BLASTX nr result
ID: Ephedra29_contig00011931
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra29_contig00011931
(224 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_006389346.1 hypothetical protein POPTR_0027s00240g [Populus t... 65 4e-12
ERN01804.1 hypothetical protein AMTR_s00089p00000590 [Amborella ... 64 1e-11
XP_013641706.1 PREDICTED: mediator of RNA polymerase II transcri... 68 1e-11
XP_013641471.1 PREDICTED: mediator of RNA polymerase II transcri... 68 1e-11
XP_013641704.1 PREDICTED: mediator of RNA polymerase II transcri... 68 1e-11
XP_013641469.1 PREDICTED: mediator of RNA polymerase II transcri... 68 1e-11
CDY36589.1 BnaA06g10420D [Brassica napus] 68 1e-11
XP_006840129.2 PREDICTED: mediator of RNA polymerase II transcri... 64 1e-11
XP_010462723.1 PREDICTED: mediator of RNA polymerase II transcri... 65 1e-11
XP_008358784.1 PREDICTED: mediator of RNA polymerase II transcri... 65 1e-11
XP_009148968.1 PREDICTED: mediator of RNA polymerase II transcri... 68 1e-11
XP_019152745.1 PREDICTED: mediator of RNA polymerase II transcri... 64 2e-11
XP_008358782.1 PREDICTED: mediator of RNA polymerase II transcri... 65 3e-11
ABK95291.1 unknown [Populus trichocarpa] 63 4e-11
XP_011044901.1 PREDICTED: mediator of RNA polymerase II transcri... 67 4e-11
XP_011044900.1 PREDICTED: mediator of RNA polymerase II transcri... 67 4e-11
XP_011044899.1 PREDICTED: mediator of RNA polymerase II transcri... 67 4e-11
XP_015938307.1 PREDICTED: LOW QUALITY PROTEIN: mediator of RNA p... 67 4e-11
XP_011044892.1 PREDICTED: mediator of RNA polymerase II transcri... 67 4e-11
XP_008353073.2 PREDICTED: mediator of RNA polymerase II transcri... 65 5e-11
>XP_006389346.1 hypothetical protein POPTR_0027s00240g [Populus trichocarpa]
ABK93884.1 unknown [Populus trichocarpa] ERP48260.1
hypothetical protein POPTR_0027s00240g [Populus
trichocarpa]
Length = 95
Score = 65.1 bits (157), Expect = 4e-12
Identities = 31/56 (55%), Positives = 42/56 (75%)
Frame = -3
Query: 192 RQRIVNRLMEILSREFPQTCVDGMQELRNIAIRFEEKSFRGSQNQYQYLQKIVIKM 25
RQRIVNR+MEIL R P + +G+QEL+ IA+RFEEK + + +Q YL+KI +KM
Sbjct: 15 RQRIVNRIMEILKRHLPFSGQEGLQELKKIAVRFEEKVYTAATSQSDYLRKISLKM 70
>ERN01804.1 hypothetical protein AMTR_s00089p00000590 [Amborella trichopoda]
Length = 107
Score = 64.3 bits (155), Expect = 1e-11
Identities = 31/64 (48%), Positives = 42/64 (65%)
Frame = -3
Query: 207 ISEHGRQRIVNRLMEILSREFPQTCVDGMQELRNIAIRFEEKSFRGSQNQYQYLQKIVIK 28
+S RQRIVN++ME L R P DG+ L IA+RFEEK F ++NQ YL+KI +K
Sbjct: 21 LSAQSRQRIVNKIMETLKRHLPAGDPDGLSVLTKIAVRFEEKIFTNAENQADYLRKISLK 80
Query: 27 MVEL 16
M+ +
Sbjct: 81 MLTM 84
>XP_013641706.1 PREDICTED: mediator of RNA polymerase II transcription subunit
15a-like isoform X2 [Brassica napus]
Length = 711
Score = 68.2 bits (165), Expect = 1e-11
Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 5/69 (7%)
