BLASTX nr result

ID: Ephedra29_contig00015965 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra29_contig00015965
         (1243 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_002970642.1 hypothetical protein SELMODRAFT_411379 [Selaginel...   249   6e-75
XP_002968468.1 hypothetical protein SELMODRAFT_409308 [Selaginel...   247   3e-74
OAE35243.1 hypothetical protein AXG93_1162s1190 [Marchantia poly...   233   2e-67
ABK26202.1 unknown [Picea sitchensis]                                 207   8e-60
XP_020086575.1 RNA polymerase II-associated protein 3 isoform X3...   189   1e-51
XP_020086574.1 RNA polymerase II-associated protein 3 isoform X2...   186   2e-50
XP_020086573.1 RNA polymerase II-associated protein 3 isoform X1...   186   2e-50
XP_020086576.1 RNA polymerase II-associated protein 3 isoform X4...   184   3e-50
GAQ89022.1 hypothetical protein KFL_004800070 [Klebsormidium fla...   187   1e-49
XP_010938247.1 PREDICTED: RNA polymerase II-associated protein 3...   182   2e-49
XP_015874896.1 PREDICTED: RNA polymerase II-associated protein 3...   180   1e-48
KQL13207.1 hypothetical protein SETIT_022241mg [Setaria italica]      174   2e-48
XP_006375724.1 hypothetical protein POPTR_0013s00980g [Populus t...   174   2e-48
XP_015874895.1 PREDICTED: RNA polymerase II-associated protein 3...   179   2e-48
XP_015874894.1 PREDICTED: RNA polymerase II-associated protein 3...   179   2e-48
XP_010659703.1 PREDICTED: RNA polymerase II-associated protein 3...   178   5e-48
OAY77359.1 RNA polymerase II-associated protein 3 [Ananas comosus]    179   9e-48
XP_002277910.2 PREDICTED: RNA polymerase II-associated protein 3...   178   1e-47
XP_019080642.1 PREDICTED: RNA polymerase II-associated protein 3...   176   2e-47
KQL13209.1 hypothetical protein SETIT_022241mg [Setaria italica]      174   3e-47

>XP_002970642.1 hypothetical protein SELMODRAFT_411379 [Selaginella moellendorffii]
            EFJ28772.1 hypothetical protein SELMODRAFT_411379
            [Selaginella moellendorffii]
          Length = 444

 Score =  249 bits (636), Expect = 6e-75
 Identities = 140/357 (39%), Positives = 208/357 (58%)
 Frame = +2

Query: 110  LNLSDKMKKNPMDFHQFVYDLQEWERSIKEKDKRIKTNRPDEKESLPPVRARVESSSKET 289
            ++   ++++N  + H F+  LQ+WE+ +K KD  +KT   D+ + L PVR +  + ++  
Sbjct: 1    MDAQKQIRENTQELHDFLRGLQDWEKEVKNKDNELKTKSQDQVKELRPVREKKRAQAQ-- 58

Query: 290  TRPNLAAKQTSAASHTYDYFRDKWEKFDVESALKEVDEVENKQFSQKDIKSFAKQNSRKE 469
                 AA   +AA HTYDYFRDKW+KFDV++AL+EVDE EN+Q   + + S +K+N    
Sbjct: 59   -----AAPSVNAAKHTYDYFRDKWDKFDVDAALREVDE-ENEQ---EKVASKSKEN---- 105

Query: 470  KRIPDISSRKKNLYDDYTGNGHMGTLGSIDKVSSILKGPQDTASEALSEKEQGNEYFKNK 649
                           DY   G   T  +        KG   +  +A++EKE GNE FK K
Sbjct: 106  ---------------DYAAKGTPQTFSNEAVQPDFEKG---SLPDAVTEKELGNELFKEK 147

Query: 650  KYSEAIDCYTRSILLYPTAVSFANRAMAYMKVGRYAEAEYDCSEAINLDDRYVKAYSRRG 829
            KY +AI+CY+RSI L+PTAV++ANRAMA +K+ RY +AE DCSEAI LDDRY KAY+RRG
Sbjct: 148  KYVQAIECYSRSIGLHPTAVAYANRAMALLKIRRYEDAEMDCSEAIALDDRYTKAYARRG 207

Query: 830  AARKELGNLIDAIDDFEFALRLEPGNKELQKHFEEAQKMNEKNLRRKLPDKKAPVRIEEI 1009
             AR+E   L+ A++DFEFALRLEP NK+LQK +EEA+ + EK    + P+ K  ++++  
Sbjct: 208  TARRERDKLLGAVEDFEFALRLEPHNKDLQKQYEEAKALYEKKNAYRPPEDKVTLQVQR- 266

Query: 1010 TKDSSLVCGDPKQKSGVCERRLDNNASVCIEESPMDSLAIAGSDGQRGAISTDQASP 1180
               SS+   +  +       +  N      +E+ M +  I  +     A++    +P
Sbjct: 267  ---SSIKAVNGAESMKKTSSQTSNGKQPVKDEAAMQASTIRAAATAMNAVTQHMVAP 320


>XP_002968468.1 hypothetical protein SELMODRAFT_409308 [Selaginella moellendorffii]
            EFJ30722.1 hypothetical protein SELMODRAFT_409308
            [Selaginella moellendorffii]
          Length = 444

 Score =  247 bits (631), Expect = 3e-74
 Identities = 132/298 (44%), Positives = 189/298 (63%)
 Frame = +2

Query: 110  LNLSDKMKKNPMDFHQFVYDLQEWERSIKEKDKRIKTNRPDEKESLPPVRARVESSSKET 289
            ++   ++++N  + H F+  LQ+WE+ +K KD  +KT   D+ + L PVR +  + ++  
Sbjct: 1    MDAQKQIRENTQELHDFLRGLQDWEKEVKNKDNELKTKSQDQVKELRPVREKKRAQAQ-- 58

