BLASTX nr result
ID: Ephedra29_contig00007536
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra29_contig00007536
(1774 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJP06347.1 RDR6 [Pinus tabuliformis] 700 0.0
XP_006842072.1 PREDICTED: RNA-dependent RNA polymerase 6 [Ambore... 602 0.0
XP_006842073.1 PREDICTED: RNA-dependent RNA polymerase 6 [Ambore... 600 0.0
XP_018847783.1 PREDICTED: RNA-dependent RNA polymerase 6-like [J... 586 0.0
XP_018678117.1 PREDICTED: LOW QUALITY PROTEIN: probable RNA-depe... 593 0.0
XP_011459183.1 PREDICTED: RNA-dependent RNA polymerase 6 isoform... 593 0.0
XP_004291459.2 PREDICTED: RNA-dependent RNA polymerase 6 isoform... 593 0.0
KQK20564.1 hypothetical protein BRADI_1g55350 [Brachypodium dist... 577 0.0
XP_010696115.1 PREDICTED: RNA-dependent RNA polymerase 6 [Beta v... 584 0.0
XP_018822243.1 PREDICTED: RNA-dependent RNA polymerase 6 [Juglan... 584 0.0
XP_019173988.1 PREDICTED: RNA-dependent RNA polymerase 6 [Ipomoe... 583 0.0
XP_002324295.1 SILENCING DEFECTIVE 1 family protein [Populus tri... 583 0.0
XP_011026450.1 PREDICTED: RNA-dependent RNA polymerase 6-like [P... 582 0.0
XP_009616479.1 PREDICTED: RNA-dependent RNA polymerase 6, partia... 573 0.0
XP_006645957.1 PREDICTED: probable RNA-dependent RNA polymerase ... 576 0.0
CAR47810.1 RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 578 0.0
AAU21242.1 putative RNA-dependent RNA polymerase SDE1 [Nicotiana... 578 0.0
XP_019260524.1 PREDICTED: RNA-dependent RNA polymerase 6 [Nicoti... 578 0.0
XP_009758053.1 PREDICTED: RNA-dependent RNA polymerase 6 [Nicoti... 578 0.0
ACA13601.1 RNA-dependent RNA polymerase [Nicotiana attenuata] 578 0.0
>AJP06347.1 RDR6 [Pinus tabuliformis]
Length = 1189
Score = 700 bits (1806), Expect = 0.0
Identities = 353/623 (56%), Positives = 442/623 (70%), Gaps = 32/623 (5%)
Frame = -2
Query: 1773 LSPRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTIPNQKWIR 1597
LS R G+TME+A YF + LL E +L+V E V V R + FFT+P++ I
Sbjct: 262 LSLRMGYTMEKAMDYFRQNRLLDEKSP---SRNLKVNQEPDVYVSRRVFFFTLPHRPRIH 318
Query: 1596 FESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSYGNQIYDPCVEL 1417
FE+ +LLN L+HKGI+NYH + FY ML P+ TP S +ALRHM +Y N ++D
Sbjct: 319 FETMFLLNALVHKGIVNYHRITPEFYNMLKPSVTPAKLSILALRHMLAYTNPVFDAFGRF 378
Query: 1416 GRIL----QQYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRVLRRYRSVSDRF 1249
+L + + LK P I +T+EVRRL+ITPTKAYC PPE+ELSNRVLR ++ +DRF
Sbjct: 379 KAVLSWISKNLKLLKNPKIAEETIEVRRLVITPTKAYCLPPEVELSNRVLRHFKKFADRF 438
Query: 1248 LRVCFLDESMDKLGSGALSVNVAPVAKEGFNDFSANX----------------------- 1138
LRV F+D++M + S L+V +AP+ KE + +A
Sbjct: 439 LRVTFMDDNMQAMSSIVLTVPIAPIVKEVSSGSTAYRTAIFKRVKQILHKGFQLCGRYYL 498
Query: 1137 ----SPNQLRDNSAWFFADGDSITANDIRSWMGKFHKITNVAKHAARMGQCFSSTYSTVD 970
S NQLRD SAWFFA G+ IT I+ WMG F K NVAKHAARMGQCFSSTY TV+
Sbjct: 499 FLAFSANQLRDRSAWFFASGEDITVQQIKKWMGNFPKY-NVAKHAARMGQCFSSTYCTVE 557
Query: 969 VGRMQFREIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAFQIRFGGYKGVVS 790
V Q ++ DI+R GY FSDGIGKI+P LA EV + LQLN NPPSAFQIR+GGYKGVV+
Sbjct: 558 VPSKQVEDLPDIKRKGYDFSDGIGKITPVLAREVAQMLQLNFNPPSAFQIRYGGYKGVVA 617
Query: 789 TWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITLLSALGVKDKVFR 610
TW E G +KL LRPSM KF+ +H LEII+WTRFLP +LN++IITLLS+L V D F+
Sbjct: 618 TWAAESGCKFKLSLRPSMKKFESEHTMLEIITWTRFLPCFLNKQIITLLSSLLVPDSAFQ 677
Query: 609 DLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKKEPHLKDLLTAIR 430
+LQ SMV +L +MLE EVAFD+LT+SC+G L NTAA+M+ AGFT + EPHLKD+L+ IR
Sbjct: 678 NLQYSMVEKLSQMLENVEVAFDVLTTSCTGDLQNTAAIMLSAGFTSQSEPHLKDMLSCIR 737
Query: 429 AVQLDDLLRKNRIFVPKGRWLIGCLDEVGKLEYGKCFIRASTTSLKDCFVKHGCTFDEQS 250
AVQL++LL K RIFVP+GRWL+GCLDE+G+LEYG+CFI+ S L+ CF+KHG + E+
Sbjct: 738 AVQLEELLTKCRIFVPQGRWLMGCLDEIGELEYGQCFIKVSGPPLEGCFLKHGSSSGERK 797
Query: 249 NDPTVVTGKVIIAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGSRPHPNEASGSDL 70
T+V GKV++AKNPCLHPGD+RILEAVD P L+H+VDCLVFPQ G RPHPNEASGSDL
Sbjct: 798 TSSTIVRGKVVVAKNPCLHPGDVRILEAVDAPSLHHLVDCLVFPQNGHRPHPNEASGSDL 857
Query: 69 DGDTYFVSWEPSLIPPRGESWDP 1
D D YFVSW+ SL+PP GESW+P
Sbjct: 858 DDDIYFVSWDSSLVPPSGESWEP 880
>XP_006842072.1 PREDICTED: RNA-dependent RNA polymerase 6 [Amborella trichopoda]
ERN03747.1 hypothetical protein AMTR_s00078p00055040
[Amborella trichopoda]
Length = 1207
Score = 602 bits (1553), Expect = 0.0
Identities = 321/625 (51%), Positives = 424/625 (67%), Gaps = 37/625 (5%)
Frame = -2
Query: 1770 SPRTGHTMEQAKRYFSRYHLLGETV-ERVF---DSSLRVRPE-GHVVPRGLLFFTIPNQK 1606
SPR G ME+A+ YF +L V ++V D +V E G + P FF++ Q+
Sbjct: 276 SPRYGLKMEKARDYFRECRILEHGVLQKVLGPQDYPPKVSTEPGFMKPMRNHFFSVNIQE 335
Query: 1605 WIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSYGNQIYDPC 1426
+ FE YL+ L+HKGI+N H L F+ +L S + +T ALRHM+S ++D
Sbjct: 336 GLSFEVVYLVTCLVHKGIINQHRLCKEFFDLLRSQSPEV--NTAALRHMYSCHRPVFDAY 393
Query: 1425 VELGRI----LQQYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRVLRRYRSVS 1258
EL + L+ R +K I D++EVRRL+ITPT A C PP++ELSNRVLR YR +S
Sbjct: 394 KELKTVQEWLLKNPRLVKETHIPEDSVEVRRLMITPTGAQCLPPQVELSNRVLRNYREIS 453
Query: 1257 DRFLRVCFLDESMDKLGSGALSVNVAPVAKE----------------------GFNDFSA 1144
DRF+RV F DE + L SG LS+ AP+ K+ GFN
Sbjct: 454 DRFIRVTFTDEGLQTLNSGVLSIYTAPIVKDFSHSKTAQKTAIFRRVRSIAFDGFNLCGR 513
Query: 1143 NX-----SPNQLRDNSAWFFADGDSITANDIRSWMGKFHKITNVAKHAARMGQCFSSTYS 979
S NQLRD SAWFFAD + TA+ IRSWMGKF NVAK AARMG CFSSTY+
Sbjct: 514 RYLFLAFSSNQLRDRSAWFFADTEKTTADSIRSWMGKFTD-ENVAKCAARMGMCFSSTYA 572
Query: 978 TVDVGRMQFR-EIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAFQIRFGGYK 802
TV+ + ++ +I+RNGY FSDGIGKI+P+LA +V +L+L+ NPP A+Q+R+ G K
Sbjct: 573 TVEFDQKDVNFKLAEIKRNGYVFSDGIGKITPELATQVASKLKLSENPPCAYQVRYAGCK 632
Query: 801 GVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITLLSALGVKD 622
GV+ TWP + KL +RPSM KF+ H LE+I+WTRF P YLNR+IITLLS L V +
Sbjct: 633 GVIVTWPRDG--KAKLSIRPSMFKFESKHTMLEVITWTRFQPGYLNRQIITLLSTLKVPN 690
Query: 621 KVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKKEPHLKDLL 442
+ F +LQ+SMVS L ++L EVA ++T+SC G NTAA+M+ AGFTP+ EPHL+++L
Sbjct: 691 EAFLELQDSMVSDLSQILVNGEVAHKVVTNSC-GEQANTAAIMLSAGFTPQTEPHLREML 749
Query: 441 TAIRAVQLDDLLRKNRIFVPKGRWLIGCLDEVGKLEYGKCFIRASTTSLKDCFVKHGCTF 262
+ IRA QL DLL K RIF P GRWL+GCLDE+G+LE+G+CFI+ S+ SL++CF+KHG +F
Sbjct: 750 SCIRAAQLGDLLAKARIFNPDGRWLMGCLDELGELEHGQCFIQVSSPSLENCFIKHGKSF 809
Query: 261 DEQSNDPTVVTGKVIIAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGSRPHPNEAS 82
++ ++ V+TG V++AKNPCLHPG+IR+LEAVD+P L+H+VDCLVFPQKG RPH NEAS
Sbjct: 810 SKRKHNVKVITGTVVVAKNPCLHPGEIRVLEAVDVPGLHHLVDCLVFPQKGDRPHTNEAS 869
