BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra29_contig00006853
         (2871 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ABK25455.1 unknown [Picea sitchensis]                                 786   0.0  
OAY68224.1 Replication factor C subunit 1 [Ananas comosus]            689   0.0  
XP_020100068.1 replication factor C subunit 1 [Ananas comosus]        689   0.0  
XP_008790189.1 PREDICTED: replication factor C subunit 1 isoform...   678   0.0  
JAT42564.1 Replication factor C subunit 1 [Anthurium amnicola] J...   677   0.0  
XP_020166115.1 replication factor C subunit 1 [Aegilops tauschii...   674   0.0  
XP_017985217.1 PREDICTED: replication factor C subunit 1 [Theobr...   672   0.0  
EOY19345.1 Replication factor C subunit 1 [Theobroma cacao]           672   0.0  
BAC76085.1 replication factor C 110 kDa subunit [Oryza sativa Ja...   672   0.0  
XP_015617630.1 PREDICTED: replication factor C subunit 1 [Oryza ...   672   0.0  
EEC68391.1 hypothetical protein OsI_36544 [Oryza sativa Indica G...   672   0.0  
XP_010237623.1 PREDICTED: replication factor C subunit 1 [Brachy...   665   0.0  
XP_012855762.1 PREDICTED: replication factor C subunit 1 [Erythr...   664   0.0  
XP_010917922.1 PREDICTED: replication factor C subunit 1 isoform...   686   0.0  
XP_010917920.1 PREDICTED: replication factor C subunit 1 isoform...   686   0.0  
XP_012459306.1 PREDICTED: replication factor C subunit 1 [Gossyp...   667   0.0  
XP_017615387.1 PREDICTED: replication factor C subunit 1 [Gossyp...   667   0.0  
XP_008670813.1 PREDICTED: replication factor C subunit 1 [Zea ma...   665   0.0  
ONM26987.1 Replication factor C subunit 1 [Zea mays]                  665   0.0  
XP_016714165.1 PREDICTED: replication factor C subunit 1 [Gossyp...   665   0.0  

>ABK25455.1 unknown [Picea sitchensis]
          Length = 550

 Score =  786 bits (2029), Expect = 0.0
 Identities = 406/547 (74%), Positives = 462/547 (84%), Gaps = 3/547 (0%)
 Frame = -3

Query: 2182 MWTEKYRPKTPNDIVGNQTIVKQLHEWLANWENEHLNTGEKGXXXKKGNKRTGAGNKSSN 2003
            MWTEKYRPKTP+DI+GNQ+IVK +H+WLA+W+ +HL+T  K     KG KR G G+ SSN
Sbjct: 1    MWTEKYRPKTPDDIIGNQSIVKNIHDWLAHWDEQHLHTEGK---ESKGKKR-GGGSVSSN 56

Query: 2002 TSKKAVIMSGPPGIGKTTAARLVSQMLGFETIEVNASDSRGKADSKIVKGISGSTANSIK 1823
             SKKAV++SG PGIGKTT+ARL+SQMLGFETIEVNASDSRGKADSKI +G++GSTANSIK
Sbjct: 57   ASKKAVLLSGTPGIGKTTSARLISQMLGFETIEVNASDSRGKADSKIERGMAGSTANSIK 116

Query: 1822 EMITNATIHRG-LTNGGK--KSVLIMDEVDGMSGGDRGGVSDLXXXXXXXXXXXXXXCND 1652
            EM++N ++ RG   +G K  KSVLIMDEVDGMSGGDRGGVSDL              CND
Sbjct: 117  EMVSNESLSRGSFMDGSKRGKSVLIMDEVDGMSGGDRGGVSDLIASIKISKIPIICICND 176

Query: 1651 RYSQKLKSLMNSCLPLNFRKPTKQQMAKRLRQVAELEGIKVDEAALEELGERVNGDMRMA 1472
            RY+QKLKSL+N CLPLNFRKPTKQQMAKRL QVAELEG+KVDEAAL ELGERVNGDMRMA
Sbjct: 177  RYNQKLKSLVNYCLPLNFRKPTKQQMAKRLCQVAELEGLKVDEAALLELGERVNGDMRMA 236

