BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra29_contig00013306
         (609 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJA90767.1 DNA-directed RNA polymerase IV second largest subunit...   392   e-125
AJA90782.1 DNA-directed RNA polymerase IV second largest subunit...   239   2e-69
AJP06336.1 NRPD2, partial [Pinus tabuliformis]                        228   9e-66
AJA90774.1 DNA-directed RNA polymerase IV second largest subunit...   214   8e-61
AJA90758.1 DNA-directed RNA polymerase IV second largest subunit...   201   5e-56
XP_013615447.1 PREDICTED: DNA-directed RNA polymerases IV and V ...   162   1e-45
XP_010275247.1 PREDICTED: DNA-directed RNA polymerases IV and V ...   170   2e-45
ABG29321.1 DNA-directed RNA polymerase, putative [Solanum bulboc...   168   1e-44
AAY68206.1 RNA polymerase IV second largest subunit, partial [So...   168   1e-44
XP_015069884.1 PREDICTED: DNA-directed RNA polymerases IV and V ...   168   1e-44
XP_006351506.1 PREDICTED: DNA-directed RNA polymerases IV and V ...   168   1e-44
XP_004236361.1 PREDICTED: DNA-directed RNA polymerases IV and V ...   168   1e-44
ONM13139.1 nuclear RNA polymerase D2/E2 [Zea mays]                    167   2e-44
KNA21785.1 hypothetical protein SOVF_039620 [Spinacia oleracea]       167   2e-44
ONM13140.1 nuclear RNA polymerase D2/E2 [Zea mays]                    167   3e-44
ONM13161.1 nuclear RNA polymerase D2/E2 [Zea mays]                    167   3e-44
ONM13146.1 nuclear RNA polymerase D2/E2 [Zea mays] ONM13166.1 nu...   167   3e-44
ONM13142.1 nuclear RNA polymerase D2/E2 [Zea mays] ONM13164.1 nu...   167   3e-44
ONM13163.1 nuclear RNA polymerase D2/E2 [Zea mays]                    167   3e-44
ONM13157.1 nuclear RNA polymerase D2/E2 [Zea mays]                    167   3e-44

>AJA90767.1 DNA-directed RNA polymerase IV second largest subunit [Ephedra
           trifurca]
          Length = 1272

 Score =  392 bits (1006), Expect = e-125
 Identities = 199/202 (98%), Positives = 200/202 (99%)
 Frame = -3

Query: 607 KLNEDIKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSH 428
           KLNEDIKAK+KAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSH
Sbjct: 344 KLNEDIKAKRKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSH 403

Query: 427 EDREICEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFI 248
           EDREICEFILSSIYKAESEL DFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFP I
Sbjct: 404 EDREICEFILSSIYKAESELTDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPLI 463

Query: 247 KGQREKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKI 68
           KGQREKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKI
Sbjct: 464 KGQREKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKI 523

Query: 67  LKAIQKDLSGQKDLKSMECYID 2
           LKAIQKDLSGQKDLKSMECYID
Sbjct: 524 LKAIQKDLSGQKDLKSMECYID 545


>AJA90782.1 DNA-directed RNA polymerase IV second largest subunit [Pinus
           canariensis]
          Length = 1299

 Score =  239 bits (609), Expect = 2e-69
 Identities = 118/197 (59%), Positives = 154/197 (78%)
 Frame = -3

Query: 592 IKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREI 413
           +K +K AK        E++ +VV FF ITVPVVLLFYALG++SD EM+ ++GC  +D E+
Sbjct: 383 VKLEKTAK--------EREVLVVRFFSITVPVVLLFYALGVTSDREMMHLVGCGLDDHEM 434

Query: 412 CEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQRE 233
              +LSS+YKAE+ELK+FR++ +V  YI+ +LKN+K+P   + EEVL+AHLFP I G ++
Sbjct: 435 SNLLLSSLYKAEAELKNFRNKIEVWNYINARLKNSKFPKTENAEEVLNAHLFPLIGGHKQ 494

Query: 232 KAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQ 53
           KAM LGYMVNCLLSSY GRRQVENKDDYRNKRLELA ELLG ++++LL+  R+++ K IQ
Sbjct: 495 KAMFLGYMVNCLLSSYFGRRQVENKDDYRNKRLELASELLGHELEILLKRFRRQMAKQIQ 554

