BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra29_contig00010131
         (492 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJA90766.1 DNA-directed RNA polymerase IV fifth largest subunit ...   106   1e-25
AJA90777.1 DNA-directed RNA polymerase IV fifth largest subunit ...    61   2e-08
AJA90761.1 DNA-directed RNA polymerase IV fifth largest subunit ...    57   5e-07
AJA90785.1 DNA-directed RNA polymerase IV fifth largest subunit ...    55   2e-06

>AJA90766.1 DNA-directed RNA polymerase IV fifth largest subunit [Ephedra
           trifurca]
          Length = 217

 Score =  106 bits (265), Expect = 1e-25
 Identities = 58/78 (74%), Positives = 61/78 (78%)
 Frame = +2

Query: 62  KGDRESHRLFKVGRWLLQMLDDNGFYFSDTDLNMPLA*FPVIFGNRLSRENLRIITQKRS 241
           KGD ESHRLFKV R LLQMLDD GFY SDTDLNMPL  F  IFGNR +RENLRIITQKRS
Sbjct: 11  KGDPESHRLFKVRRTLLQMLDDRGFYVSDTDLNMPLDQFRGIFGNRPARENLRIITQKRS 70

Query: 242 EPSYKILCHSFRGGTGSE 295
           +PSYKI   +F   TG E
Sbjct: 71  DPSYKISV-AFSQKTGKE 87


>AJA90777.1 DNA-directed RNA polymerase IV fifth largest subunit [Ginkgo
           biloba]
          Length = 214

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 32/66 (48%), Positives = 43/66 (65%)
 Frame = +2

Query: 62  KGDRESHRLFKVGRWLLQMLDDNGFYFSDTDLNMPLA*FPVIFGNRLSRENLRIITQKRS 241
           KG   SHRLF+V R + QML+D G+  +D+DLN  L  F V FG   +RE+L I T+ R+
Sbjct: 11  KGSVNSHRLFRVRRTVFQMLEDRGYTVTDSDLNTTLEQFRVNFGQEPNREHLFISTRSRA 70

Query: 242 EPSYKI 259
           +P  KI
Sbjct: 71  DPRDKI 76


>AJA90761.1 DNA-directed RNA polymerase IV fifth largest subunit [Cycas
           revoluta]
          Length = 213

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 30/66 (45%), Positives = 42/66 (63%)
 Frame = +2

Query: 62  KGDRESHRLFKVGRWLLQMLDDNGFYFSDTDLNMPLA*FPVIFGNRLSRENLRIITQKRS 241
           KG   SH+L++V R + QMLDD G+  SD+DL M LA F V +G   +R +L I T  RS
Sbjct: 11  KGSVNSHKLYRVRRTVFQMLDDRGYAVSDSDLTMTLAQFRVAYGEEPNRHDLFISTTSRS 70

Query: 242 EPSYKI 259
           + + +I
Sbjct: 71  DCNDRI 76


>AJA90785.1 DNA-directed RNA polymerase IV fifth largest subunit [Pinus
           canariensis]
          Length = 215

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 28/66 (42%), Positives = 37/66 (56%)
 Frame = +2

Query: 62  KGDRESHRLFKVGRWLLQMLDDNGFYFSDTDLNMPLA*FPVIFGNRLSRENLRIITQKRS 241
           KG   SHRL+++ R + QMLDD G+  SD DLN  L  F V +G    R+ L   T+ R+
Sbjct: 12  KGSTVSHRLYRIRRTVFQMLDDRGYEISDMDLNTTLPQFRVSYGEEPDRDQLNFSTKSRT 71

Query: 242 EPSYKI 259
               KI
Sbjct: 72  NSKDKI 77