Query: 81 GSDLDGDTYFVSWEPSLIPPRGESW 7
GSDLDGDTYFV+W +L+PP G+SW
Sbjct: 870 GSDLDGDTYFVTWNETLVPPSGKSW 894
>XP_006842073.1 PREDICTED: RNA-dependent RNA polymerase 6 [Amborella trichopoda]
ERN03748.1 hypothetical protein AMTR_s00078p00056260
[Amborella trichopoda]
Length = 1207
Score = 600 bits (1546), Expect = 0.0
Identities = 322/626 (51%), Positives = 422/626 (67%), Gaps = 38/626 (6%)
Frame = -2
Query: 1770 SPRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPE-----GHVVPRGLLFFTIPNQK 1606
SPR G E+A+ YF +L V + SL P+ G + FF++ Q+
Sbjct: 276 SPRHGLIREKARDYFRECRILEHEVLQKDLGSLGYPPKVTTEHGFMEQMRDHFFSVNIQQ 335
Query: 1605 WIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSYGNQIYDPC 1426
+ FE YL+ L+HKGI+N H L F+ +L S+ + +T ALRHM+S ++D
Sbjct: 336 GLCFEIVYLVTCLVHKGIINQHRLCKEFFDLLRSQSSEV--NTAALRHMYSCRRPVFDAY 393
Query: 1425 VELGRI----LQQYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRVLRRYRSVS 1258
+L + L+ R LK I +++EVRRL+ITPT A C PP++ELSNRVLR YR +S
Sbjct: 394 RKLETVHEWLLKNPRLLKETHIPEESVEVRRLMITPTGAQCLPPQVELSNRVLRNYREIS 453
Query: 1257 DRFLRVCFLDESMDKLGSGALSVNVAPVAKE----------------------GFN---- 1156
DRF+RV F DE + L SG LS+ AP+ K+ GFN
Sbjct: 454 DRFIRVTFTDEGLQTLNSGVLSIYTAPIVKDFSHIKPSQKTTIFRRVRSIAFDGFNLCGR 513
Query: 1155 --DFSANXSPNQLRDNSAWFFADGDSITANDIRSWMGKFHKITNVAKHAARMGQCFSSTY 982
F A S NQLRD SAWFFAD + TA+ IRSWMGKF NVAK AARMG CFSSTY
Sbjct: 514 RYSFLA-FSSNQLRDRSAWFFADTEKTTADSIRSWMGKFTD-KNVAKCAARMGMCFSSTY 571
Query: 981 STVDVGRMQFR-EIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAFQIRFGGY 805
+TV+V + ++ +IERNGY FSDGIGKI+P+LA +V +L+L+ NPP A+Q+R+ G
Sbjct: 572 ATVEVDQKDVNFKLAEIERNGYVFSDGIGKITPELATQVASKLKLSENPPCAYQVRYAGC 631
Query: 804 KGVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITLLSALGVK 625
KGV+ TWP + KL +RPSM KF H LE+I+WTRF P YLNR+IITLLS L V
Sbjct: 632 KGVIVTWPGDG--KAKLSIRPSMVKFQSKHSILEVITWTRFQPGYLNRQIITLLSTLKVP 689
Query: 624 DKVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKKEPHLKDL 445
++ F +LQ+SMVS L ++L EVA ++T+SC G NTAA+M+ AGFTP+ EPHL+++
Sbjct: 690 NEAFLELQDSMVSDLSQILVNTEVAHKVVTNSC-GEQANTAAIMLSAGFTPQTEPHLREM 748
Query: 444 LTAIRAVQLDDLLRKNRIFVPKGRWLIGCLDEVGKLEYGKCFIRASTTSLKDCFVKHGCT 265
L+ IRA QL DLL K RIF P GRWL+GCLDE+G+LE+G+CFI+ S+ SL++CF+KHG +
Sbjct: 749 LSCIRAAQLGDLLAKARIFNPDGRWLMGCLDELGELEHGQCFIQVSSPSLENCFIKHGKS 808
Query: 264 FDEQSNDPTVVTGKVIIAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGSRPHPNEA 85
F ++ ++ V+TG V+IAKNPCLHPG+IR+LEAVD+P L+H+VDCLVFPQKG RPH NEA
Sbjct: 809 FSKRKHNVKVITGTVVIAKNPCLHPGEIRVLEAVDVPGLHHLVDCLVFPQKGDRPHTNEA 868
Query: 84 SGSDLDGDTYFVSWEPSLIPPRGESW 7
SGSDLDGDTYFV+W L+PP G+SW
Sbjct: 869 SGSDLDGDTYFVTWNEKLVPPSGKSW 894
>XP_018847783.1 PREDICTED: RNA-dependent RNA polymerase 6-like [Juglans regia]
XP_018847785.1 PREDICTED: RNA-dependent RNA polymerase
6-like [Juglans regia] XP_018847786.1 PREDICTED:
RNA-dependent RNA polymerase 6-like [Juglans regia]
XP_018847787.1 PREDICTED: RNA-dependent RNA polymerase
6-like [Juglans regia] XP_018847788.1 PREDICTED:
RNA-dependent RNA polymerase 6-like [Juglans regia]
Length = 931
Score = 586 bits (1511), Expect = 0.0
Identities = 316/625 (50%), Positives = 410/625 (65%), Gaps = 34/625 (5%)
Frame = -2
Query: 1773 LSPRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTIPNQKWIR 1597
+ PR G + + Y + E + LR+R E +P F+ I ++ I
Sbjct: 276 IPPRHGVKLRRTMEYLKEQRVH----EICLEKPLRIRDEPEFGLPLSDPFYCIQYKQGIA 331
Query: 1596 FESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSYGNQIYDPCVEL 1417
FE +L+N ++HKGI + H L+D F+ +L S P + AL+H+ SY +++ L
Sbjct: 332 FEIMFLVNAVLHKGIFSQHQLSDNFFSLL--RSQPKEVNIAALKHICSYRRPVFNALRRL 389
Query: 1416 GRI----LQQYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRVLRRYRSVSDRF 1249
+ L+ + K+P D +EVRRL+ITP KAYC PPE+ELSNRVLR+Y+ V+DRF
Sbjct: 390 KTVQDWLLRNPKLFKSPRRLDDIVEVRRLVITPAKAYCLPPEVELSNRVLRKYKGVADRF 449
Query: 1248 LRVCFLDESMDKLGSGALSVNVAPVAK----------------------EGFN------D 1153
LRV F+DE M + S L+ VAP+ K GF+
Sbjct: 450 LRVTFMDEGMQTMNSNVLNSYVAPIVKLITSNSYPQKTKIFQRVNTILKSGFHVCGREYS 509
Query: 1152 FSANXSPNQLRDNSAWFFADGDSITANDIRSWMGKFHKITNVAKHAARMGQCFSSTYSTV 973
F A S NQLRD SAWFFA+ +IR WMGKF + N+AK AARMGQCFSSTY+TV
Sbjct: 510 FLA-FSSNQLRDRSAWFFAEDGKTNVVNIRKWMGKFTQ-KNIAKCAARMGQCFSSTYATV 567
Query: 972 DVGRMQFR-EIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAFQIRFGGYKGV 796
+V + E+ DIERN Y FSDGIG I+PDLA +V +L+L+ NPP A+QIR+ G+KGV
Sbjct: 568 EVPPKEVNPELPDIERNNYNFSDGIGMITPDLANKVAEKLKLDGNPPCAYQIRYAGFKGV 627
Query: 795 VSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITLLSALGVKDKV 616
V+ WP + G +L LRPSM+KF DH TLEI SWTRF P +LNR+I+TLLS L V D++
Sbjct: 628 VACWPAK-GDGVRLSLRPSMNKFISDHTTLEICSWTRFQPGFLNRQIVTLLSTLNVPDEI 686
Query: 615 FRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKKEPHLKDLLTA 436
F +Q+SM+SRL +ML +VAFD+LT+SC+ N AA+M+ AGF P+ EPHL+ +LT
Sbjct: 687 FWKMQDSMLSRLNQMLVDTDVAFDVLTASCAEQ-GNAAAIMLSAGFEPQSEPHLRGMLTC 745
Query: 435 IRAVQLDDLLRKNRIFVPKGRWLIGCLDEVGKLEYGKCFIRASTTSLKDCFVKHGCTFDE 256
IRA Q L K RIFVP GRWL+GCLDE+G LE G+CFI+ ST SL++CF KHG F E
Sbjct: 746 IRAAQHWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSTPSLENCFSKHGSRFTE 805
Query: 255 QSNDPTVVTGKVIIAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGSRPHPNEASGS 76
++N+ V+ G V+IAKNPCLHPGDIRILEAVD P L+H+ DCLVFPQKG RPH +EASGS
Sbjct: 806 KANNLQVIKGHVVIAKNPCLHPGDIRILEAVDAPGLHHLFDCLVFPQKGDRPHTDEASGS 865
Query: 75 DLDGDTYFVSWEPSLIPPRGESWDP 1
DLDGD YFV+W+ +LIPP ESW P
Sbjct: 866 DLDGDLYFVTWDENLIPPNKESWPP 890
>XP_018678117.1 PREDICTED: LOW QUALITY PROTEIN: probable RNA-dependent RNA polymerase
SHL2 [Musa acuminata subsp. malaccensis]
Length = 1199
Score = 593 bits (1530), Expect = 0.0
Identities = 322/625 (51%), Positives = 421/625 (67%), Gaps = 34/625 (5%)
Frame = -2
Query: 1773 LSPRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPE-GHVVPRGLLFFTIPNQKWIR 1597
LSPR G ME++ Y R H + E R L VR E G+ FF I N+K I
Sbjct: 277 LSPRFGPKMERSLAYL-REHGVAENRPRC---RLVVRDEPGYGAHMSDPFFCIQNKKGIN 332
Query: 1596 FESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSYGNQIYDPCVEL 1417
F + +L+N L+H+GI+N H L++ F+ +L S + + AL H+ SY + I+D L
Sbjct: 333 FATMFLVNALVHRGIVNQHQLSEEFFSLLRCQSEMV--NGTALMHILSYKHPIFDAPGRL 390
Query: 1416 GRI----LQQYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRVLRRYRSVSDRF 1249
+ L+ + L+ D +EVR+L+ITPTKAYC PPE+ELSNRVLR+Y+ V+DRF
Sbjct: 391 KLVQEWLLRNPKLLRHSKFSDDIIEVRKLVITPTKAYCLPPEVELSNRVLRKYKEVADRF 450
Query: 1248 LRVCFLDESMDKLGSGALSVNVAPVAKE----------------------GFNDFSANXS 1135
LRV F DE M +L S L+ VAP+ ++ GF+ + S
