BLASTX nr result

ID: Ephedra29_contig00009173 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra29_contig00009173
         (351 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ABR16859.1 unknown [Picea sitchensis]                                  67   8e-11
NP_001319913.1 transcription initiation factor IIF subunit alpha...    62   6e-09
AAR28013.1 mutant TFIIF-alpha, partial [Arabidopsis thaliana]          62   6e-09
NP_001319914.1 transcription initiation factor IIF subunit alpha...    62   6e-09
KZV16118.1 transcription initiation factor IIF subunit alpha [Do...    60   3e-08
XP_006396740.1 hypothetical protein EUTSA_v10028564mg [Eutrema s...    60   3e-08
XP_018455547.1 PREDICTED: transcription initiation factor IIF su...    60   5e-08
XP_018453803.1 PREDICTED: transcription initiation factor IIF su...    60   5e-08
XP_002872663.1 mutant TFIIF-alpha [Arabidopsis lyrata subsp. lyr...    59   7e-08
KNA09631.1 hypothetical protein SOVF_151770 [Spinacia oleracea]        59   1e-07
ONK70150.1 uncharacterized protein A4U43_C05F30770 [Asparagus of...    58   2e-07
XP_019174246.1 PREDICTED: uncharacterized protein LOC109169788 i...    58   2e-07
XP_019174232.1 PREDICTED: uncharacterized protein LOC109169788 i...    58   2e-07
XP_010422237.1 PREDICTED: transcription initiation factor IIF su...    58   2e-07
XP_019084093.1 PREDICTED: transcription initiation factor IIF su...    58   2e-07
XP_013732691.1 PREDICTED: transcription initiation factor IIF su...    57   3e-07
XP_013676955.1 PREDICTED: transcription initiation factor IIF su...    57   3e-07
XP_013659195.1 PREDICTED: transcription initiation factor IIF su...    57   3e-07
XP_009114609.1 PREDICTED: transcription initiation factor IIF su...    57   3e-07
XP_013609275.1 PREDICTED: transcription initiation factor IIF su...    57   3e-07

>ABR16859.1 unknown [Picea sitchensis]
          Length = 366

 Score = 67.4 bits (163), Expect = 8e-11
 Identities = 34/102 (33%), Positives = 56/102 (54%)
 Frame = -1

Query: 315 KDAECQDCHSKKDLYASVCTHMDPLCLKCARKYADESSACSECNEPITQVIRRFRVKRTS 136
           ++A+C  C +KKDLYAS C H+DP+C+ CA   A + + C  C + +T+V RR+ +K   
Sbjct: 6   ENAKCMKCEAKKDLYASQCKHLDPICITCATVMAKDKTPCPTCLQLVTKVFRRYDLKSYL 65

Query: 135 QKGWSGFVGILPPEQQEDASEDPDMSDVNQQKLSFFPETDNQ 10
               + F+    P+     S   D+  V++Q  +    TDN+
Sbjct: 66  PGNATKFLAKFSPK----PSGSVDIVGVDKQPAAGKNTTDNK 103


>NP_001319913.1 transcription initiation factor IIF subunit alpha RAP74
           [Arabidopsis thaliana] OAP00193.1 hypothetical protein
           AXX17_AT4G14230 [Arabidopsis thaliana] AEE83155.2
           transcription initiation factor IIF subunit alpha RAP74
           [Arabidopsis thaliana]
          Length = 543

 Score = 62.4 bits (150), Expect = 6e-09
 Identities = 28/72 (38%), Positives = 39/72 (54%)
 Frame = -1

Query: 324 CMNKDAECQDCHSKKDLYASVCTHMDPLCLKCARKYADESSACSECNEPITQVIRRFRVK 145
           C+  +  C  C S+ DLY S C HM  LCLKC R  A   S C EC   +T++IR + V+
Sbjct: 4   CLQLNTSCVGCGSQSDLYGSSCRHMT-LCLKCGRTMAQNKSKCHECGTVVTRLIREYNVR 62

