.1 putative RNA-dependent RNA polymerase 6 [Physcomitrel... 144 2e-38
KQL00397.1 hypothetical protein SETIT_015045mg, partial [Setaria... 142 8e-38
XP_004974341.1 PREDICTED: probable RNA-dependent RNA polymerase ... 142 8e-38
BAF05143.1 Os01g0527600, partial [Oryza sativa Japonica Group] B... 138 1e-37
KQK20564.1 hypothetical protein BRADI_1g55350 [Brachypodium dist... 142 1e-37
XP_003561343.1 PREDICTED: probable RNA-dependent RNA polymerase ... 142 1e-37
XP_010232159.1 PREDICTED: probable RNA-dependent RNA polymerase ... 140 4e-37
XP_017426860.1 PREDICTED: probable RNA-dependent RNA polymerase ... 140 7e-37
XP_007153218.1 hypothetical protein PHAVU_003G016800g [Phaseolus... 140 7e-37
XP_006645957.1 PREDICTED: probable RNA-dependent RNA polymerase ... 139 1e-36
XP_014519796.1 PREDICTED: probable RNA-dependent RNA polymerase ... 139 1e-36
KYP49990.1 putative RNA-dependent RNA polymerase 1 [Cajanus cajan] 139 1e-36
XP_006842072.1 PREDICTED: RNA-dependent RNA polymerase 6 [Ambore... 139 1e-36
XP_015622237.1 PREDICTED: probable RNA-dependent RNA polymerase ... 139 1e-36
XP_006842073.1 PREDICTED: RNA-dependent RNA polymerase 6 [Ambore... 139 2e-36
KHN34545.1 RNA-dependent RNA polymerase 1 [Glycine soja] 138 3e-36
XP_014633569.1 PREDICTED: probable RNA-dependent RNA polymerase ... 138 3e-36
>AIO05708.1 RNA-dependent RNA polymerase 1, partial [Cocos nucifera]
Length = 134
Score = 135 bits (340), Expect = 2e-39
Identities = 59/73 (80%), Positives = 66/73 (90%)
Frame = +2
Query: 5 VVTGKVIVAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGARPHPNEASGSDLDGDT 184
V+ GKV+VAKNPCLHPGDIR+L AVD+PEL HMVDC+VFPQKG RPHPNE SGSDLDGD
Sbjct: 24 VLKGKVVVAKNPCLHPGDIRVLSAVDVPELRHMVDCVVFPQKGKRPHPNECSGSDLDGDI 83
Query: 185 YFVSWEPSLIPPR 223
YFVSW+ +LIPPR
Sbjct: 84 YFVSWDANLIPPR 96
>AJP06347.1 RDR6 [Pinus tabuliformis]
Length = 1189
Score = 146 bits (369), Expect = 4e-39
Identities = 63/80 (78%), Positives = 71/80 (88%)
Frame = +2
Query: 2 TVVTGKVIVAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGARPHPNEASGSDLDGD 181
T+V GKV+VAKNPCLHPGD+RILEAVD P L+H+VDCLVFPQ G RPHPNEASGSDLD D
Sbjct: 801 TIVRGKVVVAKNPCLHPGDVRILEAVDAPSLHHLVDCLVFPQNGHRPHPNEASGSDLDDD 860
Query: 182 TYFVSWEPSLIPPRGESWDP 241
YFVSW+ SL+PP GESW+P
Sbjct: 861 IYFVSWDSSLVPPSGESWEP 880
>XP_001785643.1 RNA-directed RNA polymerase [Physcomitrella patens] EDQ49541.1
RNA-directed RNA polymerase, partial [Physcomitrella
patens]
Length = 1049
Score = 144 bits (363), Expect = 2e-38
Identities = 62/79 (78%), Positives = 69/79 (87%)
Frame = +2
Query: 5 VVTGKVIVAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGARPHPNEASGSDLDGDT 184
V+TGKVI+ KNPCLHPGDIRILEAVD+PEL+ MVDCLV PQ G RPHPNE SGSDLDGD
Sbjct: 674 VITGKVIMVKNPCLHPGDIRILEAVDLPELHSMVDCLVLPQNGPRPHPNEVSGSDLDGDV 733
Query: 185 YFVSWEPSLIPPRGESWDP 241
YF W+P+LIPP GESW+P
Sbjct: 734 YFTCWDPNLIPPSGESWEP 752
>ABF82437.1 putative RNA-dependent RNA polymerase 6 [Physcomitrella patens]
ABF82438.1 putative RNA-dependent RNA polymerase 6
[Physcomitrella patens]
Length = 1152
Score = 144 bits (363), Expect = 2e-38
Identities = 62/79 (78%), Positives = 69/79 (87%)
Frame = +2
Query: 5 VVTGKVIVAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGARPHPNEASGSDLDGDT 184
V+TGKVI+ KNPCLHPGDIRILEAVD+PEL+ MVDCLV PQ G RPHPNE SGSDLDGD
Sbjct: 767 VITGKVIMVKNPCLHPGDIRILEAVDLPELHSMVDCLVLPQNGPRPHPNEVSGSDLDGDV 826
Query: 185 YFVSWEPSLIPPRGESWDP 241
YF W+P+LIPP GESW+P
Sbjct: 827 YFTCWDPNLIPPSGESWEP 845
>KQL00397.1 hypothetical protein SETIT_015045mg, partial [Setaria italica]
Length = 1219
Score = 142 bits (359), Expect = 8e-38
Identities = 58/79 (73%), Positives = 72/79 (91%)
Frame = +2
Query: 5 VVTGKVIVAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGARPHPNEASGSDLDGDT 184
V+ G +++AKNPCLHPGD+RILEAVD+PEL+H+VDCLVFP+KG RPHPNEASGSDLDGD
Sbjct: 856 VIVGTIVMAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPKKGKRPHPNEASGSDLDGDV 915
Query: 185 YFVSWEPSLIPPRGESWDP 241
YFV+W+ +L+PPR +SW P
Sbjct: 916 YFVTWDKNLVPPRKKSWPP 934
>XP_004974341.1 PREDICTED: probable RNA-dependent RNA polymerase SHL2 [Setaria
italica]
Length = 1257
Score = 142 bits (359), Expect = 8e-38
Identities = 58/79 (73%), Positives = 72/79 (91%)
Frame = +2
Query: 5 VVTGKVIVAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGARPHPNEASGSDLDGDT 184
V+ G +++AKNPCLHPGD+RILEAVD+PEL+H+VDCLVFP+KG RPHPNEASGSDLDGD
Sbjct: 856 VIVGTIVMAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPKKGKRPHPNEASGSDLDGDV 915
Query: 185 YFVSWEPSLIPPRGESWDP 241
YFV+W+ +L+PPR +SW P
Sbjct: 916 YFVTWDKNLVPPRKKSWPP 934
>BAF05143.1 Os01g0527600, partial [Oryza sativa Japonica Group] BAS72488.1
Os01g0527600, partial [Oryza sativa Japonica Group]
Length = 385
Score = 138 bits (347), Expect = 1e-37
Identities = 58/78 (74%), Positives = 69/78 (88%)
Frame = +2
Query: 8 VTGKVIVAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGARPHPNEASGSDLDGDTY 187
+ G V++AKNPCLHPGD+RILEAVD+PEL+H+VDCLVFPQKG RPH NEASGSDLDGD Y
Sbjct: 1 ILGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLY 60
Query: 188 FVSWEPSLIPPRGESWDP 241
FV+W+ LIPP +SW+P
Sbjct: 61 FVTWDEKLIPPGKKSWNP 78
>KQK20564.1 hypothetical protein BRADI_1g55350 [Brachypodium distachyon]
Length = 963
