BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra29_contig00009834
         (2430 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJA90767.1 DNA-directed RNA polymerase IV second largest subunit...  1412   0.0  
AJP06336.1 NRPD2, partial [Pinus tabuliformis]                       1066   0.0  
AJA90774.1 DNA-directed RNA polymerase IV second largest subunit...  1053   0.0  
AJA90758.1 DNA-directed RNA polymerase IV second largest subunit...  1051   0.0  
AJA90782.1 DNA-directed RNA polymerase IV second largest subunit...  1049   0.0  
AAY78476.1 RNA polymerase IV second largest subunit, partial [Gi...   934   0.0  
XP_008784482.1 PREDICTED: DNA-directed RNA polymerases IV and V ...   814   0.0  
XP_010937061.1 PREDICTED: DNA-directed RNA polymerases IV and V ...   810   0.0  
AQK46538.1 DNA-directed RNA polymerases IV and V subunit 2 [Zea ...   803   0.0  
ONM13161.1 nuclear RNA polymerase D2/E2 [Zea mays]                    801   0.0  
ONM13146.1 nuclear RNA polymerase D2/E2 [Zea mays] ONM13166.1 nu...   801   0.0  
ONM13147.1 nuclear RNA polymerase D2/E2 [Zea mays]                    801   0.0  
AQK46525.1 DNA-directed RNA polymerases IV and V subunit 2 [Zea ...   803   0.0  
AQK46524.1 DNA-directed RNA polymerases IV and V subunit 2 [Zea ...   803   0.0  
XP_002447199.1 hypothetical protein SORBIDRAFT_06g030300 [Sorghu...   803   0.0  
XP_002468227.1 hypothetical protein SORBIDRAFT_01g042100 [Sorghu...   803   0.0  
XP_012703111.1 PREDICTED: DNA-directed RNA polymerases IV and V ...   802   0.0  
AAY45706.1 RNA polymerase IV second largest subunit, partial [Ze...   799   0.0  
XP_020112440.1 DNA-directed RNA polymerases IV and V subunit 2-l...   800   0.0  
NP_001177299.1 required to maintain repression 7 [Zea mays] XP_0...   801   0.0  

>AJA90767.1 DNA-directed RNA polymerase IV second largest subunit [Ephedra
            trifurca]
          Length = 1272

 Score = 1412 bits (3655), Expect = 0.0
 Identities = 691/722 (95%), Positives = 695/722 (96%)
 Frame = +2

Query: 2    NGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYP 181
            NGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYP
Sbjct: 551  NGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYP 610

Query: 182  NPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDF 361
            NPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDF
Sbjct: 611  NPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDF 670

Query: 362  HSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEIKKDSQQKEIRIFCDAGRLL 541
            HSMTKVFVNGELLGICNNPDS+VQKMRNMRRKQCI+PLVEIKKDSQQKEIRIFCDAGRLL
Sbjct: 671  HSMTKVFVNGELLGICNNPDSVVQKMRNMRRKQCINPLVEIKKDSQQKEIRIFCDAGRLL 730

Query: 542  RPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXXXXXXXDAQIACGVDILQKA 721
            RPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNR           DAQIACGVDILQKA
Sbjct: 731  RPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRIIEIIGVEEEEDAQIACGVDILQKA 790

Query: 722  SITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKV 901
            SI+KG YPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKV
Sbjct: 791  SISKGFYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKV 850

Query: 902  RSDTSGHELLYPQKPLFRTLSYQCLSKPQLYNGQNAIVAVNVHYGYNQEDSLVANRASID 1081
            RSDTSGHELLYPQKPLFRTLSYQCLSKPQLYNGQNAIVAVNVHYGYNQEDSLVANRASID
Sbjct: 851  RSDTSGHELLYPQKPLFRTLSYQCLSKPQLYNGQNAIVAVNVHYGYNQEDSLVANRASID 910

Query: 1082 RGMFRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYS 1261
            RGMFRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYS
Sbjct: 911  RGMFRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYS 970

Query: 1262 GDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKF 1441
            GDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVP+VGDKF
Sbjct: 971  GDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPTVGDKF 1030

Query: 1442 SSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQLFECXXXXXXXXXXX 1621
            SSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQLFEC           
Sbjct: 1031 SSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQLFECALGKAIAASGA 1090

Query: 1622 XXXXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIFIGPTFYQRLIHMAE 1801
                TPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIFIGPTFYQRLIHMAE
Sbjct: 1091 AGDATPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIFIGPTFYQRLIHMAE 1150

Query: 1802 DKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSTM 1981
            DKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSTM
Sbjct: 1151 DKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSTM 1210

Query: 1982 HICSKCQMVAPVVLENGVRGPHCNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKFETE 2161
            HICSKCQMVAPVVLENGVRGPHCNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKFETE
Sbjct: 1211 HICSKCQMVAPVVLENGVRGPHCNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKFETE 1270

Query: 2162 QM 2167
            QM
Sbjct: 1271 QM 1272


>AJP06336.1 NRPD2, partial [Pinus tabuliformis]
          Length = 1348

 Score = 1066 bits (2756), Expect = 0.0
 Identities = 515/722 (71%), Positives = 595/722 (82%), Gaps = 3/722 (0%)
 Frame = +2

Query: 2    NGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYP 181
            +GL RAFSTG W HP     KCTGVVAS+KQ+NPLQV+SEMR++RL VQYAAKLGDARYP
Sbjct: 628  SGLVRAFSTGNWSHPMLATIKCTGVVASVKQINPLQVVSEMRKMRLRVQYAAKLGDARYP 687

Query: 182  NPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDF 361
            NPSYWGRVCFISTPDGENCGLVKNLAV  +VS NS+E+P++  L + GI KLD +   + 
Sbjct: 688  NPSYWGRVCFISTPDGENCGLVKNLAVIGLVSLNSAEEPVLAILNQCGISKLDQIPSPES 747

Query: 362  HSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEIKKDSQQKEIRIFCDAGRLL 541
               T +FVNGE +G  + PDSLV K+R++RRK+CI+P VEIKKD +Q EIRIF DAGRLL
Sbjct: 748  KCSTNIFVNGEWVGTHDEPDSLVNKLRSLRRKRCINPQVEIKKDDKQNEIRIFSDAGRLL 807

Query: 542  RPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXXXXXXXDAQIACGVDILQKA 721
            RPL VV+NQ+LCI + QL  FK  +NPF YL++             D QIACG+DIL +A
Sbjct: 808  RPLFVVKNQRLCISKRQLDKFKKSKNPFKYLMERGIIEILGVEEEEDVQIACGIDILCRA 867

Query: 722  SITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKV 901
                  YP F+HCELDPSFLLSLNA LIPFAN NLATRTLYQSEKHSRQAIG+Y  +   
Sbjct: 868  EKNPD-YPQFSHCELDPSFLLSLNAGLIPFANHNLATRTLYQSEKHSRQAIGYYEINQYA 926

Query: 902  RSDTSGHELLYPQKPLFRTLSYQCLSKPQLYNGQNAIVAVNVHYGYNQEDSLVANRASID 1081
            R DT+ H+L YPQ+PLF+T++ +CL++ Q YNGQN +VAVNVHYGYNQEDSLV N ASID
Sbjct: 927  RCDTTSHQLFYPQRPLFKTMTSECLNQVQFYNGQNPVVAVNVHYGYNQEDSLVTNHASID 986

Query: 1082 RGMFRSMHYRLFTSEAEYDENQPLN--SSRLDLDFGKPSGSNLK-IDKLDDDGLPFISSD 1252
            RG+FRSMH+  F SE ++DEN+  N  SSRL++DFGKP   NLK +DKLD+DGLPFI+SD
Sbjct: 987  RGLFRSMHFHTFVSETDHDENRSNNASSSRLEVDFGKPQPGNLKAVDKLDEDGLPFIASD 1046

Query: 1253 LYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVG 1432
            LYSGD+LIGKVG QPSD NFSLKLKHTEKGRVDQV+M TND GKK+A+VRLR++R PS+G
Sbjct: 1047 LYSGDILIGKVGSQPSDVNFSLKLKHTEKGRVDQVIMATNDDGKKFARVRLRDVRAPSLG 1106

Query: 1433 DKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQLFECXXXXXXXX 1612
            DKFSSMHGQKGVVGFIEEQENMPFTK+GIVPD+IINPHAFPSRQTPGQLFEC        
Sbjct: 1107 DKFSSMHGQKGVVGFIEEQENMPFTKEGIVPDVIINPHAFPSRQTPGQLFECALGKAIAS 1166

Query: 1613 XXXXXXXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIFIGPTFYQRLIH 1792
                   TPFRP+TVE +TERL  CGYQQWG E+MYNGRTG  +Q KIFIGPT+YQRLIH
Sbjct: 1167 SGIVGDATPFRPITVENITERLRSCGYQQWGKEQMYNGRTGGKMQTKIFIGPTYYQRLIH 1226

Query: 1793 MAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDF 1972
            MAEDK+KYRNHGPVHPLTR+PV DRKRHGGVKFGEMERDCMLAHGAT+NLLERLFYLSDF
Sbjct: 1227 MAEDKIKYRNHGPVHPLTRRPVADRKRHGGVKFGEMERDCMLAHGATANLLERLFYLSDF 1286

Query: 1973 STMHICSKCQMVAPVVLENGVRGPHCNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKF 2152
            S+MH+C +C+M+A VVL +GVRGP+C FCKTAKHVVKVNVPYACKLLY ELF+MGICL+F
Sbjct: 1287 SSMHVCGQCRMLATVVLRDGVRGPYCPFCKTAKHVVKVNVPYACKLLYHELFSMGICLRF 1346

Query: 2153 ET 2158
             T
Sbjct: 1347 ST 1348


>AJA90774.1 DNA-directed RNA polymerase IV second largest subunit [Ginkgo biloba]
          Length = 1328

 Score = 1053 bits (2724), Expect = 0.0
 Identities = 502/721 (69%), Positives = 592/721 (82%), Gaps = 1/721 (0%)
 Frame = +2