Query: 144 RTSQKGWSGFVG 109
             +    + F+G
Sbjct: 63  AAAPTDKNYFIG 74


>AAR28013.1 mutant TFIIF-alpha, partial [Arabidopsis thaliana]
          Length = 640

 Score = 62.4 bits (150), Expect = 6e-09
 Identities = 28/72 (38%), Positives = 39/72 (54%)
 Frame = -1

Query: 324 CMNKDAECQDCHSKKDLYASVCTHMDPLCLKCARKYADESSACSECNEPITQVIRRFRVK 145
           C+  +  C  C S+ DLY S C HM  LCLKC R  A   S C EC   +T++IR + V+
Sbjct: 4   CLQLNTSCVGCGSQSDLYGSSCRHMT-LCLKCGRTMAQNKSKCHECGTVVTRLIREYNVR 62

Query: 144 RTSQKGWSGFVG 109
             +    + F+G
Sbjct: 63  AAAPTDKNYFIG 74


>NP_001319914.1 transcription initiation factor IIF subunit alpha RAP74
           [Arabidopsis thaliana] Q9SU25.1 RecName:
           Full=Transcription initiation factor IIF subunit alpha;
           Short=TFIIF-alpha; AltName: Full=General transcription
           factor IIF subunit 1; AltName: Full=Transcription
           initiation factor RAP74 homolog; Short=AtRAP74
           CAB53754.1 putative protein [Arabidopsis thaliana]
           CAB78304.1 putative protein [Arabidopsis thaliana]
           AEE83156.2 transcription initiation factor IIF subunit
           alpha RAP74 [Arabidopsis thaliana]
          Length = 649

 Score = 62.4 bits (150), Expect = 6e-09
 Identities = 28/72 (38%), Positives = 39/72 (54%)
 Frame = -1

Query: 324 CMNKDAECQDCHSKKDLYASVCTHMDPLCLKCARKYADESSACSECNEPITQVIRRFRVK 145
           C+  +  C  C S+ DLY S C HM  LCLKC R  A   S C EC   +T++IR + V+
Sbjct: 4   CLQLNTSCVGCGSQSDLYGSSCRHMT-LCLKCGRTMAQNKSKCHECGTVVTRLIREYNVR 62

Query: 144 RTSQKGWSGFVG 109
             +    + F+G
Sbjct: 63  AAAPTDKNYFIG 74


>KZV16118.1 transcription initiation factor IIF subunit alpha [Dorcoceras
           hygrometricum]
          Length = 537

 Score = 60.5 bits (145), Expect = 3e-08
 Identities = 27/68 (39%), Positives = 38/68 (55%)
 Frame = -1

Query: 303 CQDCHSKKDLYASVCTHMDPLCLKCARKYADESSACSECNEPITQVIRRFRVKRTSQKGW 124
           C  C S  DLY S C H+  LCL C +  A+  + C EC  PIT++IR + V+ +S    
Sbjct: 11  CGGCGSTVDLYGSTCKHLT-LCLTCGKTMAENRAKCYECGTPITRLIREYNVRASSSSNK 69

Query: 123 SGFVGILP 100
           + F+G  P
Sbjct: 70  NHFIGRFP 77


>XP_006396740.1 hypothetical protein EUTSA_v10028564mg [Eutrema salsugineum]
           ESQ38193.1 hypothetical protein EUTSA_v10028564mg
           [Eutrema salsugineum]
          Length = 542

 Score = 60.5 bits (145), Expect = 3e-08
 Identities = 27/75 (36%), Positives = 40/75 (53%)
 Frame = -1

Query: 333 SLKCMNKDAECQDCHSKKDLYASVCTHMDPLCLKCARKYADESSACSECNEPITQVIRRF 154
           S  C+   +EC  C S  DLY S C HM  LC KC +  A+  S C +C   +T++IR +
Sbjct: 2   SSHCLTLKSECMRCKSPSDLYGSSCRHMT-LCFKCGKTMAENKSKCIDCGTIVTRLIREY 60

Query: 153 RVKRTSQKGWSGFVG 109
            V+  +    + F+G
Sbjct: 61  NVRAAAPTDKNYFIG 75


>XP_018455547.1 PREDICTED: transcription initiation factor IIF subunit alpha-like
           [Raphanus sativus]
          Length = 519

