BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra29_contig00011321
         (1983 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_009601650.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   231   2e-64
XP_019230135.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   230   3e-64
XP_016564454.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   229   7e-64
XP_009785134.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   227   4e-63
OAY48414.1 hypothetical protein MANES_06G157400 [Manihot esculenta]   223   1e-62
XP_010671515.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   226   1e-62
XP_006350582.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   225   2e-62
XP_015070568.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   225   3e-62
XP_019415367.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   224   5e-62
XP_004234179.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   224   5e-62
AKC88754.1 sigma factor [Pelargonium fulgidum]                        224   8e-62
XP_002268709.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   224   8e-62
AKC88759.1 sigma factor [Pelargonium transvaalense]                   223   1e-61
JAU99365.1 RNA polymerase sigma factor sigE, chloroplastic/mitoc...   223   1e-61
JAU61612.1 RNA polymerase sigma factor sigE, chloroplastic/mitoc...   223   1e-61
JAU52807.1 RNA polymerase sigma factor sigE, chloroplastic/mitoc...   223   1e-61
OMO75948.1 RNA polymerase sigma-70 [Corchorus capsularis]             222   3e-61
XP_007038959.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   222   3e-61
XP_006422121.1 hypothetical protein CICLE_v10004760mg [Citrus cl...   222   4e-61
AKC88747.1 sigma factor [Monsonia marlothii]                          221   5e-61

>XP_009601650.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nicotiana tomentosiformis]
            XP_016512797.1 PREDICTED: RNA polymerase sigma factor
            sigE, chloroplastic/mitochondrial-like [Nicotiana
            tabacum]
          Length = 519

 Score =  231 bits (588), Expect = 2e-64
 Identities = 144/385 (37%), Positives = 216/385 (56%), Gaps = 2/385 (0%)
 Frame = -2

Query: 1391 NGSRRQKRLSLDTRRALNLQKIENSKKGSKAQLGRKKRENNENAIDIDFWDKEIDKLIKE 1212
            N  ++ KRL+LD R AL    ++N  K  +     +KRE  E     D  D++IDKL++E
Sbjct: 153  NRRKKSKRLNLDQRIAL----LKN--KEGELVASSQKRELKE-----DTEDEKIDKLVRE 201

Query: 1211 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1032
            YS      SLDW  +    VL  SEH WL +LMQPMK   + ++ L+  +GREP D EVA
Sbjct: 202  YSGATDLASLDWKKMKIPPVLPSSEHAWLFKLMQPMKAILQVKENLQNDLGREPTDAEVA 261

Query: 1031 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 858
            +A  +    +R++++ G+AARNKLI+ NL+LVL+ +  Y Q+F+N        +F DLC 
Sbjct: 262  EATNIDASELRKNLEVGRAARNKLIKHNLRLVLFVINKYFQDFANGP------KFQDLCQ 315

Query: 857  AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXXXXX 678
            AG++GL+ A+DRF+P RK R STY  FWIRH + +++   S   +P  +           
Sbjct: 316  AGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKVPFGLESIRVEIQKAK 375

Query: 677  XXXRSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTKVDLENIADENEGPLSWWIDNG 498
                    R PT EE+   ++L PE++ +V K +     +   ++  + E        +G
Sbjct: 376  LQLLFELQRMPTDEEIIERVRLSPERYHEVMKVSKPVFSLHARHMTTQEEFINGITDVDG 435

Query: 497  SYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISN 318
               +K   P   RL     +DD+L SL P+E  +I++RYG +GK  ++L E A  L IS 
Sbjct: 436  VDGVKRKQPALLRLA----LDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISR 491

Query: 317  EMVRKEENKAFSKLRDPSRIDFLKQ 243
            EMVRK E KA  KL+ P+R+D+L++
Sbjct: 492  EMVRKHEVKALMKLKHPTRVDYLRR 516


>XP_019230135.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nicotiana attenuata]
            OIT06417.1 rna polymerase sigma factor sige,
            chloroplasticmitochondrial [Nicotiana attenuata]
          Length = 518

 Score =  230 bits (587), Expect = 3e-64
 Identities = 144/385 (37%), Positives = 214/385 (55%), Gaps = 2/385 (0%)
 Frame = -2

Query: 1391 NGSRRQKRLSLDTRRALNLQKIENSKKGSKAQLGRKKRENNENAIDIDFWDKEIDKLIKE 1212
            N  ++ KRL+LD R AL   K       S+    RK +E+ E        D++IDKL++E
Sbjct: 152  NRRKKSKRLNLDQRIALLKNKEGELVASSQ---NRKLKEDTE--------DEKIDKLVRE 200

Query: 1211 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1032
            YS      SLDW  +    VL  SEH WL +LMQPMK   + ++ L+  +GREP D EVA
Sbjct: 201  YSGATDLASLDWKKMKIPPVLPSSEHAWLFKLMQPMKAILQVKENLQNDLGREPTDAEVA 260

Query: 1031 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 858
            +A  +    +R++++ G+AARNKLI+ NL+LVL+ +  Y Q+F+N        +F DLC 
Sbjct: 261  EATNIDASELRKNLEVGRAARNKLIKHNLRLVLFVINKYFQDFANGP------KFQDLCQ 314

Query: 857  AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXXXXX 678
            AG++GL+ A+DRF+P RK R STY  FWIRH + +++   S   +P  +           
Sbjct: 315  AGVKGLITAVDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKVPFGLESIRVEIQKAK 374

Query: 677  XXXRSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTKVDLENIADENEGPLSWWIDNG 498
                    R PT EE+   ++L PE++ +V K +     +   ++  + E        +G
Sbjct: 375  LQLLFELQRMPTDEEIIERVRLSPERYHEVMKVSKPVFSLHARHMTTQEEFINGITDVDG 434

Query: 497  SYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISN 318
                K   P   RL     +DD+L SL P+E  +I++RYG +GK +++L E A  L IS 
Sbjct: 435  VDGDKRRQPALLRLA----LDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISR 490

Query: 317  EMVRKEENKAFSKLRDPSRIDFLKQ 243
            EMVRK E KA  KL+ P+R+D+L+Q
Sbjct: 491  EMVRKHEVKALMKLKHPTRVDYLRQ 515