Query: 2    NGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYP 181
            NGL R+ STG W HP  Y  KCTGVVAS+K  NPLQ ++EMR++RL VQY+AKLGDARYP
Sbjct: 607  NGLVRSLSTGNWSHPIKYNVKCTGVVASLKLTNPLQTVTEMRKMRLQVQYSAKLGDARYP 666

Query: 182  NPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDF 361
            NPSYWGRVCFISTPDGENCGLVKNLAVT +VS +S+E+P+++ L + GI KLD +S  + 
Sbjct: 667  NPSYWGRVCFISTPDGENCGLVKNLAVTGLVSLHSAEEPILDILNECGITKLDQISSFNL 726

Query: 362  HSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEIKKDSQQKEIRIFCDAGRLL 541
                 +F+NGE +G  ++PD LV+K+R++RRKQ I P VEIK+D +Q EIRIF DAGR+L
Sbjct: 727  KGAANIFINGEWVGAYDDPDFLVEKLRDLRRKQRIHPHVEIKRDKKQNEIRIFSDAGRIL 786

Query: 542  RPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXXXXXXXDAQIACGVDILQKA 721
            RPL +V +Q+LCI Q Q+  FK   NPF YL++             D +IACGVDIL+ A
Sbjct: 787  RPLFIVRDQRLCISQKQIENFKKRGNPFKYLMERGIIEILGVEEEEDTKIACGVDILRMA 846

Query: 722  SITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKV 901
               +  YP FTHCELDPSFLLSL+A  IPF+N NLATRTLYQSEKHS+QAIGHY+T+ + 
Sbjct: 847  ENNRS-YPSFTHCELDPSFLLSLSAGFIPFSNHNLATRTLYQSEKHSKQAIGHYSTNPRA 905

Query: 902  RSDTSGHELLYPQKPLFRTLSYQCLSKPQLYNGQNAIVAVNVHYGYNQEDSLVANRASID 1081
            R DTS H+L YPQKPLF+T+S +CL+K Q +NGQNAIVAVNVHYGYNQEDSLVAN ASID
Sbjct: 906  RCDTSAHQLFYPQKPLFKTMSSECLNKMQFFNGQNAIVAVNVHYGYNQEDSLVANHASID 965

Query: 1082 RGMFRSMHYRLFTSEAEYDENQPLNSS-RLDLDFGKPSGSNLKIDKLDDDGLPFISSDLY 1258
            RG+FRSMH+  F SE ++ +N    SS R+++DFGKP   NLK+DKLDDDGLPFI + L 
Sbjct: 966  RGLFRSMHFHTFISETDHHDNDSKKSSFRVEVDFGKPQTGNLKVDKLDDDGLPFIGASLV 1025

Query: 1259 SGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDK 1438
            SGD+LIGKVGPQPSD NFSLKLKHTEKGRVDQV+M+ ND  KK+A+V LRE+R PS+GDK
Sbjct: 1026 SGDILIGKVGPQPSDVNFSLKLKHTEKGRVDQVIMSANDDDKKFARVCLREVRSPSLGDK 1085

Query: 1439 FSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQLFECXXXXXXXXXX 1618
            FSSMHGQKGVVGFIEEQENMPFT++GIVPDLIINPHAFPSRQTPGQLFEC          
Sbjct: 1086 FSSMHGQKGVVGFIEEQENMPFTQEGIVPDLIINPHAFPSRQTPGQLFECAFGKAIASSG 1145

Query: 1619 XXXXXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIFIGPTFYQRLIHMA 1798
                 TP+ P+T++Y+TE+LH+CGYQQWG E+MYNGRTG  LQ KIFIGPT+YQRLIHMA
Sbjct: 1146 VVGDATPYGPVTLQYITEQLHRCGYQQWGKEQMYNGRTGCKLQSKIFIGPTYYQRLIHMA 1205

Query: 1799 EDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFST 1978
            EDKMKYRNHGPVHPLTRQPV DRKRHGGVKFGEMERDCMLAHGAT+NLLERLF+LSDFST
Sbjct: 1206 EDKMKYRNHGPVHPLTRQPVADRKRHGGVKFGEMERDCMLAHGATANLLERLFFLSDFST 1265

Query: 1979 MHICSKCQMVAPVVLENGVRGPHCNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKFET 2158
            MH+C +C+ +A V+L +GVRGP+C FCKTAKH+VKVNVPYACKLLYQELF+MGICL+F T
Sbjct: 1266 MHVCRECRNMATVILRDGVRGPYCPFCKTAKHIVKVNVPYACKLLYQELFSMGICLRFST 1325

Query: 2159 E 2161
            E
Sbjct: 1326 E 1326


>AJA90758.1 DNA-directed RNA polymerase IV second largest subunit [Cycas
            revoluta]
          Length = 1348

 Score = 1051 bits (2719), Expect = 0.0
 Identities = 504/722 (69%), Positives = 592/722 (81%), Gaps = 2/722 (0%)
 Frame = +2

Query: 2    NGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYP 181
            NGL RAFSTG W HP  +  KCTG+VAS+KQ NPLQ +SEMR++RL VQYAAKLGDARY 
Sbjct: 626  NGLVRAFSTGNWSHPIKFNTKCTGIVASVKQTNPLQTVSEMRKMRLKVQYAAKLGDARYQ 685

Query: 182  NPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDF 361
            NPSYWGRVCFISTPDGENCGLVKNLAVT +VS +S+E+P++  L + GI KLD +SLS+ 
Sbjct: 686  NPSYWGRVCFISTPDGENCGLVKNLAVTGLVSLHSAEEPILNILNQCGIKKLDQISLSNL 745

Query: 362  HSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEIKKDSQQKEIRIFCDAGRLL 541
              MTK+F+NGE +G  ++P  LV K+R++RR+Q I P VEIK+D  Q E+RIF DAGR+L
Sbjct: 746  KGMTKIFINGEWVGAYDDPSFLVNKLRDLRRRQHIHPQVEIKRDHNQNEVRIFSDAGRIL 805

Query: 542  RPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXXXXXXXDAQIACGVDILQKA 721
            RPL +V++Q+LCI + Q+  FK    PF YL++             D QIA GVDIL KA
Sbjct: 806  RPLFIVKDQRLCISKQQIQKFKKSGKPFKYLMEKGVVEILGVEEEEDTQIAGGVDILFKA 865

Query: 722  SITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKV 901
                  YP FTHCELD SF+LSLNA LIPFANRNL+TR LYQSEKHS+QAIG+Y+T+ +V
Sbjct: 866  ENDPS-YPRFTHCELDASFILSLNAGLIPFANRNLSTRVLYQSEKHSKQAIGYYSTNPRV 924

Query: 902  RSDTSGHELLYPQKPLFRTLSYQCLSKPQLYNGQNAIVAVNVHYGYNQEDSLVANRASID 1081
            R +TS H+L YPQKPLF+T+S +CL+K   YNGQNA+VAVNVHYGYNQEDSL+AN ASID
Sbjct: 925  RCETSAHQLFYPQKPLFKTMSSECLNKVHFYNGQNAVVAVNVHYGYNQEDSLIANHASID 984

Query: 1082 RGMFRSMHYRLFTSEAEYDENQPLNSS--RLDLDFGKPSGSNLKIDKLDDDGLPFISSDL 1255
            RG+FRSMH+  FTSE ++ E+  + SS  RL++DFGKP   NL++DKLDDDGLP I+++L
Sbjct: 985  RGLFRSMHFHTFTSETDHCESDSVKSSSFRLEVDFGKPQTGNLRVDKLDDDGLPQIAANL 1044

Query: 1256 YSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGD 1435
             SGD LIGKVGPQPSD NFSLKLKHTEKGRVDQV+M+TND GKK A+V LRE+R PS+GD
Sbjct: 1045 LSGDTLIGKVGPQPSDVNFSLKLKHTEKGRVDQVIMSTNDDGKKIARVCLREVRYPSLGD 1104

Query: 1436 KFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQLFECXXXXXXXXX 1615
            KFSSMHGQKGVVGF+EEQENMPFT+ GIVPDLIINPHAFPSRQTPGQLFEC         
Sbjct: 1105 KFSSMHGQKGVVGFVEEQENMPFTQGGIVPDLIINPHAFPSRQTPGQLFECALGKVIASS 1164

Query: 1616 XXXXXXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIFIGPTFYQRLIHM 1795
                  TPFRPM+V Y+TE+LH+CGY+QWG E+MYNGRTG  +Q KIFIGPT+YQRLIHM
Sbjct: 1165 GVVGDATPFRPMSVSYITEQLHRCGYEQWGKEQMYNGRTGYKMQSKIFIGPTYYQRLIHM 1224

Query: 1796 AEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFS 1975
            AEDKMKYRNHGPVHPLTRQPV DRKRHGGVKFGEMERDCMLAHGAT+NL+ERLFYLSDF 
Sbjct: 1225 AEDKMKYRNHGPVHPLTRQPVADRKRHGGVKFGEMERDCMLAHGATANLMERLFYLSDFY 1284

Query: 1976 TMHICSKCQMVAPVVLENGVRGPHCNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKFE 2155
            +MHIC  C+MVA V+L NG+RGP+C FCKT KH+VKVNVPYACKLLYQELF+MGICL+F 
Sbjct: 1285 SMHICRGCRMVATVILRNGIRGPYCPFCKTVKHIVKVNVPYACKLLYQELFSMGICLRFS 1344

Query: 2156 TE 2161
            TE
Sbjct: 1345 TE 1346


>AJA90782.1 DNA-directed RNA polymerase IV second largest subunit [Pinus
            canariensis]
          Length = 1299

 Score = 1049 bits (2712), Expect = 0.0
 Identities = 508/722 (70%), Positives = 582/722 (80%), Gaps = 2/722 (0%)
 Frame = +2

Query: 2    NGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYP 181
            NGLARAFSTG W HPT    KCTGV+  + Q NPLQV+S MR+ RL VQYAAKLGDARYP
Sbjct: 577  NGLARAFSTGNWSHPTRPNVKCTGVIGMVNQTNPLQVVSAMRKTRLRVQYAAKLGDARYP 636

