BLASTX nr result
ID: Ephedra29_contig00010801
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra29_contig00010801
(1154 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJA90766.1 DNA-directed RNA polymerase IV fifth largest subunit ... 396 e-136
AJA90777.1 DNA-directed RNA polymerase IV fifth largest subunit ... 229 1e-70
AJA90761.1 DNA-directed RNA polymerase IV fifth largest subunit ... 218 3e-66
AJA90785.1 DNA-directed RNA polymerase IV fifth largest subunit ... 216 2e-65
XP_008443287.1 PREDICTED: DNA-directed RNA polymerase V subunit ... 176 9e-50
JAT64312.1 DNA-directed RNA polymerases I, II, and III subunit R... 173 1e-48
XP_003632734.1 PREDICTED: DNA-directed RNA polymerase V subunit ... 172 3e-48
KYP46343.1 DNA-directed RNA polymerases I, II, and III subunit R... 169 4e-47
XP_004136650.1 PREDICTED: DNA-directed RNA polymerase V subunit ... 169 4e-47
XP_009609962.1 PREDICTED: DNA-directed RNA polymerase V subunit ... 169 5e-47
CBI30093.3 unnamed protein product, partial [Vitis vinifera] 172 5e-47
XP_010036349.1 PREDICTED: DNA-directed RNA polymerase V subunit ... 169 6e-47
XP_006830353.1 PREDICTED: DNA-directed RNA polymerases IV and V ... 168 6e-47
GAV86998.1 RNA_pol_Rpb5_C domain-containing protein/RNA_pol_Rpb5... 168 1e-46
XP_009418150.1 PREDICTED: DNA-directed RNA polymerase V subunit ... 167 2e-46
XP_002323257.2 hypothetical protein POPTR_0016s03800g [Populus t... 167 3e-46
XP_011000455.1 PREDICTED: DNA-directed RNA polymerase V subunit ... 167 5e-46
XP_002876396.1 eukaryotic rpb5 RNA polymerase subunit family pro... 166 8e-46
XP_006442079.1 hypothetical protein CICLE_v10021999mg [Citrus cl... 166 9e-46
XP_016571810.1 PREDICTED: DNA-directed RNA polymerase V subunit ... 166 1e-45
>AJA90766.1 DNA-directed RNA polymerase IV fifth largest subunit [Ephedra
trifurca]
Length = 217
Score = 396 bits (1018), Expect = e-136
Identities = 202/217 (93%), Positives = 202/217 (93%)
Frame = -1
Query: 989 MGSCLEMFMDKGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRPPRE 810
MGSCLEMFMDKGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRP RE
Sbjct: 1 MGSCLEMFMDKGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRPARE 60
Query: 809 NLRIITQKRSDPSYKISVAFSQKTGKEKLGISDLRYFLSSALPEGIRHAILIVPEKVTSQ 630
NLRIITQKRSDPSYKISVAFSQKTGKEKLGISDLRYFLSSALPEGIRHAILIVPEKVTSQ
Sbjct: 61 NLRIITQKRSDPSYKISVAFSQKTGKEKLGISDLRYFLSSALPEGIRHAILIVPEKVTSQ 120
Query: 629 AKKAVKEISGDFLVEMFEETDLLLNITQHALIPEHXXXXXXXXXXXXXKYSVMEHQLPRM 450
AKKAVKEISGDFLVEMFEETDLLLNITQHALIPEH KYSVMEHQLPRM
Sbjct: 121 AKKAVKEISGDFLVEMFEETDLLLNITQHALIPEHEILSEEEKKTLLKKYSVMEHQLPRM 180
Query: 449 LESDPLAKYYGLRRGKVIKLVYSGDVTGDQTTYRCIW 339
LESDPLAKYYGLRRGKVIKLVYSGDVTGDQTTYR IW
Sbjct: 181 LESDPLAKYYGLRRGKVIKLVYSGDVTGDQTTYRYIW 217