Query: 52  KDLSGQKDLKSMECYID 2
           KDLSG+KDLK ME Y D
Sbjct: 555 KDLSGRKDLKPMEFYTD 571


>AJP06336.1 NRPD2, partial [Pinus tabuliformis]
          Length = 1348

 Score =  228 bits (582), Expect = 9e-66
 Identities = 112/197 (56%), Positives = 152/197 (77%)
 Frame = -3

Query: 592  IKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREI 413
            +K +K AK         K+ + V FF +TVP+VLLFYALG+ SD EM+ ++GC+ +D E+
Sbjct: 434  VKLEKTAKG--------KEVLFVRFFGVTVPLVLLFYALGVKSDREMMHLVGCASDDYEM 485

Query: 412  CEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQRE 233
               ++SS++K E+ELKDFR++++V  YI+ +LK + +P   + EEVL+AHLFP+I G  +
Sbjct: 486  SHVLVSSLHKTEAELKDFRNKKEVWGYINLQLKKSTFPKNKNAEEVLNAHLFPYIVGHNQ 545

Query: 232  KAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQ 53
            KAM LGYMVNCLLSSY GRRQVENKDDYRNKRLELAGELL R++++LL+  R ++ K IQ
Sbjct: 546  KAMFLGYMVNCLLSSYFGRRQVENKDDYRNKRLELAGELLSRELEILLKRFRSQMTKQIQ 605

Query: 52   KDLSGQKDLKSMECYID 2
            KDLSG++DLKS+E YID
Sbjct: 606  KDLSGRRDLKSIEYYID 622


>AJA90774.1 DNA-directed RNA polymerase IV second largest subunit [Ginkgo
           biloba]
          Length = 1328

 Score =  214 bits (545), Expect = 8e-61
 Identities = 109/196 (55%), Positives = 144/196 (73%)
 Frame = -3

Query: 589 KAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREIC 410
           K K   K +E S    K  ++VSFF IT+PVVL+FYALG+SSD EM+ MI    +D E+ 
Sbjct: 407 KNKVTVKLSETSNPRRK-VLLVSFFSITIPVVLMFYALGLSSDREMIGMICNDMDDCEMM 465

Query: 409 EFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREK 230
           E +LSS+ +AE ELK FR R   L+YID ++K+ KYP   + E  LDA+ FP I G ++K
Sbjct: 466 ELLLSSLNQAEVELKGFRCRNKTLEYIDKQMKSLKYPKKETAEAALDANFFPTIVGHKQK 525

Query: 229 AMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQK 50
           AM LGYMVNCLLS Y GRRQV+NKDD+RNKRL+LAG+LLGR++++L R  R ++ K IQ+
Sbjct: 526 AMFLGYMVNCLLSCYFGRRQVDNKDDFRNKRLDLAGQLLGRELEILFRQFRTRMTKGIQR 585

Query: 49  DLSGQKDLKSMECYID 2
           +LSG+ DLK M+CY+D
Sbjct: 586 ELSGRWDLKPMDCYVD 601


>AJA90758.1 DNA-directed RNA polymerase IV second largest subunit [Cycas
           revoluta]
          Length = 1348

 Score =  201 bits (510), Expect = 5e-56
 Identities = 96/175 (54%), Positives = 135/175 (77%)
 Frame = -3

Query: 526 VSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEFILSSIYKAESELKDFRSRE 347
           V+F  +T+PVV++F+ALG+ SD EM+QM+    +D E+ E +LSSI K+E+ELKDFR R 
Sbjct: 446 VNFLSVTIPVVIMFFALGLLSDWEMMQMVCNGMDDSEMMELLLSSINKSEAELKDFRCRN 505

Query: 346 DVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAMLLGYMVNCLLSSYLGRRQV 167
             L+YI  ++KN+K+P   + EE ++A+LF  I G ++KAM LGYM+NCLL  Y  RRQV
Sbjct: 506 KSLEYIGTQMKNSKFPKKETPEEAINAYLFTSISGHKQKAMFLGYMINCLLLCYFERRQV 565

Query: 166 ENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDLSGQKDLKSMECYID 2
           E+KDD++NKRLELAGELL R++ VLLR  R ++ + IQ++LSG++DLK M+CYID
Sbjct: 566 ESKDDFKNKRLELAGELLSRELGVLLRQFRNRMSRGIQRELSGRQDLKPMDCYID 620