Query: 182  NPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDF 361
            NPSYWGRVCFISTPDGENCGLVKNLAVT VVS    E+P++  L + GI KLD +  S  
Sbjct: 637  NPSYWGRVCFISTPDGENCGLVKNLAVTGVVSLKLPEEPVLNVLNRCGIAKLDQMPSSGI 696

Query: 362  HSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEIKKDSQQKEIRIFCDAGRLL 541
               TK+FVNGE +G  +NP  LV+K+R++RR+  I P VEIKKD  Q EIRIF D+GRL+
Sbjct: 697  KCRTKIFVNGEWVGTSDNPVFLVEKLRDLRRRHRIHPQVEIKKDDGQNEIRIFSDSGRLM 756

Query: 542  RPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXXXXXXXDAQIACGVDILQKA 721
            RP  +V+NQ+LCI +  L  F+    PF YL++             DAQIACG+DIL+KA
Sbjct: 757  RPPFIVKNQRLCISKRHLEKFRKSSKPFKYLMETGIIELLGVEEEEDAQIACGIDILRKA 816

Query: 722  SITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKV 901
                  YP FTHCELDPSFLLSLNA LIPFANRNLATRTLYQSEKHSRQAIG+Y T+ + 
Sbjct: 817  QQNPE-YPQFTHCELDPSFLLSLNAGLIPFANRNLATRTLYQSEKHSRQAIGYYATNRRG 875

Query: 902  RSDTSGHELLYPQKPLFRTLSYQCLSKPQLYNGQNAIVAVNVHYGYNQEDSLVANRASID 1081
            R DT+ H+L YPQKPLF+T+S +C++    YNGQNA+VAVNVHYGYNQEDSLV N ASID
Sbjct: 876  RCDTTAHQLFYPQKPLFKTMSSECVNNMHFYNGQNAVVAVNVHYGYNQEDSLVTNHASID 935

Query: 1082 RGMFRSMHYRLFTSEAEYDENQPLN--SSRLDLDFGKPSGSNLKIDKLDDDGLPFISSDL 1255
            RG+FRSMH+  F SE E+DEN+  N  SSRL++DFGKP   NLK+DK+D DGLP I SD 
Sbjct: 936  RGLFRSMHFHSFVSETEHDENRLNNASSSRLEVDFGKPLTPNLKVDKIDTDGLPGIDSDF 995

Query: 1256 YSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGD 1435
            YSGD+LIGKVGPQPSD NFSLKLKHTEKGRVDQV++ TND GKK+A+VRLRE+R P +GD
Sbjct: 996  YSGDILIGKVGPQPSDGNFSLKLKHTEKGRVDQVVLATNDDGKKFARVRLREVRSPCLGD 1055

Query: 1436 KFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQLFECXXXXXXXXX 1615
            KFSSMHGQKGVVGFIEEQENMPFTK+GIVPD+IINPHAFPSRQTPGQLFEC         
Sbjct: 1056 KFSSMHGQKGVVGFIEEQENMPFTKEGIVPDIIINPHAFPSRQTPGQLFECALGKAIAAS 1115

Query: 1616 XXXXXXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIFIGPTFYQRLIHM 1795
                  TPFRP+TVE +TERL  CGYQ WG E+MYNGRTG  +Q +IF+GPT+YQRLIHM
Sbjct: 1116 GLVGDATPFRPITVESITERLKSCGYQPWGKEQMYNGRTGGKMQTRIFVGPTYYQRLIHM 1175

Query: 1796 AEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFS 1975
            AEDK+KYRNHGPVHPLTRQPV DRKRHGGVKFGEMERDCMLAHGAT+NLLERLFYLSDFS
Sbjct: 1176 AEDKIKYRNHGPVHPLTRQPVADRKRHGGVKFGEMERDCMLAHGATANLLERLFYLSDFS 1235

Query: 1976 TMHICSKCQMVAPVVLENGVRGPHCNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKFE 2155
            +MH+C +C+M+A VVL +GVRGP+C FCKTAKHVVKVNVPYACKLLY ELF+MGICL+F 
Sbjct: 1236 SMHVCGQCRMLATVVLRDGVRGPYCPFCKTAKHVVKVNVPYACKLLYHELFSMGICLRFS 1295

Query: 2156 TE 2161
            TE
Sbjct: 1296 TE 1297


>AAY78476.1 RNA polymerase IV second largest subunit, partial [Ginkgo biloba]
          Length = 651

 Score =  934 bits (2413), Expect = 0.0
 Identities = 446/650 (68%), Positives = 532/650 (81%), Gaps = 1/650 (0%)
 Frame = +2

Query: 215  STPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGE 394
            STPDGENCGLVKNLAVT +VS +S+E P+++ L + GI KLD +S  +      +F+NGE
Sbjct: 1    STPDGENCGLVKNLAVTGLVSLHSAEDPILDILNECGITKLDQISSFNLKGAANIFINGE 60

Query: 395  LLGICNNPDSLVQKMRNMRRKQCIDPLVEIKKDSQQKEIRIFCDAGRLLRPLLVVENQQL 574
             +G  ++PD LV+K+R++RRKQ I P  EIK+D +Q EIRIF DAGR+LRPL +V +Q+L
Sbjct: 61   WVGAYDDPDFLVEKLRDLRRKQRIHPHXEIKRDKKQNEIRIFSDAGRILRPLFIVRDQRL 120

Query: 575  CIKQHQLSTFKSCENPFLYLLKNRXXXXXXXXXXXDAQIACGVDILQKASITKGLYPPFT 754
            CI Q Q+  FK   NPF YL++             D +IACGVDIL+ A   +  YP FT
Sbjct: 121  CISQKQIENFKKRGNPFKYLMERGIIEILGVEEEEDTKIACGVDILRMAENNRS-YPSFT 179

Query: 755  HCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKVRSDTSGHELLY 934
            HCELDPSFLLSL+A  IPF+N NLATRTLYQSEKHS+QAIGHY+T+ + R DTS H+L Y
Sbjct: 180  HCELDPSFLLSLSAGFIPFSNHNLATRTLYQSEKHSKQAIGHYSTNPRARCDTSAHQLFY 239

Query: 935  PQKPLFRTLSYQCLSKPQLYNGQNAIVAVNVHYGYNQEDSLVANRASIDRGMFRSMHYRL 1114
            PQKPLF+T+S +CL+K Q +NGQNAIVAVNVHYGYNQEDSLVAN ASIDRG+FRSMH+  
Sbjct: 240  PQKPLFKTMSSECLNKMQFFNGQNAIVAVNVHYGYNQEDSLVANHASIDRGLFRSMHFHT 299

Query: 1115 FTSEAEYDENQPLNSS-RLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGP 1291
            F SE ++ +N    SS R+++DFGKP   NLK+DKLDDDGLPFI + L SGD+LIGKVGP
Sbjct: 300  FISETDHHDNDSKKSSFRVEVDFGKPQTGNLKVDKLDDDGLPFIGASLVSGDILIGKVGP 359

Query: 1292 QPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVV 1471
            QPSD NFSLKLKHTEKGRVDQV+M+ ND  KK+A+V LRE+R PS+GDKFSSMHGQKGVV
Sbjct: 360  QPSDVNFSLKLKHTEKGRVDQVVMSANDDDKKFARVCLREVRSPSLGDKFSSMHGQKGVV 419

Query: 1472 GFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQLFECXXXXXXXXXXXXXXXTPFRPM 1651
            GFIEEQENMPFT++GIVPDLIINPHAFPSRQTPGQLFEC               TP+ P+
Sbjct: 420  GFIEEQENMPFTQEGIVPDLIINPHAFPSRQTPGQLFECAFGKAIASSGVVGDATPYGPV 479

Query: 1652 TVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGP 1831
            T++Y+TE+LH+CGYQQWG E+MYNGRTG  LQ KIFIGPT+YQRLIHMAEDKMKYRNHGP
Sbjct: 480  TLQYITEQLHRCGYQQWGKEQMYNGRTGCKLQSKIFIGPTYYQRLIHMAEDKMKYRNHGP 539

Query: 1832 VHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVA 2011
            VHPLTRQPV DRKRHGGVKFGEMERDCMLAHGAT+NLLERLF+LSDFSTMH+C +C+ +A
Sbjct: 540  VHPLTRQPVADRKRHGGVKFGEMERDCMLAHGATANLLERLFFLSDFSTMHVCRECRNMA 599

Query: 2012 PVVLENGVRGPHCNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKFETE 2161
             V+L +GVRGP+C FCKTAKH+VKVNVPYACK+LYQELF++G+CL+F+TE
Sbjct: 600  TVILRDGVRGPYCPFCKTAKHIVKVNVPYACKMLYQELFSIGMCLRFQTE 649


>XP_008784482.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Phoenix dactylifera]
          Length = 1189

 Score =  814 bits (2102), Expect = 0.0
 Identities = 410/738 (55%), Positives = 517/738 (70%), Gaps = 18/738 (2%)
 Frame = +2

Query: 2    NGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYP 181
            NGL RAFSTG W HP     +C+G+VA++++ NPLQ++S++R+ R  V YA K GDARYP
Sbjct: 460  NGLNRAFSTGAWCHPYKRTERCSGIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGDARYP 519

Query: 182  NPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDF 361
            NPSYWG++CF+STPDGENCGLVKNLAVT++VS   +E P+++ L   G+ KLD++SLS  
Sbjct: 520  NPSYWGKLCFLSTPDGENCGLVKNLAVTALVSLKVTE-PILDKLISCGMEKLDEISLSSI 578

Query: 362  HSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEIKKDSQQKEIRIFCDAGRLL 541
             +M KVF+NG+ +G+C +  S V K+R MRR + I P VEIK+D  Q+E+RIF DAGR+L
Sbjct: 579  SNMDKVFMNGDWVGVCADSTSFVAKLRCMRRARLIHPQVEIKRDKHQREVRIFSDAGRIL 638