>AJA90777.1 DNA-directed RNA polymerase IV fifth largest subunit [Ginkgo
biloba]
Length = 214
Score = 229 bits (584), Expect = 1e-70
Identities = 110/217 (50%), Positives = 152/217 (70%)
Frame = -1
Query: 989 MGSCLEMFMDKGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRPPRE 810
M SC++ F+DKG SHRLF+VRRT+ QML+DRG+ V+D+DLN L+QFR FG P RE
Sbjct: 1 MESCIDRFIDKGSVNSHRLFRVRRTVFQMLEDRGYTVTDSDLNTTLEQFRVNFGQEPNRE 60
Query: 809 NLRIITQKRSDPSYKISVAFSQKTGKEKLGISDLRYFLSSALPEGIRHAILIVPEKVTSQ 630
+L I T+ R+DP KI V FS G +++G+ +L+ + + E + AI++V K+T
Sbjct: 61 HLFISTRSRADPRDKIFVFFS---GDDRVGVKELKAYATRMKEENVYRAIIVVQNKITPS 117
Query: 629 AKKAVKEISGDFLVEMFEETDLLLNITQHALIPEHXXXXXXXXXXXXXKYSVMEHQLPRM 450
AK+ +KE++ FL+E F+ET+LL+N+ +HAL+PEH +YSV E+QLPRM
Sbjct: 118 AKQGIKELATKFLLETFDETELLINVKEHALVPEHQILTPEEKNALLKQYSVQENQLPRM 177
Query: 449 LESDPLAKYYGLRRGKVIKLVYSGDVTGDQTTYRCIW 339
LESDPLA+YYGLRRGKV+KL Y + TG TYRC+W
Sbjct: 178 LESDPLARYYGLRRGKVVKLTYHSETTGHYVTYRCVW 214
>AJA90761.1 DNA-directed RNA polymerase IV fifth largest subunit [Cycas
revoluta]
Length = 213
Score = 218 bits (555), Expect = 3e-66
Identities = 111/217 (51%), Positives = 148/217 (68%)
Frame = -1
Query: 989 MGSCLEMFMDKGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRPPRE 810
M SC+ F+DKG SH+L++VRRT+ QMLDDRG+ VSD+DL M L QFR +G P R
Sbjct: 1 MESCISRFIDKGSVNSHKLYRVRRTVFQMLDDRGYAVSDSDLTMTLAQFRVAYGEEPNRH 60
Query: 809 NLRIITQKRSDPSYKISVAFSQKTGKEKLGISDLRYFLSSALPEGIRHAILIVPEKVTSQ 630
+L I T RSD + +I V F+ G+ K+G+ DLR + E + AIL+V + +T
Sbjct: 61 DLFISTTSRSDCNDRIFVFFA---GEAKVGVKDLRTYAMRMKDENVYRAILVV-QHITPA 116
Query: 629 AKKAVKEISGDFLVEMFEETDLLLNITQHALIPEHXXXXXXXXXXXXXKYSVMEHQLPRM 450
AK+ +KEI+ FL+E F+ET+LL+NI +HAL+PEH +YSV E+QLPRM
Sbjct: 117 AKQGIKEIATKFLLETFQETELLVNIKEHALVPEHQILIPQEKDELLKQYSVKENQLPRM 176
Query: 449 LESDPLAKYYGLRRGKVIKLVYSGDVTGDQTTYRCIW 339
L SDP+A+YYGLRRG+V+KL YS DVTG TYRC+W
Sbjct: 177 LASDPIARYYGLRRGQVVKLTYSSDVTGHYVTYRCVW 213
>AJA90785.1 DNA-directed RNA polymerase IV fifth largest subunit [Pinus
canariensis]
Length = 215
Score = 216 bits (550), Expect = 2e-65
Identities = 106/218 (48%), Positives = 148/218 (67%), Gaps = 1/218 (0%)
Frame = -1
Query: 989 MGSC-LEMFMDKGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRPPR 813
M +C ++ F+DKG SHRL+++RRT+ QMLDDRG+ +SD DLN L QFR +G P R
Sbjct: 1 MENCSIDRFIDKGSTVSHRLYRIRRTVFQMLDDRGYEISDMDLNTTLPQFRVSYGEEPDR 60
Query: 812 ENLRIITQKRSDPSYKISVAFSQKTGKEKLGISDLRYFLSSALPEGIRHAILIVPEKVTS 633
+ L T+ R++ KI V FS EK GI++L+ ++ + + AI++V ++T
Sbjct: 61 DQLNFSTKSRTNSKDKIFVFFSVG---EKFGINELKGYVHRMSIQDVHRAIIVVQNRITP 117
Query: 632 QAKKAVKEISGDFLVEMFEETDLLLNITQHALIPEHXXXXXXXXXXXXXKYSVMEHQLPR 453
QAKK VKEI+ FL+E+FEETDLL+N+ +HAL+PEH +Y V E+QLPR
Sbjct: 118 QAKKGVKEIAKSFLIEIFEETDLLMNVKEHALVPEHQILTLAEKNALLQQYGVKENQLPR 177
Query: 452 MLESDPLAKYYGLRRGKVIKLVYSGDVTGDQTTYRCIW 339
