BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra29_contig00011807
         (767 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

OAY29319.1 hypothetical protein MANES_15G135600 [Manihot esculenta]   132   1e-31
XP_015895367.1 PREDICTED: RNA-dependent RNA polymerase 1 [Ziziph...   129   2e-30
XP_011625384.1 PREDICTED: probable RNA-dependent RNA polymerase ...   125   5e-29
ERN11375.1 hypothetical protein AMTR_s00176p00039530 [Amborella ...   125   5e-29
XP_016170571.1 PREDICTED: probable RNA-dependent RNA polymerase ...   123   3e-28
NP_001267692.1 RNA-dependent RNA polymerase 1-like [Cucumis sati...   122   4e-28
KGN50761.1 hypothetical protein Csa_5G239140 [Cucumis sativus]        122   4e-28
XP_008465250.1 PREDICTED: RNA-dependent RNA polymerase 1 [Cucumi...   122   6e-28
OAY79234.1 RNA-dependent RNA polymerase 1, partial [Ananas comosus]   122   9e-28
BAL63010.1 RNA-dependent RNA polymerase 1 [Cucumis sativus]           121   1e-27
NP_001315397.1 RNA-dependent RNA polymerase 1 [Cucumis melo] ALM...   121   1e-27
JAU85434.1 RNA-dependent RNA polymerase 1 [Noccaea caerulescens]      120   2e-27
JAU76270.1 RNA-dependent RNA polymerase 1 [Noccaea caerulescens]      120   2e-27
JAU50428.1 RNA-dependent RNA polymerase 1 [Noccaea caerulescens]      120   3e-27
AJA90762.1 RNA-dependent RNA polymerase 2 [Cycas revoluta]            120   4e-27
XP_015871329.1 PREDICTED: LOW QUALITY PROTEIN: RNA-dependent RNA...   119   5e-27
XP_015869018.1 PREDICTED: RNA-dependent RNA polymerase 1-like, p...   119   5e-27
XP_006306626.1 hypothetical protein CARUB_v10008144mg [Capsella ...   119   5e-27
JAU07878.1 RNA-dependent RNA polymerase 1 [Noccaea caerulescens]      119   5e-27
KYP49993.1 putative RNA-dependent RNA polymerase 1 [Cajanus cajan]    119   5e-27

>OAY29319.1 hypothetical protein MANES_15G135600 [Manihot esculenta]
          Length = 1132

 Score =  132 bits (333), Expect = 1e-31
 Identities = 86/230 (37%), Positives = 121/230 (52%), Gaps = 6/230 (2%)
 Frame = -2

Query: 682 MQATILPRDMVSKPRESTVLIGTKRLHFGCQVSHNGYAVLWTCDSEVQFEFASDIKKLFI 503
           ++A  +  D+V KPR     +    LHFG Q+S   + VLW   ++V   F S ++KL  
Sbjct: 77  LKARPMDLDIVPKPRTFFHSMEHITLHFGNQLSKENFYVLWK-GTDVLVNFGSGMRKLHF 135

Query: 502 ELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQLYCAPKIYYKEPSPDMGDGSW-- 329
            L+  G+ Y+L LS+ ++  +  +        YLVIQLY AP+I+ K+  P     SW  
Sbjct: 136 YLSHHGVEYKLDLSYESIWQIELHRPRGQSVKYLVIQLYGAPRIFEKDTRP-----SWNV 190

Query: 328 ----IAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRE 161
               +  FFK  SD+QWIRTTDFT +  IG+S+++CLEL    +    +++F  YK+I  
Sbjct: 191 YEDPLFNFFKDTSDDQWIRTTDFTPSCLIGHSSALCLELPSSLQVPKFQDNFAYYKEIEG 250

Query: 160 NLSLHINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPAL 11
              LH          LVP          PY+ILFQVN LVQ G L  PAL
Sbjct: 251 KFLLHSGSAFSRNLDLVPIVGPSAGFDIPYEILFQVNLLVQNGCLPGPAL 300


>XP_015895367.1 PREDICTED: RNA-dependent RNA polymerase 1 [Ziziphus jujuba]
          Length = 1126

 Score =  129 bits (325), Expect = 2e-30
 Identities = 80/229 (34%), Positives = 120/229 (52%), Gaps = 2/229 (0%)
 Frame = -2

Query: 682 MQATILPRDMVSKPRESTVLIGTKRLHFGCQVSHNGYAVLWTCDSEVQFEFASDIKKLFI 503
           + A  +  D+V+KPR     +    LHFGCQ+S   ++VLW  ++ V  +F   +++L  
Sbjct: 76  LTARSMDTDIVAKPRTYLHSLENITLHFGCQISKEKFSVLWKREN-VSVDFGIGLRRLHF 134