 Score = 59.7 bits (143), Expect = 5e-08
 Identities = 26/72 (36%), Positives = 39/72 (54%)
 Frame = -1

Query: 324 CMNKDAECQDCHSKKDLYASVCTHMDPLCLKCARKYADESSACSECNEPITQVIRRFRVK 145
           C+     C  C SK DLY S C HM  LCLKC +  A+  + C +C   +T++IR + V+
Sbjct: 4   CLTLKPACMGCGSKSDLYGSSCRHMT-LCLKCGKTMAENKAKCLDCGTVLTRLIREYNVR 62

Query: 144 RTSQKGWSGFVG 109
             +    + F+G
Sbjct: 63  AATPTDKNYFIG 74


>XP_018453803.1 PREDICTED: transcription initiation factor IIF subunit alpha-like
           [Raphanus sativus]
          Length = 523

 Score = 59.7 bits (143), Expect = 5e-08
 Identities = 26/72 (36%), Positives = 39/72 (54%)
 Frame = -1

Query: 324 CMNKDAECQDCHSKKDLYASVCTHMDPLCLKCARKYADESSACSECNEPITQVIRRFRVK 145
           C+     C  C SK DLY S C HM  LCLKC +  A+  + C +C   +T++IR + V+
Sbjct: 4   CLTLKPACMGCGSKSDLYGSSCRHMT-LCLKCGKTMAENKAKCLDCGTVLTRLIREYNVR 62

Query: 144 RTSQKGWSGFVG 109
             +    + F+G
Sbjct: 63  AATPTDKNYFIG 74


>XP_002872663.1 mutant TFIIF-alpha [Arabidopsis lyrata subsp. lyrata] EFH48922.1
           mutant TFIIF-alpha [Arabidopsis lyrata subsp. lyrata]
          Length = 619

 Score = 59.3 bits (142), Expect = 7e-08
 Identities = 26/72 (36%), Positives = 39/72 (54%)
 Frame = -1

Query: 324 CMNKDAECQDCHSKKDLYASVCTHMDPLCLKCARKYADESSACSECNEPITQVIRRFRVK 145
           C+     C  C S+ DLY S C HM  LCLKC R  A+  + C +C   +T++IR + V+
Sbjct: 4   CLQLKPACMGCGSQSDLYGSSCRHMT-LCLKCGRTMAENKAKCLDCGTVLTRLIREYNVR 62

Query: 144 RTSQKGWSGFVG 109
             +    + F+G
Sbjct: 63  AAAPTDKNYFIG 74


>KNA09631.1 hypothetical protein SOVF_151770 [Spinacia oleracea]
          Length = 541

 Score = 58.5 bits (140), Expect = 1e-07
 Identities = 26/68 (38%), Positives = 38/68 (55%)
 Frame = -1

Query: 303 CQDCHSKKDLYASVCTHMDPLCLKCARKYADESSACSECNEPITQVIRRFRVKRTSQKGW 124
           C  C S  DLY S C H+  LCL C +  A+  + C EC  P+T++IR + V+ +S    
Sbjct: 11  CGRCGSNNDLYGSNCKHLT-LCLSCGKNMAENRAKCFECGTPVTRLIREYNVRTSSSIDK 69

Query: 123 SGFVGILP 100
           + F+G  P
Sbjct: 70  NYFIGRFP 77


>ONK70150.1 uncharacterized protein A4U43_C05F30770 [Asparagus officinalis]
          Length = 533

 Score = 57.8 bits (138), Expect = 2e-07
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
 Frame = -1

Query: 339 MSSLKCMNKDAECQDCHSKKDLYASVCTHMDPLCLKCARKYADESSACSECNEPITQVIR 160
           MSS   + K A C+ C S  DLY S C H   LC  C ++ A+  + C+ C  PIT++IR
Sbjct: 3   MSSFDLILKPA-CEGCGSPSDLYGSNCKHKT-LCASCGKRMAESRARCNICGIPITKLIR 60