>XP_016564454.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Capsicum annuum]
          Length = 516

 Score =  229 bits (584), Expect = 7e-64
 Identities = 142/387 (36%), Positives = 214/387 (55%), Gaps = 4/387 (1%)
 Frame = -2

Query: 1391 NGSRRQKRLSLDTRRALNLQKIENSKKGSKAQLGRKKRENNENAIDIDFWDKEIDKLIKE 1212
            N  ++ KRL+LD R AL   K       S+    RK +E+ E        D++IDKL++E
Sbjct: 150  NRRKKSKRLNLDQRIALLKNKDGEMVTSSER---RKLKEDTE--------DEKIDKLVRE 198

Query: 1211 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1032
            YS      SLDW  +    VL  SEH WL +LMQPMK   + ++ L+  +GREP D EVA
Sbjct: 199  YSGATDLASLDWKKMKIPPVLPSSEHAWLFKLMQPMKAVLQVKENLQSDLGREPTDGEVA 258

Query: 1031 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 858
             A  +    +R+ ++ G+AARNKLI+ NL+LVL+ +  Y Q+F+N         F DLC 
Sbjct: 259  DATSMDASELRKKLEVGRAARNKLIKHNLRLVLFVMNKYFQDFANGS------RFQDLCQ 312

Query: 857  AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXXXXX 678
            AG++GL+ A+DRF+P RK R STY  FWIRH + +++   S   +P  +           
Sbjct: 313  AGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKVPFGLESIRVEIQKAK 372

Query: 677  XXXRSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTKVDLENIADENEGPLSWWIDNG 498
                    R PT+EE+   + L PE++ +V K +   + +   N+  + E      + NG
Sbjct: 373  LELLFELQRVPTEEEIIETVGLSPERYHEVMKVSKPVSSLHARNMTTQEE------LING 426

Query: 497  SYPIK--ENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGI 324
               +   + D       ++  +DD+L SL P+E  +I++RYG +GK +++L E A  L I
Sbjct: 427  ITDVDGVDGDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNI 486

Query: 323  SNEMVRKEENKAFSKLRDPSRIDFLKQ 243
            S EMVRK E KA  KL+ P+R+D+L++
Sbjct: 487  SREMVRKHEVKALMKLKHPTRVDYLRR 513


>XP_009785134.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nicotiana sylvestris]
            XP_016473301.1 PREDICTED: RNA polymerase sigma factor
            sigE, chloroplastic/mitochondrial-like [Nicotiana
            tabacum]
          Length = 519

 Score =  227 bits (579), Expect = 4e-63
 Identities = 141/387 (36%), Positives = 217/387 (56%), Gaps = 4/387 (1%)
 Frame = -2

Query: 1391 NGSRRQKRLSLDTRRALNLQKIENSKKGSKAQLGRKKRENNENAIDIDFWDKEIDKLIKE 1212
            N  ++ KRL+LD R AL    ++N  K  +     +KRE  E     D  D++IDKL++E
Sbjct: 153  NRRKKSKRLNLDQRIAL----LKN--KEGELVASSQKRELKE-----DTEDEKIDKLVRE 201

Query: 1211 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1032
            YS      SLDW  +    VL  SEH WL +LMQPMK   + ++ L+  +GREP D E A
Sbjct: 202  YSGATDLASLDWKKMKIPPVLPSSEHAWLFKLMQPMKAILQVKENLQNDLGREPTDAEAA 261

Query: 1031 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 858
            +A  +    +R++++ G+AARNKLI+ NL+LVL+ +  Y Q+F+N        +F DLC 
Sbjct: 262  EATNIDASELRKNLEVGRAARNKLIKHNLRLVLFVINKYFQDFANGP------KFQDLCQ 315

Query: 857  AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXXXXX 678
            AG++GL+ A+DRF+P RK R STY  FWIRH + +++   S   +P  +           
Sbjct: 316  AGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKVPFGLESIRVEIQKAK 375

Query: 677  XXXRSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTKVDLENIADENEGPLSWWIDNG 498
                    R PT EE+   ++L PE++ +V K +     +   ++  + E      + NG
Sbjct: 376  LQLLFELQRMPTDEEIIERVRLSPERYHEVMKVSKPVFSLHARHMTTQEE------LING 429

Query: 497  SYPIK--ENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGI 324
               +   + D       ++  +DD+L SL P+E  +I++RYG +GK +++L E A  L I
Sbjct: 430  ITDVDGVDGDKRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNI 489

Query: 323  SNEMVRKEENKAFSKLRDPSRIDFLKQ 243
            S EMVRK E KA  KL+ P+R+D+L++
Sbjct: 490  SREMVRKHEVKALMKLKHPTRVDYLRR 516


>OAY48414.1 hypothetical protein MANES_06G157400 [Manihot esculenta]
          Length = 422

 Score =  223 bits (569), Expect = 1e-62
 Identities = 135/385 (35%), Positives = 212/385 (55%), Gaps = 2/385 (0%)
 Frame = -2

Query: 1391 NGSRRQKRLSLDTRRALNLQKIENSKKGSKAQLGRKKRENNENAIDIDFWDKEIDKLIKE 1212
            N +++ KRLSLD R A+    IE         + RK    NE        D++ID+L+++
Sbjct: 59   NPAKKTKRLSLDERIAMRKNTIEEVV----TPIRRKTGAQNE--------DEKIDELVRD 106

Query: 1211 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1032
            YS      SLDW  +    VL  +EH WL +LMQPMK   + + KL+  +GREPN+ E+A
Sbjct: 107  YSASTDLVSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLQVKDKLQKKLGREPNEGELA 166

Query: 1031 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 858
            +A  + +   R+ I+ GQAARNKLI+ NL+L+L+ +  Y Q+F+N         F DLC 
Sbjct: 167  EATNMNVEEARKQIEVGQAARNKLIKHNLRLILFVINKYFQDFANGP------RFQDLCQ 220

Query: 857  AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXXXXX 678
            AG++GL+ A+DRF+P R+ R STY+ FWIRH + +++   S   +   +           
Sbjct: 221  AGVKGLITAIDRFEPKRRFRLSTYSLFWIRHAIIRSMTLSSFTRVSFGLESVRLEIQKAK 280