Query: 290  TRPNLAAKQTSAASHTYDYFRDKWEKFDVESALKEVDEVENKQFSQKDIKSFAKQNSRKE 469
                 AA   +AA HTYDYFRDKW+KFDV++AL+EVDE EN+Q   + + S +K+N    
Sbjct: 59   -----AAPSVNAAKHTYDYFRDKWDKFDVDAALREVDE-ENEQ---EKVASKSKEN---- 105

Query: 470  KRIPDISSRKKNLYDDYTGNGHMGTLGSIDKVSSILKGPQDTASEALSEKEQGNEYFKNK 649
                           DY   G   T  +        KG   +  +A++EKE GNE FK K
Sbjct: 106  ---------------DYAAEGTPQTFSNEAVQPDFEKG---SLPDAVTEKELGNELFKEK 147

Query: 650  KYSEAIDCYTRSILLYPTAVSFANRAMAYMKVGRYAEAEYDCSEAINLDDRYVKAYSRRG 829
            KY +AI+CY+RSI L+PTAV++ANRAMA +K+ RY +AE DCSEAI LDDRY KAY+RRG
Sbjct: 148  KYVQAIECYSRSIGLHPTAVAYANRAMALLKIRRYEDAEMDCSEAIALDDRYTKAYARRG 207

Query: 830  AARKELGNLIDAIDDFEFALRLEPGNKELQKHFEEAQKMNEKNLRRKLPDKKAPVRIE 1003
             AR+E   L+ A++DFEFALRLEP NK+LQK +EEA+ + EK    + P+ K  ++++
Sbjct: 208  TARRERDKLLGAVEDFEFALRLEPHNKDLQKQYEEAKALYEKKNAYRPPEDKVTLQVQ 265


>OAE35243.1 hypothetical protein AXG93_1162s1190 [Marchantia polymorpha subsp.
            polymorpha]
          Length = 571

 Score =  233 bits (594), Expect = 2e-67
 Identities = 151/410 (36%), Positives = 216/410 (52%), Gaps = 42/410 (10%)
 Frame = +2

Query: 140  PMDFHQFVYDLQEWERSIKEKDKRIKTNRPDEKESLPP-------VRARVE--------- 271
            P + H F+ DL+ WE+S+KEK+K ++  +      + P         A VE         
Sbjct: 8    PQELHDFLKDLKGWEKSVKEKEKNLRNEQATRGNDVIPNPRRNSSAAAHVEGKGSQEICK 67

Query: 272  ------------SSSKETTRPNLAAKQ--TSAASHTYDYFRDKWEKFDVESALKEVDEVE 409
                        S SK+T +  + A +  T+AASHTYDYFRDKW+KFDV++ALKE+DE +
Sbjct: 68   EKSNGKVDPITVSGSKKTEKTQVPASKPGTTAASHTYDYFRDKWDKFDVDAALKEIDEED 127

Query: 410  N--KQFSQKDIK---------SFAKQNSRKEKRIPDISSRKKNLYDDYT-GNGHMGTLGS 553
               +   QK ++         S     + + KR  +  S+++ +      G G    +G+
Sbjct: 128  EDGEDLGQKKVQDKVIPPVRGSQGGSKTVERKRTAEAISKEQTMEPGKLFGRG----IGA 183

Query: 554  IDKVSSILKGPQDTASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFANRAMA 733
            ++++   L G  +   +A SEKE GNEYFK  KY  A +CY+RSI L PTAV++ANRAMA
Sbjct: 184  MNRLPGSL-GYDEGIPDATSEKELGNEYFKEGKYVRAFECYSRSIALQPTAVAYANRAMA 242

Query: 734  YMKVGRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEPGNKE 913
             +K+ R+ EAE DC+EAI+LDDRY KAY+RRG AR+EL   + A++DFEFA RLEP N  
Sbjct: 243  ALKLNRFKEAEEDCTEAISLDDRYTKAYARRGTARRELQKYLMAVEDFEFAFRLEPENTH 302

Query: 914  LQKHFEEAQKMNEKNLRRKLPDKKAPVRIEEITKDSSLVCGDPKQKSGVCERRLDNNASV 1093
            L++ + EA++  EK    K  +KK P+ ++E+ K S  V    K              S 
Sbjct: 303  LKRQYMEARETYEKRTGNKPSEKKVPIIVKEVAKTSPQVPVAAK--------------SS 348

Query: 1094 CIEESPMDSLAIAGSDGQRGAISTDQASPLKEISVASNSSAVPLVSKTSA 1243
             IEESP      AG       I+    +   E   A     VP+V    A
Sbjct: 349  AIEESPKPVHKPAGPTSSSTKINNADLAGDMESFGADTRPKVPIVQANGA 398


>ABK26202.1 unknown [Picea sitchensis]
          Length = 369

 Score =  207 bits (528), Expect = 8e-60
 Identities = 99/138 (71%), Positives = 122/138 (88%)
 Frame = +2

Query: 614  EKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFANRAMAYMKVGRYAEAEYDCSEAINL 793
            EKEQGNEYFK KKY+EAIDCY+RSI+L PTAV+FANRAMAY+K+ R+ EAEYDCSEAI+L
Sbjct: 3    EKEQGNEYFKEKKYAEAIDCYSRSIVLQPTAVAFANRAMAYIKMRRFEEAEYDCSEAIDL 62

Query: 794  DDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEPGNKELQKHFEEAQKMNEKNLRRKL 973
            DDRYVKAYSRRG A+KELG L+DAIDDFEFALRLEP NKEL+K +EEA++M  +++ +K+
Sbjct: 63   DDRYVKAYSRRGTAKKELGKLLDAIDDFEFALRLEPENKELKKQYEEARRMYGESIAKKI 122