MLE+DP+A+YYGLRRGKV+KL+Y D+TG TYR +W
Sbjct: 178 MLETDPIARYYGLRRGKVVKLIYDSDLTGHYVTYRVVW 215
>XP_008443287.1 PREDICTED: DNA-directed RNA polymerase V subunit 5A [Cucumis melo]
Length = 227
Score = 176 bits (446), Expect = 9e-50
Identities = 92/220 (41%), Positives = 134/220 (60%), Gaps = 1/220 (0%)
Frame = -1
Query: 995 VRMGSCLEMFMDKGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRPP 816
V G+CL ++D G ESHR F RRT+++ML DRG+ ++ D+++ L QFR IFG P
Sbjct: 13 VEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPD 72
Query: 815 RENLRIITQKRSDPSYKISVAFSQKTGKEKLGISDLRYFLSS-ALPEGIRHAILIVPEKV 639
+ L++ SDPS ++ V F G + ++ +R A + + ILIV ++
Sbjct: 73 VDRLKLYAAHHSDPSKRVLVVFC---GTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQI 129
Query: 638 TSQAKKAVKEISGDFLVEMFEETDLLLNITQHALIPEHXXXXXXXXXXXXXKYSVMEHQL 459
T+QA KAV+ S F VE+F+ TDLL+NIT+HAL P H +YS+ E QL
Sbjct: 130 TNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQL 187
Query: 458 PRMLESDPLAKYYGLRRGKVIKLVYSGDVTGDQTTYRCIW 339
PRML +D +A+YYGL +G+V+K+ Y GD+T TYRC+W
Sbjct: 188 PRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCVW 227
>JAT64312.1 DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Anthurium amnicola]
Length = 217
Score = 173 bits (438), Expect = 1e-48
Identities = 99/219 (45%), Positives = 135/219 (61%), Gaps = 4/219 (1%)
Frame = -1
Query: 986 GSCLEMFMDKGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRPPREN 807
G CL F+D+G ESHR F RRTLL+ML DRG+ V D D++ L +FR ++G +P +
Sbjct: 5 GGCLASFIDQGSVESHRYFLARRTLLEMLRDRGYAVPDVDIHQTLPEFRSMYGQQPDLDR 64
Query: 806 LRIITQKRSDPSYKISVAFSQKTGKEKL----GISDLRYFLSSALPEGIRHAILIVPEKV 639
L I SDPS K+ V FS GK KL GI D F + P+ IL++ +K
Sbjct: 65 LLISASLASDPSRKVLVIFSGP-GKFKLSTFRGIIDK--FKNEISPQS--RMILVLGDKP 119
Query: 638 TSQAKKAVKEISGDFLVEMFEETDLLLNITQHALIPEHXXXXXXXXXXXXXKYSVMEHQL 459
TSQA++A KE S F VE F+ T+LL+N+T+H L+P+H KYSV + QL
Sbjct: 120 TSQARQATKEFS--FKVETFQITELLVNVTKHTLMPKHEILIEEDKQKLLKKYSVEDSQL 177
Query: 458 PRMLESDPLAKYYGLRRGKVIKLVYSGDVTGDQTTYRCI 342
PRML SDP+A+Y+GL G+V+K+ + G+ TG TYRC+
Sbjct: 178 PRMLASDPIARYHGLEPGQVVKVTHDGEATGFHVTYRCV 216
>XP_003632734.1 PREDICTED: DNA-directed RNA polymerase V subunit 5A isoform X1
[Vitis vinifera]
Length = 229
Score = 172 bits (436), Expect = 3e-48
Identities = 91/215 (42%), Positives = 132/215 (61%), Gaps = 1/215 (0%)
Frame = -1
Query: 980 CLEMFMDKGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRPPRENLR 801
CL F+D+G ESHR + RRTLL+ML DRG+ + D+++ L FR + +P + LR
Sbjct: 20 CLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPDRLR 79
Query: 800 IITQKRSDPSYKISVAFSQKTGKEKLGISDLRYFLSSAL-PEGIRHAILIVPEKVTSQAK 624
I RSDPS KI V F G + + ++ +R + + + + IL++ +TSQA
Sbjct: 80 ISAALRSDPSKKILVIFC---GPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQAL 136