Query: 677  XXXRSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTKVDLENIADENEGPLSWWIDNG 498
                    R+PT+EE+   + + PE++ +V + +     +   +   + E        NG
Sbjct: 281  LELMVKLQREPTEEEIIERVGISPERYHEVKRASKSVLSLHSRHAVTQEE------FING 334

Query: 497  SYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISN 318
               +   D       ++  +DD+L SL P+E  +I++RYG +GK +++L E A  L IS 
Sbjct: 335  ITDVDGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISR 394

Query: 317  EMVRKEENKAFSKLRDPSRIDFLKQ 243
            EMVRK E KA  KL+ P+R+D+L++
Sbjct: 395  EMVRKYEVKALMKLKHPARVDYLRR 419


>XP_010671515.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Beta vulgaris subsp.
            vulgaris]
          Length = 521

 Score =  226 bits (576), Expect = 1e-62
 Identities = 138/385 (35%), Positives = 211/385 (54%), Gaps = 2/385 (0%)
 Frame = -2

Query: 1391 NGSRRQKRLSLDTRRALNLQKIENSKKGSKAQLGRKKRENNENAIDIDFWDKEIDKLIKE 1212
            N +R+ KRLSL  R  L   K+   +K + + L +KK   NE        D++ID+L++ 
Sbjct: 152  NRNRKVKRLSLSKRIELKHSKVCKEEKKAVSLLLKKKVVKNE--------DEKIDELVRH 203

Query: 1211 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1032
            YS      SLDW  +    VL  SEH WL +LM+P K   + ++ L+   GR+P D E+ 
Sbjct: 204  YSASTDLASLDWKKMKIPPVLPSSEHTWLFKLMEPTKALNQVKENLRTEFGRDPTDKELG 263

Query: 1031 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 858
             AL L    VRRH++ G AARNKLI+ NL+LVL+ +  Y Q+F+N         F DLC 
Sbjct: 264  VALNLTAVQVRRHMEVGHAARNKLIKHNLRLVLFVMNKYFQDFTNGP------NFQDLCQ 317

Query: 857  AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXXXXX 678
            AG++GL+  +DRF+P +K + STYA FWIRH + +++   S   +P  +           
Sbjct: 318  AGVKGLITGIDRFEPRKKFQLSTYALFWIRHAIIRSMTVSSFTRVPFGLESVRVEIQRAK 377

Query: 677  XXXRSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTKVDLENIADENEGPLSWWIDNG 498
                    R P +EE+   + + PE++K+V + +   + +   +   + E        +G
Sbjct: 378  LELMFELKRMPREEEIMERIGISPERYKEVMRASNSVSSLHARHQVTQEEFIKGITDVDG 437

Query: 497  SYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISN 318
                K+  P   RL     +DD+L SL P+E  +I++RYG +GK +++L E A  L IS 
Sbjct: 438  VGSNKQRQPALLRLA----IDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISR 493

Query: 317  EMVRKEENKAFSKLRDPSRIDFLKQ 243
            EMVRK E KA  KL+ P+R+D+L++
Sbjct: 494  EMVRKHEMKALMKLKHPTRVDYLQR 518


>XP_006350582.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Solanum tuberosum]
          Length = 516

 Score =  225 bits (574), Expect = 2e-62
 Identities = 142/387 (36%), Positives = 214/387 (55%), Gaps = 4/387 (1%)
 Frame = -2

Query: 1391 NGSRRQKRLSLDTRRALNLQKIENSKKGSKAQLGRKKRENNENAIDIDFWDKEIDKLIKE 1212
            N  +  KRL+LD R AL L+  E     S  +  RK +E+ E        D++IDKL++E
Sbjct: 150  NRRKTSKRLNLDQRIAL-LKNKEGEMVASSER--RKLKEDTE--------DEKIDKLVRE 198

Query: 1211 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1032
            YS      SLDW  +    VL  SEH WL +LMQPMK   + ++ L+  +GREP D EVA
Sbjct: 199  YSGATDLASLDWKKMKIPPVLPSSEHVWLFKLMQPMKAILQVKENLQNDLGREPTDGEVA 258

Query: 1031 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 858
            +A  +    +R+ ++ G+AARNKLI+ NL+LVL+ +  Y Q+F+N         F DLC 
Sbjct: 259  EATNMDASELRKKLEVGRAARNKLIKHNLRLVLFVMNKYFQDFANGS------RFQDLCQ 312

Query: 857  AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXXXXX 678
            AG++GL+ A+DRF+P RK R STY  FWIRH + +++   S   +P  +           
Sbjct: 313  AGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKVPFGLESIRVEIQKAK 372

Query: 677  XXXRSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTKVDLENIADENEGPLSWWIDNG 498
                    R PT EE+   + L PE++ +V K +   + +   N   + E      + NG
Sbjct: 373  LELLFELQRIPTDEEIIRRVGLSPERYHEVMKVSKPVSSLHARNKTTQEE------LING 426

Query: 497  SYPIK--ENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGI 324
               +   + D       ++  +DD+L SL P+E  +I++RYG +GK +++L E A  L I
Sbjct: 427  ITDVDGVDGDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNI 486

Query: 323  SNEMVRKEENKAFSKLRDPSRIDFLKQ 243
            S EMVRK E KA  KL+ P+R+D++++
Sbjct: 487  SREMVRKHEVKALMKLKHPTRVDYVRR 513


>XP_015070568.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial isoform X1 [Solanum
            pennellii]
          Length = 516

 Score =  225 bits (573), Expect = 3e-62
 Identities = 141/387 (36%), Positives = 214/387 (55%), Gaps = 4/387 (1%)
 Frame = -2

Query: 1391 NGSRRQKRLSLDTRRALNLQKIENSKKGSKAQLGRKKRENNENAIDIDFWDKEIDKLIKE 1212
            N  ++ KRL+LD R AL L+  E     S  +  RK +E+ E        D++IDKL++E
Sbjct: 150  NRRKKSKRLNLDQRIAL-LKNKEGKMLASSER--RKLKEDTE--------DEKIDKLVRE 198