Query: 974  PDKKAPVRIEEITKDSSL 1027
            P+KKA V IEE+  D ++
Sbjct: 123  PEKKARVGIEELKSDPAV 140


>XP_020086575.1 RNA polymerase II-associated protein 3 isoform X3 [Ananas comosus]
          Length = 466

 Score =  189 bits (480), Expect = 1e-51
 Identities = 114/278 (41%), Positives = 170/278 (61%), Gaps = 10/278 (3%)
 Frame = +2

Query: 353  DKWEKFDVESALKEVDEVEN--KQFSQKDIKSFAKQNSRKE-------KRIPDISSR-KK 502
            D+    +VE  L E+    N  K  +QK     + QNS K        K++P + S  K 
Sbjct: 7    DRDRSLEVEGFLNELQGWNNLFKDKNQKLKTQGSLQNSGKSQEEKGPPKKVPAVESNTKS 66

Query: 503  NLYDDYTGNGHMGTLGSIDKVSSILKGPQDTASEALSEKEQGNEYFKNKKYSEAIDCYTR 682
            N+  D+    +     +  K S+ L   ++T  +A SEKE GNEYFK KK++EAIDCY+R
Sbjct: 67   NVASDFPAK-NPNERYNYSKYSAFLN--EETLPDATSEKELGNEYFKQKKFAEAIDCYSR 123

Query: 683  SILLYPTAVSFANRAMAYMKVGRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLID 862
            SI L PT+V+FANRAMAY+K+ R  EAE DC+EA+NLDDRYVKAYSRR  ARKELG L  
Sbjct: 124  SIALSPTSVAFANRAMAYLKLRRLEEAENDCTEALNLDDRYVKAYSRRATARKELGKLKQ 183

Query: 863  AIDDFEFALRLEPGNKELQKHFEEAQKMNEKNLRRKLPDKKAPVRIEEITKDSSLVCGDP 1042
            +++D EFA+RLEP N+EL+K + E + + ++ + +K+     P  + EI K  +L     
Sbjct: 184  SMEDSEFAIRLEPNNQELKKQYAETKALYDQEMAKKVSQSLKP-SVSEIQKADNLATYKA 242

Query: 1043 KQKSGVCERRLDNNASVCIEESPMDSLAIAGSDGQRGA 1156
            ++ +   ++ ++ N+S+ I++SP+    +A +D +R A
Sbjct: 243  QKTAATAKKTVNMNSSMEIDDSPL----VAVNDTEREA 276


>XP_020086574.1 RNA polymerase II-associated protein 3 isoform X2 [Ananas comosus]
          Length = 486

 Score =  186 bits (473), Expect = 2e-50
 Identities = 114/338 (33%), Positives = 185/338 (54%)
 Frame = +2

Query: 143  MDFHQFVYDLQEWERSIKEKDKRIKTNRPDEKESLPPVRARVESSSKETTRPNLAAKQTS 322
            ++   F+ +LQ W    K+K++++KT                               Q  
Sbjct: 12   LEVEGFLNELQGWNNLFKDKNQKLKT-------------------------------QYR 40

Query: 323  AASHTYDYFRDKWEKFDVESALKEVDEVENKQFSQKDIKSFAKQNSRKEKRIPDISSRKK 502
               ++Y Y       F ++ +L+   + + ++   K +   A +++ K     D  ++  
Sbjct: 41   ECYYSYGYSESNLLLFSLKGSLQNSGKSQEEKGPPKKVP--AVESNTKSNVASDFPAKNP 98

Query: 503  NLYDDYTGNGHMGTLGSIDKVSSILKGPQDTASEALSEKEQGNEYFKNKKYSEAIDCYTR 682
            N   +Y+            K S+ L   ++T  +A SEKE GNEYFK KK++EAIDCY+R
Sbjct: 99   NERYNYS------------KYSAFLN--EETLPDATSEKELGNEYFKQKKFAEAIDCYSR 144

Query: 683  SILLYPTAVSFANRAMAYMKVGRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLID 862
            SI L PT+V+FANRAMAY+K+ R  EAE DC+EA+NLDDRYVKAYSRR  ARKELG L  
Sbjct: 145  SIALSPTSVAFANRAMAYLKLRRLEEAENDCTEALNLDDRYVKAYSRRATARKELGKLKQ 204

Query: 863  AIDDFEFALRLEPGNKELQKHFEEAQKMNEKNLRRKLPDKKAPVRIEEITKDSSLVCGDP 1042
            +++D EFA+RLEP N+EL+K + E + + ++ + +K+     P  + EI K  +L     
Sbjct: 205  SMEDSEFAIRLEPNNQELKKQYAETKALYDQEMAKKVSQSLKP-SVSEIQKADNLATYKA 263

Query: 1043 KQKSGVCERRLDNNASVCIEESPMDSLAIAGSDGQRGA 1156
            ++ +   ++ ++ N+S+ I++SP+    +A +D +R A
Sbjct: 264  QKTAATAKKTVNMNSSMEIDDSPL----VAVNDTEREA 297


>XP_020086573.1 RNA polymerase II-associated protein 3 isoform X1 [Ananas comosus]
          Length = 487

 Score =  186 bits (473), Expect = 2e-50
 Identities = 114/338 (33%), Positives = 185/338 (54%)
 Frame = +2

Query: 143  MDFHQFVYDLQEWERSIKEKDKRIKTNRPDEKESLPPVRARVESSSKETTRPNLAAKQTS 322
            ++   F+ +LQ W    K+K++++KT                               Q  
Sbjct: 12   LEVEGFLNELQGWNNLFKDKNQKLKT-------------------------------QYR 40