Frame = -3
Query: 192 RQRIVNRLMEILSREFPQTCVDGMQELRNIAIRFEEKSFRGSQNQYQYLQKIVIKMVEL- 16
RQ+IVN++MEILSR PQ+ +G+ EL IA RFEEK F G+ NQ YL+KI +KM+ +
Sbjct: 32 RQKIVNKIMEILSRHLPQSGPEGINELMRIAARFEEKIFSGAVNQTDYLRKISMKMLAME 91
Query: 15 ----NREGP 1
N GP
Sbjct: 92 TKSQNAAGP 100
>XP_013641471.1 PREDICTED: mediator of RNA polymerase II transcription subunit
15a-like isoform X2 [Brassica napus]
Length = 711
Score = 68.2 bits (165), Expect = 1e-11
Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 5/69 (7%)
Frame = -3
Query: 192 RQRIVNRLMEILSREFPQTCVDGMQELRNIAIRFEEKSFRGSQNQYQYLQKIVIKMVEL- 16
RQ+IVN++MEILSR PQ+ +G+ EL IA RFEEK F G+ NQ YL+KI +KM+ +
Sbjct: 32 RQKIVNKIMEILSRHLPQSGPEGINELMRIAARFEEKIFSGAVNQTDYLRKISMKMLAME 91
Query: 15 ----NREGP 1
N GP
Sbjct: 92 TKSQNAAGP 100
>XP_013641704.1 PREDICTED: mediator of RNA polymerase II transcription subunit
15a-like isoform X1 [Brassica napus] XP_013641705.1
PREDICTED: mediator of RNA polymerase II transcription
subunit 15a-like isoform X1 [Brassica napus]
Length = 718
Score = 68.2 bits (165), Expect = 1e-11
Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 5/69 (7%)
Frame = -3
Query: 192 RQRIVNRLMEILSREFPQTCVDGMQELRNIAIRFEEKSFRGSQNQYQYLQKIVIKMVEL- 16
RQ+IVN++MEILSR PQ+ +G+ EL IA RFEEK F G+ NQ YL+KI +KM+ +
Sbjct: 32 RQKIVNKIMEILSRHLPQSGPEGINELMRIAARFEEKIFSGAVNQTDYLRKISMKMLAME 91
Query: 15 ----NREGP 1
N GP
Sbjct: 92 TKSQNAAGP 100
>XP_013641469.1 PREDICTED: mediator of RNA polymerase II transcription subunit
15a-like isoform X1 [Brassica napus] XP_013641470.1
PREDICTED: mediator of RNA polymerase II transcription
subunit 15a-like isoform X1 [Brassica napus]
Length = 718
Score = 68.2 bits (165), Expect = 1e-11
Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 5/69 (7%)
Frame = -3
Query: 192 RQRIVNRLMEILSREFPQTCVDGMQELRNIAIRFEEKSFRGSQNQYQYLQKIVIKMVEL- 16
RQ+IVN++MEILSR PQ+ +G+ EL IA RFEEK F G+ NQ YL+KI +KM+ +
Sbjct: 32 RQKIVNKIMEILSRHLPQSGPEGINELMRIAARFEEKIFSGAVNQTDYLRKISMKMLAME 91
Query: 15 ----NREGP 1
N GP
Sbjct: 92 TKSQNAAGP 100
>CDY36589.1 BnaA06g10420D [Brassica napus]
Length = 1199
Score = 68.2 bits (165), Expect = 1e-11
Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 5/69 (7%)
Frame = -3
Query: 192 RQRIVNRLMEILSREFPQTCVDGMQELRNIAIRFEEKSFRGSQNQYQYLQKIVIKMVEL- 16
RQ+IVN++MEILSR PQ+ +G+ EL IA RFEEK F G+ NQ YL+KI +KM+ +
Sbjct: 513 RQKIVNKIMEILSRHLPQSGPEGINELMRIAARFEEKIFSGAVNQTDYLRKISMKMLAME 572
Query: 15 ----NREGP 1
N GP
Sbjct: 573 TKSQNAAGP 581
>XP_006840129.2 PREDICTED: mediator of RNA polymerase II transcription subunit 15a,
partial [Amborella trichopoda]
Length = 112
Score = 64.3 bits (155), Expect = 1e-11
Identities = 31/64 (48%), Positives = 42/64 (65%)
Frame = -3
Query: 207 ISEHGRQRIVNRLMEILSREFPQTCVDGMQELRNIAIRFEEKSFRGSQNQYQYLQKIVIK 28
+S RQRIVN++ME L R P DG+ L IA+RFEEK F ++NQ YL+KI +K