Query: 542  RPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXXXXXXXDAQIACGVDILQKA 721
            RPLL+VEN +      + S  K     F YL+              D   A G+  L   
Sbjct: 639  RPLLIVENLK------KTSKLKGGVCSFQYLMDEGIIELIGVEEEEDCHTAWGIRHLFMG 692

Query: 722  SITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKV 901
                G  P ++HCELD SFLL L+  +IPFAN N A R LYQ+EKHS+QAIG  TT+  +
Sbjct: 693  D-EGGPAPKYSHCELDVSFLLGLSCGIIPFANHNFARRVLYQAEKHSQQAIGFSTTNPNI 751

Query: 902  RSDTSGHELLYPQKPLFRTLSYQCLSK-------------PQLYNGQNAIVAVNVHYGYN 1042
            R DT  H+L YPQKPLFRT+   CL +             P+ +NGQNAIVAVNVH GYN
Sbjct: 752  RVDTLSHQLYYPQKPLFRTVIADCLGRADYSLRRKDSMPRPEYFNGQNAIVAVNVHQGYN 811

Query: 1043 QEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKLD 1222
            QEDSLV NRAS++RGMFR+ H+R + +E E  E       R  +DFGK      ++D LD
Sbjct: 812  QEDSLVMNRASLERGMFRTEHFRSYKAEVENKELTKRFKLRDKVDFGKMQSKKGRVDSLD 871

Query: 1223 DDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVR 1402
            DDG P+I + L SGD++IGKV     D    +KLKHTEKG V +V+++ ND GK +A V 
Sbjct: 872  DDGFPYIGASLQSGDIVIGKVAESGEDHG--IKLKHTEKGMVQKVVLSANDEGKNFAVVT 929

Query: 1403 LREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQLF 1582
            LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT QGIVPD++INPHAFP+RQTPGQL 
Sbjct: 930  LRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQLL 989

Query: 1583 ECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIFI 1762
            E                TPF   +V+ +TE+LH+ G+ +WG EK+ NGRTG  ++  IF+
Sbjct: 990  EAALGKGIACGGSVRYATPFTTASVDVITEQLHRAGFSRWGSEKVLNGRTGEVMRSMIFM 1049

Query: 1763 GPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNL 1942
            GPTFYQRLIHMAEDK+K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHGA SNL
Sbjct: 1050 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAASNL 1109

Query: 1943 LERLFYLSDFSTMHICSKCQMVA-----PVVLENGVRGPHCNFCKTAKHVVKVNVPYACK 2107
             ERLF LSDFS MHIC  C+  A     PVV  N +RGP+CN+C++++++VK+NVPY  K
Sbjct: 1110 HERLFTLSDFSQMHICQTCKRAANVILRPVVGGNKIRGPYCNYCQSSENIVKINVPYGAK 1169

Query: 2108 LLYQELFAMGICLKFETE 2161
            LLYQELF+MGICLKF+TE
Sbjct: 1170 LLYQELFSMGICLKFDTE 1187


>XP_010937061.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2 [Elaeis
            guineensis]
          Length = 1189

 Score =  810 bits (2093), Expect = 0.0
 Identities = 409/738 (55%), Positives = 516/738 (69%), Gaps = 18/738 (2%)
 Frame = +2

Query: 2    NGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYP 181
            NGL RAFSTG W HP     +C+G+VA++++ NPLQ++S++R+ R  V YA K GDARYP
Sbjct: 460  NGLNRAFSTGAWCHPYKRTERCSGIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGDARYP 519

Query: 182  NPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDF 361
            NPSYWG++CF+STPDGENCGLVKNLAVT++VS   +E P+++ L   G+ KLD++SL+  
Sbjct: 520  NPSYWGKLCFLSTPDGENCGLVKNLAVTALVSLKVTE-PILDKLISCGMEKLDEISLTSV 578

Query: 362  HSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEIKKDSQQKEIRIFCDAGRLL 541
             SM KVF+NG+ +G+C +  S V ++R MRR   I   VEIK+D  Q+E+RIF DAGR+L
Sbjct: 579  SSMDKVFLNGDWVGVCADSSSFVARLRCMRRATLIHSQVEIKRDKHQREVRIFSDAGRIL 638

Query: 542  RPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXXXXXXXDAQIACGVDILQKA 721
            RPLL+VEN +      ++S  K     F +L+              D   A G+  L   
Sbjct: 639  RPLLIVENLE------KISKLKGGVCSFQHLMDQGIIELIGVEEEEDCPTAWGIRHLFMG 692

Query: 722  SITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKV 901
               +   P +THCELD SFLL L+  +IPFAN N A R LYQ+EKHS+QAIG  TT+  +
Sbjct: 693  DEGQPA-PKYTHCELDVSFLLGLSCGIIPFANHNFARRVLYQAEKHSQQAIGFSTTNPNI 751

Query: 902  RSDTSGHELLYPQKPLFRTLSYQCLSK-------------PQLYNGQNAIVAVNVHYGYN 1042
            R DT  H+L YPQKPLFRT+   CL +             P+ +NGQNAIVAVNVH GYN
Sbjct: 752  RVDTLSHQLYYPQKPLFRTVIADCLGRAVHSLGRKDSMPRPEYFNGQNAIVAVNVHQGYN 811

Query: 1043 QEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKLD 1222
            QEDSLV NRAS++RGMFR+ H+R + +E E  E       R  +DFGK      K+D LD
Sbjct: 812  QEDSLVMNRASLERGMFRTEHFRSYKAEVENKELTKRFKLRDKVDFGKMQSKKGKVDSLD 871

Query: 1223 DDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVR 1402
            DDG P+I + L SGD++IGKV     D    +KLKHTEKG V +V+++ ND GK +A V 
Sbjct: 872  DDGFPYIGASLQSGDIVIGKVAESGEDHG--IKLKHTEKGMVQKVVLSANDEGKNFAVVT 929

Query: 1403 LREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQLF 1582
            LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT QGIVPD++INPHAFP+RQTPGQL 
Sbjct: 930  LRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQLL 989

Query: 1583 ECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIFI 1762
            E                TPF   +V+ +TE+LH+ G+ +WG EK+ NGRTG  ++  IF+
Sbjct: 990  EAALGKGIACGGSVRYATPFTTASVDVITEQLHRAGFSRWGSEKVLNGRTGEVMRSMIFM 1049

Query: 1763 GPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNL 1942
            GPTFYQRLIHMAEDK+K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHGA SNL
Sbjct: 1050 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAASNL 1109

Query: 1943 LERLFYLSDFSTMHICSKCQMVA-----PVVLENGVRGPHCNFCKTAKHVVKVNVPYACK 2107
             ERLF LSDFS MHIC  C+  A     PVV  N +RGP+CNFC++++++VK+NVPY  K
Sbjct: 1110 HERLFMLSDFSQMHICQTCRRAANVILRPVVGGNKIRGPYCNFCQSSENIVKINVPYGAK 1169

Query: 2108 LLYQELFAMGICLKFETE 2161
            LLYQELF+MGICLKF+TE
Sbjct: 1170 LLYQELFSMGICLKFDTE 1187


>AQK46538.1 DNA-directed RNA polymerases IV and V subunit 2 [Zea mays]
          Length = 1009

 Score =  803 bits (2075), Expect = 0.0
 Identities = 401/739 (54%), Positives = 513/739 (69%), Gaps = 19/739 (2%)
 Frame = +2

Query: 2    NGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYP 181
            NGL RAFSTG+W HP   A +C+G+VA++++ NPLQ++S++R+ R  V YA K GDARYP
Sbjct: 281  NGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDARYP 340

Query: 182  NPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDF 361
            NPSYWG++CF+STPDGENCGLVKNLAVTS+VS    + PLIE     G+ KL+D+     
Sbjct: 341  NPSYWGKLCFMSTPDGENCGLVKNLAVTSIVSSKVVQ-PLIESFISCGMNKLNDIPTEHI 399

Query: 362  HSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEIKKDSQQKEIRIFCDAGRLL 541
              M K+F+NG  LG C++  S V ++R MRR   IDP VEIK+D   KE+R+F DAGR+L
Sbjct: 400  QRMDKIFLNGNWLGSCSDSASFVFRLRCMRRSSLIDPQVEIKRDKHYKEVRLFSDAGRIL 459

Query: 542  RPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXXXXXXXDAQIACGVDILQKA 721
            RPLLVVEN     K       K     F  L++             D Q A G+  L ++
Sbjct: 460  RPLLVVENLNKIRKP------KGRSFSFQELMQQEIIEFIGVEEEEDIQCAWGIRHLFES 513

Query: 722  SITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKV 901
               +G    +THCELDPSF+L L+  +IPFAN N A R LYQSEKHS+QAIG+ T++ ++
Sbjct: 514  ---EGAISSYTHCELDPSFILGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTSNPRI 570

Query: 902  RSDTSGHELLYPQKPLFRTLSYQCL--------------SKPQLYNGQNAIVAVNVHYGY 1039
            R DT  H+L YPQ+PLF+T+   CL              ++P+ +NGQNAIVAVNVH G+
Sbjct: 571  RVDTLSHQLYYPQRPLFKTVIADCLGRSDCTTFGRKDDFTRPEYFNGQNAIVAVNVHQGF 630

Query: 1040 NQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKL 1219
            NQEDSLV NRAS++RGMFR+ H R + ++ E  +       +  +DFGK      ++D L
Sbjct: 631  NQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNL 690

Query: 1220 DDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKV 1399
            DDDGLP+I + L + D++IGKV     D   S+KLKHTEKG V +VL++ ND GK +A V
Sbjct: 691  DDDGLPYIGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVV 748

Query: 1400 RLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQL 1579
             LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT  GIVPD++INPHAFP+RQTPGQL
Sbjct: 749  TLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHDGIVPDIVINPHAFPTRQTPGQL 808

Query: 1580 FECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIF 1759
             E                TPF   +V+ + E+LHK GY +WG E + NGRTG  ++  +F
Sbjct: 809  LEAALGKGIACKGTMRYATPFTTASVDVIAEQLHKAGYSRWGAENVLNGRTGERMKSLVF 868