Query: 623 KAVKEISGDFLVEMFEETDLLLNITQHALIPEHXXXXXXXXXXXXXKYSVMEHQLPRMLE 444
KAV S F VE F+ TDLL+NIT+H L P+H KYS+ E QLPRML+
Sbjct: 137 KAVDLFS--FQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRMLQ 194
Query: 443 SDPLAKYYGLRRGKVIKLVYSGDVTGDQTTYRCIW 339
D +A+YYGL +G+V+K++Y+G++TG TYRC+W
Sbjct: 195 QDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCVW 229
>KYP46343.1 DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Cajanus
cajan]
Length = 226
Score = 169 bits (428), Expect = 4e-47
Identities = 92/215 (42%), Positives = 131/215 (60%), Gaps = 1/215 (0%)
Frame = -1
Query: 980 CLEMFMDKGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRPPRENLR 801
CL F+D G ESHR + R+T L+ML DRG+ VS D+++ L +FR I+G P + LR
Sbjct: 17 CLSKFIDDGTVESHRYYLSRKTTLEMLRDRGYSVSPQDIDLSLSEFRNIYGPSPDTDRLR 76
Query: 800 IITQKRSDPSYKISVAFSQKTGKEKLGISDLRYFLSSALP-EGIRHAILIVPEKVTSQAK 624
+ S+PS ++ V F G + +SD+R + E + ILIV +TSQA
Sbjct: 77 LSLPHASNPSKRVLVIFC---GTGVVKVSDVRNISGQIVNRETLTGLILIVQNNITSQAL 133
Query: 623 KAVKEISGDFLVEMFEETDLLLNITQHALIPEHXXXXXXXXXXXXXKYSVMEHQLPRMLE 444
KAV S F VE+F+ TDLL+NIT+H L P+H KY++ E QLPRML+
Sbjct: 134 KAVNSFS--FKVEIFQITDLLVNITKHVLKPKHQVLTDRQKKNLLKKYNIEEKQLPRMLQ 191
Query: 443 SDPLAKYYGLRRGKVIKLVYSGDVTGDQTTYRCIW 339
+D +A+YYGL +G+V+K+ YSG++T TYRC+W
Sbjct: 192 TDAIARYYGLEKGQVVKVTYSGEITQMHVTYRCVW 226
>XP_004136650.1 PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Cucumis
sativus] KGN59468.1 hypothetical protein Csa_3G822200
[Cucumis sativus]
Length = 227
Score = 169 bits (428), Expect = 4e-47
Identities = 90/220 (40%), Positives = 132/220 (60%), Gaps = 1/220 (0%)
Frame = -1
Query: 995 VRMGSCLEMFMDKGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRPP 816
V G+CL ++D G ESHR F RRT+++ML DRG+ ++ +++ L QFR FG P
Sbjct: 13 VEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQFRETFGQFPD 72
Query: 815 RENLRIITQKRSDPSYKISVAFSQKTGKEKLGISDLRYFLSS-ALPEGIRHAILIVPEKV 639
+ L++ SDPS ++ V F G + ++ +R A + + ILIV ++
Sbjct: 73 VDRLKLSAAHHSDPSKRVLVVFC---GTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQI 129
Query: 638 TSQAKKAVKEISGDFLVEMFEETDLLLNITQHALIPEHXXXXXXXXXXXXXKYSVMEHQL 459
T+QA KAV+ S F VE+F+ TDLL+NIT+HAL P H +YS+ E QL
Sbjct: 130 TNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQL 187
Query: 458 PRMLESDPLAKYYGLRRGKVIKLVYSGDVTGDQTTYRCIW 339
PRML +D +A+YYGL +G+V+K+ Y GD+T TYRC+W
Sbjct: 188 PRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 227
>XP_009609962.1 PREDICTED: DNA-directed RNA polymerase V subunit 5A isoform X1
[Nicotiana tomentosiformis] XP_016450391.1 PREDICTED:
DNA-directed RNA polymerase V subunit 5A isoform X1
[Nicotiana tabacum]
Length = 228
Score = 169 bits (428), Expect = 5e-47
Identities = 91/218 (41%), Positives = 134/218 (61%), Gaps = 1/218 (0%)
Frame = -1