Sbjct: 27 LSAQSRQRIVNKIMETLKRHLPAGDPDGLSVLTKIAVRFEEKIFTNAENQADYLRKISLK 86
Query: 27 MVEL 16
M+ +
Sbjct: 87 MLTM 90
>XP_010462723.1 PREDICTED: mediator of RNA polymerase II transcription subunit
15a-like, partial [Camelina sativa]
Length = 128
Score = 64.7 bits (156), Expect = 1e-11
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = -3
Query: 192 RQRIVNRLMEILSREFPQTCVDGMQELRNIAIRFEEKSFRGSQNQYQYLQKIVIKMVEL 16
RQ+IVN++ME L + FP + +G+ ELR IA RFEEK F G+ NQ YL+KI +KM+ +
Sbjct: 31 RQKIVNKIMETLKKHFPFSGPEGINELRRIAARFEEKIFSGAVNQTDYLRKISMKMLTM 89
>XP_008358784.1 PREDICTED: mediator of RNA polymerase II transcription subunit
15a-like isoform X2 [Malus domestica]
Length = 151
Score = 65.1 bits (157), Expect = 1e-11
Identities = 32/59 (54%), Positives = 42/59 (71%)
Frame = -3
Query: 192 RQRIVNRLMEILSREFPQTCVDGMQELRNIAIRFEEKSFRGSQNQYQYLQKIVIKMVEL 16
RQRIVN LM+ L R FP + DG+QEL IA+RFEEK + + +Q YL+KI +KM+ L
Sbjct: 30 RQRIVNNLMDTLKRHFPFSGQDGLQELSKIAVRFEEKIYTAATSQSDYLRKISLKMLTL 88
>XP_009148968.1 PREDICTED: mediator of RNA polymerase II transcription subunit
15a-like [Brassica rapa]
Length = 724
Score = 67.8 bits (164), Expect = 1e-11
Identities = 33/59 (55%), Positives = 44/59 (74%)
Frame = -3
Query: 192 RQRIVNRLMEILSREFPQTCVDGMQELRNIAIRFEEKSFRGSQNQYQYLQKIVIKMVEL 16
RQ+IVN++MEILSR PQ+ +G+ EL IA RFEEK F G+ NQ YL+KI +KM+ +
Sbjct: 32 RQKIVNKIMEILSRHLPQSGPEGINELMRIAARFEEKIFSGAVNQTDYLRKISMKMLAM 90
>XP_019152745.1 PREDICTED: mediator of RNA polymerase II transcription subunit
15a-like [Ipomoea nil]
Length = 129
Score = 64.3 bits (155), Expect = 2e-11
Identities = 30/62 (48%), Positives = 46/62 (74%)
Frame = -3
Query: 201 EHGRQRIVNRLMEILSREFPQTCVDGMQELRNIAIRFEEKSFRGSQNQYQYLQKIVIKMV 22
EH RQR+V+++ME L R P + V+G+QEL+ IA+RFEEK + + +Q YL+KI +KM+
Sbjct: 46 EH-RQRVVHKIMETLKRHLPFSGVEGLQELKKIAVRFEEKIYTAATDQSDYLRKITLKML 104
Query: 21 EL 16
+
Sbjct: 105 SM 106
>XP_008358782.1 PREDICTED: mediator of RNA polymerase II transcription subunit
15a-like isoform X1 [Malus domestica] XP_008358783.1
PREDICTED: mediator of RNA polymerase II transcription
subunit 15a-like isoform X1 [Malus domestica]
Length = 202
Score = 65.1 bits (157), Expect = 3e-11
Identities = 32/59 (54%), Positives = 42/59 (71%)
Frame = -3
Query: 192 RQRIVNRLMEILSREFPQTCVDGMQELRNIAIRFEEKSFRGSQNQYQYLQKIVIKMVEL 16
RQRIVN LM+ L R FP + DG+QEL IA+RFEEK + + +Q YL+KI +KM+ L
Sbjct: 30 RQRIVNNLMDTLKRHFPFSGQDGLQELSKIAVRFEEKIYTAATSQSDYLRKISLKMLTL 88
>ABK95291.1 unknown [Populus trichocarpa]
Length = 101
Score = 62.8 bits (151), Expect = 4e-11
Identities = 29/59 (49%), Positives = 43/59 (72%)
Frame = -3
Query: 192 RQRIVNRLMEILSREFPQTCVDGMQELRNIAIRFEEKSFRGSQNQYQYLQKIVIKMVEL 16
RQRIVN++ME L R P + +G+QEL+ IA+RFEEK + + +Q YL+KI +KM+ +
Sbjct: 15 RQRIVNKIMETLKRHLPFSGQEGLQELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTI 73
>XP_011044901.1 PREDICTED: mediator of RNA polymerase II transcription subunit