Query: 1211 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1032
            YS      SLDW  +    VL  SEH WL +LMQPMK   + ++ L+  +GREP D EVA
Sbjct: 199  YSGATDLASLDWKKMKIPPVLPSSEHTWLFKLMQPMKAILQVKENLQNDLGREPTDGEVA 258

Query: 1031 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 858
            +A  +    +R+ ++AG+AARNKLI+ NL+LVL+ +  Y Q+F+N         F DLC 
Sbjct: 259  EATNIDASELRKKLEAGRAARNKLIKHNLRLVLFVMNKYFQDFANAS------RFQDLCQ 312

Query: 857  AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXXXXX 678
            AG++GL+ A+DRF+P RK R STY  FWIRH + +++   S   +P  +           
Sbjct: 313  AGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKVPFGLESIRVEIQKAK 372

Query: 677  XXXRSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTKVDLENIADENEGPLSWWIDNG 498
                    R PT +E+   +   PE++ +V K +     +   N   + E      + NG
Sbjct: 373  LELLFELQRIPTDDEIIKRVGFSPERYHEVMKVSKPIFSLHARNKTTQEE------LING 426

Query: 497  SYPIK--ENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGI 324
               +   + D       ++  +DD+L SL P+E  +I++RYG +GK +++L E A  L I
Sbjct: 427  ITDVDGVDGDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNI 486

Query: 323  SNEMVRKEENKAFSKLRDPSRIDFLKQ 243
            S EMVRK E KA  KL+ P+R+D++++
Sbjct: 487  SREMVRKHEVKALMKLKHPTRVDYVRR 513


>XP_019415367.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Lupinus angustifolius]
            XP_019415368.1 PREDICTED: RNA polymerase sigma factor
            sigE, chloroplastic/mitochondrial [Lupinus angustifolius]
            OIV97973.1 hypothetical protein TanjilG_14073 [Lupinus
            angustifolius]
          Length = 514

 Score =  224 bits (571), Expect = 5e-62
 Identities = 141/382 (36%), Positives = 210/382 (54%)
 Frame = -2

Query: 1391 NGSRRQKRLSLDTRRALNLQKIENSKKGSKAQLGRKKRENNENAIDIDFWDKEIDKLIKE 1212
            N  R+ KRLSLD R AL  +K E      K ++ + + E             +I++L++E
Sbjct: 150  NQKRKVKRLSLDKRIALKNKKDEEVIPSQKKRIVKSRIE-------------KIEELVRE 196

Query: 1211 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1032
            YS      SLDW  +    VL  SEH WL +LMQPMK     ++ L   +GREP D+E+A
Sbjct: 197  YSGSTDLVSLDWKKMRIPPVLPSSEHTWLFKLMQPMKVLLPVKEGLLKELGREPTDVELA 256

Query: 1031 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEVYRQNFSNKKLGDVTLEFSDLCNAG 852
             A  + L  V++ I+AG+AARNKLI+ NL+LVL+ V  + F +   G    +F DLC AG
Sbjct: 257  DATNMSLVRVKKAIEAGRAARNKLIKHNLRLVLF-VINKYFPDFASGP---KFQDLCQAG 312

Query: 851  LQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXXXXXXX 672
            ++GL+ A+DRF+P RK R STY  FWIRH + +++   S   +P  +             
Sbjct: 313  VKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTLSSFTRVPFGLESVRSEIQKAKLL 372

Query: 671  XRSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTKVDLENIADENEGPLSWWIDNGSY 492
                  R PT+EE++  +Q+ PE++  V K +     ++  +   + E       D+G  
Sbjct: 373  LTFELQRPPTEEEIQKRVQISPERYHDVKKASKSVLSLNSRHSVTQEEFINGITDDDGVN 432

Query: 491  PIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISNEM 312
              K   P   RL     +DD+L SL P+E  +I++R+G +GK +++L E A  L IS EM
Sbjct: 433  SDKRRQPAILRLA----LDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREM 488

Query: 311  VRKEENKAFSKLRDPSRIDFLK 246
            VRK E KA  KL+ P+R+D+L+
Sbjct: 489  VRKHEVKALMKLKHPTRLDYLR 510


>XP_004234179.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial isoform X1 [Solanum
            lycopersicum]
          Length = 516

 Score =  224 bits (571), Expect = 5e-62
 Identities = 141/387 (36%), Positives = 214/387 (55%), Gaps = 4/387 (1%)
 Frame = -2

Query: 1391 NGSRRQKRLSLDTRRALNLQKIENSKKGSKAQLGRKKRENNENAIDIDFWDKEIDKLIKE 1212
            N  ++ KRL+LD R AL    ++N  K  K     ++R+ NE     D  D++IDKL++E
Sbjct: 150  NRRKKSKRLNLDQRIAL----LKN--KEGKMLASSERRKLNE-----DTEDEKIDKLVRE 198

Query: 1211 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1032
            YS      SLDW  +    VL  SEH WL +LMQPMK   + ++ L+  +GREP D EVA
Sbjct: 199  YSGATDLASLDWKKMKIPPVLPSSEHTWLFKLMQPMKAILQVKENLQNDLGREPTDGEVA 258

Query: 1031 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 858
            +A  +    +R+ ++AG+AARNKLI+ NL+LVL+ +  Y Q+F+N         F DLC 
Sbjct: 259  EATNMDASELRKKLEAGRAARNKLIKHNLRLVLFVMNKYFQDFANAS------RFQDLCQ 312

Query: 857  AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXXXXX 678
            AG++GL+ A+DRF+P RK R STY  FWIRH + + +   S   +P  +           
Sbjct: 313  AGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRYMTTSSFTKVPFGLESIRVEIQKAK 372

Query: 677  XXXRSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTKVDLENIADENEGPLSWWIDNG 498
                    R PT +E+   +   PE++ +V K +     +   N   + E      + NG
Sbjct: 373  LELLFELQRIPTDDEIIKRVGFSPERYHEVMKVSKPIFSLHARNKTTQEE------LING 426

Query: 497  SYPIK--ENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGI 324
               +   + D       ++  +DD+L SL P+E  +I++RYG +GK +++L E A  L I
Sbjct: 427  ITDVDGVDGDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNI 486