Query: 502 ELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQLYCAPKIYYKEPSPDMGD--GSW 329
               + + Y+L LS+ N+  +  +        YL+IQLY AP+IY K+  P  GD     
Sbjct: 135 HFMYQYVEYKLQLSYENIWQIELHRPLGQTVKYLLIQLYGAPRIYEKDV-PSSGDVYEDP 193

Query: 328 IAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLSL 149
           I  FFK   D+QW+R TDFT +  IG S+++CLEL  G +    K +F  YK+     SL
Sbjct: 194 IFNFFKDTPDDQWVRATDFTPSCRIGQSSALCLELPSGPRLPNFKENFAYYKESEGRFSL 253

Query: 148 HINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPALGRA 2
                      LVP          PY I+F++NAL+Q+G L+ P+L  A
Sbjct: 254 ETGFPFSCNLYLVPIVGPPLDVHLPYDIIFKINALLQQGCLTGPSLDAA 302


>XP_011625384.1 PREDICTED: probable RNA-dependent RNA polymerase 1 [Amborella
           trichopoda]
          Length = 1140

 Score =  125 bits (314), Expect = 5e-29
 Identities = 77/221 (34%), Positives = 121/221 (54%), Gaps = 2/221 (0%)
 Frame = -2

Query: 667 LPRDMVSKPRESTVLIGTKRLHFGCQVSHNGYAVLWTCDSEVQFEFASDIKKLFIELTDR 488
           +  D+V  PR +  ++ + +L+FG Q+S   +A+LW+ ++ V+ EF   +KK+F  L   
Sbjct: 88  MENDIVPNPRVTYHVLESIQLYFGNQISEESFAILWS-NTNVKVEFGFGLKKIFFYLAHT 146

Query: 487 GISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQLYCAPKIYYKEPS--PDMGDGSWIAEFF 314
           G+ Y+L L + N+  +      +    YLV+Q+  AP+I+ K  S   D+ D S +  ++
Sbjct: 147 GVDYKLDLYYENIWQIQLRRPGTEGTRYLVLQMQGAPRIFQKPLSFSSDIYD-SPLFNYY 205

Query: 313 KFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLSLHINXX 134
           K   D QW+R+ DFT + SIG S+S+CL L +G +   I+ +F  YK+I    +L     
Sbjct: 206 KDFPDEQWVRSIDFTPSCSIGQSSSLCLALPNGTRIPNIRENFAYYKEIGGAFNLKTGSS 265

Query: 133 XXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPAL 11
                 LVP          PYKILF+VN+LVQ G L  P L
Sbjct: 266 FSHSLHLVPIVHPPDQIKLPYKILFRVNSLVQNGFLVGPTL 306


>ERN11375.1 hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score =  125 bits (314), Expect = 5e-29
 Identities = 77/221 (34%), Positives = 121/221 (54%), Gaps = 2/221 (0%)
 Frame = -2

Query: 667 LPRDMVSKPRESTVLIGTKRLHFGCQVSHNGYAVLWTCDSEVQFEFASDIKKLFIELTDR 488
           +  D+V  PR +  ++ + +L+FG Q+S   +A+LW+ ++ V+ EF   +KK+F  L   
Sbjct: 158 MENDIVPNPRVTYHVLESIQLYFGNQISEESFAILWS-NTNVKVEFGFGLKKIFFYLAHT 216

Query: 487 GISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQLYCAPKIYYKEPS--PDMGDGSWIAEFF 314
           G+ Y+L L + N+  +      +    YLV+Q+  AP+I+ K  S   D+ D S +  ++
Sbjct: 217 GVDYKLDLYYENIWQIQLRRPGTEGTRYLVLQMQGAPRIFQKPLSFSSDIYD-SPLFNYY 275

Query: 313 KFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLSLHINXX 134
           K   D QW+R+ DFT + SIG S+S+CL L +G +   I+ +F  YK+I    +L     
Sbjct: 276 KDFPDEQWVRSIDFTPSCSIGQSSSLCLALPNGTRIPNIRENFAYYKEIGGAFNLKTGSS 335

Query: 133 XXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPAL 11
                 LVP          PYKILF+VN+LVQ G L  P L
Sbjct: 336 FSHSLHLVPIVHPPDQIKLPYKILFRVNSLVQNGFLVGPTL 376


>XP_016170571.1 PREDICTED: probable RNA-dependent RNA polymerase 1 isoform X1
           [Arachis ipaensis]
          Length = 1107

 Score =  123 bits (308), Expect = 3e-28
 Identities = 78/229 (34%), Positives = 120/229 (52%), Gaps = 2/229 (0%)
 Frame = -2

Query: 691 STRMQATILPRDMVSKPRESTVLIGTKRLHFGCQVSHNGYAVLWTCDSEVQFEFASDIKK 512
           ++R++A  + +D+V KPR S   +   +LHFGCQ+S    +VLW  + +V+  F S ++K
Sbjct: 74  NSRLKAREMMKDIVPKPRSSQHCLNNVKLHFGCQLSEERISVLWR-NMDVRLCFGSGMRK 132