Query: 323  AASHTYDYFRDKWEKFDVESALKEVDEVENKQFSQKDIKSFAKQNSRKEKRIPDISSRKK 502
               ++Y Y       F ++ +L+   + + ++   K +   A +++ K     D  ++  
Sbjct: 41   ECYYSYGYSESNLLLFSLKGSLQNSGKSQEEKGPPKKVP--AVESNTKSNVASDFPAKNP 98

Query: 503  NLYDDYTGNGHMGTLGSIDKVSSILKGPQDTASEALSEKEQGNEYFKNKKYSEAIDCYTR 682
            N   +Y+            K S+ L   ++T  +A SEKE GNEYFK KK++EAIDCY+R
Sbjct: 99   NERYNYS------------KYSAFLN--EETLPDATSEKELGNEYFKQKKFAEAIDCYSR 144

Query: 683  SILLYPTAVSFANRAMAYMKVGRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLID 862
            SI L PT+V+FANRAMAY+K+ R  EAE DC+EA+NLDDRYVKAYSRR  ARKELG L  
Sbjct: 145  SIALSPTSVAFANRAMAYLKLRRLEEAENDCTEALNLDDRYVKAYSRRATARKELGKLKQ 204

Query: 863  AIDDFEFALRLEPGNKELQKHFEEAQKMNEKNLRRKLPDKKAPVRIEEITKDSSLVCGDP 1042
            +++D EFA+RLEP N+EL+K + E + + ++ + +K+     P  + EI K  +L     
Sbjct: 205  SMEDSEFAIRLEPNNQELKKQYAETKALYDQEMAKKVSQSLKP-SVSEIQKADNLATYKA 263

Query: 1043 KQKSGVCERRLDNNASVCIEESPMDSLAIAGSDGQRGA 1156
            ++ +   ++ ++ N+S+ I++SP+    +A +D +R A
Sbjct: 264  QKTAATAKKTVNMNSSMEIDDSPL----VAVNDTEREA 297


>XP_020086576.1 RNA polymerase II-associated protein 3 isoform X4 [Ananas comosus]
            XP_020086577.1 RNA polymerase II-associated protein 3
            isoform X4 [Ananas comosus]
          Length = 440

 Score =  184 bits (468), Expect = 3e-50
 Identities = 101/230 (43%), Positives = 152/230 (66%), Gaps = 1/230 (0%)
 Frame = +2

Query: 470  KRIPDISSR-KKNLYDDYTGNGHMGTLGSIDKVSSILKGPQDTASEALSEKEQGNEYFKN 646
            K++P + S  K N+  D+    +     +  K S+ L   ++T  +A SEKE GNEYFK 
Sbjct: 29   KKVPAVESNTKSNVASDFPAK-NPNERYNYSKYSAFLN--EETLPDATSEKELGNEYFKQ 85

Query: 647  KKYSEAIDCYTRSILLYPTAVSFANRAMAYMKVGRYAEAEYDCSEAINLDDRYVKAYSRR 826
            KK++EAIDCY+RSI L PT+V+FANRAMAY+K+ R  EAE DC+EA+NLDDRYVKAYSRR
Sbjct: 86   KKFAEAIDCYSRSIALSPTSVAFANRAMAYLKLRRLEEAENDCTEALNLDDRYVKAYSRR 145

Query: 827  GAARKELGNLIDAIDDFEFALRLEPGNKELQKHFEEAQKMNEKNLRRKLPDKKAPVRIEE 1006
              ARKELG L  +++D EFA+RLEP N+EL+K + E + + ++ + +K+     P  + E
Sbjct: 146  ATARKELGKLKQSMEDSEFAIRLEPNNQELKKQYAETKALYDQEMAKKVSQSLKP-SVSE 204

Query: 1007 ITKDSSLVCGDPKQKSGVCERRLDNNASVCIEESPMDSLAIAGSDGQRGA 1156
            I K  +L     ++ +   ++ ++ N+S+ I++SP+    +A +D +R A
Sbjct: 205  IQKADNLATYKAQKTAATAKKTVNMNSSMEIDDSPL----VAVNDTEREA 250


>GAQ89022.1 hypothetical protein KFL_004800070 [Klebsormidium flaccidum]
          Length = 644

 Score =  187 bits (475), Expect = 1e-49
 Identities = 125/387 (32%), Positives = 196/387 (50%), Gaps = 20/387 (5%)
 Frame = +2

Query: 113  NLSDKMKKNPMDFHQFVYDLQEWERSIKEKDKRIKTNRPDEKES-LPPVRA----RVES- 274
            ++  ++++N M+   ++ +L++WE   K KD+ ++        S +PP+R     R ES 
Sbjct: 3    HIQAQIRENSMELQDYLRELRDWEVKAKAKDQMLRDGGAAAPPSEVPPIRGQPVKRPESG 62

Query: 275  ----------SSKETTRPNLAAKQTSAASHTYDYFRDKWEKFDVESALKEVDEVENKQFS 424
                      S K    P    K  +AASHTYDYFRDKW+KFDV+ AL E ++   +   
Sbjct: 63   QQKAMSEATDSRKHDENPK---KGKNAASHTYDYFRDKWDKFDVDKALAEAEDESPRAIK 119

Query: 425  QKDIKSFAKQNS----RKEKRIPDISSRKKNLYDDYTGNGHMGTLGSIDKVSSILKGPQD 592
              +       ++    +    IP   + K      +      G+     + +S  +   +
Sbjct: 120  PAEAPPAKPPSNTPSVQSPAAIPAPKTAKPTSSSKFAFPNGDGSSRPAPQKASADEWTPN 179