Query: 989 MGSCLEMFMDKGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRPPRE 810
+G CL F+D G ESHR F RRT+L+ML DRGF + ++++ L+ FR FG RP +
Sbjct: 16 LGPCLTSFVDDGTVESHRYFLARRTVLEMLKDRGFAIPNSEIESTLEDFREKFGQRPDID 75
Query: 809 NLRIITQKRSDPSYKISVAFSQKTGKEKLGISDLRYFLSSAL-PEGIRHAILIVPEKVTS 633
LRI + R+D S K+ V F G + ++ +R L+ + E + ILI+ + +TS
Sbjct: 76 RLRISSMHRNDLSNKVLVIFC---GPNAVKVNVIRSILTQIMNKESLSRLILIIQKPMTS 132
Query: 632 QAKKAVKEISGDFLVEMFEETDLLLNITQHALIPEHXXXXXXXXXXXXXKYSVMEHQLPR 453
QA KAV+ +S F VE+F+ TDLL+NIT+H L P+H KY++ E QLPR
Sbjct: 133 QAMKAVELLS--FKVEIFQITDLLVNITKHVLKPKHELLNNEEKEKLLKKYNLEEKQLPR 190
Query: 452 MLESDPLAKYYGLRRGKVIKLVYSGDVTGDQTTYRCIW 339
M + D +A+YYGL +G+V+K+ YS ++ TYRC+W
Sbjct: 191 MSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 228
>CBI30093.3 unnamed protein product, partial [Vitis vinifera]
Length = 330
Score = 172 bits (436), Expect = 5e-47
Identities = 91/215 (42%), Positives = 132/215 (61%), Gaps = 1/215 (0%)
Frame = -1
Query: 980 CLEMFMDKGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRPPRENLR 801
CL F+D+G ESHR + RRTLL+ML DRG+ + D+++ L FR + +P + LR
Sbjct: 121 CLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPDRLR 180
Query: 800 IITQKRSDPSYKISVAFSQKTGKEKLGISDLRYFLSSAL-PEGIRHAILIVPEKVTSQAK 624
I RSDPS KI V F G + + ++ +R + + + + IL++ +TSQA
Sbjct: 181 ISAALRSDPSKKILVIFC---GPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQAL 237
Query: 623 KAVKEISGDFLVEMFEETDLLLNITQHALIPEHXXXXXXXXXXXXXKYSVMEHQLPRMLE 444
KAV S F VE F+ TDLL+NIT+H L P+H KYS+ E QLPRML+
Sbjct: 238 KAVDLFS--FQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRMLQ 295
Query: 443 SDPLAKYYGLRRGKVIKLVYSGDVTGDQTTYRCIW 339
D +A+YYGL +G+V+K++Y+G++TG TYRC+W
Sbjct: 296 QDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCVW 330
>XP_010036349.1 PREDICTED: DNA-directed RNA polymerase V subunit 5A [Eucalyptus
grandis] KCW47892.1 hypothetical protein EUGRSUZ_K01636
[Eucalyptus grandis]
Length = 238
Score = 169 bits (428), Expect = 6e-47
Identities = 89/215 (41%), Positives = 134/215 (62%), Gaps = 1/215 (0%)
Frame = -1
Query: 980 CLEMFMDKGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRPPRENLR 801
C+ ++D+G +SHR + RRTLL+ML DRG+ + +D+++ L +FR G P + LR
Sbjct: 29 CMSSYVDEGSVQSHRYYLARRTLLEMLRDRGYAIPSSDIDVSLAEFRATHGQSPDIDRLR 88
Query: 800 IITQKRSDPSYKISVAFSQKTGKEKLGISDLRYFLSS-ALPEGIRHAILIVPEKVTSQAK 624
I RSDPS ++ V F G K ++ +RY A +G+ IL++ ++T+QA
Sbjct: 89 ISNSLRSDPSKRVLVYFCNP-GPVK--VTSIRYISGQIANKDGLSGLILVLQGEMTNQAL 145
Query: 623 KAVKEISGDFLVEMFEETDLLLNITQHALIPEHXXXXXXXXXXXXXKYSVMEHQLPRMLE 444
KA+ F V++F+ TDLL+NIT+H L P+H KYS+ E QLPRML+
Sbjct: 146 KALDLFP--FKVQVFQITDLLVNITKHVLKPKHRVLTDQEKQRLLKKYSIQEKQLPRMLK 203
Query: 443 SDPLAKYYGLRRGKVIKLVYSGDVTGDQTTYRCIW 339
+D +A+YYGL +G+V+K+ YSGD+TG TYRC+W