Query: 1760 IGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSN 1939
            +GPTFYQRLIHM+EDK+KYRN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHG+ +N
Sbjct: 869  MGPTFYQRLIHMSEDKVKYRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAAN 928

Query: 1940 LLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPHCNFCKTAKHVVKVNVPYAC 2104
            L ERLF LSDFS MHIC  C+ VA VV+ +      +RGP+C FCK+++++V++NVPY  
Sbjct: 929  LHERLFMLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGA 988

Query: 2105 KLLYQELFAMGICLKFETE 2161
            KLLYQELF+MGICLKFETE
Sbjct: 989  KLLYQELFSMGICLKFETE 1007


>ONM13161.1 nuclear RNA polymerase D2/E2 [Zea mays]
          Length = 966

 Score =  801 bits (2068), Expect = 0.0
 Identities = 398/739 (53%), Positives = 511/739 (69%), Gaps = 19/739 (2%)
 Frame = +2

Query: 2    NGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYP 181
            NGL RAFSTG+W HP   A +C+G+VA++++ NPLQ++S++R+ R  V YA K GDARYP
Sbjct: 238  NGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDARYP 297

Query: 182  NPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDF 361
            NPSYWG++CF+STPDGENCGLVKNLAVT++VS    + PLIE     G+ KL+D+     
Sbjct: 298  NPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQ-PLIESFISCGMSKLNDIPTEHI 356

Query: 362  HSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEIKKDSQQKEIRIFCDAGRLL 541
              M K+F+NG  +G C N  S V ++R MRR   IDP VEIK+D    E+R+F DAGR+L
Sbjct: 357  QRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAGRIL 416

Query: 542  RPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXXXXXXXDAQIACGVDILQKA 721
            RPLLVVEN     K       K     F  L++             D Q A G+  L ++
Sbjct: 417  RPLLVVENLNKIRKP------KGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLFES 470

Query: 722  SITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKV 901
               +G    +THCELDPSFLL L+  +IPFAN N A R LYQSEKHS+QAIG+ TT+  +
Sbjct: 471  ---EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHI 527

Query: 902  RSDTSGHELLYPQKPLFRTLSYQCL--------------SKPQLYNGQNAIVAVNVHYGY 1039
            R DT  H+L YPQ+PLF+T+   CL              ++P+ +NGQNAIVAVNVH G+
Sbjct: 528  RVDTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGF 587

Query: 1040 NQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKL 1219
            NQEDSLV NRAS++RGMFR+ H R + ++ E  +       +  +DFGK      ++D L
Sbjct: 588  NQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNL 647

Query: 1220 DDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKV 1399
            DDDGLP++ + L + D++IGKV     D   S+KLKHTEKG V +VL++ ND GK +A V
Sbjct: 648  DDDGLPYVGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVV 705

Query: 1400 RLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQL 1579
             LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT +GIVPD++INPHAFP+RQTPGQL
Sbjct: 706  TLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQL 765

Query: 1580 FECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIF 1759
             E                TPF   +V+ + E+LH+ GY +WG E + NGRTG  +Q  +F
Sbjct: 766  LEAALGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRWGSENVLNGRTGERVQSLVF 825

Query: 1760 IGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSN 1939
            +GPTFYQRLIHM+EDK+K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHG+ +N
Sbjct: 826  MGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAAN 885

Query: 1940 LLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPHCNFCKTAKHVVKVNVPYAC 2104
            L ERLF LSDFS MHIC  C+ VA VV+ +      +RGP+C FCK+++++V++NVPY  
Sbjct: 886  LHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGA 945

Query: 2105 KLLYQELFAMGICLKFETE 2161
            KLLYQELF+MGICLKFET+
Sbjct: 946  KLLYQELFSMGICLKFETQ 964


>ONM13146.1 nuclear RNA polymerase D2/E2 [Zea mays] ONM13166.1 nuclear RNA
            polymerase D2/E2 [Zea mays]
          Length = 972

 Score =  801 bits (2068), Expect = 0.0
 Identities = 398/739 (53%), Positives = 511/739 (69%), Gaps = 19/739 (2%)
 Frame = +2

Query: 2    NGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYP 181
            NGL RAFSTG+W HP   A +C+G+VA++++ NPLQ++S++R+ R  V YA K GDARYP
Sbjct: 244  NGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDARYP 303

Query: 182  NPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDF 361
            NPSYWG++CF+STPDGENCGLVKNLAVT++VS    + PLIE     G+ KL+D+     
Sbjct: 304  NPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQ-PLIESFISCGMSKLNDIPTEHI 362

Query: 362  HSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEIKKDSQQKEIRIFCDAGRLL 541
              M K+F+NG  +G C N  S V ++R MRR   IDP VEIK+D    E+R+F DAGR+L
Sbjct: 363  QRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAGRIL 422

Query: 542  RPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXXXXXXXDAQIACGVDILQKA 721
            RPLLVVEN     K       K     F  L++             D Q A G+  L ++
Sbjct: 423  RPLLVVENLNKIRKP------KGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLFES 476

Query: 722  SITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKV 901
               +G    +THCELDPSFLL L+  +IPFAN N A R LYQSEKHS+QAIG+ TT+  +
Sbjct: 477  ---EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHI 533

Query: 902  RSDTSGHELLYPQKPLFRTLSYQCL--------------SKPQLYNGQNAIVAVNVHYGY 1039
            R DT  H+L YPQ+PLF+T+   CL              ++P+ +NGQNAIVAVNVH G+
Sbjct: 534  RVDTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGF 593

Query: 1040 NQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKL 1219
            NQEDSLV NRAS++RGMFR+ H R + ++ E  +       +  +DFGK      ++D L
Sbjct: 594  NQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNL 653

Query: 1220 DDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKV 1399
            DDDGLP++ + L + D++IGKV     D   S+KLKHTEKG V +VL++ ND GK +A V
Sbjct: 654  DDDGLPYVGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVV 711

Query: 1400 RLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQL 1579
             LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT +GIVPD++INPHAFP+RQTPGQL
Sbjct: 712  TLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQL 771

Query: 1580 FECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIF 1759
             E                TPF   +V+ + E+LH+ GY +WG E + NGRTG  +Q  +F
Sbjct: 772  LEAALGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRWGSENVLNGRTGERVQSLVF 831

Query: 1760 IGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSN 1939
            +GPTFYQRLIHM+EDK+K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHG+ +N
Sbjct: 832  MGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAAN 891

Query: 1940 LLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPHCNFCKTAKHVVKVNVPYAC 2104
            L ERLF LSDFS MHIC  C+ VA VV+ +      +RGP+C FCK+++++V++NVPY  
Sbjct: 892  LHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGA 951

Query: 2105 KLLYQELFAMGICLKFETE 2161
            KLLYQELF+MGICLKFET+
Sbjct: 952  KLLYQELFSMGICLKFETQ 970


>ONM13147.1 nuclear RNA polymerase D2/E2 [Zea mays]
          Length = 1034

 Score =  801 bits (2068), Expect = 0.0
 Identities = 398/739 (53%), Positives = 511/739 (69%), Gaps = 19/739 (2%)
 Frame = +2

Query: 2    NGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYP 181
            NGL RAFSTG+W HP   A +C+G+VA++++ NPLQ++S++R+ R  V YA K GDARYP
Sbjct: 306  NGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDARYP 365

Query: 182  NPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDF 361
            NPSYWG++CF+STPDGENCGLVKNLAVT++VS    + PLIE     G+ KL+D+     
Sbjct: 366  NPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQ-PLIESFISCGMSKLNDIPTEHI 424

Query: 362  HSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEIKKDSQQKEIRIFCDAGRLL 541
              M K+F+NG  +G C N  S V ++R MRR   IDP VEIK+D    E+R+F DAGR+L
Sbjct: 425  QRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAGRIL 484

Query: 542  RPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXXXXXXXDAQIACGVDILQKA 721
            RPLLVVEN     K       K     F  L++             D Q A G+  L ++
Sbjct: 485  RPLLVVENLNKIRKP------KGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLFES 538

Query: 722  SITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKV 901
               +G    +THCELDPSFLL L+  +IPFAN N A R LYQSEKHS+QAIG+ TT+  +
Sbjct: 539  ---EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHI 595

Query: 902  RSDTSGHELLYPQKPLFRTLSYQCL--------------SKPQLYNGQNAIVAVNVHYGY 1039
            R DT  H+L YPQ+PLF+T+   CL              ++P+ +NGQNAIVAVNVH G+
Sbjct: 596  RVDTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGF 655

Query: 1040 NQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKL 1219
            NQEDSLV NRAS++RGMFR+ H R + ++ E  +       +  +DFGK      ++D L
Sbjct: 656  NQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNL 715

Query: 1220 DDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKV 1399
            DDDGLP++ + L + D++IGKV     D   S+KLKHTEKG V +VL++ ND GK +A V
Sbjct: 716  DDDGLPYVGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVV 773

Query: 1400 RLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQL 1579
             LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT +GIVPD++INPHAFP+RQTPGQL
Sbjct: 774  TLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQL 833

Query: 1580 FECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIF 1759
             E                TPF   +V+ + E+LH+ GY +WG E + NGRTG  +Q  +F
Sbjct: 834  LEAALGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRWGSENVLNGRTGERVQSLVF 893

Query: 1760 IGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSN 1939
            +GPTFYQRLIHM+EDK+K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHG+ +N
Sbjct: 894  MGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAAN 953

Query: 1940 LLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPHCNFCKTAKHVVKVNVPYAC 2104
            L ERLF LSDFS MHIC  C+ VA VV+ +      +RGP+C FCK+++++V++NVPY  
Sbjct: 954  LHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGA 1013

Query: 2105 KLLYQELFAMGICLKFETE 2161
            KLLYQELF+MGICLKFET+
Sbjct: 1014 KLLYQELFSMGICLKFETQ 1032


>AQK46525.1 DNA-directed RNA polymerases IV and V subunit 2 [Zea mays]
          Length = 1201