Query: 511 LFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQLYCAPKIYYKEPSPDMGD-- 338
               L+     Y+L L + N+  +  +        YL+IQL  AP+I+ KE    +GD  
Sbjct: 133 FHFFLSHNNSEYKLELHYDNIWKIELHQPRDETDNYLLIQLLGAPRIFEKEEYT-LGDIY 191

Query: 337 GSWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIREN 158
              +  ++K GS++QWIR  DFT    IG ST+I +EL DG      + +F  Y++    
Sbjct: 192 DDPLFNYYKDGSNDQWIRAIDFTPCNCIGQSTAIVIELPDGQHFPDFRENFGYYEESERP 251

Query: 157 LSLHINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPAL 11
            +L           LVP          PY ILF+VN+LVQ G L+ P+L
Sbjct: 252 FTLETGAPFSSILGLVPIVTPPQGTQIPYDILFKVNSLVQHGCLAGPSL 300


>NP_001267692.1 RNA-dependent RNA polymerase 1-like [Cucumis sativus]
           XP_011654423.1 PREDICTED: RNA-dependent RNA polymerase
           1-like isoform X1 [Cucumis sativus] ADU77015.1
           RNA-dependent RNA polymerase 1a [Cucumis sativus]
           ALM88233.1 RNA-dependent RNA polymerase 1a [Cucumis
           sativus]
          Length = 1130

 Score =  122 bits (307), Expect = 4e-28
 Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 2/229 (0%)
 Frame = -2

Query: 691 STRMQATILPRDMVSKPRESTVLIGTKRLHFGCQVSHNGYAVLWTCDSEVQFEFASDIKK 512
           S+ ++A     D+V KPR     +    L FGCQVS   + VLW  + ++   F   ++K
Sbjct: 74  SSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGNVDL-VTFGIGMRK 132

Query: 511 LFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQLYCAPKIYYKEPSPDMGD-- 338
           +   L  + + YRL LS+  +  +  +        YL+IQL  AP+IY K+ +P+ G   
Sbjct: 133 MNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY-KKVAPNSGQIF 191

Query: 337 GSWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIREN 158
            + +  FFK  SD+QW+RTTDFT + SIG S+S+CL+L +G +    K +F  Y++    
Sbjct: 192 DNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQNFAYYEEFEHE 251

Query: 157 LSLHINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPAL 11
             L          R +           PYKILF++NALVQ G + WP L
Sbjct: 252 FRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300


>KGN50761.1 hypothetical protein Csa_5G239140 [Cucumis sativus]
          Length = 1172

 Score =  122 bits (307), Expect = 4e-28
 Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 2/229 (0%)
 Frame = -2

Query: 691 STRMQATILPRDMVSKPRESTVLIGTKRLHFGCQVSHNGYAVLWTCDSEVQFEFASDIKK 512
           S+ ++A     D+V KPR     +    L FGCQVS   + VLW  + ++   F   ++K
Sbjct: 74  SSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGNVDL-VTFGIGMRK 132

Query: 511 LFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQLYCAPKIYYKEPSPDMGD-- 338
           +   L  + + YRL LS+  +  +  +        YL+IQL  AP+IY K+ +P+ G   
Sbjct: 133 MNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY-KKVAPNSGQIF 191

Query: 337 GSWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIREN 158
            + +  FFK  SD+QW+RTTDFT + SIG S+S+CL+L +G +    K +F  Y++    
Sbjct: 192 DNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQNFAYYEEFEHE 251

Query: 157 LSLHINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPAL 11
             L          R +           PYKILF++NALVQ G + WP L
Sbjct: 252 FRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300


>XP_008465250.1 PREDICTED: RNA-dependent RNA polymerase 1 [Cucumis melo]
           XP_008465251.1 PREDICTED: RNA-dependent RNA polymerase 1
           [Cucumis melo] XP_008465253.1 PREDICTED: RNA-dependent
           RNA polymerase 1 [Cucumis melo] XP_008465254.1
           PREDICTED: RNA-dependent RNA polymerase 1 [Cucumis melo]
          Length = 1129

 Score =  122 bits (306), Expect = 6e-28
 Identities = 77/228 (33%), Positives = 116/228 (50%), Gaps = 1/228 (0%)
 Frame = -2

Query: 691 STRMQATILPRDMVSKPRESTVLIGTKRLHFGCQVSHNGYAVLWTCDSEVQFEFASDIKK 512
           S+ ++A     D+V KP+    ++    L FGCQVS   + VLW  + ++   F   ++K
Sbjct: 74  SSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGNVDL-VTFGIGMRK 132

Query: 511 LFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQLYCAPKIYYK-EPSPDMGDG 335
           +   L    + YRL LS+ N+  +  +S       YL+IQLY AP+IY K  PS      
Sbjct: 133 MNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIYKKVAPSSGQIFD 192

Query: 334 SWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENL 155
           + I  FF    D+QW+RTTDFT + SIG S+S+CL+L +G +    K +F  Y++     
Sbjct: 193 NPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQNFAYYEEFEHEF 252

Query: 154 SLHINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPAL 11
            L          R +           PY+I+F++NALVQ G + W  L
Sbjct: 253 RLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300


>OAY79234.1 RNA-dependent RNA polymerase 1, partial [Ananas comosus]
          Length = 3431

 Score =  122 bits (305), Expect = 9e-28
 Identities = 75/234 (32%), Positives = 120/234 (51%), Gaps = 10/234 (4%)
 Frame = -2

Query: 682 MQATILPRDMVSKPRESTVLIGTKRLHFGCQVSHNGYAVLWTCDSEVQFEFASDIKKLFI 503
           + A  + RD+V KPR S  ++    +HFGC VS   + VLW+   +V   F  +++KL++
Sbjct: 118 LMAQYMERDIVPKPRSSLFVVERTIVHFGCPVSKRSFCVLWSA-YDVHVTFGFNLRKLYL 176

Query: 502 ELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQLYCAPKIY----------YKEPS 353
             + RG+ Y+L LS+ ++  +  + +      +L+IQ+  APKIY          +K+P 
Sbjct: 177 FFSMRGLEYKLELSYESIWEIQLHRSSYQGSQFLLIQMAAAPKIYELPLCSSGLVHKDP- 235

Query: 352 PDMGDGSWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYK 173
                      +FK   D+QWIR+TDF+ + S+G S+ ICL+L    +   I   F  Y+
Sbjct: 236 --------FLNYFKETPDDQWIRSTDFSPSCSMGQSSVICLQLPYDYELPNIHEYFVFYE 287

Query: 172 DIRENLSLHINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPAL 11
           +   +  L+          LVP          PYKILF++N +VQ GI+S P L
Sbjct: 288 EFNGHYELNRGYSYSCNMELVPIVEPHPWIHVPYKILFKINQMVQNGIISGPTL 341



 Score =  118 bits (296), Expect = 1e-26
 Identities = 70/225 (31%), Positives = 116/225 (51%), Gaps = 1/225 (0%)
 Frame = -2

Query: 682  MQATILPRDMVSKPRESTVLIGTKRLHFGCQVSHNGYAVLWTCDSEVQFEFASDIKKLFI 503
            ++A  + RD+V KPR S  ++    LHFGC VS   + VLW+  S+V   F  +++K++ 
Sbjct: 2361 LKARYMERDIVPKPRSSLFVVERATLHFGCPVSKRSFCVLWSA-SDVHVNFGFNLRKIYF 2419

Query: 502  ELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQLYCAPKIY-YKEPSPDMGDGSWI 326
             L+     Y+L LS+ ++  +  + +      +L+ Q+  APKIY     S  +     +
Sbjct: 2420 FLSKGSFEYKLELSYESIWEIQLHRSSDQGSQFLLFQMAAAPKIYELPLRSSSLVQEDPL 2479

Query: 325  AEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLSLH 146
              +FK   D++WIR+TDF+ + S+G S+ ICL+L    +   I+  F  Y++   +  L+
Sbjct: 2480 LNYFKETPDDKWIRSTDFSPSCSMGQSSVICLQLPYDYELPNIREYFVFYEEFNGHYELN 2539

Query: 145  INXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPAL 11
                      LVP          PY ILF++N +VQ G +S P L
Sbjct: 2540 RGSSYSCNVELVPIVEPHPLIQVPYNILFKINQMVQNGTISGPTL 2584



 Score =  111 bits (278), Expect = 3e-24
 Identities = 72/229 (31%), Positives = 119/229 (51%), Gaps = 5/229 (2%)
 Frame = -2

Query: 682  MQATILPRDMVSKPRESTVLIGTKRLHFGCQVSHNGYAVLWTCDSEVQFEFASDIKKLFI 503
            ++A  + RD+V KPR S  ++    LHFGC V    + VLW+  S+V+  F  +++K++ 
Sbjct: 1229 LKARYMKRDIVPKPRASLFVVEHATLHFGCPVLKRSFCVLWSA-SDVRVNFGFNLRKIYF 1287

Query: 502  ELTDRGISYRLVLSFGNVR--YMHRYSTDSS--RRTYLVIQLYCAPKIYYKE-PSPDMGD 338
             ++     Y+L LS+ ++    +HR S   +  +  ++ +Q+  APKIY     S  +  
Sbjct: 1288 FVSKGSFEYKLELSYESIWEIQLHRSSDQETDFQFWFMKLQMAAAPKIYELALRSSGLVH 1347