Score = 142 bits (358), Expect = 1e-37
Identities = 58/79 (73%), Positives = 71/79 (89%)
Frame = +2
Query: 5 VVTGKVIVAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGARPHPNEASGSDLDGDT 184
++ G V++AKNPCLHPGD+RILEAVD+PEL+H+VDCLVFPQKG RPHPNEASGSDLDGD
Sbjct: 824 IIVGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHPNEASGSDLDGDL 883
Query: 185 YFVSWEPSLIPPRGESWDP 241
YFV+W+ L+PP +SW+P
Sbjct: 884 YFVTWDEKLVPPGKKSWNP 902
>XP_003561343.1 PREDICTED: probable RNA-dependent RNA polymerase SHL2 [Brachypodium
distachyon] KQK20559.1 hypothetical protein BRADI_1g55350
[Brachypodium distachyon] KQK20560.1 hypothetical protein
BRADI_1g55350 [Brachypodium distachyon] KQK20561.1
hypothetical protein BRADI_1g55350 [Brachypodium
distachyon] KQK20562.1 hypothetical protein BRADI_1g55350
[Brachypodium distachyon] KQK20563.1 hypothetical protein
BRADI_1g55350 [Brachypodium distachyon]
Length = 1208
Score = 142 bits (358), Expect = 1e-37
Identities = 58/79 (73%), Positives = 71/79 (89%)
Frame = +2
Query: 5 VVTGKVIVAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGARPHPNEASGSDLDGDT 184
++ G V++AKNPCLHPGD+RILEAVD+PEL+H+VDCLVFPQKG RPHPNEASGSDLDGD
Sbjct: 824 IIVGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHPNEASGSDLDGDL 883
Query: 185 YFVSWEPSLIPPRGESWDP 241
YFV+W+ L+PP +SW+P
Sbjct: 884 YFVTWDEKLVPPGKKSWNP 902
>XP_010232159.1 PREDICTED: probable RNA-dependent RNA polymerase SHL2 [Brachypodium
distachyon] KQK09241.1 hypothetical protein BRADI_2g46870
[Brachypodium distachyon]
Length = 1200
Score = 140 bits (354), Expect = 4e-37
Identities = 58/79 (73%), Positives = 70/79 (88%)
Frame = +2
Query: 5 VVTGKVIVAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGARPHPNEASGSDLDGDT 184
++ G V++AKNPCLHPGD+RILEAVD+PEL+H+VDCLVFPQ G RPHPNEASGSDLDGD
Sbjct: 831 IIVGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQNGERPHPNEASGSDLDGDL 890
Query: 185 YFVSWEPSLIPPRGESWDP 241
YFV+W+ LIPP +SW+P
Sbjct: 891 YFVTWDEKLIPPGKKSWNP 909
>XP_017426860.1 PREDICTED: probable RNA-dependent RNA polymerase 1 [Vigna
angularis] KOM46254.1 hypothetical protein
LR48_Vigan06g156000 [Vigna angularis] BAT98862.1
hypothetical protein VIGAN_10021800 [Vigna angularis
var. angularis]
Length = 1132
Score = 140 bits (352), Expect = 7e-37
Identities = 59/76 (77%), Positives = 68/76 (89%)
Frame = +2
Query: 5 VVTGKVIVAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGARPHPNEASGSDLDGDT 184
+V GKV+VAKNPCLHPGD+R+L AVD+P L+HMVDC+VFPQKG RPHPNE SGSDLDGD
Sbjct: 745 IVKGKVVVAKNPCLHPGDVRVLRAVDVPSLHHMVDCVVFPQKGRRPHPNECSGSDLDGDV 804
Query: 185 YFVSWEPSLIPPRGES 232