Sbjct: 451 LRVTFTDEGMQQLNSNVLNYYVAPIVRDITSNSFPQKTTVFKRVKDILTNGFHLYGQKYS 510
Query: 1134 -----PNQLRDNSAWFFAD-GDSITANDIRSWMGKFHKITNVAKHAARMGQCFSSTYSTV 973
NQLRD SAWFFA+ SIT IR+WMGKF NVAK AARMGQCFSSTY+TV
Sbjct: 511 FLAFSSNQLRDRSAWFFAEVSGSITVATIRNWMGKFSN-KNVAKCAARMGQCFSSTYATV 569
Query: 972 DVGRMQFR-EIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAFQIRFGGYKGV 796
+V + E+EDI+RNGY FSDGIGKI+P+LALEV ++L L +PPSA+QIR+ G KGV
Sbjct: 570 NVTPNEVNSELEDIKRNGYVFSDGIGKITPELALEVAQKLHLTEDPPSAYQIRYAGCKGV 629
Query: 795 VSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITLLSALGVKDKV 616
V+ WP KL LRPSM+KF+ +H LE++SWTRF P +LNR+I+TLLS+L V D V
Sbjct: 630 VAVWPGNDD-GIKLSLRPSMNKFESNHTILEVVSWTRFQPGFLNRQIVTLLSSLKVPDSV 688
Query: 615 FRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKKEPHLKDLLTA 436
F +Q++M+ +L ++L VAF+ILT+SC+ NTAA+M+ AGF P+ EPHLK +L+
Sbjct: 689 FERMQDTMILKLNQILHDTNVAFEILTTSCAEQ-GNTAAMMLSAGFRPQSEPHLKAMLSC 747
Query: 435 IRAVQLDDLLRKNRIFVPKGRWLIGCLDEVGKLEYGKCFIRASTTSLKDCFVKHGCTFDE 256
IR+ QL DLL K +IFVPKGR L+GCLDE+G LE+G+CFI+AST SL++C KHG F
Sbjct: 748 IRSTQLGDLLAKTKIFVPKGRLLMGCLDELGVLEHGQCFIQASTPSLENCLSKHGSRFSA 807
Query: 255 QSNDPTVVTGKVIIAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGSRPHPNEASGS 76
N+ V+ G V + KNPCLHPGDIRILEAVD+PEL+H+VDCL+FPQ+G RPH NEASGS
Sbjct: 808 SQNNRQVIVGTVAVGKNPCLHPGDIRILEAVDVPELHHLVDCLIFPQRGDRPHTNEASGS 867
Query: 75 DLDGDTYFVSWEPSLIPPRGESWDP 1
DLDGD YFV+W+ +L+PP +SW P
Sbjct: 868 DLDGDLYFVTWDENLLPPGKKSWVP 892
>XP_011459183.1 PREDICTED: RNA-dependent RNA polymerase 6 isoform X2 [Fragaria vesca
subsp. vesca]
Length = 1197
Score = 593 bits (1529), Expect = 0.0
Identities = 319/625 (51%), Positives = 419/625 (67%), Gaps = 34/625 (5%)
Frame = -2
Query: 1773 LSPRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPE-GHVVPRGLLFFTIPNQKWIR 1597
+ PR G +++A Y + E R++ E G P F+I QK I
Sbjct: 274 IPPRHGAKLKKAMIYLKERRVQ----ELFIKKPPRIQDEPGFGNPMSDALFSIHYQKNIS 329
Query: 1596 FESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSYGNQIYDPCVEL 1417
F+ +L+N ++HKGILN H L++ F+ +L + P + AL+H+ SY + ++D L
Sbjct: 330 FDILFLVNAVMHKGILNQHQLSESFFDLL--RNQPEEINVAALKHLCSYKHPVFDASKRL 387
Query: 1416 GRI----LQQYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRVLRRYRSVSDRF 1249
+ L+ + +K P D EVRRL+ITPTKAYC PPE+ELSNRVLR+Y+ V+DRF
Sbjct: 388 KLVQEWLLRNPKLIKNPKRLDDIAEVRRLVITPTKAYCLPPEVELSNRVLRKYKEVADRF 447
Query: 1248 LRVCFLDESMDKLGSGALSVNVAPVAKE----------------------GFN------D 1153
LRV F+DE M + S ++ VAP+ KE GF+
Sbjct: 448 LRVTFMDEGMQTMNSNVMNSYVAPIVKEITENTFPQKTKVYVRIRAILMNGFHLCGRKYS 507
Query: 1152 FSANXSPNQLRDNSAWFFADGDSITANDIRSWMGKFHKITNVAKHAARMGQCFSSTYSTV 973
F A S NQLRD SAWFFA+ +I+ I++WMG+F NVAK AARMGQCFSSTY+TV
Sbjct: 508 FLA-FSSNQLRDRSAWFFAEDKTISIQGIKNWMGRFTN-RNVAKCAARMGQCFSSTYATV 565
Query: 972 DVGRMQFR-EIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAFQIRFGGYKGV 796
+V Q E+ DIERNGY FSDGIG+I+PDLA+EV +L+L+ +PPSA+QIR+GG KGV
Sbjct: 566 EVPSTQVNHELPDIERNGYVFSDGIGRITPDLAMEVAEKLKLDRDPPSAYQIRYGGCKGV 625
Query: 795 VSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITLLSALGVKDKV 616
V+ WP G ++L LR SM+KF DH TLEI SWTR P +LNR+IITLLSAL V D++
Sbjct: 626 VACWP-STGDGFRLSLRRSMNKFASDHTTLEICSWTRLQPGFLNRQIITLLSALNVPDEI 684
Query: 615 FRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKKEPHLKDLLTA 436
F +Q +MVS+L++ML +VAFD+LT+SC+ N+AA+M+ AGF P+ EPHL+ +LT
Sbjct: 685 FWTMQETMVSKLKQMLVDTDVAFDVLTASCAEQ-GNSAAIMLSAGFKPQTEPHLRGMLTC 743
Query: 435 IRAVQLDDLLRKNRIFVPKGRWLIGCLDEVGKLEYGKCFIRASTTSLKDCFVKHGCTFDE 256
I+A QL L K RIFVP GRWL+GCLDE+G LE G+CF++ ST SL++CF KHG FD+
Sbjct: 744 IQAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEQGQCFVQVSTPSLENCFAKHGSRFDQ 803
Query: 255 QSNDPTVVTGKVIIAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGSRPHPNEASGS 76
+ V+ G V++AKNPCLHPGDIRILEAVD P L+H+ DCLVFPQKG RPH +EASGS
Sbjct: 804 TDKNLQVIKGFVVVAKNPCLHPGDIRILEAVDAPGLHHLHDCLVFPQKGHRPHTDEASGS 863
Query: 75 DLDGDTYFVSWEPSLIPPRGESWDP 1
DLDGD YFV+W+ +LIPPR +SW P
Sbjct: 864 DLDGDLYFVTWDENLIPPRKKSWQP 888
>XP_004291459.2 PREDICTED: RNA-dependent RNA polymerase 6 isoform X1 [Fragaria vesca
subsp. vesca]
Length = 1200
Score = 593 bits (1529), Expect = 0.0
Identities = 319/625 (51%), Positives = 419/625 (67%), Gaps = 34/625 (5%)
Frame = -2
Query: 1773 LSPRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPE-GHVVPRGLLFFTIPNQKWIR 1597
+ PR G +++A Y + E R++ E G P F+I QK I
Sbjct: 277 IPPRHGAKLKKAMIYLKERRVQ----ELFIKKPPRIQDEPGFGNPMSDALFSIHYQKNIS 332
Query: 1596 FESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSYGNQIYDPCVEL 1417
F+ +L+N ++HKGILN H L++ F+ +L + P + AL+H+ SY + ++D L
Sbjct: 333 FDILFLVNAVMHKGILNQHQLSESFFDLL--RNQPEEINVAALKHLCSYKHPVFDASKRL 390
Query: 1416 GRI----LQQYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRVLRRYRSVSDRF 1249
+ L+ + +K P D EVRRL+ITPTKAYC PPE+ELSNRVLR+Y+ V+DRF
Sbjct: 391 KLVQEWLLRNPKLIKNPKRLDDIAEVRRLVITPTKAYCLPPEVELSNRVLRKYKEVADRF 450
Query: 1248 LRVCFLDESMDKLGSGALSVNVAPVAKE----------------------GFN------D 1153
LRV F+DE M + S ++ VAP+ KE GF+
Sbjct: 451 LRVTFMDEGMQTMNSNVMNSYVAPIVKEITENTFPQKTKVYVRIRAILMNGFHLCGRKYS 510
Query: 1152 FSANXSPNQLRDNSAWFFADGDSITANDIRSWMGKFHKITNVAKHAARMGQCFSSTYSTV 973
F A S NQLRD SAWFFA+ +I+ I++WMG+F NVAK AARMGQCFSSTY+TV
Sbjct: 511 FLA-FSSNQLRDRSAWFFAEDKTISIQGIKNWMGRFTN-RNVAKCAARMGQCFSSTYATV 568
Query: 972 DVGRMQFR-EIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAFQIRFGGYKGV 796
+V Q E+ DIERNGY FSDGIG+I+PDLA+EV +L+L+ +PPSA+QIR+GG KGV
Sbjct: 569 EVPSTQVNHELPDIERNGYVFSDGIGRITPDLAMEVAEKLKLDRDPPSAYQIRYGGCKGV 628
Query: 795 VSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITLLSALGVKDKV 616
V+ WP G ++L LR SM+KF DH TLEI SWTR P +LNR+IITLLSAL V D++
Sbjct: 629 VACWP-STGDGFRLSLRRSMNKFASDHTTLEICSWTRLQPGFLNRQIITLLSALNVPDEI 687
Query: 615 FRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKKEPHLKDLLTA 436
F +Q +MVS+L++ML +VAFD+LT+SC+ N+AA+M+ AGF P+ EPHL+ +LT
Sbjct: 688 FWTMQETMVSKLKQMLVDTDVAFDVLTASCAEQ-GNSAAIMLSAGFKPQTEPHLRGMLTC 746
Query: 435 IRAVQLDDLLRKNRIFVPKGRWLIGCLDEVGKLEYGKCFIRASTTSLKDCFVKHGCTFDE 256
I+A QL L K RIFVP GRWL+GCLDE+G LE G+CF++ ST SL++CF KHG FD+
Sbjct: 747 IQAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEQGQCFVQVSTPSLENCFAKHGSRFDQ 806
Query: 255 QSNDPTVVTGKVIIAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGSRPHPNEASGS 76
+ V+ G V++AKNPCLHPGDIRILEAVD P L+H+ DCLVFPQKG RPH +EASGS
Sbjct: 807 TDKNLQVIKGFVVVAKNPCLHPGDIRILEAVDAPGLHHLHDCLVFPQKGHRPHTDEASGS 866
Query: 75 DLDGDTYFVSWEPSLIPPRGESWDP 1
DLDGD YFV+W+ +LIPPR +SW P
Sbjct: 867 DLDGDLYFVTWDENLIPPRKKSWQP 891