Sbjct: 204 NDAIARYYGLEKGQVVKVTYSGDITGTHVTYRCVW 238
>XP_006830353.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 5B
[Amborella trichopoda] ERM97769.1 hypothetical protein
AMTR_s00116p00085310 [Amborella trichopoda]
Length = 216
Score = 168 bits (426), Expect = 6e-47
Identities = 84/214 (39%), Positives = 130/214 (60%)
Frame = -1
Query: 983 SCLEMFMDKGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRPPRENL 804
+CL +D+G ESHRLF+ R+T+ +ML DRG+ VSD DL+M L FR ++G P L
Sbjct: 5 NCLCKLLDRGSVESHRLFRARKTVFEMLRDRGYSVSDNDLSMTLPHFRELYGEEPDTSQL 64
Query: 803 RIITQKRSDPSYKISVAFSQKTGKEKLGISDLRYFLSSALPEGIRHAILIVPEKVTSQAK 624
I T DPS +I V F + ++ +R ++ L E + AI++ +T QA+
Sbjct: 65 TITTAMDRDPSQRIMVLFCAVDAAK---LAHMREYIKQILNEKVHDAIIVYRNSMTPQAR 121
Query: 623 KAVKEISGDFLVEMFEETDLLLNITQHALIPEHXXXXXXXXXXXXXKYSVMEHQLPRMLE 444
A+KE+ + VE+F+ +DLL+NIT+H L P+H KYSV ++QLPRML+
Sbjct: 122 IAIKEMPSPYSVELFQMSDLLVNITEHVLKPKHDILTPEEKDELLKKYSVTDNQLPRMLQ 181
Query: 443 SDPLAKYYGLRRGKVIKLVYSGDVTGDQTTYRCI 342
+D +++YYGL+ G+++K+ YS + TYRC+
Sbjct: 182 TDAISRYYGLKPGQIVKITYSDEPIESFMTYRCV 215
>GAV86998.1 RNA_pol_Rpb5_C domain-containing protein/RNA_pol_Rpb5_N
domain-containing protein [Cephalotus follicularis]
Length = 241
Score = 168 bits (426), Expect = 1e-46
Identities = 87/218 (39%), Positives = 135/218 (61%), Gaps = 1/218 (0%)
Frame = -1
Query: 989 MGSCLEMFMDKGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRPPRE 810
+G CL +MD+G ESHR + RRT+L+ML DRGF V +++N+ L+ FR I G+ P +
Sbjct: 29 LGQCLASYMDQGSTESHRYYLARRTVLEMLKDRGFMVPPSEINLSLEDFRAIHGSSPDTD 88
Query: 809 NLRIITQKRSDPSYKISVAFSQKTGKEKLGISDLRYFLSSALP-EGIRHAILIVPEKVTS 633
L+ DPS ++ V FS T + ++ +R + + + + IL++ +TS
Sbjct: 89 RLKFSATHMEDPSKRMLVIFSAPT---MVKVNTIRGIAAQIVNRDTLSGLILVLQNHITS 145
Query: 632 QAKKAVKEISGDFLVEMFEETDLLLNITQHALIPEHXXXXXXXXXXXXXKYSVMEHQLPR 453
QA KAV+ +S F VE+F+ TDLL+NIT+H L P+H KYS+ E+QLPR
Sbjct: 146 QAMKAVELLS--FNVEIFQITDLLVNITKHVLKPKHRVLTDQEKHELLKKYSIEENQLPR 203
Query: 452 MLESDPLAKYYGLRRGKVIKLVYSGDVTGDQTTYRCIW 339
+L+ D +A+YY L++G+V+K+ YS ++T TYRC+W
Sbjct: 204 LLKKDAIARYYALKKGQVVKVTYSDEITESHVTYRCVW 241
>XP_009418150.1 PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Musa
acuminata subsp. malaccensis]
Length = 221
Score = 167 bits (423), Expect = 2e-46
Identities = 95/216 (43%), Positives = 131/216 (60%)
Frame = -1
Query: 989 MGSCLEMFMDKGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRPPRE 810
M CL F+D G ESHR F RRTLL+ML DRGF + D DL + L FR FG+ P E
Sbjct: 9 MPECLISFVDSGTVESHRYFLARRTLLEMLRDRGFPIPDDDLAISLPAFRARFGDNPKLE 68
Query: 809 NLRIITQKRSDPSYKISVAFSQKTGKEKLGISDLRYFLSSALPEGIRHAILIVPEKVTSQ 630
+LRI T S+P K+ V F G E +S +R S E + IL++ K+TS+
Sbjct: 69 DLRISTTIPSNPRKKLLVIFC---GIEPFKLSTVREIYSWVSKEHLTGLILVLQSKMTSK 125
Query: 629 AKKAVKEISGDFLVEMFEETDLLLNITQHALIPEHXXXXXXXXXXXXXKYSVMEHQLPRM 450