>XP_013615447.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
           [Brassica oleracea var. oleracea]
          Length = 333

 Score =  162 bits (411), Expect = 1e-45
 Identities = 80/194 (41%), Positives = 131/194 (67%), Gaps = 2/194 (1%)
 Frame = -3

Query: 577 KAKDNEPSYTSEKDEIVVSFFFIT--VPVVLLFYALGISSDLEMVQMIGCSHEDREICEF 404
           +  +N+ +   ++ E V++ +F++  +PV +LF+ALG++SD E V +I     D  I   
Sbjct: 75  RLSENQKAEDFKRKEKVLTVYFLSTEIPVWVLFFALGVASDKEAVDLIAFDGGDASITNS 134

Query: 403 ILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAM 224
           +++SI +A+S  +DFR   + L Y++ ++K  K+P   SV+E L  +LFP +K  ++KA 
Sbjct: 135 VVASIQEADSVCEDFRHGRNALAYVEQQIKGTKFPPGESVDECLSLYLFPGLKSLKQKAR 194

Query: 223 LLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDL 44
            LGYMV CL S+Y G+R+ EN+D++RNKR+ELAGELL R+++V L   R+ + KA+Q+ L
Sbjct: 195 FLGYMVKCLFSAYAGKRKCENRDNFRNKRIELAGELLERELRVHLAHARRTMTKAMQRHL 254

Query: 43  SGQKDLKSMECYID 2
           +G  DLK +E Y+D
Sbjct: 255 TGDGDLKPIEHYLD 268


>XP_010275247.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
           [Nelumbo nucifera]
          Length = 1201

 Score =  170 bits (431), Expect = 2e-45
 Identities = 85/187 (45%), Positives = 125/187 (66%)
 Frame = -3

Query: 562 EPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEFILSSIYK 383
           +P Y    + + V F   T+P+ +LF+ALG SSD E+V+MI     D      +LS+I  
Sbjct: 277 KPEYLQGGNVLNVYFLSSTIPLWILFFALGASSDKEIVEMIDLDISDATFVNILLSTICD 336

Query: 382 AESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAMLLGYMVN 203
           A+ + + FR     LK+ID+ +KN K+P   S+E++L+  LFP +   REKA+ LGYMV 
Sbjct: 337 ADEKCEGFRKEGKALKHIDELIKNTKFPPTDSIEDILNNSLFPALSSYREKALFLGYMVK 396

Query: 202 CLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDLSGQKDLK 23
           CLL SY GRR+ EN+DD+RNKRLELAG+LL R+++V +R  ++++ KA+QKDL G + L 
Sbjct: 397 CLLLSYTGRRKCENRDDFRNKRLELAGDLLERELRVHIRHAQRRMTKAMQKDLYGDRALH 456

Query: 22  SMECYID 2
            +E Y+D
Sbjct: 457 PIEHYLD 463


>ABG29321.1 DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
          Length = 1018

 Score =  168 bits (425), Expect = 1e-44
 Identities = 77/173 (44%), Positives = 124/173 (71%)
 Frame = -3

Query: 520 FFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEFILSSIYKAESELKDFRSREDV 341
           +FF  +P+ +LF+ALG+SSD E+V +I    +D  I   +++SI+ A+   +DFR  +  
Sbjct: 310 YFFAEMPIWVLFFALGVSSDREVVDLIDVDIKDTNIINILVASIHDADKNCEDFRKGKKA 369

Query: 340 LKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAMLLGYMVNCLLSSYLGRRQVEN 161
           L Y+D  +K+ K+P   SVEE +  +LFP + G ++KA  LGYMV CLL SY+GRR+V+N
Sbjct: 370 LAYVDRLVKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIGRRKVDN 429

Query: 160 KDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDLSGQKDLKSMECYID 2
           +DD+RNKRL+LAGELL R+++V ++   ++++KA+Q+DL G + ++ +E Y+D
Sbjct: 430 RDDFRNKRLDLAGELLERELRVHVKHAERRMVKALQRDLCGDRQVQPIEHYLD 482


>AAY68206.1 RNA polymerase IV second largest subunit, partial [Solanum
           lycopersicum]
          Length = 1123