Query: 593  TASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFANRAMAYMKVGRYAEAEYD 772
             A +A SEKE+GN  FK  ++ EA +CY+RS+ L PT+V+ ANRAMA +K+  + EAE D
Sbjct: 180  KAPDATSEKEEGNRLFKAGRFWEAFECYSRSLALSPTSVAHANRAMAALKLEMFREAETD 239

Query: 773  CSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEPGNKELQKHFEEAQKMNE 952
            C+ AI+LDD YVKAYSRRG AR  L   ++A DDFEFALRLEP NKEL + +  A+   +
Sbjct: 240  CTAAIDLDDHYVKAYSRRGRARSHLEKWLEAADDFEFALRLEPHNKELLQEYSAARIACQ 299

Query: 953  KNLRRKLPDKKAPVRIEEITKDSSLVCGDPKQKSGVCERRLDNNASVCIEESPMDSLAIA 1132
            +    KLP+    V +    K +      P  K  + +R      +   +   MD L   
Sbjct: 300  R--EAKLPNPSTAVNLP--VKPAQEAASVPLSKPSLADRIQSKEFNGKSDGLRMDFLRTV 355

Query: 1133 GSDGQRGAISTDQASPLKEISVASNSS 1213
              + +   +     S ++E+ +AS ++
Sbjct: 356  SDESK---LEVGSKSVVEEVPLASEAA 379


>XP_010938247.1 PREDICTED: RNA polymerase II-associated protein 3 isoform X1
           [Elaeis guineensis]
          Length = 452

 Score =  182 bits (463), Expect = 2e-49
 Identities = 110/283 (38%), Positives = 153/283 (54%), Gaps = 3/283 (1%)
 Frame = +2

Query: 143 MDFHQFVYDLQEWERSIKEKDKRIKTNRPDEKESLPPVRARVESSSKETTRPNLAAKQTS 322
           ++ H F+ DLQ WE  +KEKD+R+K                    S   +RP        
Sbjct: 14  LELHGFLNDLQSWEHQLKEKDQRMK------------------GQSHVNSRPGS------ 49

Query: 323 AASHTYDYFRDKWEKFDVESALKEV--DEVENKQFSQKDIKSFAKQNSRKEKRIPD-ISS 493
                    R   +  + +  LK+V  DEV+NK     ++ S          + PD +S 
Sbjct: 50  --------LRSAGKVDEDKGPLKKVPADEVKNKSNVVSEVSSRNLDERYNYLKYPDAVSH 101

Query: 494 RKKNLYDDYTGNGHMGTLGSIDKVSSILKGPQDTASEALSEKEQGNEYFKNKKYSEAIDC 673
              N Y +                        +   +A SEKE GNEYFK K++ EAI+C
Sbjct: 102 MSSNFYSE------------------------ERLPDAASEKELGNEYFKQKRFLEAIEC 137

Query: 674 YTRSILLYPTAVSFANRAMAYMKVGRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGN 853
           Y+RSI L PT+V+FANRAMAY+K+ R+ EAE +C+EA+NLDDRYVKAYSRR  ARKELG 
Sbjct: 138 YSRSIALSPTSVAFANRAMAYLKLKRFEEAENECTEALNLDDRYVKAYSRRATARKELGK 197

Query: 854 LIDAIDDFEFALRLEPGNKELQKHFEEAQKMNEKNLRRKLPDK 982
           LI +++D EFA+RLEP N+EL+K + E + + EK  + K+PD+
Sbjct: 198 LIASMEDSEFAMRLEPNNQELRKQYTETKALYEKGSKGKIPDQ 240


>XP_015874896.1 PREDICTED: RNA polymerase II-associated protein 3 isoform X3
            [Ziziphus jujuba]
          Length = 430

 Score =  180 bits (456), Expect = 1e-48
 Identities = 107/259 (41%), Positives = 152/259 (58%), Gaps = 2/259 (0%)
 Frame = +2

Query: 362  EKFDVESALKEVDEVENKQFSQKDIKSFAKQNSRKEKRIPDISSRKKNLYDDYTGNGHMG 541
            +  D E +LK+ D+    Q S K + S  K     E R      R    YD      +  
Sbjct: 12   QALDWELSLKDKDKKMRPQSSDK-VSSSGKTRVTGEDR-----KRGSGPYD------YAR 59

Query: 542  TLGSIDKVSSILKGPQDTASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFAN 721
            +  +I+ +SS      D+  +A SEKE GNEYFK KK+ EAIDCY+RSI L PTAV+FAN
Sbjct: 60   SYDAINSISSSFSS-DDSLPDAASEKELGNEYFKQKKFKEAIDCYSRSIALSPTAVAFAN 118

Query: 722  RAMAYMKVGRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEP 901
            RAMAY+K+  Y EAE DC+EA+NLDDRY+KAYSRR  ARKELG L + ++D EFA+RLEP
Sbjct: 119  RAMAYLKIKSYQEAENDCTEALNLDDRYIKAYSRRATARKELGKLKECLEDAEFAMRLEP 178

Query: 902  GNKELQKHFEEAQKMNEKNLRRK--LPDKKAPVRIEEITKDSSLVCGDPKQKSGVCERRL 1075
             N+E++K + EA+ + EKN+ +K  +  +    + +++ K  + V G       V E + 
Sbjct: 179  HNQEIKKQYSEAKSLYEKNILQKASVALENTVQKFQKVGKSDAKVNGQGTHPVSVQEIQE 238

Query: 1076 DNNASVCIEESPMDSLAIA 1132
               +   +   P+  ++IA
Sbjct: 239  GRTSDAKVNGHPIQPVSIA 257


>KQL13207.1 hypothetical protein SETIT_022241mg [Setaria italica]
          Length = 241