 Score =  803 bits (2075), Expect = 0.0
 Identities = 401/739 (54%), Positives = 513/739 (69%), Gaps = 19/739 (2%)
 Frame = +2

Query: 2    NGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYP 181
            NGL RAFSTG+W HP   A +C+G+VA++++ NPLQ++S++R+ R  V YA K GDARYP
Sbjct: 473  NGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDARYP 532

Query: 182  NPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDF 361
            NPSYWG++CF+STPDGENCGLVKNLAVTS+VS    + PLIE     G+ KL+D+     
Sbjct: 533  NPSYWGKLCFMSTPDGENCGLVKNLAVTSIVSSKVVQ-PLIESFISCGMNKLNDIPTEHI 591

Query: 362  HSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEIKKDSQQKEIRIFCDAGRLL 541
              M K+F+NG  LG C++  S V ++R MRR   IDP VEIK+D   KE+R+F DAGR+L
Sbjct: 592  QRMDKIFLNGNWLGSCSDSASFVFRLRCMRRSSLIDPQVEIKRDKHYKEVRLFSDAGRIL 651

Query: 542  RPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXXXXXXXDAQIACGVDILQKA 721
            RPLLVVEN     K       K     F  L++             D Q A G+  L ++
Sbjct: 652  RPLLVVENLNKIRKP------KGRSFSFQELMQQEIIEFIGVEEEEDIQCAWGIRHLFES 705

Query: 722  SITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKV 901
               +G    +THCELDPSF+L L+  +IPFAN N A R LYQSEKHS+QAIG+ T++ ++
Sbjct: 706  ---EGAISSYTHCELDPSFILGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTSNPRI 762

Query: 902  RSDTSGHELLYPQKPLFRTLSYQCL--------------SKPQLYNGQNAIVAVNVHYGY 1039
            R DT  H+L YPQ+PLF+T+   CL              ++P+ +NGQNAIVAVNVH G+
Sbjct: 763  RVDTLSHQLYYPQRPLFKTVIADCLGRSDCTTFGRKDDFTRPEYFNGQNAIVAVNVHQGF 822

Query: 1040 NQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKL 1219
            NQEDSLV NRAS++RGMFR+ H R + ++ E  +       +  +DFGK      ++D L
Sbjct: 823  NQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNL 882

Query: 1220 DDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKV 1399
            DDDGLP+I + L + D++IGKV     D   S+KLKHTEKG V +VL++ ND GK +A V
Sbjct: 883  DDDGLPYIGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVV 940

Query: 1400 RLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQL 1579
             LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT  GIVPD++INPHAFP+RQTPGQL
Sbjct: 941  TLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHDGIVPDIVINPHAFPTRQTPGQL 1000

Query: 1580 FECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIF 1759
             E                TPF   +V+ + E+LHK GY +WG E + NGRTG  ++  +F
Sbjct: 1001 LEAALGKGIACKGTMRYATPFTTASVDVIAEQLHKAGYSRWGAENVLNGRTGERMKSLVF 1060

Query: 1760 IGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSN 1939
            +GPTFYQRLIHM+EDK+KYRN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHG+ +N
Sbjct: 1061 MGPTFYQRLIHMSEDKVKYRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAAN 1120

Query: 1940 LLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPHCNFCKTAKHVVKVNVPYAC 2104
            L ERLF LSDFS MHIC  C+ VA VV+ +      +RGP+C FCK+++++V++NVPY  
Sbjct: 1121 LHERLFMLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGA 1180

Query: 2105 KLLYQELFAMGICLKFETE 2161
            KLLYQELF+MGICLKFETE
Sbjct: 1181 KLLYQELFSMGICLKFETE 1199


>AQK46524.1 DNA-directed RNA polymerases IV and V subunit 2 [Zea mays] AQK46537.1
            DNA-directed RNA polymerases IV and V subunit 2 [Zea
            mays]
          Length = 1229

 Score =  803 bits (2075), Expect = 0.0
 Identities = 401/739 (54%), Positives = 513/739 (69%), Gaps = 19/739 (2%)
 Frame = +2

Query: 2    NGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYP 181
            NGL RAFSTG+W HP   A +C+G+VA++++ NPLQ++S++R+ R  V YA K GDARYP
Sbjct: 501  NGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDARYP 560

Query: 182  NPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDF 361
            NPSYWG++CF+STPDGENCGLVKNLAVTS+VS    + PLIE     G+ KL+D+     
Sbjct: 561  NPSYWGKLCFMSTPDGENCGLVKNLAVTSIVSSKVVQ-PLIESFISCGMNKLNDIPTEHI 619

Query: 362  HSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEIKKDSQQKEIRIFCDAGRLL 541
              M K+F+NG  LG C++  S V ++R MRR   IDP VEIK+D   KE+R+F DAGR+L
Sbjct: 620  QRMDKIFLNGNWLGSCSDSASFVFRLRCMRRSSLIDPQVEIKRDKHYKEVRLFSDAGRIL 679

Query: 542  RPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXXXXXXXDAQIACGVDILQKA 721
            RPLLVVEN     K       K     F  L++             D Q A G+  L ++
Sbjct: 680  RPLLVVENLNKIRKP------KGRSFSFQELMQQEIIEFIGVEEEEDIQCAWGIRHLFES 733

Query: 722  SITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKV 901
               +G    +THCELDPSF+L L+  +IPFAN N A R LYQSEKHS+QAIG+ T++ ++
Sbjct: 734  ---EGAISSYTHCELDPSFILGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTSNPRI 790

Query: 902  RSDTSGHELLYPQKPLFRTLSYQCL--------------SKPQLYNGQNAIVAVNVHYGY 1039
            R DT  H+L YPQ+PLF+T+   CL              ++P+ +NGQNAIVAVNVH G+
Sbjct: 791  RVDTLSHQLYYPQRPLFKTVIADCLGRSDCTTFGRKDDFTRPEYFNGQNAIVAVNVHQGF 850

Query: 1040 NQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKL 1219
            NQEDSLV NRAS++RGMFR+ H R + ++ E  +       +  +DFGK      ++D L
Sbjct: 851  NQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNL 910

Query: 1220 DDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKV 1399
            DDDGLP+I + L + D++IGKV     D   S+KLKHTEKG V +VL++ ND GK +A V
Sbjct: 911  DDDGLPYIGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVV 968

Query: 1400 RLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQL 1579
             LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT  GIVPD++INPHAFP+RQTPGQL
Sbjct: 969  TLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHDGIVPDIVINPHAFPTRQTPGQL 1028

Query: 1580 FECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIF 1759
             E                TPF   +V+ + E+LHK GY +WG E + NGRTG  ++  +F
Sbjct: 1029 LEAALGKGIACKGTMRYATPFTTASVDVIAEQLHKAGYSRWGAENVLNGRTGERMKSLVF 1088

Query: 1760 IGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSN 1939
            +GPTFYQRLIHM+EDK+KYRN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHG+ +N
Sbjct: 1089 MGPTFYQRLIHMSEDKVKYRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAAN 1148

Query: 1940 LLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPHCNFCKTAKHVVKVNVPYAC 2104
            L ERLF LSDFS MHIC  C+ VA VV+ +      +RGP+C FCK+++++V++NVPY  
Sbjct: 1149 LHERLFMLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGA 1208

Query: 2105 KLLYQELFAMGICLKFETE 2161
            KLLYQELF+MGICLKFETE
Sbjct: 1209 KLLYQELFSMGICLKFETE 1227


>XP_002447199.1 hypothetical protein SORBIDRAFT_06g030300 [Sorghum bicolor]
            EES11527.1 hypothetical protein SORBI_006G236000 [Sorghum
            bicolor]
          Length = 1239

 Score =  803 bits (2074), Expect = 0.0
 Identities = 399/739 (53%), Positives = 512/739 (69%), Gaps = 19/739 (2%)
 Frame = +2

Query: 2    NGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYP 181
            NGL RAFSTG+W HP   A +C+G+VA++++ NPLQ++S++R+ R  V YA K GDARYP
Sbjct: 511  NGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDARYP 570

Query: 182  NPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDF 361
            NPSYWG++CF+STPDGENCGLVKNLAVT++VS    + PLIE     G+ KL+D+     
Sbjct: 571  NPSYWGKLCFLSTPDGENCGLVKNLAVTAIVSSRVGQ-PLIESFISCGMSKLNDIPTEHI 629

Query: 362  HSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEIKKDSQQKEIRIFCDAGRLL 541
              M K+F+NG  +G C +  S V ++R MRR   IDP VEIK+D   KE+R+F DAGR+L
Sbjct: 630  QRMDKIFLNGNWVGSCKDSASFVFRLRCMRRSSMIDPQVEIKRDKHHKEVRVFSDAGRIL 689

Query: 542  RPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXXXXXXXDAQIACGVDILQKA 721
            RPLLVVEN     K       K     F  L++             D Q A G+  L ++
Sbjct: 690  RPLLVVENLNKIRKP------KGRSFSFQELMQQEIIEFIGVEEEEDIQCAWGIRHLFES 743

Query: 722  SITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKV 901
               +G    +THCELDPSFL+ L+  +IPFAN N A R LYQSEKHS+QAIG+ TT+  +
Sbjct: 744  ---EGAISSYTHCELDPSFLMGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHI 800

Query: 902  RSDTSGHELLYPQKPLFRTLSYQCL--------------SKPQLYNGQNAIVAVNVHYGY 1039
            R DT  H+L YPQ+PLF+T+   CL              ++P+ +NGQNAIVAVNVH G+
Sbjct: 801  RVDTLSHQLYYPQRPLFKTVIADCLGRSDYTAFGRKDDYTRPEYFNGQNAIVAVNVHQGF 860

Query: 1040 NQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKL 1219
            NQEDSLV NRAS++RGMFR+ H R + ++ E  +       +  +DFGK      ++D L
Sbjct: 861  NQEDSLVMNRASLERGMFRTEHLRSYKTDVENKDGTKRLKLKEKIDFGKTESKRGRVDNL 920

Query: 1220 DDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKV 1399
            DDDGLP+I + L + D++IGKV     D   S+KLKHTEKG V +VL++ ND GK +A V
Sbjct: 921  DDDGLPYIGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVV 978