>KQK20564.1 hypothetical protein BRADI_1g55350 [Brachypodium distachyon]
Length = 963
Score = 577 bits (1487), Expect = 0.0
Identities = 314/629 (49%), Positives = 405/629 (64%), Gaps = 38/629 (6%)
Frame = -2
Query: 1773 LSPRTGHTMEQAKRYFS--RYHLLGETVERVFDSSLRVRPEGHVV-PRGLLFFTIPNQKW 1603
++PR M++A Y R ++ TV L+VR E P LFF + + +
Sbjct: 283 VAPRKWIMMDRALAYMKGQRVLIVESTVWSGPRRGLKVRDEPEFEEPMQDLFFCVQHAEG 342
Query: 1602 IRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSYGNQIYDPCV 1423
++F +L+N L+HKGI+N H L F +L + + AL+ +++
Sbjct: 343 LKFPVLFLVNALVHKGIINQHQLTPEFLSLLSGRDDDV--NVAALKEFWGDKFPVFNARK 400
Query: 1422 ELG----RILQQYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRVLRRYRSVSD 1255
L R+ + L++ +G D +EVRRL+ITPT A C PP+IELSNRVLR Y V+D
Sbjct: 401 RLEHAHRRVASNPKLLRSGKVGDDNVEVRRLVITPTSASCLPPQIELSNRVLRHYHEVAD 460
Query: 1254 RFLRVCFLDESMDKLGSGALSVNVAPVAK----------------------EGFN----- 1156
RFLRV F+DE M L + L+ AP+ K EGF+
Sbjct: 461 RFLRVTFMDEGMQSLNNNVLNFYTAPIVKALRPNSFQQKTAVYKRVKMFLTEGFHMCGRK 520
Query: 1155 -DFSANXSPNQLRDNSAWFFADGDSITANDIRSWMGKFHKITNVAKHAARMGQCFSSTYS 979
F A S NQLRD SAWFFA+ T IR WMG+F NVAKHAARMGQCFSSTY+
Sbjct: 521 YSFLA-FSSNQLRDRSAWFFAEDSKTTVESIRKWMGRFTS-KNVAKHAARMGQCFSSTYA 578
Query: 978 TVDVGRMQFRE-IEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAFQIRFGGYK 802
TV V + E +ED+ERN YTFSDGIGKI+PDLA+EV +LQL +PPSA+QIR+ GYK
Sbjct: 579 TVMVKPDEVNESLEDVERNNYTFSDGIGKITPDLAMEVAEKLQLMDSPPSAYQIRYAGYK 638
Query: 801 GVVSTWPIEPGMN--YKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITLLSALGV 628
GV++ W G N +L LRPSM KF+ H LE++SWTRF P +LNR+II LLS+L V
Sbjct: 639 GVIAVWQ---GNNNGIRLSLRPSMKKFESKHSVLEVVSWTRFQPGFLNRQIILLLSSLNV 695
Query: 627 KDKVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKKEPHLKD 448
D +F +Q SM+ L ++L +VAF+++T+SC+ NTAA+M+ AGF P EPHL+
Sbjct: 696 SDDIFSQMQESMLFNLNKILLDSDVAFEVVTTSCAEQ-GNTAALMLSAGFGPGTEPHLRG 754
Query: 447 LLTAIRAVQLDDLLRKNRIFVPKGRWLIGCLDEVGKLEYGKCFIRASTTSLKDCFVKHGC 268
+L AIR+ QL DLL K RIFVPKGRWL+GCLDE+G LE G+CF++AS SL CF+KHG
Sbjct: 755 MLLAIRSAQLQDLLEKTRIFVPKGRWLMGCLDELGVLEQGQCFVQASAASLDRCFLKHGS 814
Query: 267 TFDEQSNDPTVVTGKVIIAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGSRPHPNE 88
F N +V G V+IAKNPCLHPGD+RILEAVD+PEL+H+VDCLVFPQKG RPHPNE
Sbjct: 815 RFSANKNTDIIV-GTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHPNE 873
Query: 87 ASGSDLDGDTYFVSWEPSLIPPRGESWDP 1
ASGSDLDGD YFV+W+ L+PP +SW+P
Sbjct: 874 ASGSDLDGDLYFVTWDEKLVPPGKKSWNP 902
>XP_010696115.1 PREDICTED: RNA-dependent RNA polymerase 6 [Beta vulgaris subsp.
vulgaris] KMT18923.1 hypothetical protein BVRB_2g030230
[Beta vulgaris subsp. vulgaris]
Length = 1208
Score = 584 bits (1506), Expect = 0.0
Identities = 324/629 (51%), Positives = 406/629 (64%), Gaps = 38/629 (6%)
Frame = -2
Query: 1773 LSPRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPEGHVVPRGLL--FFTIPNQKWI 1600
LSPR + + +Y + E +++ LRV E + R L FF + ++ +
Sbjct: 275 LSPRNRGKLNRVIKYLMERRVSVEYPKQL----LRVTDEHNHCLRNLSDPFFCVQYEEGV 330
Query: 1599 RFESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSYGNQIYDPCVE 1420
FE ++LN +HKGI+N + L+ +F+ +L S + + ALRH+ SY ++D
Sbjct: 331 PFEVTFMLNAAVHKGIINEYQLSGKFFDLLRTQSAEV--NLAALRHICSYKRPVFDAYKR 388
Query: 1419 LGRI----LQQYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRVLRRYRSVSDR 1252
L + L+ R L+ P D +EVRRLIITPTKAYC PPE+ELSNRVLR YR VSDR
Sbjct: 389 LKLVHDWLLRNPRLLRDPKKLSDIVEVRRLIITPTKAYCLPPEVELSNRVLRHYRDVSDR 448
Query: 1251 FLRVCFLDESMDKLGSGALSVNVAPVAK----------------------EGFN------ 1156
FLRV F+DE+M L S LS P+ K +GF
Sbjct: 449 FLRVTFMDEAMQMLNSNVLSYYAPPIVKMITSNTYLQRTSVFKRVNVMLKQGFKLCGRTY 508
Query: 1155 DFSANXSPNQLRDNSAWFFADGDS---ITANDIRSWMGKFHKITNVAKHAARMGQCFSST 985
F A S NQLRD SAWFFA+ +T IR+WMGKF NVAK AARMGQCFSST
Sbjct: 509 TFLA-FSSNQLRDRSAWFFAEDKKDKRLTVTSIRNWMGKFTN-RNVAKCAARMGQCFSST 566
Query: 984 YSTVDVGRMQFR-EIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAFQIRFGG 808
Y+TV+V E+ DIERNGY FSDGIG I+PDLALEV +LQ+ NPP A+QIRF G
Sbjct: 567 YATVEVSPDHVESELPDIERNGYVFSDGIGIITPDLALEVAEKLQMKDNPPCAYQIRFAG 626
Query: 807 YKGVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITLLSALGV 628
KGVV+ WP + N ++ LRPSM+KF H +E+ SWTRF P +LNR+IITLLSAL V
Sbjct: 627 CKGVVACWPTKND-NIRIYLRPSMNKFQSRHTVVEVCSWTRFQPGFLNRQIITLLSALDV 685
Query: 627 KDKVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKKEPHLKD 448
D VF +Q +M+S+L +ML EVAFD+LT+SC+ NTAA+M+ AGF P+ EPHL+
Sbjct: 686 SDDVFWRMQETMISKLDQMLLNTEVAFDVLTASCAEQ-GNTAAIMLSAGFKPQTEPHLRG 744
Query: 447 LLTAIRAVQLDDLLRKNRIFVPKGRWLIGCLDEVGKLEYGKCFIRASTTSLKDCFVKHGC 268
+L+ IRA QL DL K RIFV GRWL+GCLDE G LE G+CFI+ S SL++CF KHG
Sbjct: 745 MLSCIRAAQLGDLREKARIFVQSGRWLMGCLDEAGVLEQGQCFIQVSNPSLQNCFSKHGS 804
Query: 267 TFDEQSNDPTVVTGKVIIAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGSRPHPNE 88
F E D ++ G VI+AKNPCLHPGDIRILEAVD P+L+H+ DCL+FPQKG RPH NE
Sbjct: 805 RFSEVKKDLQIIKGLVIVAKNPCLHPGDIRILEAVDSPKLHHLFDCLIFPQKGERPHTNE 864
Query: 87 ASGSDLDGDTYFVSWEPSLIPPRGESWDP 1
ASGSDLDGD YFVSW+ +LIPP SW P
Sbjct: 865 ASGSDLDGDLYFVSWDDNLIPPSKRSWIP 893
>XP_018822243.1 PREDICTED: RNA-dependent RNA polymerase 6 [Juglans regia]
XP_018822244.1 PREDICTED: RNA-dependent RNA polymerase 6
[Juglans regia] XP_018822245.1 PREDICTED: RNA-dependent
RNA polymerase 6 [Juglans regia]
Length = 1199
Score = 584 bits (1505), Expect = 0.0
Identities = 315/625 (50%), Positives = 411/625 (65%), Gaps = 34/625 (5%)
Frame = -2
Query: 1773 LSPRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTIPNQKWIR 1597
+ PR G + + Y + E + LR+R E +P FF I ++ I
Sbjct: 276 IPPRHGVKLRRTMEYLKEQRVH----EICLEKPLRIRDEPEFGLPLSDPFFCIQYKQGIA 331
Query: 1596 FESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSYGNQIYDPCVEL 1417
FE +L+N ++HKGI + H L+D F+ +L S P + AL+H+ SY +++ L
Sbjct: 332 FEIMFLVNAVLHKGIFSQHQLSDNFFSLL--RSQPKEVNIAALKHICSYRRPVFNALRRL 389
Query: 1416 GRI----LQQYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRVLRRYRSVSDRF 1249
+ L+ + K+P D +EVRRL+ITP KAYC PPE+ELSNRVLR+Y+ V+DRF
Sbjct: 390 KTVQDWLLRNPKLFKSPRRLDDIVEVRRLVITPAKAYCLPPEVELSNRVLRKYKGVADRF 449
Query: 1248 LRVCFLDESMDKLGSGALSVNVAPVAK----------------------EGFN------D 1153
LRV F+DE M + S L+ VAP+ K GF+
Sbjct: 450 LRVTFMDEGMQTMNSNVLNSYVAPIVKLITSNSYPQKTKIFQRVNTILKSGFHVCGREYS 509
Query: 1152 FSANXSPNQLRDNSAWFFADGDSITANDIRSWMGKFHKITNVAKHAARMGQCFSSTYSTV 973
F A S NQLRD SAWFFA+ +IR+WMGKF + N+AK AARMGQCFSSTY+TV
Sbjct: 510 FLA-FSSNQLRDRSAWFFAEDGKTNVVNIRNWMGKFTQ-KNIAKCAARMGQCFSSTYATV 567
Query: 972 DVGRMQFR-EIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAFQIRFGGYKGV 796