Query: 323  SNEMVRKEENKAFSKLRDPSRIDFLKQ 243
            S EMVRK E KA  KL+ P+R+D++++
Sbjct: 487  SREMVRKHEVKALMKLKHPTRVDYVRR 513


>AKC88754.1 sigma factor [Pelargonium fulgidum]
          Length = 517

 Score =  224 bits (570), Expect = 8e-62
 Identities = 140/385 (36%), Positives = 206/385 (53%), Gaps = 2/385 (0%)
 Frame = -2

Query: 1391 NGSRRQKRLSLDTRRALNLQKIENSKKGSKAQLGRKKRENNENAIDIDFWDKEIDKLIKE 1212
            N  ++ KRL+LD R AL  +K E     +  Q  R+ ++ NE          +I+KL++E
Sbjct: 153  NRVKKIKRLTLDERIALR-RKEEGKFDATLFQGNREPKDENE----------KINKLLRE 201

Query: 1211 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1032
            Y       SLDW       VL PSEH WL RLMQPMK + + ++ L+  +GREP ++E+A
Sbjct: 202  YGSSTRYSSLDWKRSKIPPVLAPSEHAWLFRLMQPMKAHLKVQEDLQTKLGREPTNLELA 261

Query: 1031 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 858
              L +  + +RR I  G+AARNKLI+ NL+LVL+ +  Y  + SN         F DLC 
Sbjct: 262  DTLNMHPKELRREIAIGRAARNKLIEHNLRLVLFVINKYFHDCSNDN------NFEDLCQ 315

Query: 857  AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXXXXX 678
            AGLQGL+ ++DRFKP +  R STY FFWIR  + ++I   S   +P ++           
Sbjct: 316  AGLQGLIKSIDRFKPQKNFRLSTYGFFWIRSSIIRSITRSSFHQIPYSLETVRAKIHQAK 375

Query: 677  XXXRSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTKVDLENIADENEGPLSWWIDNG 498
                    R PT EE+R  + + PEK+  V         +   N     E      +  G
Sbjct: 376  HDLCYELSRSPTNEEIREKIGISPEKYNMVLLSTNPILSLHARNPVTGEE------LIKG 429

Query: 497  SYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISN 318
                + N+   P   ++  +DD+L SL P+E  +I++RYG +GK  +S+ E A  L IS 
Sbjct: 430  VIDEESNNDRLPLARLRLALDDVLDSLKPKESLVIRQRYGLDGKGCRSMGEIASNLNISR 489

Query: 317  EMVRKEENKAFSKLRDPSRIDFLKQ 243
            EMVRK E KA  KL+ P+R+D++++
Sbjct: 490  EMVRKHEMKAMMKLKHPTRLDYIRE 514


>XP_002268709.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Vitis vinifera] CBI22546.3
            unnamed protein product, partial [Vitis vinifera]
          Length = 518

 Score =  224 bits (570), Expect = 8e-62
 Identities = 140/385 (36%), Positives = 212/385 (55%), Gaps = 4/385 (1%)
 Frame = -2

Query: 1385 SRRQKRLSLDTRRALNLQKIENSKKGSKAQLGRKKRENNENAIDIDFWDKEIDKLIKEYS 1206
            +++ KRLSL+ R AL+  K E +     A + +K+   NE        D+ ID L++EYS
Sbjct: 155  NKKPKRLSLEKRIALSKMKQEKAV----ASIQKKRDSKNE--------DENIDVLVREYS 202

Query: 1205 MPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVAKA 1026
                  SLDW  +    VL PSEH WL +LMQPMK   E +  L+  +GREP D E+A+A
Sbjct: 203  ASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGLLEVKDNLQKDLGREPTDGELAEA 262

Query: 1025 LRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCNAG 852
            + +    VRRH++ GQAARNKLI+ NL+LVL+ +  Y Q F+N        +F DLC AG
Sbjct: 263  MSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKYFQEFANGP------KFQDLCQAG 316

Query: 851  LQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXXXXXXX 672
            ++GL+ A+DRF+P R  R STY  FWIRH + +++   S   +   +             
Sbjct: 317  VKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRVSFGLESVRVEIQRAKLE 376

Query: 671  XRSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTKVDLENIADENEGPLSWWIDNGSY 492
                  R PT+EE+   + + PE++ +V + +     +   +   + E        NG  
Sbjct: 377  LLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEE------YINGIT 430

Query: 491  PIK--ENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISN 318
             ++    D       ++  +DD+L SL P+E  ++++RYG +GK +++L E A  L IS 
Sbjct: 431  DVEGVGGDRGRQLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLGEIAGNLSISR 490

Query: 317  EMVRKEENKAFSKLRDPSRIDFLKQ 243
            EMVRK E KA  KL+ P+R+D+L+Q
Sbjct: 491  EMVRKHEVKALMKLKHPARVDYLRQ 515


>AKC88759.1 sigma factor [Pelargonium transvaalense]
          Length = 515

 Score =  223 bits (569), Expect = 1e-61
 Identities = 143/385 (37%), Positives = 206/385 (53%), Gaps = 2/385 (0%)
 Frame = -2

Query: 1391 NGSRRQKRLSLDTRRALNLQKIENSKKGSKAQLGRKKRENNENAIDIDFWDKEIDKLIKE 1212
            N +++ KRL LD R AL     +  +K     L  K RE  +        +++I KL+ E
Sbjct: 153  NRAKKVKRLGLDERIALR----KKEEKKFDTTLTLKNREPKDE-------NEKIKKLLWE 201

Query: 1211 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1032
            Y  P F  SLDW       VL  SEH WL  LMQPMK + + ++ L+  + REP + E+A
Sbjct: 202  YGAPTFN-SLDWKKAKIPPVLGSSEHTWLFNLMQPMKAHFKVQEDLQKKLDREPTNFELA 260

Query: 1031 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 858
              L + +  +R+ I  GQAARNKLIQ NL+LVL+ +  Y +  SN         F DLC 
Sbjct: 261  YKLNMKVSELRKQIQIGQAARNKLIQHNLRLVLFVMNKYFRECSNHN------NFEDLCQ 314