15a-like isoform X9 [Populus euphratica]
Length = 1041
Score = 66.6 bits (161), Expect = 4e-11
Identities = 31/64 (48%), Positives = 44/64 (68%)
Frame = -3
Query: 207 ISEHGRQRIVNRLMEILSREFPQTCVDGMQELRNIAIRFEEKSFRGSQNQYQYLQKIVIK 28
+ RQRIVN++ME L R P T +G+QEL+ IA+RFEEK + + NQ YL+KI +K
Sbjct: 26 LQPESRQRIVNKIMETLKRHLPFTGQEGLQELKKIAVRFEEKIYTAATNQSDYLRKISLK 85
Query: 27 MVEL 16
M+ +
Sbjct: 86 MLTM 89
>XP_011044900.1 PREDICTED: mediator of RNA polymerase II transcription subunit
15a-like isoform X8 [Populus euphratica]
Length = 1148
Score = 66.6 bits (161), Expect = 4e-11
Identities = 31/64 (48%), Positives = 44/64 (68%)
Frame = -3
Query: 207 ISEHGRQRIVNRLMEILSREFPQTCVDGMQELRNIAIRFEEKSFRGSQNQYQYLQKIVIK 28
+ RQRIVN++ME L R P T +G+QEL+ IA+RFEEK + + NQ YL+KI +K
Sbjct: 26 LQPESRQRIVNKIMETLKRHLPFTGQEGLQELKKIAVRFEEKIYTAATNQSDYLRKISLK 85
Query: 27 MVEL 16
M+ +
Sbjct: 86 MLTM 89
>XP_011044899.1 PREDICTED: mediator of RNA polymerase II transcription subunit
15a-like isoform X7 [Populus euphratica]
Length = 1148
Score = 66.6 bits (161), Expect = 4e-11
Identities = 31/64 (48%), Positives = 44/64 (68%)
Frame = -3
Query: 207 ISEHGRQRIVNRLMEILSREFPQTCVDGMQELRNIAIRFEEKSFRGSQNQYQYLQKIVIK 28
+ RQRIVN++ME L R P T +G+QEL+ IA+RFEEK + + NQ YL+KI +K
Sbjct: 26 LQPESRQRIVNKIMETLKRHLPFTGQEGLQELKKIAVRFEEKIYTAATNQSDYLRKISLK 85
Query: 27 MVEL 16
M+ +
Sbjct: 86 MLTM 89
>XP_015938307.1 PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II
transcription subunit 15a-like [Arachis duranensis]
Length = 1301
Score = 66.6 bits (161), Expect = 4e-11
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Frame = -3
Query: 222 ENNIWISE---HGRQRIVNRLMEILSREFPQTCVDGMQELRNIAIRFEEKSFRGSQNQYQ 52
+NN W S+ RQRIVN++M+ L R P + +G+ ELR IA RFEEK F + +Q
Sbjct: 17 DNNDWRSQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELRKIAQRFEEKIFTAATSQPD 76
Query: 51 YLQKIVIKMVELNREGP 1
YL+KI +KM+ + + P
Sbjct: 77 YLRKISLKMLTMETKNP 93
>XP_011044892.1 PREDICTED: mediator of RNA polymerase II transcription subunit
15a-like isoform X3 [Populus euphratica]
Length = 1325
Score = 66.6 bits (161), Expect = 4e-11
Identities = 31/64 (48%), Positives = 44/64 (68%)
Frame = -3
Query: 207 ISEHGRQRIVNRLMEILSREFPQTCVDGMQELRNIAIRFEEKSFRGSQNQYQYLQKIVIK 28
+ RQRIVN++ME L R P T +G+QEL+ IA+RFEEK + + NQ YL+KI +K
Sbjct: 26 LQPESRQRIVNKIMETLKRHLPFTGQEGLQELKKIAVRFEEKIYTAATNQSDYLRKISLK 85
Query: 27 MVEL 16
M+ +
Sbjct: 86 MLTM 89
>XP_008353073.2 PREDICTED: mediator of RNA polymerase II transcription subunit
15a-like [Malus domestica]
Length = 230
Score = 65.1 bits (157), Expect = 5e-11
Identities = 32/59 (54%), Positives = 42/59 (71%)
Frame = -3
Query: 192 RQRIVNRLMEILSREFPQTCVDGMQELRNIAIRFEEKSFRGSQNQYQYLQKIVIKMVEL 16
RQRIVN LM+ L R FP + DG+QEL IA+RFEEK + + +Q YL+KI +KM+ L
Sbjct: 30 RQRIVNNLMDTLKRHFPFSGQDGLQELSKIAVRFEEKIYTAATSQSDYLRKISLKMLTL 88