YFVSW+P LIPPR E+
Sbjct: 805 YFVSWDPDLIPPRQEN 820
>XP_007153218.1 hypothetical protein PHAVU_003G016800g [Phaseolus vulgaris]
ESW25212.1 hypothetical protein PHAVU_003G016800g
[Phaseolus vulgaris]
Length = 1139
Score = 140 bits (352), Expect = 7e-37
Identities = 60/76 (78%), Positives = 68/76 (89%)
Frame = +2
Query: 5 VVTGKVIVAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGARPHPNEASGSDLDGDT 184
+V GKVIVAKNPCLHPGD+R+L AVD+P L+HMVDC+VFPQKG RPHPNE SGSDLDGD
Sbjct: 751 IVKGKVIVAKNPCLHPGDVRVLRAVDVPSLHHMVDCVVFPQKGRRPHPNECSGSDLDGDI 810
Query: 185 YFVSWEPSLIPPRGES 232
YFVSW+P LIPPR E+
Sbjct: 811 YFVSWDPDLIPPRQEN 826
>XP_006645957.1 PREDICTED: probable RNA-dependent RNA polymerase SHL2 [Oryza
brachyantha]
Length = 1105
Score = 139 bits (351), Expect = 1e-36
Identities = 58/79 (73%), Positives = 70/79 (88%)
Frame = +2
Query: 5 VVTGKVIVAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGARPHPNEASGSDLDGDT 184
++ G V++AKNPCLHPGD+RILEAVD+PEL+H+VDCLVFPQKG RPH NEASGSDLDGD
Sbjct: 720 IIVGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDL 779
Query: 185 YFVSWEPSLIPPRGESWDP 241
YFV+W+ LIPP +SW+P
Sbjct: 780 YFVTWDEKLIPPGKKSWNP 798
>XP_014519796.1 PREDICTED: probable RNA-dependent RNA polymerase 1 [Vigna radiata
var. radiata]
Length = 1133
Score = 139 bits (351), Expect = 1e-36
Identities = 59/76 (77%), Positives = 68/76 (89%)
Frame = +2
Query: 5 VVTGKVIVAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGARPHPNEASGSDLDGDT 184
+V GKV+VAKNPCLHPGD+R+L AVD+P L+HMVDC+VFPQKG RPHPNE SGSDLDGD
Sbjct: 747 IVKGKVVVAKNPCLHPGDVRVLRAVDVPSLHHMVDCVVFPQKGRRPHPNECSGSDLDGDI 806
Query: 185 YFVSWEPSLIPPRGES 232
YFVSW+P LIPPR E+
Sbjct: 807 YFVSWDPDLIPPRQEN 822
>KYP49990.1 putative RNA-dependent RNA polymerase 1 [Cajanus cajan]
Length = 1135
Score = 139 bits (351), Expect = 1e-36
Identities = 59/76 (77%), Positives = 68/76 (89%)
Frame = +2
Query: 5 VVTGKVIVAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGARPHPNEASGSDLDGDT 184
+V GKV+VAKNPCLHPGD+R+L AVD+P L+HMVDC+VFPQKG RPHPNE SGSDLDGD
Sbjct: 751 IVKGKVVVAKNPCLHPGDVRVLRAVDVPSLHHMVDCVVFPQKGRRPHPNECSGSDLDGDI 810
Query: 185 YFVSWEPSLIPPRGES 232
YFVSW+P LIPPR E+
Sbjct: 811 YFVSWDPDLIPPRQEN 826
>XP_006842072.1 PREDICTED: RNA-dependent RNA polymerase 6 [Amborella trichopoda]
ERN03747.1 hypothetical protein AMTR_s00078p00055040
[Amborella trichopoda]
Length = 1207
Score = 139 bits (351), Expect = 1e-36
Identities = 59/77 (76%), Positives = 70/77 (90%)
Frame = +2
Query: 5 VVTGKVIVAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGARPHPNEASGSDLDGDT 184
V+TG V+VAKNPCLHPG+IR+LEAVD+P L+H+VDCLVFPQKG RPH NEASGSDLDGDT