Query: 857  AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXXXXX 678
            AG+QGL+ ++DRF P +K R STYAFFWIRH + + I + S F +P N+           
Sbjct: 315  AGMQGLITSIDRFDPKKKFRLSTYAFFWIRHGIIRYITNSSFFRIPYNLEMVRAQIQKVK 374

Query: 677  XXXRSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTKVDLENIADENEGPLSWWIDNG 498
                    R PT EE+R  + +  EK+ +V + +     +  +N   + E      + N 
Sbjct: 375  RQLCYKLSRSPTDEEIREEIGISREKYNKVLRASNPIYSLHAKNPITQEE------LINE 428

Query: 497  SYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISN 318
                + +    P   ++  +DD+L SL P+E  +I++RYG +GK  +SL E A  L IS 
Sbjct: 429  IIDEESDTDRVPLARLRLALDDVLDSLKPKESLVIRQRYGLDGKGGRSLGEIAGNLNISR 488

Query: 317  EMVRKEENKAFSKLRDPSRIDFLKQ 243
            EMVRK E KA  KL+ P RID+L++
Sbjct: 489  EMVRKYEMKAMMKLKHPMRIDYLRE 513


>JAU99365.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
            [Noccaea caerulescens]
          Length = 516

 Score =  223 bits (568), Expect = 1e-61
 Identities = 136/385 (35%), Positives = 214/385 (55%), Gaps = 2/385 (0%)
 Frame = -2

Query: 1391 NGSRRQKRLSLDTRRALNLQKIENSKKGSKAQLGRKKRENNENAIDIDFWDKEIDKLIKE 1212
            N  +++KRLSLD R A+     E     + AQ    KR+  E         ++I++L+++
Sbjct: 148  NNGKKEKRLSLDKRIAMKRNIQEKPVISASAQPKVTKRQQEE---------EKIERLVRD 198

Query: 1211 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1032
            YS      +LDW  +    VL  SEH WL +LMQPMK   E + +L+  +GREP + E+A
Sbjct: 199  YSASNDIVTLDWKKMKIPPVLSSSEHAWLFKLMQPMKALLEVKDELQKSLGREPREAEIA 258

Query: 1031 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 858
            K + + +  V+R I+ G+AARNKLI+ NL+LVL+ +  Y Q+F+N        +F DLC 
Sbjct: 259  KEINMDVAEVKRKIEIGRAARNKLIKHNLRLVLFTMNKYFQDFTNGP------KFQDLCQ 312

Query: 857  AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXXXXX 678
            AG++GL+ A+DRF+P RK R STY  FWIRH + +++   +   +P  +           
Sbjct: 313  AGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVEIYKTK 372

Query: 677  XXXRSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTKVDLENIADENEGPLSWWIDNG 498
                   GR PT+EE+   +++ PE++++V +       ++ ++   + E        +G
Sbjct: 373  MELLFELGRLPTEEEVIERLKISPERYREVLRAAKPVFSLNSKHSVTQEEFINGITDVDG 432

Query: 497  SYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISN 318
                    P   RL     +DD+L SL P+E  +I++RYG +GK +++L E A  L IS 
Sbjct: 433  VGADNRRQPALLRLA----LDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISR 488

Query: 317  EMVRKEENKAFSKLRDPSRIDFLKQ 243
            EMVRK E KA  KL+  +R+D+L+Q
Sbjct: 489  EMVRKHEVKALMKLKHQARVDYLRQ 513


>JAU61612.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
            [Noccaea caerulescens]
          Length = 516

 Score =  223 bits (568), Expect = 1e-61
 Identities = 136/385 (35%), Positives = 214/385 (55%), Gaps = 2/385 (0%)
 Frame = -2

Query: 1391 NGSRRQKRLSLDTRRALNLQKIENSKKGSKAQLGRKKRENNENAIDIDFWDKEIDKLIKE 1212
            N  +++KRLSLD R A+     E     + AQ    KR+  E         ++I++L+++
Sbjct: 148  NNGKKEKRLSLDKRIAMKRNIQEKPVISASAQPKVTKRQQEE---------EKIERLVRD 198

Query: 1211 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1032
            YS      +LDW  +    VL  SEH WL +LMQPMK   E + +L+  +GREP + E+A
Sbjct: 199  YSASNDIVTLDWKKMKIPPVLSSSEHAWLFKLMQPMKALLEVKDELQKSLGREPREAEIA 258

Query: 1031 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 858
            K + + +  V+R I+ G+AARNKLI+ NL+LVL+ +  Y Q+F+N        +F DLC 
Sbjct: 259  KEINMDVAEVKRKIEIGRAARNKLIKHNLRLVLFTMNKYFQDFTNGP------KFQDLCQ 312

Query: 857  AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXXXXX 678
            AG++GL+ A+DRF+P RK R STY  FWIRH + +++   +   +P  +           
Sbjct: 313  AGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVEIYKTK 372

Query: 677  XXXRSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTKVDLENIADENEGPLSWWIDNG 498
                   GR PT+EE+   +++ PE++++V +       ++ ++   + E        +G
Sbjct: 373  MELLFELGRLPTEEEVIERLKISPERYREVLRAAKPVFSLNSKHSVTQEEFINGITDVDG 432

Query: 497  SYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISN 318
                    P   RL     +DD+L SL P+E  +I++RYG +GK +++L E A  L IS 
Sbjct: 433  VGADNRRQPALLRLA----LDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISR 488

Query: 317  EMVRKEENKAFSKLRDPSRIDFLKQ 243
            EMVRK E KA  KL+  +R+D+L+Q
Sbjct: 489  EMVRKHEVKALMKLKHQARVDYLRQ 513


>JAU52807.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
            [Noccaea caerulescens]
          Length = 516

 Score =  223 bits (568), Expect = 1e-61
 Identities = 136/385 (35%), Positives = 214/385 (55%), Gaps = 2/385 (0%)
 Frame = -2

Query: 1391 NGSRRQKRLSLDTRRALNLQKIENSKKGSKAQLGRKKRENNENAIDIDFWDKEIDKLIKE 1212
            N  +++KRLSLD R A+     E     + AQ    KR+  E         ++I++L+++
Sbjct: 148  NNGKKEKRLSLDKRIAMKRNIQEKPVISASAQPKVTKRQQEE---------EKIERLVRD 198