 Score =  168 bits (425), Expect = 1e-44
 Identities = 77/173 (44%), Positives = 124/173 (71%)
 Frame = -3

Query: 520 FFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEFILSSIYKAESELKDFRSREDV 341
           +    +P+ +LF+ALG+SSD E+V +I    ED  I   +++SI++A+   +DFR  +  
Sbjct: 304 YILAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDFRKGKKA 363

Query: 340 LKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAMLLGYMVNCLLSSYLGRRQVEN 161
           L Y+D  +KN K+P   SVEE ++A+LFP + G ++KA  LGYMV CLL S++GRR+V+N
Sbjct: 364 LAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIGRRKVDN 423

Query: 160 KDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDLSGQKDLKSMECYID 2
           +DD+RNKRLELAGELL R+++  ++   ++++KA+Q+DL G + ++ +E Y+D
Sbjct: 424 RDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLD 476


>XP_015069884.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
           [Solanum pennellii]
          Length = 1217

 Score =  168 bits (425), Expect = 1e-44
 Identities = 77/173 (44%), Positives = 124/173 (71%)
 Frame = -3

Query: 520 FFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEFILSSIYKAESELKDFRSREDV 341
           +    +P+ +LF+ALG+SSD E+V +I    ED  I   +++SI++A+   +DFR  +  
Sbjct: 310 YILAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDFRKGKKA 369

Query: 340 LKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAMLLGYMVNCLLSSYLGRRQVEN 161
           L Y+D  +KN K+P   SVEE ++A+LFP + G ++KA  LGYMV CLL S++GRR+V+N
Sbjct: 370 LAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIGRRKVDN 429

Query: 160 KDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDLSGQKDLKSMECYID 2
           +DD+RNKRLELAGELL R+++  ++   ++++KA+Q+DL G + ++ +E Y+D
Sbjct: 430 RDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLD 482


>XP_006351506.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
           [Solanum tuberosum]
          Length = 1217

 Score =  168 bits (425), Expect = 1e-44
 Identities = 77/173 (44%), Positives = 124/173 (71%)
 Frame = -3

Query: 520 FFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEFILSSIYKAESELKDFRSREDV 341
           +    +P+ +LF+ALG+SSD E+V +I    ED  I   +++SI++A+   +DFR  +  
Sbjct: 310 YILAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDFRKGKKA 369

Query: 340 LKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAMLLGYMVNCLLSSYLGRRQVEN 161
           L Y+D  +KN K+P   SVEE ++A+LFP + G ++KA  LGYMV CLL S++GRR+V+N
Sbjct: 370 LAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIGRRKVDN 429

Query: 160 KDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDLSGQKDLKSMECYID 2
           +DD+RNKRLELAGELL R+++  ++   ++++KA+Q+DL G + ++ +E Y+D
Sbjct: 430 RDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLD 482


>XP_004236361.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2 [Solanum
           lycopersicum]
          Length = 1217

 Score =  168 bits (425), Expect = 1e-44
 Identities = 77/173 (44%), Positives = 124/173 (71%)
 Frame = -3

Query: 520 FFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEFILSSIYKAESELKDFRSREDV 341
           +    +P+ +LF+ALG+SSD E+V +I    ED  I   +++SI++A+   +DFR  +  
Sbjct: 310 YILAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDFRKGKKA 369

Query: 340 LKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAMLLGYMVNCLLSSYLGRRQVEN 161
           L Y+D  +KN K+P   SVEE ++A+LFP + G ++KA  LGYMV CLL S++GRR+V+N
Sbjct: 370 LAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIGRRKVDN 429

Query: 160 KDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDLSGQKDLKSMECYID 2
           +DD+RNKRLELAGELL R+++  ++   ++++KA+Q+DL G + ++ +E Y+D
Sbjct: 430 RDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLD 482


>ONM13139.1 nuclear RNA polymerase D2/E2 [Zea mays]
          Length = 773

 Score =  167 bits (422), Expect = 2e-44
 Identities = 80/182 (43%), Positives = 124/182 (68%)
 Frame = -3

Query: 547 SEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEFILSSIYKAESEL 368
           SE   I +SF + T+PV LLF+ALGISSD E+  MI     D  +   I ++I +++   
Sbjct: 94  SESKIITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDASVINTISATIKESDKLC 153

Query: 367 KDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAMLLGYMVNCLLSS 188
           +DFR  +   +Y+D+ +K++++P   S ++ +   LFP I G R KA+ LGYMV CLL +
Sbjct: 154 EDFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMA 213

Query: 187 YLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDLSGQKDLKSMECY 8
           + G+R+ +NKDD+RNKRL+L GELLGR+++  LR   K+++KAIQ+DL+  ++L+ +E Y
Sbjct: 214 FTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDLERY 273

Query: 7   ID 2
           ID
Sbjct: 274 ID 275


>KNA21785.1 hypothetical protein SOVF_039620 [Spinacia oleracea]
          Length = 1213

 Score =  167 bits (423), Expect = 2e-44
 Identities = 81/194 (41%), Positives = 130/194 (67%), Gaps = 2/194 (1%)
 Frame = -3

Query: 577 KAKDNEPSYTSEKDEIVVSFFF--ITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEF 404
           K  +N  +   +  E V+S +F  I VP+ +LF+ALG+SSD E+V++I CS +D  I   
Sbjct: 281 KLVENPKAENIQGGEKVISVYFSIIEVPIWILFFALGVSSDKEVVELIDCSTDDGRISNI 340

Query: 403 ILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAM 224
           + +SI+ A+ +   FR     ++YID  ++ +K+P   +  E L  +LFP + G ++KA 
Sbjct: 341 LFASIHDADEKCDGFRRGAKAMEYIDQMIRESKFPPDETTAEYLGKYLFPSLSGNKQKAR 400

Query: 223 LLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDL 44
            L YMV CLL ++ GRR+ +N+DD+RNKRLE A ELL R+++V +R   K+++KA+Q+DL
Sbjct: 401 FLAYMVKCLLQAFSGRRKCDNRDDFRNKRLECASELLERELRVHMRHAEKRMVKAMQRDL 460

Query: 43  SGQKDLKSMECYID 2
            G++DL+S+E Y+D
Sbjct: 461 YGERDLQSIEHYLD 474


>ONM13140.1 nuclear RNA polymerase D2/E2 [Zea mays]
          Length = 935

 Score =  167 bits (422), Expect = 3e-44
 Identities = 80/182 (43%), Positives = 124/182 (68%)
 Frame = -3

Query: 547 SEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEFILSSIYKAESEL 368
           SE   I +SF + T+PV LLF+ALGISSD E+  MI     D  +   I ++I +++   
Sbjct: 263 SESKIITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDASVINTISATIKESDKLC 322

Query: 367 KDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAMLLGYMVNCLLSS 188
           +DFR  +   +Y+D+ +K++++P   S ++ +   LFP I G R KA+ LGYMV CLL +
Sbjct: 323 EDFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMA 382

Query: 187 YLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDLSGQKDLKSMECY 8
           + G+R+ +NKDD+RNKRL+L GELLGR+++  LR   K+++KAIQ+DL+  ++L+ +E Y
Sbjct: 383 FTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDLERY 442

Query: 7   ID 2
           ID
Sbjct: 443 ID 444


>ONM13161.1 nuclear RNA polymerase D2/E2 [Zea mays]
          Length = 966

 Score =  167 bits (422), Expect = 3e-44
 Identities = 80/182 (43%), Positives = 124/182 (68%)
 Frame = -3

Query: 547 SEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEFILSSIYKAESEL 368
           SE   I +SF + T+PV LLF+ALGISSD E+  MI     D  +   I ++I +++   
Sbjct: 51  SESKIITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDASVINTISATIKESDKLC 110

Query: 367 KDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAMLLGYMVNCLLSS 188
           +DFR  +   +Y+D+ +K++++P   S ++ +   LFP I G R KA+ LGYMV CLL +
Sbjct: 111 EDFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMA 170

Query: 187 YLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDLSGQKDLKSMECY 8
           + G+R+ +NKDD+RNKRL+L GELLGR+++  LR   K+++KAIQ+DL+  ++L+ +E Y
Sbjct: 171 FTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDLERY 230

Query: 7   ID 2
           ID
Sbjct: 231 ID 232


>ONM13146.1 nuclear RNA polymerase D2/E2 [Zea mays] ONM13166.1 nuclear RNA
           polymerase D2/E2 [Zea mays]
          Length = 972