+V + ++ D+ERN Y FSDGIG I+PDLA +V +L+L+ NPP A+QIR+ G+KGV
Sbjct: 568 EVPPKEVNPKLPDVERNDYIFSDGIGMITPDLANKVAEKLKLDGNPPCAYQIRYAGFKGV 627
Query: 795 VSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITLLSALGVKDKV 616
V+ WP + G +L LRPSM+KF DH TLEI SWTRF P +LNR+I+TLLS L V D++
Sbjct: 628 VACWPAK-GDGVRLSLRPSMNKFISDHTTLEICSWTRFQPGFLNRQIVTLLSTLNVPDEI 686
Query: 615 FRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKKEPHLKDLLTA 436
F +Q+SM+SRL +ML +VAFD+LT+SC+ N AA+M+ AGF P+ EPHL+ +LT
Sbjct: 687 FWKMQDSMLSRLNQMLVDTDVAFDVLTASCAEQ-GNAAAIMLSAGFEPQSEPHLRGMLTC 745
Query: 435 IRAVQLDDLLRKNRIFVPKGRWLIGCLDEVGKLEYGKCFIRASTTSLKDCFVKHGCTFDE 256
IRA Q L K RIFVP GRWL+GCLDE+G LE G+CFI+ ST SL++CF KHG F E
Sbjct: 746 IRAAQHWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSTPSLENCFSKHGSRFTE 805
Query: 255 QSNDPTVVTGKVIIAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGSRPHPNEASGS 76
++N+ V+ G V+IAKNPCLHPGDIRILEAVD P L+H+ DCLVFPQKG RPH +EASGS
Sbjct: 806 KANNLQVIKGHVVIAKNPCLHPGDIRILEAVDDPGLHHLFDCLVFPQKGDRPHTDEASGS 865
Query: 75 DLDGDTYFVSWEPSLIPPRGESWDP 1
DLDGD YFV+W+ +LIPP ESW P
Sbjct: 866 DLDGDLYFVTWDENLIPPSKESWPP 890
>XP_019173988.1 PREDICTED: RNA-dependent RNA polymerase 6 [Ipomoea nil]
XP_019173989.1 PREDICTED: RNA-dependent RNA polymerase 6
[Ipomoea nil]
Length = 1196
Score = 583 bits (1503), Expect = 0.0
Identities = 319/626 (50%), Positives = 410/626 (65%), Gaps = 35/626 (5%)
Frame = -2
Query: 1773 LSPRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPEGHVVPRGLLFFTIPNQKWIRF 1594
+ PR G T +A YF + + + +L+VR + FF I N+K + F
Sbjct: 275 IPPRKGPTFNKAMEYFGKQRVCIDYPRH----NLQVRDKCDFKAPIPPFFCIQNEKGLSF 330
Query: 1593 ESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSYGNQIYDPCVELG 1414
+LLN ++HKGI N H + D F+ +L + P + AL+H+ +Y +Y+ L
Sbjct: 331 PVLFLLNAVLHKGIFNQHQMTDEFFTLL--RNQPENVNLAALKHIWAYKWPMYEASKAL- 387
Query: 1413 RILQQYRHLKAPFIGP------DTMEVRRLIITPTKAYCFPPEIELSNRVLRRYRSVSDR 1252
+ Q LK P + D EVRRLIITPTKAYC PPE+ELSNRVLR+YR +SDR
Sbjct: 388 -MFVQKWLLKNPKLIEGRKELDDIAEVRRLIITPTKAYCLPPEVELSNRVLRKYRDISDR 446
Query: 1251 FLRVCFLDESMDKLGSGALSVNVAPVAKE----------------------GFN------ 1156
FLRV F+DE M L LS AP+ K+ GF
Sbjct: 447 FLRVTFMDEGMRPLNRNVLSFYPAPIVKDITKASIPQKTVVFMRVKNILKRGFTLCDRHY 506
Query: 1155 DFSANXSPNQLRDNSAWFFADGDSITANDIRSWMGKFHKITNVAKHAARMGQCFSSTYST 976
F A SPNQLRD SAWFFADG I +I++WMG+F NVAK AARMG CFSSTY+T
Sbjct: 507 SFLA-FSPNQLRDRSAWFFADGPDIRVPNIKTWMGRFTN-KNVAKCAARMGLCFSSTYAT 564
Query: 975 VDVGRMQFRE-IEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAFQIRFGGYKG 799
+V + E + +IERN Y FSDGIG I+PDLA +V +LQL++NPP A+QIR+ G+KG
Sbjct: 565 FNVQSSEVDEKLPEIERNEYIFSDGIGIITPDLAAKVAEKLQLSVNPPCAYQIRYSGFKG 624
Query: 798 VVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITLLSALGVKDK 619
VV+ WP L LRPSM KF+ HR LEI SWTRF P +LNR+I+TLLSAL V+D+
Sbjct: 625 VVACWPGRID-GVHLYLRPSMKKFESTHRVLEICSWTRFQPGFLNRQIVTLLSALAVEDQ 683
Query: 618 VFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKKEPHLKDLLT 439
+F +Q +M+SRL +M+ +VAFDILT SC+ NTAA+M+ AGF P+ EPHL+ +L
Sbjct: 684 IFWKMQETMISRLNQMVVDADVAFDILTGSCAEQ-GNTAAIMLSAGFKPQTEPHLQGMLA 742
Query: 438 AIRAVQLDDLLRKNRIFVPKGRWLIGCLDEVGKLEYGKCFIRASTTSLKDCFVKHGCTFD 259
+IRA QL DL + RIFVP GRWL+GCLDE+G+LE G+CFI+ S+ SL++CFVKHG F+
Sbjct: 743 SIRAAQLSDLRERARIFVPSGRWLMGCLDELGELEQGQCFIQVSSASLENCFVKHGSKFE 802
Query: 258 EQSNDPTVVTGKVIIAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGSRPHPNEASG 79
+ N V+ G V+IAKNPCLHPGD+RIL+AVDIP L+H+ DCLVFPQKG+RPH NEASG
Sbjct: 803 ARKN-LKVIQGLVVIAKNPCLHPGDVRILKAVDIPRLHHLYDCLVFPQKGNRPHTNEASG 861
Query: 78 SDLDGDTYFVSWEPSLIPPRGESWDP 1
SDLDGD YFV+W+ +LIPP +SW P
Sbjct: 862 SDLDGDLYFVTWDENLIPPSKQSWMP 887
>XP_002324295.1 SILENCING DEFECTIVE 1 family protein [Populus trichocarpa] EEF02860.1
SILENCING DEFECTIVE 1 family protein [Populus
trichocarpa]
Length = 1200
Score = 583 bits (1503), Expect = 0.0
Identities = 313/627 (49%), Positives = 414/627 (66%), Gaps = 36/627 (5%)
Frame = -2
Query: 1773 LSPRTGHTMEQAKRYFS--RYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTIPNQKW 1603
+ PR G + +A +Y R +L E R +R+ E +P FF I +++
Sbjct: 274 IPPRHGSKLRKAVKYLKERRVQVLQEENHR---RRIRILDEPDFGMPMSDPFFCIHHKEG 330
Query: 1602 IRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSYGNQIYDPCV 1423
I FE +L+N ++HKGI N H L++ F+ +L T + S AL+H+ +Y +++
Sbjct: 331 IAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQHTEVNVS--ALKHICTYRRPVFNAYR 388
Query: 1422 ELGRI----LQQYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRVLRRYRSVSD 1255
L + L+ K P D +E+RRL+ITPTKAYC PPE+ELSNRVLR+Y+ V+D
Sbjct: 389 RLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVAD 448
Query: 1254 RFLRVCFLDESMDKLGSGALSVNVAPVAK----------------------EGFN----- 1156
RFLRV F+DE + ++ S L+ VAP+ + EGF
Sbjct: 449 RFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNSFPQKTRIFKRVRSILTEGFYLCGRR 508
Query: 1155 -DFSANXSPNQLRDNSAWFFADGDSITANDIRSWMGKFHKITNVAKHAARMGQCFSSTYS 979
F A S NQLRD SAWFF++ +I+ D++SWMGKF N+AK AARMGQCFSSTY+
Sbjct: 509 YSFLA-FSANQLRDQSAWFFSEERNISVLDVKSWMGKFTN-RNIAKCAARMGQCFSSTYA 566
Query: 978 TVDVGRMQFR-EIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAFQIRFGGYK 802
T++V + ++ DIERNGY FSDGIG I+PDLA EV +L+L+I+PP A+QIR+ G K
Sbjct: 567 TIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDLAREVAEKLKLDIDPPCAYQIRYAGCK 626
Query: 801 GVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITLLSALGVKD 622
GVV+ WP + G +L LRPSM+KF +H TLEI SWTRF P +LNR+IITLLS L V D
Sbjct: 627 GVVACWPGK-GDGVRLSLRPSMNKFQSNHTTLEICSWTRFQPGFLNRQIITLLSTLNVPD 685
Query: 621 KVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKKEPHLKDLL 442
VF +Q +MVS+L +M +VAFD+LT+SC+ N AA+M+ AGF P +EPHL+ +L
Sbjct: 686 AVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQ-GNVAAIMLSAGFKPDREPHLRGML 744
Query: 441 TAIRAVQLDDLLRKNRIFVPKGRWLIGCLDEVGKLEYGKCFIRASTTSLKDCFVKHGCTF 262
T +RA QL DL K RIFVP GRWL+GCLDE+G LE G+CFI+ S +SL+ CF+KHG F
Sbjct: 745 TCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLEQGQCFIQVSNSSLEKCFMKHGAKF 804
Query: 261 DEQSNDPTVVTGKVIIAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGSRPHPNEAS 82
E + V+ G V+IAKNPCLHPGD+R+LEAVD+P L+H+ DCLVFPQKG RPH NEAS
Sbjct: 805 SEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVPGLHHLYDCLVFPQKGERPHTNEAS 864
Query: 81 GSDLDGDTYFVSWEPSLIPPRGESWDP 1
GSDLDGD YFV+W+ +LIPP SW P
Sbjct: 865 GSDLDGDLYFVTWDENLIPPSKRSWIP 891
>XP_011026450.1 PREDICTED: RNA-dependent RNA polymerase 6-like [Populus euphratica]
Length = 1200
Score = 582 bits (1499), Expect = 0.0
Identities = 314/627 (50%), Positives = 413/627 (65%), Gaps = 36/627 (5%)
Frame = -2