Query: 1400 RLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQL 1579
             LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT +GIVPD++INPHAFP+RQTPGQL
Sbjct: 979  TLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQL 1038

Query: 1580 FECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIF 1759
             E                TPF   +V+ + E+LHK GY +WG E + NGRTG  +Q  +F
Sbjct: 1039 LEAALGKGIACKGTMRYATPFTTASVDVIAEQLHKAGYSRWGAENVLNGRTGERMQSLVF 1098

Query: 1760 IGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSN 1939
            +GPTFYQRLIHM+EDK+K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHG+ +N
Sbjct: 1099 MGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAAN 1158

Query: 1940 LLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPHCNFCKTAKHVVKVNVPYAC 2104
            L ERLF LSDFS MHIC  C+ VA VV+ +      +RGP+C FCK+++++V++NVPY  
Sbjct: 1159 LHERLFMLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGA 1218

Query: 2105 KLLYQELFAMGICLKFETE 2161
            KLLYQELF+MGICLKF+TE
Sbjct: 1219 KLLYQELFSMGICLKFDTE 1237


>XP_002468227.1 hypothetical protein SORBIDRAFT_01g042100 [Sorghum bicolor]
            EER95225.1 hypothetical protein SORBI_001G448100 [Sorghum
            bicolor]
          Length = 1228

 Score =  803 bits (2073), Expect = 0.0
 Identities = 400/739 (54%), Positives = 513/739 (69%), Gaps = 19/739 (2%)
 Frame = +2

Query: 2    NGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYP 181
            NGL+RAFSTG+W HP   A +C+G+VA++++ NPLQ++S++R+ R  V YA K GDARYP
Sbjct: 500  NGLSRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDARYP 559

Query: 182  NPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDF 361
            NPSYWG++CF+STPDGENCGLVKNLAVT++VS    + PLIE     G+ KL+D+     
Sbjct: 560  NPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVVQ-PLIESFISCGMSKLNDIPTEHI 618

Query: 362  HSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEIKKDSQQKEIRIFCDAGRLL 541
              M K+F+NG  +G C +  S V ++R MRR   IDP VEIK+D   KE+R+F DAGR+L
Sbjct: 619  QRMDKIFLNGNWVGSCKDSASFVFRLRCMRRSSLIDPQVEIKRDKHHKEVRVFSDAGRIL 678

Query: 542  RPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXXXXXXXDAQIACGVDILQKA 721
            RPLLVVEN +   K       K     F  L++             D Q A G+  L ++
Sbjct: 679  RPLLVVENLKKIRKP------KGRSFSFQELMQQEIIEFIGVEEEEDIQCAWGIRHLFES 732

Query: 722  SITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKV 901
               +G    +THCELDPSFLL L+  +IPFAN N A R LYQSEKHS+QAIG+ TT+  +
Sbjct: 733  ---EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHI 789

Query: 902  RSDTSGHELLYPQKPLFRTLSYQCLSK--------------PQLYNGQNAIVAVNVHYGY 1039
            R DT  H+L YPQ+PLF+T+   CL +              P+ +NGQNAIVAVNVH G+
Sbjct: 790  RVDTLSHQLYYPQRPLFKTVIADCLGRSDYTTFGRKDDFMRPEYFNGQNAIVAVNVHQGF 849

Query: 1040 NQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKL 1219
            NQEDSLV NRAS++RGMFR+ H R + ++ E  +       +  +DFGK      ++D L
Sbjct: 850  NQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNL 909

Query: 1220 DDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKV 1399
            DDDGLP+I + L + D++IGKV     D   S+KLKHTEKG V +VL++ ND GK +A V
Sbjct: 910  DDDGLPYIGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVV 967

Query: 1400 RLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQL 1579
             LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT +GIVPD++INPHAFP+RQTPGQL
Sbjct: 968  TLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHKGIVPDIVINPHAFPTRQTPGQL 1027

Query: 1580 FECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIF 1759
             E                TPF   +V+ + E+LH+ GY +WG E + NGRTG  +Q  IF
Sbjct: 1028 LEAALGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRWGTENVLNGRTGERMQSLIF 1087

Query: 1760 IGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSN 1939
            +GPTFYQRLIHM+EDK+K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHG+ +N
Sbjct: 1088 MGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAAN 1147

Query: 1940 LLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPHCNFCKTAKHVVKVNVPYAC 2104
            L ERLF LSDFS MHIC  C+ VA VV+ +      +RGP+C FCK+++++V++NVPY  
Sbjct: 1148 LHERLFMLSDFSQMHICQTCERVANVVMRSVSGGKKIRGPYCGFCKSSENIVRINVPYGA 1207

Query: 2105 KLLYQELFAMGICLKFETE 2161
            KLLYQELF+MGICLKF+TE
Sbjct: 1208 KLLYQELFSMGICLKFDTE 1226


>XP_012703111.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Setaria italica] KQK99160.1 hypothetical protein
            SETIT_009201mg [Setaria italica]
          Length = 1234

 Score =  802 bits (2071), Expect = 0.0
 Identities = 399/738 (54%), Positives = 512/738 (69%), Gaps = 18/738 (2%)
 Frame = +2

Query: 2    NGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYP 181
            NGL RAFSTG+W HP     +C+G+VA++++ NPLQ++S++R+ R  V YA K GDARYP
Sbjct: 507  NGLNRAFSTGSWCHPYKKTERCSGIVATLRRTNPLQMISDLRKTRQRVAYAGKAGDARYP 566

Query: 182  NPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDF 361
            NPSYWG++CF+STPDGENCGLVKNLAVT++VS    E+PLIE     G+ KL+++   + 
Sbjct: 567  NPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRV-EQPLIESFISCGMSKLNEIPTENI 625

Query: 362  HSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEIKKDSQQKEIRIFCDAGRLL 541
              M K+F+NG  +G C +  S V ++R MRR   I P VEIK+D  QKE+R+F +AGR+L
Sbjct: 626  QRMDKIFLNGNWVGCCTDSASFVLRLRCMRRSSLIHPQVEIKRDKHQKEVRVFSEAGRIL 685

Query: 542  RPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXXXXXXXDAQIACGVDILQKA 721
            RPLLVVEN     K       K     F  L++             D Q A G+  L  +
Sbjct: 686  RPLLVVENLNKIRKP------KGRSYSFQELIQQEIIEFIGVEEEEDIQCAWGIRHLFGS 739

Query: 722  SITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKV 901
               +G    +THCELDPSFLL L+  +IPFAN N A R LYQSEKHS+QAIG+ TT+  +
Sbjct: 740  ---EGEISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHI 796

Query: 902  RSDTSGHELLYPQKPLFRTLSYQCL-------------SKPQLYNGQNAIVAVNVHYGYN 1042
            R DT  H+L YPQ+PLF+T+   CL             ++P+ +NGQNAIVAVNVH G+N
Sbjct: 797  RVDTLSHQLYYPQRPLFKTVIADCLGRSDYTIGRRDDFARPEYFNGQNAIVAVNVHQGFN 856

Query: 1043 QEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKLD 1222
            QEDSLV NRAS++RGMFR+ H R + ++ E  +       +  +DFGK      ++D LD
Sbjct: 857  QEDSLVMNRASLERGMFRTEHLRSYKADVENKDVTKRLKMKEKIDFGKMESKRGRVDNLD 916

Query: 1223 DDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVR 1402
            DDGLP+I + L + D++IGKV     D   S+KLKHTEKG V +VL++ ND GK +A V 
Sbjct: 917  DDGLPYIGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVVT 974

Query: 1403 LREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQLF 1582
            LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT+ GIVPD++INPHAFP+RQTPGQL 
Sbjct: 975  LRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTRDGIVPDIVINPHAFPTRQTPGQLL 1034

Query: 1583 ECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIFI 1762
            E                TPF   +V+ + E+LHK G+ +WG E + NGRTG  +Q  +F+
Sbjct: 1035 EAALGKGIALGGTMRYATPFTTASVDVIAEQLHKAGFSKWGAESVINGRTGERMQSMVFM 1094

Query: 1763 GPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNL 1942
            GPTFYQRLIHM+EDK+K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHGA +NL
Sbjct: 1095 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANL 1154

Query: 1943 LERLFYLSDFSTMHICSKCQMVAPVVLE-----NGVRGPHCNFCKTAKHVVKVNVPYACK 2107
             ERLF LSDFS MHIC KC+ VA V++        +RGP+C FCK+++++V++NVPY  K
Sbjct: 1155 HERLFMLSDFSQMHICQKCERVANVIMRCVPGGKKIRGPYCGFCKSSENIVRINVPYGAK 1214

Query: 2108 LLYQELFAMGICLKFETE 2161
            LLYQELF+MGICLKFETE
Sbjct: 1215 LLYQELFSMGICLKFETE 1232


>AAY45706.1 RNA polymerase IV second largest subunit, partial [Zea mays]
          Length = 1170

 Score =  799 bits (2064), Expect = 0.0
 Identities = 398/739 (53%), Positives = 510/739 (69%), Gaps = 19/739 (2%)
 Frame = +2

Query: 2    NGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYP 181
            NGL RAFSTG+W HP   A +C+G+VA++++ NPLQ++S++R+ R  V YA K GDARYP
Sbjct: 442  NGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDARYP 501

Query: 182  NPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDF 361
            NPSYWG++CF+STPDGENCGLVKNLAVT++VS    + PLIE     G+ KL+D+     
Sbjct: 502  NPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQ-PLIESFISCGMSKLNDIPTEHI 560

Query: 362  HSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEIKKDSQQKEIRIFCDAGRLL 541
              M K+F+NG  +G C N  S V ++R MRR   IDP VEIK+D    E+R+F DAGR+L
Sbjct: 561  QRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAGRIL 620

Query: 542  RPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXXXXXXXDAQIACGVDILQKA 721
            RPLLVVEN     K       K     F  L++             D Q A G+  L ++
Sbjct: 621  RPLLVVENLNKIRKP------KGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLFES 674