 Score =  174 bits (441), Expect = 2e-48
 Identities = 107/222 (48%), Positives = 138/222 (62%), Gaps = 12/222 (5%)
 Frame = +2

Query: 515  DYTG--NGHMGT-LGSID-----KVSSILKGPQDTASEALSEKEQGNEYFKNKKYSEAID 670
            +YT   NG  GT  GS       K SS L    +   +A SEKEQGNEYFK KK++EAI+
Sbjct: 2    EYTARSNGTSGTSAGSFGGPYNMKYSSYLN--DEPMPDAASEKEQGNEYFKQKKFTEAIE 59

Query: 671  CYTRSILLYPTAVSFANRAMAYMKVGRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELG 850
            CY+RSI L PTAV+FANRAMAY+K+ R+ EAE DC+EA+NLDDRY+KAYSRR  ARKELG
Sbjct: 60   CYSRSIGLSPTAVAFANRAMAYLKLRRFKEAEDDCTEALNLDDRYIKAYSRRITARKELG 119

Query: 851  NLIDAIDDFEFALRLEPGNKELQKHFEEAQKMNEKNLRRK--LPDKKAPVRIEEITKDSS 1024
             L +A+DD EFA+ LEP N EL+K + E + ++ + L +K  +P K A   +++      
Sbjct: 120  KLKEAMDDAEFAISLEPNNPELRKQYTEIKALHMEKLGKKTPVPTKHAVSGLDKPADKKD 179

Query: 1025 LVCGDP--KQKSGVCERRLDNNASVCIEESPMDSLAIAGSDG 1144
            +    P   QK    E      A+V I ESP  S +  G  G
Sbjct: 180  ITSHTPTISQKGSFMEVDSPTRAAVEIRESPGGSSSSKGGSG 221


>XP_006375724.1 hypothetical protein POPTR_0013s00980g [Populus trichocarpa]
           ERP53521.1 hypothetical protein POPTR_0013s00980g
           [Populus trichocarpa]
          Length = 260

 Score =  174 bits (442), Expect = 2e-48
 Identities = 92/195 (47%), Positives = 129/195 (66%)
 Frame = +2

Query: 386 LKEVDEVENKQFSQKDIKSFAKQNSRKEKRIPDISSRKKNLYDDYTGNGHMGTLGSIDKV 565
           LK+ D+   K+    D+K    + S  +    D SS    +YD      H     +I+++
Sbjct: 19  LKDTDKKMKKKSQASDMKIGEDERSTGKTSAVDFSS-SSGMYD------HARNFDAINRL 71

Query: 566 SSILKGPQDTASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFANRAMAYMKV 745
           S+     + T  +A +EKE GNEYFK KKY EAI+CY+RSI L PTAV++ANRAMAY+K+
Sbjct: 72  SNSFAIDESTV-DATTEKELGNEYFKQKKYKEAIECYSRSIALSPTAVAYANRAMAYLKI 130

Query: 746 GRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEPGNKELQKH 925
            R+ EAE DC+EA+NLDDRY+KAYSRR   RKELG L ++I+D EFAL+LEP N+E++K 
Sbjct: 131 KRFPEAEDDCTEALNLDDRYIKAYSRRATTRKELGKLKESIEDSEFALKLEPNNQEIKKQ 190

Query: 926 FEEAQKMNEKNLRRK 970
           + E + + EK + +K
Sbjct: 191 YAEVKSLYEKEILQK 205


>XP_015874895.1 PREDICTED: RNA polymerase II-associated protein 3 isoform X2
            [Ziziphus jujuba]
          Length = 439

 Score =  179 bits (455), Expect = 2e-48
 Identities = 107/256 (41%), Positives = 151/256 (58%), Gaps = 2/256 (0%)
 Frame = +2

Query: 371  DVESALKEVDEVENKQFSQKDIKSFAKQNSRKEKRIPDISSRKKNLYDDYTGNGHMGTLG 550
            D E +LK+ D+    Q S K + S  K     E R      R    YD      +  +  
Sbjct: 25   DWELSLKDKDKKMRPQSSDK-VSSSGKTRVTGEDR-----KRGSGPYD------YARSYD 72

Query: 551  SIDKVSSILKGPQDTASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFANRAM 730
            +I+ +SS      D+  +A SEKE GNEYFK KK+ EAIDCY+RSI L PTAV+FANRAM
Sbjct: 73   AINSISSSFSS-DDSLPDAASEKELGNEYFKQKKFKEAIDCYSRSIALSPTAVAFANRAM 131

Query: 731  AYMKVGRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEPGNK 910
            AY+K+  Y EAE DC+EA+NLDDRY+KAYSRR  ARKELG L + ++D EFA+RLEP N+
Sbjct: 132  AYLKIKSYQEAENDCTEALNLDDRYIKAYSRRATARKELGKLKECLEDAEFAMRLEPHNQ 191

Query: 911  ELQKHFEEAQKMNEKNLRRK--LPDKKAPVRIEEITKDSSLVCGDPKQKSGVCERRLDNN 1084
            E++K + EA+ + EKN+ +K  +  +    + +++ K  + V G       V E +    
Sbjct: 192  EIKKQYSEAKSLYEKNILQKASVALENTVQKFQKVGKSDAKVNGQGTHPVSVQEIQEGRT 251

Query: 1085 ASVCIEESPMDSLAIA 1132
            +   +   P+  ++IA
Sbjct: 252  SDAKVNGHPIQPVSIA 267


>XP_015874894.1 PREDICTED: RNA polymerase II-associated protein 3 isoform X1
            [Ziziphus jujuba]
          Length = 440

 Score =  179 bits (455), Expect = 2e-48
 Identities = 107/256 (41%), Positives = 151/256 (58%), Gaps = 2/256 (0%)
 Frame = +2