Query: 1773 LSPRTGHTMEQAKRYFS--RYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTIPNQKW 1603
+ PR G + +A +Y R +L E R +R+ E +P FF I +++
Sbjct: 274 IPPRHGSKLRKAVKYLKERRVEVLQEENHR---RRIRILDEPDFGMPMSDPFFCIHHKEG 330
Query: 1602 IRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSYGNQIYDPCV 1423
I F+ +L+N ++HKGI N H L++ F+ +L T + S AL+H+ +Y +++
Sbjct: 331 IAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQHTEVNVS--ALKHICTYRRPVFNAYK 388
Query: 1422 ELGRI----LQQYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRVLRRYRSVSD 1255
L + L+ K P D +E+RRL+ITPTKAYC PPE+ELSNRVLR+Y+ V+D
Sbjct: 389 RLKAVQEWLLKNPNLFKNPKQLGDIVEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVAD 448
Query: 1254 RFLRVCFLDESMDKLGSGALSVNVAPVAK----------------------EGFN----- 1156
RFLRV F+DE + ++ S L+ VAP+ + EGF
Sbjct: 449 RFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNSFHQKTRIFKRVRSILTEGFYLCGRR 508
Query: 1155 -DFSANXSPNQLRDNSAWFFADGDSITANDIRSWMGKFHKITNVAKHAARMGQCFSSTYS 979
F A S NQLRD SAWFFA+ +++ DI+SWMGKF N+AK AARMGQCFSSTY+
Sbjct: 509 YSFLA-FSANQLRDQSAWFFAEERNVSVLDIKSWMGKFTN-RNIAKCAARMGQCFSSTYA 566
Query: 978 TVDVGRMQFR-EIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAFQIRFGGYK 802
T++V + ++ DIERNGY FSDGIG I+PDLA EV +L+L+I+PP A+QIR+ G K
Sbjct: 567 TIEVPPEEVNFDLPDIERNGYVFSDGIGIITPDLAREVAEKLKLDIDPPCAYQIRYAGCK 626
Query: 801 GVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITLLSALGVKD 622
GVV+ WP + G L LRPSM+KF +H TLEI SWTRF P +LNR+IITLLS L V D
Sbjct: 627 GVVACWPGK-GDGVHLSLRPSMNKFQSNHTTLEICSWTRFQPGFLNRQIITLLSTLNVPD 685
Query: 621 KVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKKEPHLKDLL 442
VF +Q +MVS+L +M +VAFD+LT+SC+ N AA+M+ AGF P+KEPHL+ +L
Sbjct: 686 AVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQ-GNVAAIMLSAGFKPQKEPHLRGML 744
Query: 441 TAIRAVQLDDLLRKNRIFVPKGRWLIGCLDEVGKLEYGKCFIRASTTSLKDCFVKHGCTF 262
T +RA QL L K RIFVP GRWL+GCLDE+G LE G+CFI+ S +SL+ CF+KHG F
Sbjct: 745 TCVRAAQLWGLREKARIFVPSGRWLMGCLDELGMLEQGQCFIQVSNSSLEKCFIKHGAKF 804
Query: 261 DEQSNDPTVVTGKVIIAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGSRPHPNEAS 82
E + VV G V+IAKNPCLHPGD+R+LEAVD+P L+H+ DCLVFPQKG RPH NEAS
Sbjct: 805 SEAKKNLQVVKGTVVIAKNPCLHPGDVRVLEAVDVPGLHHLYDCLVFPQKGERPHTNEAS 864
Query: 81 GSDLDGDTYFVSWEPSLIPPRGESWDP 1
GSDLDGD YFV+W+ +LIPP SW P
Sbjct: 865 GSDLDGDLYFVTWDENLIPPSKRSWIP 891
>XP_009616479.1 PREDICTED: RNA-dependent RNA polymerase 6, partial [Nicotiana
tomentosiformis]
Length = 956
Score = 573 bits (1476), Expect = 0.0
Identities = 318/625 (50%), Positives = 405/625 (64%), Gaps = 34/625 (5%)
Frame = -2
Query: 1773 LSPRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTIPNQKWIR 1597
+ PR G + E+A YFS + VE LRV+ E V FF N+ I
Sbjct: 32 IRPRNGPSFEKAMAYFSFRRV--PMVEMCNRKMLRVKDEPDFGVSMSDPFFCFQNEG-IS 88
Query: 1596 FESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSYGNQIYDPCVEL 1417
F +L+N ++HKGI+N H + + F+ +L + + AL+HM SY + D +L
Sbjct: 89 FRVLFLVNAVLHKGIVNQHQMANEFFYLLRSHQEEV--NLAALKHMFSYKWPVNDAIQKL 146
Query: 1416 GRI----LQQYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRVLRRYRSVSDRF 1249
I L+ + L D +EVRRL+ITPTKAYC PP +ELSNRVLR Y+ V+DRF
Sbjct: 147 AGIQKWLLKNPKLLDRTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRF 206
Query: 1248 LRVCFLDESMDKLGSGALSVNVAPVAKE----------------------GFN------D 1153
LRV F+DE M L L+ A + +E GF+
Sbjct: 207 LRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYS 266
Query: 1152 FSANXSPNQLRDNSAWFFADGDSITANDIRSWMGKFHKITNVAKHAARMGQCFSSTYSTV 973
F A S NQLRD SAWFFA+ I I SWMG+F NVAK AARMGQCFSSTY+TV
Sbjct: 267 FLA-FSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATV 324
Query: 972 DVGRMQFR-EIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAFQIRFGGYKGV 796
+V + E+ DIERNGY FSDGIG IS DLA+EV +L L++NPPSA+QIR+ G KGV
Sbjct: 325 EVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLSVNPPSAYQIRYAGCKGV 384
Query: 795 VSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITLLSALGVKDKV 616
V+ WP + +L LRPSM KFD +H LEI SWTRF P +LNR+I+TLLS+L VKD +
Sbjct: 385 VACWPTKND-GIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGI 443
Query: 615 FRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKKEPHLKDLLTA 436
F ++Q M+S L +ML +VAFD++T+SC+ NTAA+M+ AGF P+ EPHL+ +L++
Sbjct: 444 FWEMQKEMISGLDKMLVDSDVAFDVITASCAEA-GNTAALMLSAGFKPQSEPHLRGMLSS 502
Query: 435 IRAVQLDDLLRKNRIFVPKGRWLIGCLDEVGKLEYGKCFIRASTTSLKDCFVKHGCTFDE 256
IRA QL DL K RIFVP GRWL+GCLDE+G+LE G+CFI+ S+ SL++CFVKHG F +
Sbjct: 503 IRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSD 562
Query: 255 QSNDPTVVTGKVIIAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGSRPHPNEASGS 76
+ VV G V+IAKNPCLHPGD+RILEAVD+P L H+ DCLVFPQKG RPH NEASGS
Sbjct: 563 IKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGS 622
Query: 75 DLDGDTYFVSWEPSLIPPRGESWDP 1
DLDGD YFV+W+ +LIPP +SW P
Sbjct: 623 DLDGDLYFVTWDENLIPPSKKSWIP 647
>XP_006645957.1 PREDICTED: probable RNA-dependent RNA polymerase SHL2 [Oryza
brachyantha]
Length = 1105
Score = 576 bits (1485), Expect = 0.0
Identities = 305/579 (52%), Positives = 381/579 (65%), Gaps = 35/579 (6%)
Frame = -2
Query: 1632 LFFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHS 1453
+FF + + + +RF +L+N L+HKGI+N H L F+ +L + + + AL+
Sbjct: 230 VFFCLQHVEGLRFPVLFLVNALVHKGIINQHQLTPEFFSLLRRKADDI--NVAALKDFWG 287
Query: 1452 YGNQIYDPCVELGRILQQYRH---LKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRV 1282
++D C L + L + L IG D EVRRL+ITPT+AYC PPE+E SNRV
Sbjct: 288 DKFPVFDACRRLKKALDRVARNPKLLCSKIGDDNEEVRRLVITPTRAYCLPPEVERSNRV 347
Query: 1281 LRRYRSVSDRFLRVCFLDESMDKLGSGALSVNVAPVAK---------------------- 1168
LRRYR V+DRFLRV F+DE M+ L + L+ AP+ K
Sbjct: 348 LRRYREVADRFLRVTFMDEGMEMLNNHVLNSFTAPIVKDLMSNYFQQKTTVYKRVRLLLT 407
Query: 1167 EGFN------DFSANXSPNQLRDNSAWFFADGDSITANDIRSWMGKFHKITNVAKHAARM 1006
EGF+ F A S NQLRD SAWFFA+ + T IR WMG+F NVAKHAARM
Sbjct: 408 EGFHLCGRKYSFLA-FSSNQLRDKSAWFFAEDRNTTVEGIRKWMGRFTS-KNVAKHAARM 465
Query: 1005 GQCFSSTYSTVDVGRMQFREIE----DIERNGYTFSDGIGKISPDLALEVTRRLQLNINP 838
GQCFSSTY+TV MQ E++ DI N Y FSDGIGKI+PDLALEV RLQL NP
Sbjct: 466 GQCFSSTYATVT---MQLDEVDENFDDIVHNDYIFSDGIGKITPDLALEVAERLQLTDNP 522
Query: 837 PSAFQIRFGGYKGVVSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNRE 658
PSA+QIR+ G+KGV++ W G +L LRPSM KF+ H LE++SWT+F P +LNR+
Sbjct: 523 PSAYQIRYAGFKGVIAVWQGN-GDGIRLSLRPSMRKFESSHSVLEVVSWTKFQPGFLNRQ 581
Query: 657 IITLLSALGVKDKVFRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGF 478
IITLLS+L V D +F +Q +M+S L +L +VAF++LTS NTAA+M+ AGF
Sbjct: 582 IITLLSSLNVPDAIFSQMQETMLSNLNNILSDRDVAFEVLTSCAED--GNTAALMLSAGF 639