Sbjct: 818 VITGTVVVAKNPCLHPGEIRVLEAVDVPGLHHLVDCLVFPQKGDRPHTNEASGSDLDGDT 877
Query: 185 YFVSWEPSLIPPRGESW 235
YFV+W +L+PP G+SW
Sbjct: 878 YFVTWNETLVPPSGKSW 894
>XP_015622237.1 PREDICTED: probable RNA-dependent RNA polymerase SHL2 [Oryza sativa
Japonica Group] Q8LHH9.1 RecName: Full=Probable
RNA-dependent RNA polymerase SHL2; AltName: Full=Protein
SHOOTLESS 2 BAC00725.1 putative RNA-dependent RNA
polymerase [Oryza sativa Japonica Group] BAF80151.1
SHOOTLESS2 [Oryza sativa Japonica Group]
Length = 1218
Score = 139 bits (351), Expect = 1e-36
Identities = 59/79 (74%), Positives = 70/79 (88%)
Frame = +2
Query: 5 VVTGKVIVAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGARPHPNEASGSDLDGDT 184
V+ G V++AKNPCLHPGD+RILEAVD+PEL+H+VDCLVFPQKG RPH NEASGSDLDGD
Sbjct: 833 VILGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDL 892
Query: 185 YFVSWEPSLIPPRGESWDP 241
YFV+W+ LIPP +SW+P
Sbjct: 893 YFVTWDEKLIPPGKKSWNP 911
>XP_006842073.1 PREDICTED: RNA-dependent RNA polymerase 6 [Amborella trichopoda]
ERN03748.1 hypothetical protein AMTR_s00078p00056260
[Amborella trichopoda]
Length = 1207
Score = 139 bits (349), Expect = 2e-36
Identities = 58/77 (75%), Positives = 69/77 (89%)
Frame = +2
Query: 5 VVTGKVIVAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGARPHPNEASGSDLDGDT 184
V+TG V++AKNPCLHPG+IR+LEAVD+P L+H+VDCLVFPQKG RPH NEASGSDLDGDT
Sbjct: 818 VITGTVVIAKNPCLHPGEIRVLEAVDVPGLHHLVDCLVFPQKGDRPHTNEASGSDLDGDT 877
Query: 185 YFVSWEPSLIPPRGESW 235
YFV+W L+PP G+SW
Sbjct: 878 YFVTWNEKLVPPSGKSW 894
>KHN34545.1 RNA-dependent RNA polymerase 1 [Glycine soja]
Length = 959
Score = 138 bits (347), Expect = 3e-36
Identities = 59/76 (77%), Positives = 67/76 (88%)
Frame = +2
Query: 5 VVTGKVIVAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGARPHPNEASGSDLDGDT 184
+V GKV+VAKNPCLHPGD+RIL AVD+P L+HMVDC+VFPQKG RPHPNE SGSDLDGD
Sbjct: 575 IVKGKVVVAKNPCLHPGDVRILRAVDVPSLHHMVDCVVFPQKGRRPHPNECSGSDLDGDI 634
Query: 185 YFVSWEPSLIPPRGES 232
YFVSW+P LIPP E+
Sbjct: 635 YFVSWDPDLIPPHQEN 650
>XP_014633569.1 PREDICTED: probable RNA-dependent RNA polymerase 1 [Glycine max]
KRH49672.1 hypothetical protein GLYMA_07G171400 [Glycine
max]
Length = 1135
Score = 138 bits (347), Expect = 3e-36
Identities = 59/76 (77%), Positives = 67/76 (88%)
Frame = +2
Query: 5 VVTGKVIVAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGARPHPNEASGSDLDGDT 184
+V GKV+VAKNPCLHPGD+RIL AVD+P L+HMVDC+VFPQKG RPHPNE SGSDLDGD
Sbjct: 751 IVKGKVVVAKNPCLHPGDVRILRAVDVPSLHHMVDCVVFPQKGRRPHPNECSGSDLDGDI 810
Query: 185 YFVSWEPSLIPPRGES 232
YFVSW+P LIPP E+
Sbjct: 811 YFVSWDPDLIPPHQEN 826