Query: 1471 LNQLQYMSLSFSAIKYADIKSRLKDGGKDEDITPFTAANKLLGVESSRLIMDEKMDLCMS 1292
            LNQLQYMSLS S +KYADIK+RL+   KDEDITPFTA +KLLG E  RL MDE+MDL MS
Sbjct: 237  LNQLQYMSLSSSILKYADIKARLQGSKKDEDITPFTAVDKLLGYEGGRLRMDERMDLSMS 296

Query: 1291 DPDLVPLLIQENYLNYKPNAAGRDVDGSRRMDLISRAADSIADGDIINKQIRRYQQWQHS 1112
            DPDLVPLLIQENYLNYKP+AA RD DGS RMDLI+RAA+SIADGDIIN QIRRY+QWQHS
Sbjct: 297  DPDLVPLLIQENYLNYKPSAASRDGDGSLRMDLIARAAESIADGDIINVQIRRYRQWQHS 356

Query: 1111 QMGAFASSIIPSAFIHGYRETFVQGEQNFNRFGAWLGKNSTFGKNTRLLSDVHVHILASS 932
            QMGAFASSIIP+AF+HG RE  VQGE+NFNRFG WLGKNST GKN RLL DVHVH LAS 
Sbjct: 357  QMGAFASSIIPAAFMHGPREVLVQGERNFNRFGGWLGKNSTLGKNNRLLEDVHVHFLASG 416

Query: 931  ACELSRENLRLDYLSVLLTRLTNPLKTLPKDEAVQAVLDFMDEYSLSQEDFDTIVELSKF 752
             CE +R  LRLDYL +L+ +LT PL+TLPK+EAVQ V++FM+EYSL+QEDFDTIVELSKF
Sbjct: 417  TCEPTRGALRLDYLPLLVLQLTRPLQTLPKEEAVQTVVEFMNEYSLNQEDFDTIVELSKF 476

Query: 751  QGHLDPLKSIPPAVKAALTKGYKQNEQSRRVRTADLIPALQIPGQKKAPKTKRVAKLLNT 572
            QGH DPL  I PAVKAALTK YKQNE+S RVR++DL+PA+ +PGQKK PK+KRVA LL T
Sbjct: 477  QGHPDPLDGIQPAVKAALTKAYKQNEKSHRVRSSDLLPAILLPGQKKTPKSKRVASLLAT 536

Query: 571  DEGEFPL 551
             + E+PL
Sbjct: 537  VD-EYPL 542


>OAY68224.1 Replication factor C subunit 1 [Ananas comosus]
          Length = 971

 Score =  689 bits (1778), Expect(2) = 0.0
 Identities = 366/666 (54%), Positives = 463/666 (69%), Gaps = 5/666 (0%)
 Frame = -3

Query: 2290 RSHLIRXXNARNGKMNERSVQYNSNKALQTSKAETAMWTEKYRPKTPNDIVGNQTIVKQL 2111
            R + +     +  +++ ++      +  QT    + +WTEKYRPK PNDI+GNQ++VKQL
Sbjct: 321  RDNQVSPAGKKGSEISVKATASLDKRKAQTRDRSSLIWTEKYRPKVPNDIIGNQSLVKQL 380

Query: 2110 HEWLANWENEHLNTGEKGXXXKKGNKRTGAGNKSSNTSKKAVIMSGPPGIGKTTAARLVS 1931
            H+WL +W ++ L TG+KG   K+G+          + SKKA+++SG PGIGK+T+A+LVS
Sbjct: 381  HDWLTSWNDQFLQTGQKGKSKKQGD----------SGSKKALLISGSPGIGKSTSAKLVS 430

Query: 1930 QMLGFETIEVNASDSRGKADSKIVKGISGSTANSIKEMITNATI-HRGLTNGGKKSVLIM 1754
            QMLGF+ IEVNASDSRGKAD+KIVKGI GSTANSIKE+++N ++ +    +   KSVLIM
Sbjct: 431  QMLGFQAIEVNASDSRGKADAKIVKGIGGSTANSIKELVSNESLSYNKEWSKHPKSVLIM 490