A++ +EI F +E+F+ T+LL+NIT+H L P H KY+V + QLPRM
Sbjct: 126 ARELTEEIF-KFRLEIFQITELLVNITKHVLKPRHVLLAAEEKEKLIAKYNVEDIQLPRM 184
Query: 449 LESDPLAKYYGLRRGKVIKLVYSGDVTGDQTTYRCI 342
L+SD +A+YYG +G+V+K+ Y+G++TG TYRCI
Sbjct: 185 LKSDAVARYYGFEKGQVVKVTYNGELTGHHETYRCI 220
>XP_002323257.2 hypothetical protein POPTR_0016s03800g [Populus trichocarpa]
EEF05018.2 hypothetical protein POPTR_0016s03800g
[Populus trichocarpa]
Length = 243
Score = 167 bits (424), Expect = 3e-46
Identities = 87/217 (40%), Positives = 132/217 (60%)
Frame = -1
Query: 989 MGSCLEMFMDKGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRPPRE 810
+G CL F+D+G ESHR + RRT+L+ML DRG+ V +++++ L FRG++G P E
Sbjct: 31 LGRCLSSFVDEGSTESHRYYLSRRTVLEMLKDRGYSVPSSEIDISLQDFRGVYGQNPDIE 90
Query: 809 NLRIITQKRSDPSYKISVAFSQKTGKEKLGISDLRYFLSSALPEGIRHAILIVPEKVTSQ 630
L+ +SDPS ++ V F G K+G+ L + + + IL++ +T+Q
Sbjct: 91 LLKFSATHKSDPSKRMLVIFCG-LGVVKVGMIRL-ITVQITDRDSLTGLILVLQNNITNQ 148
Query: 629 AKKAVKEISGDFLVEMFEETDLLLNITQHALIPEHXXXXXXXXXXXXXKYSVMEHQLPRM 450
A KA+ F +E+F+ TDLL+NIT+H L P+H KYS+ E QLPR+
Sbjct: 149 AMKALDLFK--FKIEIFQITDLLVNITKHILKPKHQVLSEQAKQRLLKKYSIEEKQLPRL 206
Query: 449 LESDPLAKYYGLRRGKVIKLVYSGDVTGDQTTYRCIW 339
L+ D +++YYGL RG+V+K+ Y GD+TG TYRC+W
Sbjct: 207 LKKDAISRYYGLERGQVVKVTYDGDITGSHVTYRCVW 243
>XP_011000455.1 PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Populus
euphratica]
Length = 242
Score = 167 bits (422), Expect = 5e-46
Identities = 86/218 (39%), Positives = 132/218 (60%), Gaps = 1/218 (0%)
Frame = -1
Query: 989 MGSCLEMFMDKGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRPPRE 810
+G CL F+D+G ESHR + RRT+L+ML DRG+ V +++++ L FRG++G P E
Sbjct: 30 LGRCLSGFVDEGSTESHRYYLSRRTVLEMLKDRGYSVPSSEIDISLQDFRGVYGQNPDIE 89
Query: 809 NLRIITQKRSDPSYKISVAFSQKTGKEKLGISDLRYFLSSALP-EGIRHAILIVPEKVTS 633
L+ +SDPS ++ V F G + +S +R + + IL++ +T+
Sbjct: 90 LLKFSATHKSDPSKRMLVIFC---GLGVVKVSMIRLITVQITDRDSLTGLILVLQNNITN 146
Query: 632 QAKKAVKEISGDFLVEMFEETDLLLNITQHALIPEHXXXXXXXXXXXXXKYSVMEHQLPR 453
QA KA+ F +E+F+ TDLL+NIT+H L P+H KYS+ E QLPR
Sbjct: 147 QAMKALDLFK--FKIEIFQITDLLVNITKHILKPKHQVLSEQAKQRLLKKYSIEEKQLPR 204
Query: 452 MLESDPLAKYYGLRRGKVIKLVYSGDVTGDQTTYRCIW 339
+L++D +++YYGL RG+V+K+ Y GD+TG TYRC+W
Sbjct: 205 LLKNDAISRYYGLERGQVVKVTYDGDITGSHVTYRCVW 242
>XP_002876396.1 eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata] EFH52655.1 eukaryotic rpb5 RNA
polymerase subunit family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 222
Score = 166 bits (419), Expect = 8e-46
Identities = 88/215 (40%), Positives = 128/215 (59%), Gaps = 1/215 (0%)
Frame = -1
Query: 980 CLEMFMDKGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRPPRENLR 801
CL ++D ESHR + R+ LQML DRG+ VSD D+N+ L FR ++G RP + LR
Sbjct: 13 CLSKYVDPSSEESHRYYLARQNALQMLRDRGYQVSDEDINLSLHDFRAVYGERPDVDRLR 72