Query: 477 TPKKEPHLKDLLTAIRAVQLDDLLRKNRIFVPKGRWLIGCLDEVGKLEYGKCFIRASTTS 298
P EPHLK +L AIR+ QL DLL K RIFVPKGRWL+GCLDE+G LE G+CFIRAS S
Sbjct: 640 EPGSEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLEQGQCFIRASVPS 699
Query: 297 LKDCFVKHGCTFDEQSNDPTVVTGKVIIAKNPCLHPGDIRILEAVDIPELYHMVDCLVFP 118
L F KHG F + ++ G V+IAKNPCLHPGD+RILEAVD+PEL+H+VDCLVFP
Sbjct: 700 LNSYFKKHGSRFSSADRNTEIIVGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFP 759
Query: 117 QKGSRPHPNEASGSDLDGDTYFVSWEPSLIPPRGESWDP 1
QKG RPH NEASGSDLDGD YFV+W+ LIPP +SW+P
Sbjct: 760 QKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNP 798
>CAR47810.1 RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 578 bits (1491), Expect = 0.0
Identities = 320/625 (51%), Positives = 407/625 (65%), Gaps = 34/625 (5%)
Frame = -2
Query: 1773 LSPRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTIPNQKWIR 1597
+ PR G + E+A YFS + VE LRV+ E V FF N+ I
Sbjct: 273 IRPRNGPSFEKAMAYFSFRRV--PMVEMCNRKMLRVKDEPDFGVSMSDPFFCFQNEG-IS 329
Query: 1596 FESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSYGNQIYDPCVEL 1417
F+ +L+N ++HKGI+N H + + F+ +L + + AL+HM SY + D +L
Sbjct: 330 FKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSRQEEV--NLAALKHMFSYKWPVNDAIQKL 387
Query: 1416 GRI----LQQYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRVLRRYRSVSDRF 1249
I L+ + L+ D +EVRRL+ITPTKAYC PP +ELSNRVLR Y+ V+DRF
Sbjct: 388 VGIQKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRF 447
Query: 1248 LRVCFLDESMDKLGSGALSVNVAPVAKE----------------------GFN------D 1153
LRV F+DE M L L+ A + +E GF+
Sbjct: 448 LRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYS 507
Query: 1152 FSANXSPNQLRDNSAWFFADGDSITANDIRSWMGKFHKITNVAKHAARMGQCFSSTYSTV 973
F A S NQLRD SAWFFA+ I I SWMG+F NVAK AARMGQCFSSTY+TV
Sbjct: 508 FLA-FSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATV 565
Query: 972 DVGRMQFR-EIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAFQIRFGGYKGV 796
+V + E+ DIERNGY FSDGIG IS DLA+EV +L LN+NPPSA+QIR+ GYKGV
Sbjct: 566 EVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLNVNPPSAYQIRYAGYKGV 625
Query: 795 VSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITLLSALGVKDKV 616
V+ WP + L LRPSM KFD +H LEI SWTRF P +LNR+I+TLLS+L VKD +
Sbjct: 626 VACWPTKND-GILLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGI 684
Query: 615 FRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKKEPHLKDLLTA 436
F ++Q M+S L +ML +VAFD++T+SC+ NTAA+M+ AGF P+ EPHL+ +L++
Sbjct: 685 FWEMQKEMISGLDKMLVDSDVAFDVITASCAEA-GNTAALMLSAGFKPQSEPHLRGMLSS 743
Query: 435 IRAVQLDDLLRKNRIFVPKGRWLIGCLDEVGKLEYGKCFIRASTTSLKDCFVKHGCTFDE 256
IRA QL DL K RIFVP GRWL+GCLDE+G+LE G+CFI+ S+ SL++CFVKHG F +
Sbjct: 744 IRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSD 803
Query: 255 QSNDPTVVTGKVIIAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGSRPHPNEASGS 76
+ VV G V+IAKNPCLHPGD+RILEAVD+P L H+ DCLVFPQKG RPH NEASGS
Sbjct: 804 IKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGS 863
Query: 75 DLDGDTYFVSWEPSLIPPRGESWDP 1
DLDGD YFV+W+ +LIPP +SW P
Sbjct: 864 DLDGDLYFVTWDENLIPPSKKSWIP 888
>AAU21242.1 putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
Length = 1197
Score = 578 bits (1490), Expect = 0.0
Identities = 319/625 (51%), Positives = 408/625 (65%), Gaps = 34/625 (5%)
Frame = -2
Query: 1773 LSPRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTIPNQKWIR 1597
+ PR G + E+A YFS + + VE LRVR E V FF N+ I
Sbjct: 273 IRPRNGPSFEKAMAYFSFHRV--PMVEMCNRKMLRVRDEPDFGVSMSDPFFCFQNEG-IS 329
Query: 1596 FESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSYGNQIYDPCVEL 1417
F+ +L+N ++HKGI+N H + + F+ +L + + AL+HM SY + D +L
Sbjct: 330 FKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSHQEEV--NLAALKHMFSYKWPVNDAIQKL 387
Query: 1416 GRI----LQQYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRVLRRYRSVSDRF 1249
I L+ + L+ D +EVRRL+ITPTKAYC PP +ELSNRVLR Y+ V+DRF
Sbjct: 388 VGIQKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRF 447
Query: 1248 LRVCFLDESMDKLGSGALSVNVAPVAKE----------------------GFN------D 1153
LRV F+DE M L L+ A + +E GF+
Sbjct: 448 LRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYS 507
Query: 1152 FSANXSPNQLRDNSAWFFADGDSITANDIRSWMGKFHKITNVAKHAARMGQCFSSTYSTV 973
F A S NQLRD SAWFFA+ I I SWMG+F NVAK AARMGQCFSSTY+TV
Sbjct: 508 FLA-FSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATV 565
Query: 972 DVGRMQFR-EIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAFQIRFGGYKGV 796
+V + E+ DIERNGY FSDGIG IS DLALEV +L L++NPPSA+QIR+ G KGV
Sbjct: 566 EVPSSEVNSELPDIERNGYVFSDGIGMISADLALEVAEKLHLSVNPPSAYQIRYAGCKGV 625
Query: 795 VSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITLLSALGVKDKV 616
V+ WP + L LRPSM KFD +H LEI SWTRF P +LNR+I+TLLS+L VKD +
Sbjct: 626 VACWPTKND-GILLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGI 684
Query: 615 FRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKKEPHLKDLLTA 436
F ++Q M+S L +ML +VAFD++T+SC+ NTAA+M+ AGF P+ EPHL+ +L++
Sbjct: 685 FWEMQKEMISGLNKMLVDSDVAFDVITASCAEA-GNTAAIMLSAGFKPQSEPHLRGMLSS 743
Query: 435 IRAVQLDDLLRKNRIFVPKGRWLIGCLDEVGKLEYGKCFIRASTTSLKDCFVKHGCTFDE 256
IRA QL DL K RIFVP GRWL+GCLDE+G+LE G+CFI+ S+ SL++CF+KHG F +
Sbjct: 744 IRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFIKHGPKFSD 803
Query: 255 QSNDPTVVTGKVIIAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGSRPHPNEASGS 76
+ VV G V+IAKNPCLHPGD+RILEAVD+P L+H+ DCLVFPQKG RPH NEASGS
Sbjct: 804 IKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGS 863
Query: 75 DLDGDTYFVSWEPSLIPPRGESWDP 1
DLDGD YFV+W+ +LIPP +SW P
Sbjct: 864 DLDGDLYFVTWDENLIPPSKKSWIP 888
>XP_019260524.1 PREDICTED: RNA-dependent RNA polymerase 6 [Nicotiana attenuata]
OIT39130.1 rna-dependent rna polymerase 6 [Nicotiana
attenuata]
Length = 1197
Score = 578 bits (1489), Expect = 0.0
Identities = 318/625 (50%), Positives = 409/625 (65%), Gaps = 34/625 (5%)
Frame = -2
Query: 1773 LSPRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTIPNQKWIR 1597
+ PR G + E+A YFS + + VE LRVR E V FF N+ I
Sbjct: 273 IRPRNGPSFEKAMAYFSFHRV--PMVEMCNRKMLRVRDEPDFGVSMSDPFFCFQNEG-IS 329
Query: 1596 FESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSYGNQIYDPCVEL 1417
F+ +L+N ++HKGI+N H + + F+ +L + + AL+HM SY + D +L
Sbjct: 330 FKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSHQEEV--NLAALKHMFSYKWPVNDAIQKL 387
Query: 1416 GRI----LQQYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRVLRRYRSVSDRF 1249
I L+ + L+ D +EVRRL+ITPTKAYC PP +ELSNRVLR Y+ V+DRF
Sbjct: 388 VGIRKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRF 447