Query: 1211 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1032
            YS      +LDW  +    VL  SEH WL +LMQPMK   E + +L+  +GREP + E+A
Sbjct: 199  YSASNDIVTLDWKKMKIPPVLSSSEHAWLFKLMQPMKALLEVKDELQKSLGREPREAEIA 258

Query: 1031 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 858
            K + + +  V+R I+ G+AARNKLI+ NL+LVL+ +  Y Q+F+N        +F DLC 
Sbjct: 259  KEINMDVAEVKRKIEIGRAARNKLIKHNLRLVLFTMNKYFQDFTNGP------KFQDLCQ 312

Query: 857  AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXXXXX 678
            AG++GL+ A+DRF+P RK R STY  FWIRH + +++   +   +P  +           
Sbjct: 313  AGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVEIYKTK 372

Query: 677  XXXRSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTKVDLENIADENEGPLSWWIDNG 498
                   GR PT+EE+   +++ PE++++V +       ++ ++   + E        +G
Sbjct: 373  MELLFELGRLPTEEEVIERLKISPERYREVLRAAKPVFSLNSKHSVTQEEFINGITDVDG 432

Query: 497  SYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISN 318
                    P   RL     +DD+L SL P+E  +I++RYG +GK +++L E A  L IS 
Sbjct: 433  VGADNRRQPALLRLA----LDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISR 488

Query: 317  EMVRKEENKAFSKLRDPSRIDFLKQ 243
            EMVRK E KA  KL+  +R+D+L+Q
Sbjct: 489  EMVRKHEVKALMKLKHQARVDYLRQ 513


>OMO75948.1 RNA polymerase sigma-70 [Corchorus capsularis]
          Length = 516

 Score =  222 bits (566), Expect = 3e-61
 Identities = 135/385 (35%), Positives = 214/385 (55%), Gaps = 2/385 (0%)
 Frame = -2

Query: 1391 NGSRRQKRLSLDTRRALNLQKIENSKKGSKAQLGRKKRENNENAIDIDFWDKEIDKLIKE 1212
            N +++ KRLSLD R AL      N +K     + RKK   NE+        ++ID+L+++
Sbjct: 151  NQTKKNKRLSLDKRIALR----NNREKKHVVSVTRKKSHENES--------EKIDRLVRD 198

Query: 1211 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1032
            YS      SLDW  +    VL  +EH WL +LMQPMK   E +++L+  +GR+P + E+A
Sbjct: 199  YSASTDLVSLDWKKMKIPPVLPSTEHTWLFKLMQPMKALLETKQELQKNLGRDPTEDELA 258

Query: 1031 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 858
            +A  +    VRRH++ G+AAR+KLI+ NL+LVL+ +  Y Q+F+N         F DLC 
Sbjct: 259  EATNMSAAEVRRHLEVGRAARSKLIKHNLRLVLFVINKYFQDFANGP------RFQDLCQ 312

Query: 857  AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXXXXX 678
            AG++GL+ A+DRF+P R+ R STY  FWIRH + +++   S   +   +           
Sbjct: 313  AGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESVRVEIQRAK 372

Query: 677  XXXRSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTKVDLENIADENEGPLSWWIDNG 498
                    R+PT++E+   + + PE++++V + +     +   +   + E        +G
Sbjct: 373  LELLFELHREPTEDEIVKKVGISPERYQEVMRASKSVASLHSRHSVTQEELISGITDVDG 432

Query: 497  SYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISN 318
                    P   RL     +DD+L SL P+E  +I++RYG +GK +++L E A  L IS 
Sbjct: 433  VGGDHRRQPALLRLA----LDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISR 488

Query: 317  EMVRKEENKAFSKLRDPSRIDFLKQ 243
            EMVRK E KA  KL+ P+R+D+L++
Sbjct: 489  EMVRKHEVKALMKLKHPARVDYLRR 513


>XP_007038959.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Theobroma cacao] EOY23460.1
            Sigma factor E isoform 1 [Theobroma cacao] EOY23461.1
            Sigma factor E isoform 1 [Theobroma cacao]
          Length = 516

 Score =  222 bits (566), Expect = 3e-61
 Identities = 136/385 (35%), Positives = 213/385 (55%), Gaps = 2/385 (0%)
 Frame = -2

Query: 1391 NGSRRQKRLSLDTRRALNLQKIENSKKGSKAQLGRKKRENNENAIDIDFWDKEIDKLIKE 1212
            N + R KRLSLD R AL     +N ++     + RKK   NE+        ++ID+L+++
Sbjct: 151  NQTNRIKRLSLDNRIALK----KNREEKPVVSVRRKKSSENES--------EKIDRLVRD 198

Query: 1211 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1032
            YS      SLDW  +    VL   EH WL +LMQPMK   + ++ L+  +GR+P + E+A
Sbjct: 199  YSASTDLVSLDWRKMKIPPVLPSIEHTWLFKLMQPMKALLQAKENLQKDLGRDPTEDELA 258

Query: 1031 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 858
            +A  +    VR+H++ GQAARNKLI+ NL+LVL+ +  Y Q+F+N         F DLC 
Sbjct: 259  EATNMSAAQVRKHLEVGQAARNKLIKHNLRLVLFSINKYFQDFANGP------RFQDLCQ 312

Query: 857  AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXXXXX 678
            AG++GL+ A+DRF+P R+ R STY+ FWIRH + +++   S   +   +           
Sbjct: 313  AGVKGLITAIDRFEPRRRFRLSTYSLFWIRHAIIRSMTLSSFTRVSFGLESVRVEIQRAK 372

Query: 677  XXXRSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTKVDLENIADENEGPLSWWIDNG 498
                    R+PT+EE+   + + PE++++V + +     +   +   + E        +G
Sbjct: 373  LELLFELHREPTEEEIIKKVGISPERYQEVMRASKPVASLHSRHSVTQEEFINGITDIDG 432

Query: 497  SYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISN 318
                    P   RL     +DD+L SL P+E  +I++RYG +GK +++L E A  L IS 
Sbjct: 433  VGGDHRRQPALLRLA----LDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISR 488