 Score =  167 bits (422), Expect = 3e-44
 Identities = 80/182 (43%), Positives = 124/182 (68%)
 Frame = -3

Query: 547 SEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEFILSSIYKAESEL 368
           SE   I +SF + T+PV LLF+ALGISSD E+  MI     D  +   I ++I +++   
Sbjct: 57  SESKIITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDASVINTISATIKESDKLC 116

Query: 367 KDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAMLLGYMVNCLLSS 188
           +DFR  +   +Y+D+ +K++++P   S ++ +   LFP I G R KA+ LGYMV CLL +
Sbjct: 117 EDFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMA 176

Query: 187 YLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDLSGQKDLKSMECY 8
           + G+R+ +NKDD+RNKRL+L GELLGR+++  LR   K+++KAIQ+DL+  ++L+ +E Y
Sbjct: 177 FTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDLERY 236

Query: 7   ID 2
           ID
Sbjct: 237 ID 238


>ONM13142.1 nuclear RNA polymerase D2/E2 [Zea mays] ONM13164.1 nuclear RNA
           polymerase D2/E2 [Zea mays] ONM13165.1 nuclear RNA
           polymerase D2/E2 [Zea mays]
          Length = 986

 Score =  167 bits (422), Expect = 3e-44
 Identities = 80/182 (43%), Positives = 124/182 (68%)
 Frame = -3

Query: 547 SEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEFILSSIYKAESEL 368
           SE   I +SF + T+PV LLF+ALGISSD E+  MI     D  +   I ++I +++   
Sbjct: 314 SESKIITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDASVINTISATIKESDKLC 373

Query: 367 KDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAMLLGYMVNCLLSS 188
           +DFR  +   +Y+D+ +K++++P   S ++ +   LFP I G R KA+ LGYMV CLL +
Sbjct: 374 EDFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMA 433

Query: 187 YLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDLSGQKDLKSMECY 8
           + G+R+ +NKDD+RNKRL+L GELLGR+++  LR   K+++KAIQ+DL+  ++L+ +E Y
Sbjct: 434 FTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDLERY 493

Query: 7   ID 2
           ID
Sbjct: 494 ID 495


>ONM13163.1 nuclear RNA polymerase D2/E2 [Zea mays]
          Length = 990

 Score =  167 bits (422), Expect = 3e-44
 Identities = 80/182 (43%), Positives = 124/182 (68%)
 Frame = -3

Query: 547 SEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEFILSSIYKAESEL 368
           SE   I +SF + T+PV LLF+ALGISSD E+  MI     D  +   I ++I +++   
Sbjct: 314 SESKIITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDASVINTISATIKESDKLC 373

Query: 367 KDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAMLLGYMVNCLLSS 188
           +DFR  +   +Y+D+ +K++++P   S ++ +   LFP I G R KA+ LGYMV CLL +
Sbjct: 374 EDFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMA 433

Query: 187 YLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDLSGQKDLKSMECY 8
           + G+R+ +NKDD+RNKRL+L GELLGR+++  LR   K+++KAIQ+DL+  ++L+ +E Y
Sbjct: 434 FTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDLERY 493

Query: 7   ID 2
           ID
Sbjct: 494 ID 495


>ONM13157.1 nuclear RNA polymerase D2/E2 [Zea mays]
          Length = 992

 Score =  167 bits (422), Expect = 3e-44
 Identities = 80/182 (43%), Positives = 124/182 (68%)
 Frame = -3

Query: 547 SEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEFILSSIYKAESEL 368
           SE   I +SF + T+PV LLF+ALGISSD E+  MI     D  +   I ++I +++   
Sbjct: 314 SESKIITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDASVINTISATIKESDKLC 373

Query: 367 KDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAMLLGYMVNCLLSS 188
           +DFR  +   +Y+D+ +K++++P   S ++ +   LFP I G R KA+ LGYMV CLL +
Sbjct: 374 EDFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMA 433

Query: 187 YLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDLSGQKDLKSMECY 8
           + G+R+ +NKDD+RNKRL+L GELLGR+++  LR   K+++KAIQ+DL+  ++L+ +E Y
Sbjct: 434 FTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDLERY 493

Query: 7   ID 2
           ID
Sbjct: 494 ID 495