Query: 1248 LRVCFLDESMDKLGSGALSVNVAPVAKE----------------------GFN------D 1153
LRV F+DE M L L+ A + +E GF+
Sbjct: 448 LRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYS 507
Query: 1152 FSANXSPNQLRDNSAWFFADGDSITANDIRSWMGKFHKITNVAKHAARMGQCFSSTYSTV 973
F A S NQLRD SAWFFA+ I I SWMG+F NVAK AARMGQCFSSTY+TV
Sbjct: 508 FLA-FSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATV 565
Query: 972 DVGRMQFR-EIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAFQIRFGGYKGV 796
+V + E+ DIERNGY FSDGIG IS DLA+EV +L L++NPPSA+QIR+ G KGV
Sbjct: 566 EVPSSEVNSELPDIERNGYVFSDGIGMISADLAVEVAEKLHLSVNPPSAYQIRYAGCKGV 625
Query: 795 VSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITLLSALGVKDKV 616
V+ WP + +L LRPSM KFD +H LEI SWTRF P +LNR+I+TLLS+L VKD +
Sbjct: 626 VACWPTKND-GIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGI 684
Query: 615 FRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKKEPHLKDLLTA 436
F ++Q M+S L +ML +VAFD++T+SC+ NTAA+M+ AGF P+ EPHL+ +L++
Sbjct: 685 FWEMQKEMISGLDKMLVDSDVAFDVITASCAEA-GNTAAIMLSAGFKPQSEPHLRGMLSS 743
Query: 435 IRAVQLDDLLRKNRIFVPKGRWLIGCLDEVGKLEYGKCFIRASTTSLKDCFVKHGCTFDE 256
IRA QL DL K RIFVP GRWL+GCLDE+G+LE G+CFI+ S+ SL++CF+KHG F +
Sbjct: 744 IRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFIKHGPKFSD 803
Query: 255 QSNDPTVVTGKVIIAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGSRPHPNEASGS 76
+ VV G V+IAKNPCLHPGD+RILEAVD+P L+H+ DCLVFPQKG RPH NEASGS
Sbjct: 804 IKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGS 863
Query: 75 DLDGDTYFVSWEPSLIPPRGESWDP 1
DLDGD YFV+W+ +LIPP +SW P
Sbjct: 864 DLDGDLYFVTWDENLIPPSKKSWIP 888
>XP_009758053.1 PREDICTED: RNA-dependent RNA polymerase 6 [Nicotiana sylvestris]
Length = 1197
Score = 578 bits (1489), Expect = 0.0
Identities = 317/625 (50%), Positives = 409/625 (65%), Gaps = 34/625 (5%)
Frame = -2
Query: 1773 LSPRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTIPNQKWIR 1597
+ PR G + E+A YFS + + VE LRVR E V FF N+ I
Sbjct: 273 IRPRNGPSFEKAMAYFSFHRV--PMVEMCNRKMLRVRDEPDFGVSMSDPFFCFQNEG-IS 329
Query: 1596 FESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSYGNQIYDPCVEL 1417
F+ +L+N ++HKGI+N H + + F+ +L + + AL+HM SY + D +L
Sbjct: 330 FKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSRQEEV--NLAALKHMFSYKWPVNDAIQKL 387
Query: 1416 GRI----LQQYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRVLRRYRSVSDRF 1249
I ++ + L+ D +EVRRL+ITPTKAYC PP +ELSNRVLR Y+ V+DRF
Sbjct: 388 VGIQKWLMKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRF 447
Query: 1248 LRVCFLDESMDKLGSGALSVNVAPVAKE----------------------GFN------D 1153
LRV F+DE M L L+ A + +E GF+
Sbjct: 448 LRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYS 507
Query: 1152 FSANXSPNQLRDNSAWFFADGDSITANDIRSWMGKFHKITNVAKHAARMGQCFSSTYSTV 973
F A S NQLRD SAWFFA+ I I SWMG+F NVAK AARMGQCFSSTY+TV
Sbjct: 508 FLA-FSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATV 565
Query: 972 DVGRMQFR-EIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAFQIRFGGYKGV 796
+V + E+ DIERNGY FSDGIG IS DLA+EV +L L++NPPSA+QIR+ G KGV
Sbjct: 566 EVPSREVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLSVNPPSAYQIRYAGCKGV 625
Query: 795 VSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITLLSALGVKDKV 616
V+ WP + +L LRPSM KFD +H LEI SWTRF P +LNR+I+TLLS+L VKD +
Sbjct: 626 VACWPTKND-GIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGI 684
Query: 615 FRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKKEPHLKDLLTA 436
F ++Q M+S L +ML +VAFD++T+SC+ NTAA+M+ AGF P+ EPHL+ +L++
Sbjct: 685 FWEMQKEMISGLDKMLVDSDVAFDVITASCAEA-GNTAAIMLSAGFKPQSEPHLRGMLSS 743
Query: 435 IRAVQLDDLLRKNRIFVPKGRWLIGCLDEVGKLEYGKCFIRASTTSLKDCFVKHGCTFDE 256
IRA QL DL K RIFVP GRWL+GCLDE+G+LE G+CFI+ S+ SL++CF+KHG F +
Sbjct: 744 IRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFIKHGPKFSD 803
Query: 255 QSNDPTVVTGKVIIAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGSRPHPNEASGS 76
+ VV G V+IAKNPCLHPGD+RILEAVD+P L+H+ DCLVFPQKG RPH NEASGS
Sbjct: 804 IKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGS 863
Query: 75 DLDGDTYFVSWEPSLIPPRGESWDP 1
DLDGD YFV+W+ +LIPP +SW P
Sbjct: 864 DLDGDLYFVTWDENLIPPSKKSWIP 888
>ACA13601.1 RNA-dependent RNA polymerase [Nicotiana attenuata]
Length = 1197
Score = 578 bits (1489), Expect = 0.0
Identities = 318/625 (50%), Positives = 409/625 (65%), Gaps = 34/625 (5%)
Frame = -2
Query: 1773 LSPRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTIPNQKWIR 1597
+ PR G + E+A YFS + + VE LRVR E V FF N+ I
Sbjct: 273 IRPRNGPSFEKAMAYFSFHRV--PMVEMCNRKMLRVRDEPDFGVSMSDPFFCFQNEG-IS 329
Query: 1596 FESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSYGNQIYDPCVEL 1417
F+ +L+N ++HKGI+N H + + F+ +L + + AL+HM SY + D +L
Sbjct: 330 FKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSHQEEV--NLAALKHMFSYKWPVNDAIQKL 387
Query: 1416 GRI----LQQYRHLKAPFIGPDTMEVRRLIITPTKAYCFPPEIELSNRVLRRYRSVSDRF 1249
I L+ + L+ D +EVRRL+ITPTKAYC PP +ELSNRVLR Y+ V+DRF
Sbjct: 388 VGIRKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRF 447
Query: 1248 LRVCFLDESMDKLGSGALSVNVAPVAKE----------------------GFN------D 1153
LRV F+DE M L L+ A + +E GF+
Sbjct: 448 LRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYS 507
Query: 1152 FSANXSPNQLRDNSAWFFADGDSITANDIRSWMGKFHKITNVAKHAARMGQCFSSTYSTV 973
F A S NQLRD SAWFFA+ I I SWMG+F NVAK AARMGQCFSSTY+TV
Sbjct: 508 FLA-FSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFSSTYATV 565
Query: 972 DVGRMQFR-EIEDIERNGYTFSDGIGKISPDLALEVTRRLQLNINPPSAFQIRFGGYKGV 796
+V + E+ DIERNGY FSDGIG IS DLA+EV +L L++NPPSA+QIR+ G KGV
Sbjct: 566 EVPSSEVNSELPDIERNGYVFSDGIGMISADLAVEVAEKLHLSVNPPSAYQIRYAGCKGV 625
Query: 795 VSTWPIEPGMNYKLLLRPSMSKFDCDHRTLEIISWTRFLPAYLNREIITLLSALGVKDKV 616
V+ WP + +L LRPSM KFD +H LEI SWTRF P +LNR+I+TLLS+L VKD +
Sbjct: 626 VACWPTKND-GIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGI 684
Query: 615 FRDLQNSMVSRLREMLEKDEVAFDILTSSCSGVLPNTAAVMIGAGFTPKKEPHLKDLLTA 436
F ++Q M+S L +ML +VAFD++T+SC+ NTAA+M+ AGF P+ EPHL+ +L++
Sbjct: 685 FWEMQKEMISGLDKMLVDSDVAFDVITASCAEA-GNTAAIMLSAGFKPQSEPHLRGMLSS 743
Query: 435 IRAVQLDDLLRKNRIFVPKGRWLIGCLDEVGKLEYGKCFIRASTTSLKDCFVKHGCTFDE 256
IRA QL DL K RIFVP GRWL+GCLDE+G+LE G+CFI+ S+ SL++CF+KHG F +
Sbjct: 744 IRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFIKHGPKFSD 803
Query: 255 QSNDPTVVTGKVIIAKNPCLHPGDIRILEAVDIPELYHMVDCLVFPQKGSRPHPNEASGS 76
+ VV G V+IAKNPCLHPGD+RILEAVD+P L+H+ DCLVFPQKG RPH NEASGS
Sbjct: 804 IKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGS 863
Query: 75 DLDGDTYFVSWEPSLIPPRGESWDP 1
DLDGD YFV+W+ +LIPP +SW P
Sbjct: 864 DLDGDLYFVTWDENLIPPSKKSWIP 888