Query: 317  EMVRKEENKAFSKLRDPSRIDFLKQ 243
            EMVRK E KA  KL+ P+R+D+L++
Sbjct: 489  EMVRKHEVKALMKLKHPARVDYLRR 513


>XP_006422121.1 hypothetical protein CICLE_v10004760mg [Citrus clementina]
            XP_006422122.1 hypothetical protein CICLE_v10004760mg
            [Citrus clementina] XP_006490565.1 PREDICTED: RNA
            polymerase sigma factor sigE, chloroplastic/mitochondrial
            [Citrus sinensis] XP_006490566.1 PREDICTED: RNA
            polymerase sigma factor sigE, chloroplastic/mitochondrial
            [Citrus sinensis] XP_006490567.1 PREDICTED: RNA
            polymerase sigma factor sigE, chloroplastic/mitochondrial
            [Citrus sinensis] ESR35361.1 hypothetical protein
            CICLE_v10004760mg [Citrus clementina] ESR35362.1
            hypothetical protein CICLE_v10004760mg [Citrus
            clementina] KDO56125.1 hypothetical protein
            CISIN_1g010092mg [Citrus sinensis] KDO56126.1
            hypothetical protein CISIN_1g010092mg [Citrus sinensis]
            KDO56127.1 hypothetical protein CISIN_1g010092mg [Citrus
            sinensis] KDO56128.1 hypothetical protein
            CISIN_1g010092mg [Citrus sinensis]
          Length = 513

 Score =  222 bits (565), Expect = 4e-61
 Identities = 136/387 (35%), Positives = 216/387 (55%), Gaps = 4/387 (1%)
 Frame = -2

Query: 1391 NGSRRQKRLSLDTRRALNLQKIENSKKGSKAQLGRKKRENNENAIDIDFWDKEIDKLIKE 1212
            N  +R KRLSLD R  + L+K E+ K  +K +    K E+           ++I+KL++E
Sbjct: 149  NQVKRPKRLSLDKR--IELRKNEDEKVVTKTRKTDSKDEH-----------EKIEKLVRE 195

Query: 1211 YSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVA 1032
            YS      SLDW  +    VL  +EH WL +LMQPMK + + +++L+  +GREP D+E+A
Sbjct: 196  YSYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPTDVELA 255

Query: 1031 KALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCN 858
            +A  +    V++ ++ G+AARNKLI+ NL+LVL+ +  Y Q+F+N         F DLC 
Sbjct: 256  EATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGP------RFQDLCQ 309

Query: 857  AGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXXXXX 678
            AG++GL+ A+DRF+P R+ R STY  FWIRH + +++   S   +P  +           
Sbjct: 310  AGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLESVRGEIQRAK 369

Query: 677  XXXRSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTKVDLENIADENEGPLSWWIDNG 498
                    R PT EE+   + + PE++++V K +     +   +   + E        NG
Sbjct: 370  LELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEE------FING 423

Query: 497  SYPIK--ENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGI 324
               +   EN+       ++  +DD+L SL P+E  +I++R+G +GK +++L E A  L I
Sbjct: 424  ITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNI 483

Query: 323  SNEMVRKEENKAFSKLRDPSRIDFLKQ 243
            S EMVRK E K   KL+ P+R+D+L+Q
Sbjct: 484  SREMVRKHEVKGLMKLKHPTRVDYLRQ 510


>AKC88747.1 sigma factor [Monsonia marlothii]
          Length = 514

 Score =  221 bits (564), Expect = 5e-61
 Identities = 145/445 (32%), Positives = 239/445 (53%), Gaps = 5/445 (1%)
 Frame = -2

Query: 1562 ASATATKQDLPLTIPQLERKTVVNAEDNADSAPVIGTDMKGEXXXXXXXXXXSMELVNGS 1383
            A+ ++  +DL  T+  +E++  VN +D+    P I T ++                 N  
Sbjct: 110  ATDSSENEDLNGTMRTMEKRRKVNGDDSKSGKPSIDTVVR-----------------NRV 152

Query: 1382 RRQKRLSLDTRRALNLQKIENSKKGSKAQLGRKKRENNENAIDIDFWDKEIDKLIKEYSM 1203
            ++ KRL L+ R  L        K+  +A++     + N N+ D     ++I+KL++EY+ 
Sbjct: 153  KKIKRLDLNKRIEL--------KRNREARVDALLIQGNNNSKDEI---EDINKLLREYTA 201

Query: 1202 PWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVAKAL 1023
            P +  SLDW       VL  SE+ WL +LMQPMK   + ++ L+  +GREP   E+A+A+
Sbjct: 202  PTYFVSLDWKKTKMPPVLSSSENAWLFKLMQPMKALWKVQEDLQKKIGREPKYQELAEAM 261

Query: 1022 RLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGDVTLEFSDLCNAGL 849
             + +  VR+ +D GQAARNKLI  NL+LVL+ +  Y Q+F +       LE  DLC AG+
Sbjct: 262  NMNVTEVRKQLDIGQAARNKLITHNLRLVLFVINKYFQDFGD------GLELEDLCLAGV 315

Query: 848  QGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXXXXXXXX 669
            QGL+ A+DRF+P +  R STYA FWIRH + + +     F +P  +              
Sbjct: 316  QGLITAIDRFEPKKSFRLSTYAVFWIRHAIMRYMTASHFFRVPFGLESLRLEIQKAKQEL 375

Query: 668  RSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTKVDLENIADENEGPLSWWIDNGSYP 489
                 R PT+ E+   + + PE++++  + ++    ++ ++   + E      +  G   
Sbjct: 376  SLQLHRPPTENEIIEKIGISPERYRRAMRASMPVYSLNAKHPTTQEE------LIGG--- 426

Query: 488  IKENDPMDPRLE---VKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISN 318
            I ++D  D R +   ++  +DD+L SL P+E  +I++R+G +GK  +SL E A  L IS 
Sbjct: 427  ISDDDGGDNRRQHALLRLALDDVLDSLKPKESMVIRQRFGLDGKGNRSLGEIAGNLNISR 486

Query: 317  EMVRKEENKAFSKLRDPSRIDFLKQ 243
            EMVRK E KA  KL+ P+R+D+L++
Sbjct: 487  EMVRKHEMKAMMKLKHPTRMDYLRR 511