Query: 337  GSWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIREN 158
               +  +FK   D+QWIR+TDF+ + S+G S+ ICL+L    +   I   F  Y++   +
Sbjct: 1348 EDPLLNYFKETPDDQWIRSTDFSPSCSMGQSSVICLQLPYDYELPNISEYFLFYEEFDGH 1407

Query: 157  LSLHINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPAL 11
              L+          LVP          PYKILF++N +VQ G +S P L
Sbjct: 1408 YELNSGSSYSCNMELVPIVEPHPLIQVPYKILFKINQMVQNGTISGPTL 1456


>BAL63010.1 RNA-dependent RNA polymerase 1 [Cucumis sativus]
          Length = 1115

 Score =  121 bits (303), Expect = 1e-27
 Identities = 77/228 (33%), Positives = 115/228 (50%), Gaps = 4/228 (1%)
 Frame = -2

Query: 682 MQATILPRDMVSKPRESTVLIGTKRLHFGCQVSHNGYAVLWTCDSEVQFEFASDIKKLFI 503
           ++A  +  D++  P          RLH GCQ+S   ++VLWT +S V  +F  D++KL+ 
Sbjct: 77  LKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWT-ESNVSVDFGFDVRKLYF 135

Query: 502 ELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQLYCAPKIYYKEPSPDMGDGSWIA 323
            ++   + Y LVL + N+  +  +        YL+IQL+ AP+IY +    D      I 
Sbjct: 136 FISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIYER----DARSFGLIT 191

Query: 322 E--FFKFGS--DNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENL 155
           E  F  F +  D QW R TDFT + SIG S ++CLE+L G +     + F  +K+I+   
Sbjct: 192 EDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEILYGRQLPNFHDKFAYFKEIKGKF 251

Query: 154 SLHINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPAL 11
           +L           LVP          PY ILF++N LVQ+G L  PAL
Sbjct: 252 TLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPAL 299


>NP_001315397.1 RNA-dependent RNA polymerase 1 [Cucumis melo] ALM88236.1
           RNA-dependent RNA polymerase 1a [Cucumis melo]
          Length = 1129

 Score =  121 bits (303), Expect = 1e-27
 Identities = 77/228 (33%), Positives = 115/228 (50%), Gaps = 1/228 (0%)
 Frame = -2

Query: 691 STRMQATILPRDMVSKPRESTVLIGTKRLHFGCQVSHNGYAVLWTCDSEVQFEFASDIKK 512
           S+ ++A     D+V KP+     +    L FGCQVS   + VLW  + ++   F   ++K
Sbjct: 74  SSYLKARSTEVDIVPKPKTYMYTLKDLLLCFGCQVSSEKFRVLWEGNVDL-VTFGIGMRK 132

Query: 511 LFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQLYCAPKIYYK-EPSPDMGDG 335
           +   L    + YRL LS+ N+  +  +S       YL+IQLY AP+IY K  PS      
Sbjct: 133 MNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIYKKVAPSSGQIFD 192

Query: 334 SWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENL 155
           + I  FF    D+QW+RTTDFT + SIG S+S+CL+L +G +    K +F  Y++     
Sbjct: 193 NPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQNFAYYEEFEHEF 252

Query: 154 SLHINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPAL 11
            L          R +           PY+I+F++NALVQ G + W  L
Sbjct: 253 RLIDEGASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300


>JAU85434.1 RNA-dependent RNA polymerase 1 [Noccaea caerulescens]
          Length = 1109

 Score =  120 bits (302), Expect = 2e-27
 Identities = 91/255 (35%), Positives = 127/255 (49%), Gaps = 8/255 (3%)
 Frame = -2

Query: 751 AIVQLDRSFLARKLCTTLP-----ASTRMQATILPRDMVSKPRESTVLIGTKRLHFGCQV 587
           AIVQ      AR + T          + ++A  + +D+V KPR S   I   +++FGCQV
Sbjct: 49  AIVQFTSERHARLIITRAAQRLYYGRSYLKAFEVEQDIVPKPRASLHKISDLKMYFGCQV 108

Query: 586 SHNGYAVLWTCDSEVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRT 407
           S    +VLW+  + V   F + ++KL   ++     YRL L + N+  +  +S       
Sbjct: 109 SPKKLSVLWSAQN-VGVSFGTGMRKLHFSMSWYEKEYRLELPYENIWQIDLHSPQGRPSK 167

Query: 406 YLVIQLYCAPKIYYKEPSP-DMGDGSWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICL 230
           +LVIQ+  APKI+ KE  P  +  G +  +F+  GSD QWIRTTDFT +  IG STS CL
Sbjct: 168 FLVIQVIGAPKIFEKEEQPASLLFGMF--DFYSDGSDEQWIRTTDFTSSSRIGQSTSFCL 225