Query: 159 RFRVKRTSQKGWSGFVGI----LPPEQQEDASED 70
            + V+ ++    S F+G     LPP  ++  +E+
Sbjct: 61  EYNVRASASTDKSYFIGRFVTGLPPFSKKKYAEN 94


>XP_019174246.1 PREDICTED: uncharacterized protein LOC109169788 isoform X3 [Ipomoea
           nil]
          Length = 535

 Score = 57.8 bits (138), Expect = 2e-07
 Identities = 24/68 (35%), Positives = 37/68 (54%)
 Frame = -1

Query: 303 CQDCHSKKDLYASVCTHMDPLCLKCARKYADESSACSECNEPITQVIRRFRVKRTSQKGW 124
           C  C S  +LY S C H+  LC+ C +  A+    C++C  PIT++IR + V+  S    
Sbjct: 11  CSGCGSSSELYGSACKHLT-LCVSCGKTMAENHGTCNKCGAPITRLIREYNVRACSTNDK 69

Query: 123 SGFVGILP 100
           + F+G  P
Sbjct: 70  NYFIGRFP 77


>XP_019174232.1 PREDICTED: uncharacterized protein LOC109169788 isoform X2 [Ipomoea
           nil] XP_019174239.1 PREDICTED: uncharacterized protein
           LOC109169788 isoform X2 [Ipomoea nil]
          Length = 538

 Score = 57.8 bits (138), Expect = 2e-07
 Identities = 24/68 (35%), Positives = 37/68 (54%)
 Frame = -1

Query: 303 CQDCHSKKDLYASVCTHMDPLCLKCARKYADESSACSECNEPITQVIRRFRVKRTSQKGW 124
           C  C S  +LY S C H+  LC+ C +  A+    C++C  PIT++IR + V+  S    
Sbjct: 11  CSGCGSSSELYGSACKHLT-LCVSCGKTMAENHGTCNKCGAPITRLIREYNVRACSTNDK 69

Query: 123 SGFVGILP 100
           + F+G  P
Sbjct: 70  NYFIGRFP 77


>XP_010422237.1 PREDICTED: transcription initiation factor IIF subunit alpha-like
           isoform X2 [Camelina sativa]
          Length = 540

 Score = 57.8 bits (138), Expect = 2e-07
 Identities = 25/72 (34%), Positives = 39/72 (54%)
 Frame = -1

Query: 324 CMNKDAECQDCHSKKDLYASVCTHMDPLCLKCARKYADESSACSECNEPITQVIRRFRVK 145
           C+     C  C S+ DLY S C HM  LCLKC +  A+  + C +C   +T++IR + V+
Sbjct: 4   CLQLKPACIGCQSQSDLYGSSCRHMT-LCLKCGKTMAENKAKCLDCGTVLTRLIREYNVR 62

Query: 144 RTSQKGWSGFVG 109
             +    + F+G
Sbjct: 63  AAAPTDKNYFIG 74


>XP_019084093.1 PREDICTED: transcription initiation factor IIF subunit alpha-like
           isoform X1 [Camelina sativa]
          Length = 541

 Score = 57.8 bits (138), Expect = 2e-07
 Identities = 25/72 (34%), Positives = 39/72 (54%)
 Frame = -1

Query: 324 CMNKDAECQDCHSKKDLYASVCTHMDPLCLKCARKYADESSACSECNEPITQVIRRFRVK 145
           C+     C  C S+ DLY S C HM  LCLKC +  A+  + C +C   +T++IR + V+
Sbjct: 4   CLQLKPACIGCQSQSDLYGSSCRHMT-LCLKCGKTMAENKAKCLDCGTVLTRLIREYNVR 62

Query: 144 RTSQKGWSGFVG 109
             +    + F+G
Sbjct: 63  AAAPTDKNYFIG 74


>XP_013732691.1 PREDICTED: transcription initiation factor IIF subunit alpha-like
           [Brassica napus]
          Length = 336

 Score = 57.4 bits (137), Expect = 3e-07
 Identities = 25/72 (34%), Positives = 39/72 (54%)
 Frame = -1