Query: 722  SITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKV 901
               +G    +THCELDPSFLL L+  +IPFAN N A R LYQSEKHS+QAIG+ TT+  +
Sbjct: 675  ---EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHI 731

Query: 902  RSDTSGHELLYPQKPLFRTLSYQCL--------------SKPQLYNGQNAIVAVNVHYGY 1039
            R DT  H+L YPQ+PLF+T+   CL              ++P+ +NGQNAIVAVNVH G+
Sbjct: 732  RVDTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGF 791

Query: 1040 NQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKL 1219
            NQEDSLV NRAS++RGMFR+ H R + ++ E  +       +  +DFGK      + D L
Sbjct: 792  NQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRXDNL 851

Query: 1220 DDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKV 1399
            DDDGLP++ + L + D++IGKV     D   S+KLKHTEKG V +VL++ ND GK +A V
Sbjct: 852  DDDGLPYVGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVV 909

Query: 1400 RLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQL 1579
             LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT +GIVPD++INPHAFP+RQTPGQL
Sbjct: 910  TLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQL 969

Query: 1580 FECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIF 1759
             E                TPF   +V+ + E+LH+ GY +WG E + NGRTG  +Q  +F
Sbjct: 970  LEAALGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRWGSENVLNGRTGERVQSLVF 1029

Query: 1760 IGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSN 1939
            +GPTFYQRLIHM+EDK+K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHG+ +N
Sbjct: 1030 MGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAAN 1089

Query: 1940 LLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPHCNFCKTAKHVVKVNVPYAC 2104
            L ERLF LSDFS MHIC  C+ VA VV+ +      +RGP+C FCK+++++V++NVPY  
Sbjct: 1090 LHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGA 1149

Query: 2105 KLLYQELFAMGICLKFETE 2161
            KLLYQELF+MGICLKFET+
Sbjct: 1150 KLLYQELFSMGICLKFETQ 1168


>XP_020112440.1 DNA-directed RNA polymerases IV and V subunit 2-like [Ananas comosus]
            XP_020112441.1 DNA-directed RNA polymerases IV and V
            subunit 2-like [Ananas comosus]
          Length = 1201

 Score =  800 bits (2066), Expect = 0.0
 Identities = 401/738 (54%), Positives = 512/738 (69%), Gaps = 18/738 (2%)
 Frame = +2

Query: 2    NGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYP 181
            NG+ RAFSTG W HP     + +G+VA++++ NPLQ++S++R+ R  V YA K GDARYP
Sbjct: 472  NGINRAFSTGAWCHPYKRTERISGIVATLRRTNPLQMMSDLRKTRQQVAYAGKAGDARYP 531

Query: 182  NPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDF 361
            NPSYWG++CF+STPDGENCGLVKNLAVT++VS    E P+++ L   G+ KLD+  LS  
Sbjct: 532  NPSYWGKLCFLSTPDGENCGLVKNLAVTAIVSSRIME-PILDKLVSCGMEKLDESPLSST 590

Query: 362  HSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEIKKDSQQKEIRIFCDAGRLL 541
              M KVF+NG+ +G+C +P S V+  R MRR + I   VEIK+D  QKE+RIF DAGR++
Sbjct: 591  TKMDKVFLNGDWIGVCADPSSFVESFRCMRRNKVIHAQVEIKRDKHQKEVRIFSDAGRIM 650

Query: 542  RPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXXXXXXXDAQIACGVDILQKA 721
            RPLLVV+N +      ++   K     F YL+              D Q A GV  L   
Sbjct: 651  RPLLVVDNLK------KIKNLKGGSYSFQYLMDQEIIELIGVEEEEDLQTAWGVRHLFVG 704

Query: 722  SITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKV 901
               + + P ++H EL+ SFL+ L+  +IPFAN N A R LYQSEKHS+QAIG  TT+  +
Sbjct: 705  DKGEPI-PKYSHSELELSFLMGLSCGIIPFANHNFARRVLYQSEKHSQQAIGFSTTNPNI 763

Query: 902  RSDTSGHELLYPQKPLFRTLSYQCL-------------SKPQLYNGQNAIVAVNVHYGYN 1042
            R DT  H+L YPQ+PLF+T+   CL             ++P+ +NGQNAIVAVNVH GYN
Sbjct: 764  RVDTLSHQLYYPQRPLFKTVIADCLGRTDYSPGRKDDVARPEYFNGQNAIVAVNVHQGYN 823

Query: 1043 QEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKLD 1222
            QEDSLV NR S++RGMFR+ H+R + +E E  +       +  +DFGK      ++D LD
Sbjct: 824  QEDSLVMNRTSLERGMFRTEHFRSYKAEVENKDFTNRLKPKDKVDFGKTQSKKGRVDSLD 883

Query: 1223 DDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVR 1402
            DDGLP+IS+ L SGD++IGKV     D   S+KLKHTEKG V +V+++ ND GK +A V 
Sbjct: 884  DDGLPYISASLQSGDIVIGKVAESGEDH--SIKLKHTEKGMVQKVILSANDEGKNFAVVT 941

Query: 1403 LREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQLF 1582
            LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT+QGIVPD++INPHAFP+RQTPGQL 
Sbjct: 942  LRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTRQGIVPDIVINPHAFPTRQTPGQLL 1001

Query: 1583 ECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIFI 1762
            E                TPF   +V+ +TE+LH+ GY +WG EK+ NGRTG  ++  IF+
Sbjct: 1002 EAALGKGIACGGSARYATPFTTPSVDVITEQLHRAGYSRWGSEKVLNGRTGEMMRSMIFM 1061

Query: 1763 GPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNL 1942
            GPTFYQRLIHMAEDK+K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHGA +NL
Sbjct: 1062 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANL 1121

Query: 1943 LERLFYLSDFSTMHICSKCQMVAPVVLE-----NGVRGPHCNFCKTAKHVVKVNVPYACK 2107
             ERLF LSDFS MHIC  C+  A V+L        +RGP C FC++A+++VK+NVPY  K
Sbjct: 1122 HERLFMLSDFSQMHICQTCKRAANVILRPVPGGKKIRGPFCGFCRSAENIVKINVPYGAK 1181

Query: 2108 LLYQELFAMGICLKFETE 2161
            LLYQELF+ GICLKFETE
Sbjct: 1182 LLYQELFSTGICLKFETE 1199


>NP_001177299.1 required to maintain repression 7 [Zea mays] XP_008666978.1
            PREDICTED: required to maintain repression7 isoform X1
            [Zea mays] ADB19857.1 required to maintain repression
            7/RNA polymerase D second largest subunit [Zea mays]
            ADI24118.1 RPD2/E2a [Zea mays] ONM13141.1 nuclear RNA
            polymerase D2/E2 [Zea mays] ONM13145.1 nuclear RNA
            polymerase D2/E2 [Zea mays] ONM13149.1 nuclear RNA
            polymerase D2/E2 [Zea mays] ONM13152.1 nuclear RNA
            polymerase D2/E2 [Zea mays] ONM13153.1 nuclear RNA
            polymerase D2/E2 [Zea mays]
          Length = 1229

 Score =  801 bits (2068), Expect = 0.0
 Identities = 398/739 (53%), Positives = 511/739 (69%), Gaps = 19/739 (2%)
 Frame = +2

Query: 2    NGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYP 181
            NGL RAFSTG+W HP   A +C+G+VA++++ NPLQ++S++R+ R  V YA K GDARYP
Sbjct: 501  NGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDARYP 560

Query: 182  NPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDF 361
            NPSYWG++CF+STPDGENCGLVKNLAVT++VS    + PLIE     G+ KL+D+     
Sbjct: 561  NPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQ-PLIESFISCGMSKLNDIPTEHI 619

Query: 362  HSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEIKKDSQQKEIRIFCDAGRLL 541
              M K+F+NG  +G C N  S V ++R MRR   IDP VEIK+D    E+R+F DAGR+L
Sbjct: 620  QRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAGRIL 679

Query: 542  RPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXXXXXXXDAQIACGVDILQKA 721
            RPLLVVEN     K       K     F  L++             D Q A G+  L ++
Sbjct: 680  RPLLVVENLNKIRKP------KGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLFES 733

Query: 722  SITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKV 901
               +G    +THCELDPSFLL L+  +IPFAN N A R LYQSEKHS+QAIG+ TT+  +
Sbjct: 734  ---EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHI 790

Query: 902  RSDTSGHELLYPQKPLFRTLSYQCL--------------SKPQLYNGQNAIVAVNVHYGY 1039
            R DT  H+L YPQ+PLF+T+   CL              ++P+ +NGQNAIVAVNVH G+
Sbjct: 791  RVDTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGF 850

Query: 1040 NQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNLKIDKL 1219
            NQEDSLV NRAS++RGMFR+ H R + ++ E  +       +  +DFGK      ++D L
Sbjct: 851  NQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNL 910

Query: 1220 DDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKV 1399
            DDDGLP++ + L + D++IGKV     D   S+KLKHTEKG V +VL++ ND GK +A V
Sbjct: 911  DDDGLPYVGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVV 968

Query: 1400 RLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQL 1579
             LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT +GIVPD++INPHAFP+RQTPGQL
Sbjct: 969  TLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQL 1028

Query: 1580 FECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIF 1759
             E                TPF   +V+ + E+LH+ GY +WG E + NGRTG  +Q  +F
Sbjct: 1029 LEAALGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRWGSENVLNGRTGERVQSLVF 1088

Query: 1760 IGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSN 1939
            +GPTFYQRLIHM+EDK+K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHG+ +N
Sbjct: 1089 MGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAAN 1148

Query: 1940 LLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPHCNFCKTAKHVVKVNVPYAC 2104
            L ERLF LSDFS MHIC  C+ VA VV+ +      +RGP+C FCK+++++V++NVPY  
Sbjct: 1149 LHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGA 1208

Query: 2105 KLLYQELFAMGICLKFETE 2161
            KLLYQELF+MGICLKFET+
Sbjct: 1209 KLLYQELFSMGICLKFETQ 1227