Query: 229 ELLDGAKDAVIKNSFYNYKDIRENLSL--HINXXXXXXSRLVPSXXXXXXXXXPYKILFQ 56
           EL         K +F NY +      L    +      + LVP          P++ILF 
Sbjct: 226 ELPRHLNVPDFKENFANYAEHEAGSFLVESGSSYSSNANELVPVVDPPPGIDLPFEILFA 285

Query: 55  VNALVQEGILSWPAL 11
           VNALVQ G L  PAL
Sbjct: 286 VNALVQHGCLPGPAL 300


>JAU76270.1 RNA-dependent RNA polymerase 1 [Noccaea caerulescens]
          Length = 1109

 Score =  120 bits (302), Expect = 2e-27
 Identities = 91/255 (35%), Positives = 127/255 (49%), Gaps = 8/255 (3%)
 Frame = -2

Query: 751 AIVQLDRSFLARKLCTTLP-----ASTRMQATILPRDMVSKPRESTVLIGTKRLHFGCQV 587
           AIVQ      AR + T          + ++A  + +D+V KPR S   I   +++FGCQV
Sbjct: 49  AIVQFTSERHARLIITRAAQRLDYGRSYLKAFEVEQDIVPKPRASLHKISDLKMYFGCQV 108

Query: 586 SHNGYAVLWTCDSEVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRT 407
           S    +VLW+  + V   F + ++KL   ++     YRL L + N+  +  +S       
Sbjct: 109 SPKKLSVLWSAQN-VGVSFGTGMRKLHFSMSWYEKDYRLELPYENIWQIDLHSPRGGPSK 167

Query: 406 YLVIQLYCAPKIYYKEPSP-DMGDGSWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICL 230
           +LVIQ+  APKI+ KE  P  +  G +  +F+  GSD QWIRTTDFT +  IG STS CL
Sbjct: 168 FLVIQVIGAPKIFEKEEQPASLLFGMY--DFYSDGSDEQWIRTTDFTSSSRIGQSTSFCL 225

Query: 229 ELLDGAKDAVIKNSFYNYKDIRENLSL--HINXXXXXXSRLVPSXXXXXXXXXPYKILFQ 56
           EL         K +F NY +      L    +      + LVP          P++ILF 
Sbjct: 226 ELPRHLNVPDFKENFANYAEHEAGSFLVESGSSYSSNANELVPVVDPPPGIDLPFEILFA 285

Query: 55  VNALVQEGILSWPAL 11
           VNALVQ G L  PAL
Sbjct: 286 VNALVQHGCLPGPAL 300


>JAU50428.1 RNA-dependent RNA polymerase 1 [Noccaea caerulescens]
          Length = 1109

 Score =  120 bits (301), Expect = 3e-27
 Identities = 84/227 (37%), Positives = 118/227 (51%), Gaps = 3/227 (1%)
 Frame = -2

Query: 682 MQATILPRDMVSKPRESTVLIGTKRLHFGCQVSHNGYAVLWTCDSEVQFEFASDIKKLFI 503
           ++A  + +D+V KPR S   I   +++FGCQVS    +VLW+  + V   F + ++KL  
Sbjct: 77  LKAFEVEQDIVPKPRASLHKISDLKMYFGCQVSPEKLSVLWSAQN-VGVSFGTGMRKLHF 135

Query: 502 ELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQLYCAPKIYYKEPSP-DMGDGSWI 326
            ++     YRL L + N+  +  +S       +LVIQ+  APKI+ KE  P  +  G + 
Sbjct: 136 SMSWYEKDYRLELPYENIWQIDLHSPQGRPSKFLVIQVIGAPKIFEKEEQPASLLFGMF- 194

Query: 325 AEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIREN--LS 152
            +F+  GSD QWIRTTDFT +  IG STS CLEL         K +F NY +      L 
Sbjct: 195 -DFYSDGSDEQWIRTTDFTSSSRIGQSTSFCLELPRHLNVPDFKENFANYAEHEAGSFLV 253

Query: 151 LHINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPAL 11
              +      + LVP          P++ILF VNALVQ G L  PAL
Sbjct: 254 QSGSSYSSNANELVPVVDPPPGIDLPFEILFAVNALVQHGCLPGPAL 300


>AJA90762.1 RNA-dependent RNA polymerase 2 [Cycas revoluta]
          Length = 1117

 Score =  120 bits (300), Expect = 4e-27
 Identities = 83/222 (37%), Positives = 115/222 (51%), Gaps = 2/222 (0%)
 Frame = -2

Query: 670 ILPRDMVSKPRESTVLIGTKRLHFGCQVSHNGYAVLWTCDSEVQFEFASDIKKLFIELTD 491
           I+PR M    RE++V  G  RLH GC V H+ + VLW+  + V  EF  + +KL   L++
Sbjct: 89  IIPRPMC---RENSVPGG--RLHVGCPVYHDAFYVLWS-STNVVAEFVPEREKLNFFLSE 142