Query: 324 CMNKDAECQDCHSKKDLYASVCTHMDPLCLKCARKYADESSACSECNEPITQVIRRFRVK 145
           C+     C  C S+ DLY S C HM  LCLKC +  A+  + C +C   +T++IR + V+
Sbjct: 4   CLVLKPSCMGCGSQSDLYGSSCRHMT-LCLKCGKTMAENKAKCLDCGTVLTRLIREYNVR 62

Query: 144 RTSQKGWSGFVG 109
             +    + F+G
Sbjct: 63  AATPTDKNYFIG 74


>XP_013676955.1 PREDICTED: transcription initiation factor IIF subunit alpha-like
           isoform X1 [Brassica napus] XP_013676956.1 PREDICTED:
           transcription initiation factor IIF subunit alpha-like
           isoform X2 [Brassica napus]
          Length = 504

 Score = 57.4 bits (137), Expect = 3e-07
 Identities = 25/72 (34%), Positives = 39/72 (54%)
 Frame = -1

Query: 324 CMNKDAECQDCHSKKDLYASVCTHMDPLCLKCARKYADESSACSECNEPITQVIRRFRVK 145
           C+     C  C S+ DLY S C HM  LCLKC +  A+  + C +C   +T++IR + V+
Sbjct: 4   CLILKPACMGCGSRSDLYGSSCRHMT-LCLKCGKTMAENKAKCLDCGTVLTRLIREYNVR 62

Query: 144 RTSQKGWSGFVG 109
             +    + F+G
Sbjct: 63  AATPTDKNYFIG 74


>XP_013659195.1 PREDICTED: transcription initiation factor IIF subunit alpha-like
           [Brassica napus]
          Length = 507

 Score = 57.4 bits (137), Expect = 3e-07
 Identities = 25/72 (34%), Positives = 39/72 (54%)
 Frame = -1

Query: 324 CMNKDAECQDCHSKKDLYASVCTHMDPLCLKCARKYADESSACSECNEPITQVIRRFRVK 145
           C+     C  C S+ DLY S C HM  LCLKC +  A+  + C +C   +T++IR + V+
Sbjct: 4   CLVLKPACMGCGSRSDLYGSSCRHMT-LCLKCGKTMAENKAKCLDCGTVLTRLIREYNVR 62

Query: 144 RTSQKGWSGFVG 109
             +    + F+G
Sbjct: 63  AATPTDKNYFIG 74


>XP_009114609.1 PREDICTED: transcription initiation factor IIF subunit alpha
           [Brassica rapa]
          Length = 507

 Score = 57.4 bits (137), Expect = 3e-07
 Identities = 25/72 (34%), Positives = 39/72 (54%)
 Frame = -1

Query: 324 CMNKDAECQDCHSKKDLYASVCTHMDPLCLKCARKYADESSACSECNEPITQVIRRFRVK 145
           C+     C  C S+ DLY S C HM  LCLKC +  A+  + C +C   +T++IR + V+
Sbjct: 4   CLVLKPACMGCGSRSDLYGSSCRHMT-LCLKCGKTMAENKAKCLDCGTVLTRLIREYNVR 62

Query: 144 RTSQKGWSGFVG 109
             +    + F+G
Sbjct: 63  AATPTDKNYFIG 74


>XP_013609275.1 PREDICTED: transcription initiation factor IIF subunit alpha
           [Brassica oleracea var. oleracea]
          Length = 510

 Score = 57.4 bits (137), Expect = 3e-07
 Identities = 25/72 (34%), Positives = 39/72 (54%)
 Frame = -1

Query: 324 CMNKDAECQDCHSKKDLYASVCTHMDPLCLKCARKYADESSACSECNEPITQVIRRFRVK 145
           C+     C  C S+ DLY S C HM  LCLKC +  A+  + C +C   +T++IR + V+
Sbjct: 4   CLILKPACMGCGSRSDLYGSSCRHMT-LCLKCGKTMAENKAKCLDCGTVLTRLIREYNVR 62

Query: 144 RTSQKGWSGFVG 109
             +    + F+G
Sbjct: 63  AATPTDKNYFIG 74


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