Query: 371  DVESALKEVDEVENKQFSQKDIKSFAKQNSRKEKRIPDISSRKKNLYDDYTGNGHMGTLG 550
            D E +LK+ D+    Q S K + S  K     E R      R    YD      +  +  
Sbjct: 25   DWELSLKDKDKKMRPQSSDK-VSSSGKTRVTGEDR-----KRGSGPYD------YARSYD 72

Query: 551  SIDKVSSILKGPQDTASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFANRAM 730
            +I+ +SS      D+  +A SEKE GNEYFK KK+ EAIDCY+RSI L PTAV+FANRAM
Sbjct: 73   AINSISSSFSS-DDSLPDAASEKELGNEYFKQKKFKEAIDCYSRSIALSPTAVAFANRAM 131

Query: 731  AYMKVGRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEPGNK 910
            AY+K+  Y EAE DC+EA+NLDDRY+KAYSRR  ARKELG L + ++D EFA+RLEP N+
Sbjct: 132  AYLKIKSYQEAENDCTEALNLDDRYIKAYSRRATARKELGKLKECLEDAEFAMRLEPHNQ 191

Query: 911  ELQKHFEEAQKMNEKNLRRK--LPDKKAPVRIEEITKDSSLVCGDPKQKSGVCERRLDNN 1084
            E++K + EA+ + EKN+ +K  +  +    + +++ K  + V G       V E +    
Sbjct: 192  EIKKQYSEAKSLYEKNILQKASVALENTVQKFQKVGKSDAKVNGQGTHPVSVQEIQEGRT 251

Query: 1085 ASVCIEESPMDSLAIA 1132
            +   +   P+  ++IA
Sbjct: 252  SDAKVNGHPIQPVSIA 267


>XP_010659703.1 PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Vitis
           vinifera]
          Length = 425

 Score =  178 bits (452), Expect = 5e-48
 Identities = 96/203 (47%), Positives = 135/203 (66%), Gaps = 3/203 (1%)
 Frame = +2

Query: 371 DVESALKEVDEVENKQFSQKDIKSFAKQNSRKEKRI---PDISSRKKNLYDDYTGNGHMG 541
           D E +LKE D+    Q  +KD+ + A+ N +   ++   P +S R      D   + +  
Sbjct: 26  DWELSLKEKDKKMKAQAEEKDVPT-ARGNVKHSSKLSSSPGVSLRLGQSRSDTRQHEYSR 84

Query: 542 TLGSIDKVSSILKGPQDTASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFAN 721
              +I ++SS     +++  +A SEKE GNEYFK +K+ EAIDCY+RSI L PTAV++AN
Sbjct: 85  NHDAISRISSSFM-TEESLPDAASEKELGNEYFKQRKFKEAIDCYSRSIALLPTAVAYAN 143

Query: 722 RAMAYMKVGRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEP 901
           RAMAY+K+ R+ EAE DC EA+NLDDRY+KAYSRR  ARKELG   +A +D EFALRLEP
Sbjct: 144 RAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELGKFKEATEDAEFALRLEP 203

Query: 902 GNKELQKHFEEAQKMNEKNLRRK 970
            N+E++K + EA+ + EK + +K
Sbjct: 204 QNQEIKKQYAEAKSLYEKEILQK 226


>OAY77359.1 RNA polymerase II-associated protein 3 [Ananas comosus]
          Length = 505

 Score =  179 bits (455), Expect = 9e-48
 Identities = 116/350 (33%), Positives = 190/350 (54%), Gaps = 12/350 (3%)
 Frame = +2

Query: 143  MDFHQFVYDLQEWERSIKEKDKRIKTNRPDEKESLPPVRARVESSSKETTRPNLAAKQTS 322
            ++   F+ +LQ W    K+K++++KT            +AR +S                
Sbjct: 12   LEVEGFLNELQGWNNLFKDKNQKLKT------------QARNDSYFYRE----------- 48

Query: 323  AASHTYDYFRDKWEKFDVESALKEVDEVENKQFSQKDIKSFAKQNSRKEKRIPDISSRKK 502
               ++Y Y       F ++ +L+   + + ++   K +   A +++ K     D  ++  
Sbjct: 49   -CYYSYGYSESNLLLFSLKGSLQNSGKSQEEKGPPKKVP--AVESNTKSNVASDFPAKNP 105

Query: 503  NLYDDYTGNGHMGTLGSIDKVSSILKGPQDTASEALSEKEQGNEYFKNKKYSEAIDCYTR 682
            N   +Y+            K S+ L   ++T  +A SEKE GNEYFK KK++EAIDCY+R
Sbjct: 106  NERYNYS------------KYSAFLN--EETLPDATSEKELGNEYFKQKKFAEAIDCYSR 151

Query: 683  SILLYPTAVSFANRAMAYMKVGRYA------------EAEYDCSEAINLDDRYVKAYSRR 826
            SI L PT+V+FANRAMAY+K+ R+             EAE DC+EA+NLDDRYVKAYSRR
Sbjct: 152  SIALSPTSVAFANRAMAYLKLRRHVALWQSLVCNQLEEAENDCTEALNLDDRYVKAYSRR 211

Query: 827  GAARKELGNLIDAIDDFEFALRLEPGNKELQKHFEEAQKMNEKNLRRKLPDKKAPVRIEE 1006
              ARKELG L  +++D EFA+RLEP N+EL+K + E + + ++ + +K+     P  + E
Sbjct: 212  ATARKELGKLKQSMEDSEFAIRLEPNNQELKKQYAETKALYDQEMAKKVSQSLKP-SVSE 270