Query: 490 RGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQLYCAPKIYYKEPSPDMGD--GSWIAEF 317
            G+ Y+L + F ++   H  +    R   +++QL  AP+IY+K     +    G     F
Sbjct: 143 GGMEYKLEVFFQDIIQTHACTLQGRRTKAILLQLQSAPRIYHKMALHKLSSMFGEDRYNF 202

Query: 316 FKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLSLHINX 137
            K  S  QWIRTTDF+   SIG STS CLEL  G + A I      Y+ + E L+L    
Sbjct: 203 CKEDSAIQWIRTTDFSAFCSIGQSTSFCLELPYGVEVAQITEILPYYRSMEEELTLENGI 262

Query: 136 XXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPAL 11
                  +VP          PY+I+FQVN+LV  GILS P L
Sbjct: 263 SISSSLSMVPIINAPEGVNLPYEIMFQVNSLVHRGILSLPTL 304


>XP_015871329.1 PREDICTED: LOW QUALITY PROTEIN: RNA-dependent RNA polymerase
           1-like, partial [Ziziphus jujuba]
          Length = 854

 Score =  119 bits (299), Expect = 5e-27
 Identities = 77/226 (34%), Positives = 119/226 (52%), Gaps = 2/226 (0%)
 Frame = -2

Query: 682 MQATILPRDMVSKPRESTVLIGTKRLHFGCQVSHNGYAVLWTCDSEVQFEFASDIKKLFI 503
           ++A ++  D+V KPR     +    L+FGCQVS   ++VLW  +  V  EF + +++L  
Sbjct: 77  IKARVMEVDIVPKPRTILHRLQNITLYFGCQVSREKFSVLWK-EVNVSVEFGNGLRQLHF 135

Query: 502 ELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQLYCAPKIYYKE--PSPDMGDGSW 329
               + I Y+L LS+ N+  +  +        YL+IQL  AP+IY K+   S ++ +G +
Sbjct: 136 YFKHQHIEYKLQLSYENLWQIQLWRPRREAVKYLLIQLLGAPRIYKKDVCSSSNVYEGPF 195

Query: 328 IAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLSL 149
            + FFK   D+QW+R  DFT +  IG S+S+CLEL  G +    + +F  YK+     SL
Sbjct: 196 -SNFFKDTLDDQWVRAIDFTPSCCIGQSSSLCLELPSGPQLPNFRENFAYYKENGGRFSL 254

Query: 148 HINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPAL 11
                      LVP          PY ILF++N+L+Q G L+ P L
Sbjct: 255 EPGSSFSCSLDLVPIVGPPLGVDLPYGILFKINSLLQHGCLTGPTL 300


>XP_015869018.1 PREDICTED: RNA-dependent RNA polymerase 1-like, partial [Ziziphus
           jujuba]
          Length = 854

 Score =  119 bits (299), Expect = 5e-27
 Identities = 77/226 (34%), Positives = 119/226 (52%), Gaps = 2/226 (0%)
 Frame = -2

Query: 682 MQATILPRDMVSKPRESTVLIGTKRLHFGCQVSHNGYAVLWTCDSEVQFEFASDIKKLFI 503
           ++A ++  D+V KPR     +    L+FGCQVS   ++VLW  +  V  EF + +++L  
Sbjct: 77  IKARVMEVDIVPKPRTILHRLQNITLYFGCQVSREKFSVLWK-EVNVSVEFGNGLRQLHF 135

Query: 502 ELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQLYCAPKIYYKE--PSPDMGDGSW 329
               + I Y+L LS+ N+  +  +        YL+IQL  AP+IY K+   S ++ +G +
Sbjct: 136 YFKHQHIEYKLQLSYENLWQIQLWRPRREAVKYLLIQLLGAPRIYKKDVCSSSNVYEGPF 195

Query: 328 IAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLSL 149
            + FFK   D+QW+R  DFT +  IG S+S+CLEL  G +    + +F  YK+     SL
Sbjct: 196 -SNFFKDTLDDQWVRAIDFTPSCCIGQSSSLCLELPSGPQLPNFRENFAYYKENGGRFSL 254

Query: 148 HINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPAL 11
                      LVP          PY ILF++N+L+Q G L+ P L
Sbjct: 255 EPGSSFSCSLDLVPIVGPPLGVDLPYGILFKINSLLQHGCLTGPTL 300


>XP_006306626.1 hypothetical protein CARUB_v10008144mg [Capsella rubella]
           EOA39524.1 hypothetical protein CARUB_v10008144mg
           [Capsella rubella]
          Length = 1107

 Score =  119 bits (299), Expect = 5e-27
 Identities = 87/254 (34%), Positives = 127/254 (50%), Gaps = 7/254 (2%)
 Frame = -2