Query: 800 IITQKRSDPSYKISVAFSQKTGKEKLGISDLRYFLSSALP-EGIRHAILIVPEKVTSQAK 624
I Q RSD S K+ V F G + ++ +R + L E + IL++ +VT QA
Sbjct: 73 ISAQHRSDSSKKVKVVFF---GTGMVKVNAIRSIAADVLSQETVTGLILVLQSQVTKQAM 129
Query: 623 KAVKEISGDFLVEMFEETDLLLNITQHALIPEHXXXXXXXXXXXXXKYSVMEHQLPRMLE 444
KA++ S F VE+F+ TDLL+NIT+HAL P+H K+S+ E QLPR+ +
Sbjct: 130 KAIELFS--FKVEIFQITDLLVNITKHALKPQHRVLNDKEKTTLLKKFSIEEKQLPRISK 187
Query: 443 SDPLAKYYGLRRGKVIKLVYSGDVTGDQTTYRCIW 339
D + +YYGL +G+V+K+ Y G++T YRC+W
Sbjct: 188 KDAIVRYYGLEKGQVVKVNYRGELTESHVAYRCVW 222
>XP_006442079.1 hypothetical protein CICLE_v10021999mg [Citrus clementina]
XP_006492520.1 PREDICTED: DNA-directed RNA polymerase V
subunit 5A isoform X1 [Citrus sinensis] ESR55319.1
hypothetical protein CICLE_v10021999mg [Citrus
clementina] KDO43677.1 hypothetical protein
CISIN_1g026620mg [Citrus sinensis]
Length = 236
Score = 166 bits (420), Expect = 9e-46
Identities = 92/216 (42%), Positives = 133/216 (61%), Gaps = 1/216 (0%)
Frame = -1
Query: 983 SCLEMFMDKGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRPPRENL 804
SCL F+D G +S R + RRT+L+ML DRG+ V+ +++N+ + FR I+G P + L
Sbjct: 26 SCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL 85
Query: 803 RIITQKRSDPSYKISVAFSQKTGKEKLGISDLRYFLSSALP-EGIRHAILIVPEKVTSQA 627
RI +SDPS +I V F G + ++ +R +S + + + ILI+ ++TSQA
Sbjct: 86 RISISHQSDPSKRILVVFC---GPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQA 142
Query: 626 KKAVKEISGDFLVEMFEETDLLLNITQHALIPEHXXXXXXXXXXXXXKYSVMEHQLPRML 447
KAV F VEMF+ TDLL+NIT+H L P+H KYS+ E QLPRML
Sbjct: 143 TKAVGLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRML 200
Query: 446 ESDPLAKYYGLRRGKVIKLVYSGDVTGDQTTYRCIW 339
+ D +A+YYGL RG+V+K+ YSG++T TYRC+W
Sbjct: 201 KKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
>XP_016571810.1 PREDICTED: DNA-directed RNA polymerase V subunit 5A [Capsicum
annuum]
Length = 227
Score = 166 bits (419), Expect = 1e-45
Identities = 86/218 (39%), Positives = 134/218 (61%), Gaps = 1/218 (0%)
Frame = -1
Query: 989 MGSCLEMFMDKGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRPPRE 810
+G CL +++ G ESHR F RRT+L+ML DRGF + +++++ L++FR +G P E
Sbjct: 15 LGPCLSSYVNAGSVESHRYFLGRRTILEMLKDRGFAIPNSEIDTTLEEFREKYGQSPDVE 74
Query: 809 NLRIITQKRSDPSYKISVAFSQKTGKEKLGISDLRYFLSSAL-PEGIRHAILIVPEKVTS 633
LRI R+D + K+ V F G + ++ +R L+ + E + IL++ ++TS
Sbjct: 75 RLRISAMHRNDLTNKVLVIFC---GPNTVKLNAIRAILTQIMNKESLSRLILVIQSQMTS 131
Query: 632 QAKKAVKEISGDFLVEMFEETDLLLNITQHALIPEHXXXXXXXXXXXXXKYSVMEHQLPR 453
QA KAV+ +S F VE+F+ TDLL+NIT+H L P H KY++ E QLPR
Sbjct: 132 QAMKAVENMS--FKVEIFQITDLLVNITKHVLKPRHELLTNTEKKKLLEKYNLEEKQLPR 189
Query: 452 MLESDPLAKYYGLRRGKVIKLVYSGDVTGDQTTYRCIW 339
M + DP+A+YYGL +G+V+K+ Y+ ++ TYRC+W
Sbjct: 190 MSQKDPIARYYGLEKGQVVKVTYNSEIIETHVTYRCVW 227