Query: 1007 ITKDSSLVCGDPKQKSGVCERRLDNNASVCIEESPMDSLAIAGSDGQRGA 1156
            I K  +L     ++ +   ++ ++ N+S+ I++SP+    +A +D +R A
Sbjct: 271  IQKADNLATYKAQKTAATAKKTVNMNSSMEIDDSPL----VAVNDTEREA 316


>XP_002277910.2 PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Vitis
           vinifera]
          Length = 474

 Score =  178 bits (452), Expect = 1e-47
 Identities = 96/203 (47%), Positives = 135/203 (66%), Gaps = 3/203 (1%)
 Frame = +2

Query: 371 DVESALKEVDEVENKQFSQKDIKSFAKQNSRKEKRI---PDISSRKKNLYDDYTGNGHMG 541
           D E +LKE D+    Q  +KD+ + A+ N +   ++   P +S R      D   + +  
Sbjct: 26  DWELSLKEKDKKMKAQAEEKDVPT-ARGNVKHSSKLSSSPGVSLRLGQSRSDTRQHEYSR 84

Query: 542 TLGSIDKVSSILKGPQDTASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFAN 721
              +I ++SS     +++  +A SEKE GNEYFK +K+ EAIDCY+RSI L PTAV++AN
Sbjct: 85  NHDAISRISSSFM-TEESLPDAASEKELGNEYFKQRKFKEAIDCYSRSIALLPTAVAYAN 143

Query: 722 RAMAYMKVGRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEP 901
           RAMAY+K+ R+ EAE DC EA+NLDDRY+KAYSRR  ARKELG   +A +D EFALRLEP
Sbjct: 144 RAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELGKFKEATEDAEFALRLEP 203

Query: 902 GNKELQKHFEEAQKMNEKNLRRK 970
            N+E++K + EA+ + EK + +K
Sbjct: 204 QNQEIKKQYAEAKSLYEKEILQK 226


>XP_019080642.1 PREDICTED: RNA polymerase II-associated protein 3 isoform X3 [Vitis
            vinifera]
          Length = 420

 Score =  176 bits (447), Expect = 2e-47
 Identities = 113/291 (38%), Positives = 167/291 (57%), Gaps = 3/291 (1%)
 Frame = +2

Query: 371  DVESALKEVDEVENKQFSQKDIKSFAKQNSRKEKRI---PDISSRKKNLYDDYTGNGHMG 541
            D E +LKE D+    Q  +KD+ + A+ N +   ++   P +S R      D   + +  
Sbjct: 26   DWELSLKEKDKKMKAQAEEKDVPT-ARGNVKHSSKLSSSPGVSLRLGQSRSDTRQHEYSR 84

Query: 542  TLGSIDKVSSILKGPQDTASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFAN 721
               +I ++SS     +++  +A SEKE GNEYFK +K+ EAIDCY+RSI L PTAV++AN
Sbjct: 85   NHDAISRISSSFM-TEESLPDAASEKELGNEYFKQRKFKEAIDCYSRSIALLPTAVAYAN 143

Query: 722  RAMAYMKVGRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEP 901
            RAMAY+K+ R+ EAE DC EA+NLDDRY+KAYSRR  ARKELG   +A +D EFALRLEP
Sbjct: 144  RAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELGKFKEATEDAEFALRLEP 203

Query: 902  GNKELQKHFEEAQKMNEKNLRRKLPDKKAPVRIEEITKDSSLVCGDPKQKSGVCERRLDN 1081
             N+E++K + EA     K+L  K+P   +    E   K +    G+  +++G  E  + N
Sbjct: 204  QNQEIKKQYAEA-----KSLYEKVPANTSTSMEETENKGT----GNRSKENGYLENAVQN 254

Query: 1082 NASVCIEESPMDSLAIAGSDGQRGAISTDQASPLKEISVASNSSAVPLVSK 1234
                    S ++ +      GQR     +  S L+E++  + S A+   +K
Sbjct: 255  --------SGLEDVMSNHKTGQR-----EMKSSLQELASRAASRAMVEAAK 292


>KQL13209.1 hypothetical protein SETIT_022241mg [Setaria italica]
          Length = 344

 Score =  174 bits (441), Expect = 3e-47
 Identities = 107/222 (48%), Positives = 138/222 (62%), Gaps = 12/222 (5%)
 Frame = +2

Query: 515  DYTG--NGHMGT-LGSID-----KVSSILKGPQDTASEALSEKEQGNEYFKNKKYSEAID 670
            +YT   NG  GT  GS       K SS L    +   +A SEKEQGNEYFK KK++EAI+
Sbjct: 2    EYTARSNGTSGTSAGSFGGPYNMKYSSYLN--DEPMPDAASEKEQGNEYFKQKKFTEAIE 59

Query: 671  CYTRSILLYPTAVSFANRAMAYMKVGRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELG 850
            CY+RSI L PTAV+FANRAMAY+K+ R+ EAE DC+EA+NLDDRY+KAYSRR  ARKELG
Sbjct: 60   CYSRSIGLSPTAVAFANRAMAYLKLRRFKEAEDDCTEALNLDDRYIKAYSRRITARKELG 119

Query: 851  NLIDAIDDFEFALRLEPGNKELQKHFEEAQKMNEKNLRRK--LPDKKAPVRIEEITKDSS 1024
             L +A+DD EFA+ LEP N EL+K + E + ++ + L +K  +P K A   +++      
Sbjct: 120  KLKEAMDDAEFAISLEPNNPELRKQYTEIKALHMEKLGKKTPVPTKHAVSGLDKPADKKD 179

Query: 1025 LVCGDP--KQKSGVCERRLDNNASVCIEESPMDSLAIAGSDG 1144
            +    P   QK    E      A+V I ESP  S +  G  G
Sbjct: 180  ITSHTPTISQKGSFMEVDSPTRAAVEIRESPGGSSSSKGGSG 221


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