Query: 751 AIVQLDRSFLARKLCTTLP-----ASTRMQATILPRDMVSKPRESTVLIGTKRLHFGCQV 587
           AIVQ      AR + T          + ++A  + +D+V KPR S   I   +++FGCQV
Sbjct: 49  AIVQFTSERHARLIITMAAERLYYGRSYLKAFEMEQDIVPKPRASLHSISNLKMYFGCQV 108

Query: 586 SHNGYAVLWTCDSEVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRT 407
           S      LW+  + V   F + ++KL   ++     YRL LS+ N+  +  +S       
Sbjct: 109 SPKKLLTLWSAHN-VCVSFGTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHSPQGGSSK 167

Query: 406 YLVIQLYCAPKIYYKEPSPDMGDGSWIAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLE 227
           +LVIQ+  APKI+ KE  P +     + +F+  GSD QWIRTTDFT +  IG ST+ CLE
Sbjct: 168 FLVIQVIGAPKIFEKEDQP-VNFLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLE 226

Query: 226 LLDGAKDAVIKNSFYNYKDIRENLSL--HINXXXXXXSRLVPSXXXXXXXXXPYKILFQV 53
           L         + +F NY + R +  L    +      ++LVP          P++ILF+V
Sbjct: 227 LPVHVHVPDFRENFANYAEHRASTFLIQSGSSYSSNANKLVPVVDPPPGFDLPFEILFKV 286

Query: 52  NALVQEGILSWPAL 11
           N LVQ   L  PAL
Sbjct: 287 NTLVQNACLPGPAL 300


>JAU07878.1 RNA-dependent RNA polymerase 1 [Noccaea caerulescens]
          Length = 1109

 Score =  119 bits (299), Expect = 5e-27
 Identities = 84/227 (37%), Positives = 118/227 (51%), Gaps = 3/227 (1%)
 Frame = -2

Query: 682 MQATILPRDMVSKPRESTVLIGTKRLHFGCQVSHNGYAVLWTCDSEVQFEFASDIKKLFI 503
           ++A  + +D+V KPR S   I   +++FGCQVS    +VLW+  + V   F + ++KL  
Sbjct: 77  LKAFEVEQDIVPKPRASLHKISDLKMYFGCQVSPKKLSVLWSAQN-VGVSFGTGMRKLHF 135

Query: 502 ELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQLYCAPKIYYKEPSP-DMGDGSWI 326
            ++     YRL L + N+  +  +S       +LVIQ+  APKI+ KE  P  +  G + 
Sbjct: 136 SMSWYEKEYRLELPYENIWQIDLHSPRGRPSKFLVIQVIGAPKIFEKEEQPASLLFGMF- 194

Query: 325 AEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLSL- 149
            +F+  GSD QWIRTTDFT +  IG STS CLEL         K +F NY +      L 
Sbjct: 195 -DFYSDGSDEQWIRTTDFTSSSRIGQSTSFCLELPRHLNVPDFKENFANYAEHEAGSFLV 253

Query: 148 -HINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPAL 11
              +      + LVP          P++ILF VNALVQ G L  PAL
Sbjct: 254 ESGSSYSSNANELVPVVDPPPGIDLPFEILFAVNALVQHGCLPGPAL 300


>KYP49993.1 putative RNA-dependent RNA polymerase 1 [Cajanus cajan]
          Length = 1126

 Score =  119 bits (299), Expect = 5e-27
 Identities = 76/229 (33%), Positives = 117/229 (51%), Gaps = 5/229 (2%)
 Frame = -2

Query: 682 MQATILPRDMVSKPRESTVLIGTKRLHFGCQVSHNGYAVLWTCDSEVQFEFASDIKKLFI 503
           ++A  + RD+V KPR     +   +L+FGCQ+S   + VLW    +V   F S ++K+  
Sbjct: 80  LKAREMERDIVPKPRNFLHSLEDVKLYFGCQISKGRFYVLWEM-LDVSINFGSGMRKVHF 138

Query: 502 ELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQLYCAPKIYYKE--PSPDMGDGSW 329
             +   + Y+L LS+ N+  +  +   +    YL+IQL  AP+++  +   S ++ +  +
Sbjct: 139 LFSHNNVQYKLELSYENIWKIELHRPWAEAARYLLIQLLGAPRVFVNDVPTSENLFENMF 198

Query: 328 ---IAEFFKFGSDNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIREN 158
              +  F+K G D QWIR  DFT    IG ST+ICLEL  G +    K +F  Y++    
Sbjct: 199 DSPLFNFYKDGLDEQWIRAIDFTTYSCIGQSTAICLELPCGQQLPNFKENFGYYEESNRQ 258

Query: 157 LSLHINXXXXXXSRLVPSXXXXXXXXXPYKILFQVNALVQEGILSWPAL 11
            +L           LVP          PY ILF+VN+LVQ G L+ PAL
Sbjct: 259 YTLQTGVPFSQNVGLVPIVAPPQGFDIPYDILFKVNSLVQHGCLAGPAL 307