Query: 1753 DEVDGMSGGDRGGVSDLXXXXXXXXXXXXXXCNDRYSQKLKSLMNSCLPLNFRKPTKQQM 1574
            DEVDGMS GDRGGV+DL              CNDRYSQKLKSL+N C+ LNFRKPTKQQM
Sbjct: 491  DEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCMLLNFRKPTKQQM 550

Query: 1573 AKRLRQVAELEGIKVDEAALEELGERVNGDMRMALNQLQYMSLSFSAIKYADIKSRLKDG 1394
            AKRL Q+A  EG++V+E ALEEL +RVNGDMRMALNQLQYMSL+ S IKY DI+ RL + 
Sbjct: 551  AKRLIQIASAEGLQVNEIALEELADRVNGDMRMALNQLQYMSLTESVIKYDDIRERLLNS 610

Query: 1393 GKDEDITPFTAANKLLGVESSRLIMDEKMDLCMSDPDLVPLLIQENYLNYKPNAAGRDVD 1214
             KDEDI+PFTA +KL G    +L MDE++DL MSDPDLVPL+IQENY+NY+P   G+D +
Sbjct: 611  SKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLIIQENYINYRPTTIGKDEN 670

Query: 1213 GSRRMDLISRAADSIADGDIINKQIRRYQQWQHSQMGAFASSIIPSAFIHGYRETFVQGE 1034
            G +RM L+++AA+SIADGDI+N QIRRY+QWQ SQ  +FASSIIP+A +HG RET   GE
Sbjct: 671  GVKRMKLLAQAAESIADGDIVNVQIRRYRQWQLSQASSFASSIIPAALMHGNRETLEPGE 730

Query: 1033 QNFNRFGAWLGKNSTFGKNTRLLSDVHVHILASSACELSRENLRLDYLSVLLTRLTNPLK 854
            +NFNRFG W GKNST GKN RLL DVHVHILAS    L+RE LR+DY ++LL +LT+PL+
Sbjct: 731  RNFNRFGGWFGKNSTMGKNLRLLEDVHVHILASQEANLNRETLRVDYFTLLLRQLTHPLR 790

Query: 853  TLPKDEAVQAVLDFMDEYSLSQEDFDTIVELSKFQGHLDPLKSIPPAVKAALTKGYKQNE 674
             + KD AV+ V++FMD YSL+QEDFDT++ELSKFQGH +P+  IPPAVKAALTK YKQ  
Sbjct: 791  AMSKDVAVEKVVEFMDNYSLTQEDFDTVLELSKFQGHPNPMDGIPPAVKAALTKAYKQGS 850

Query: 673  QSRRVRTADLIPALQIPGQKKAPKTKRVAKLLNTDEGEFPL-NXXXXXXXXXXXXXXXXX 497
             SR VR ADLI    +PG KKAPK KR+A +L   E + P  N                 
Sbjct: 851  NSRVVRAADLI---TLPGLKKAPK-KRIAAILEPVENDLPKENGDSLVEGEEENTSDAED 906

Query: 496  XXXXXXQG---IKLSLEEDKPKGLEIELDIKGREXXXXXXXXXXXXXSNNGRAKAGAEAK 326
                   G    +L L+ DK KG+++ LD+K  E               N   K  A++ 
Sbjct: 907  NDELEIIGDSKPQLDLQSDKAKGIQVHLDLKSNEKSKGKKTPASKSRVPNSADKP-AKSS 965

Query: 325  GVKRKR 308
              KRKR
Sbjct: 966  SAKRKR 971



 Score =  170 bits (431), Expect(2) = 0.0
 Identities = 83/94 (88%), Positives = 89/94 (94%)
 Frame = -2

Query: 2588 PPHKGEKEVPQGAENCLSGLTFVISGTLDSLEREEAEDLIKSHGGRITTSVSKKTSYLLA 2409
            PPHKGEKEVP+GA  CL+GLTFVISGTLDSLEREEAEDLIK HGGRIT SVSKKTS+LLA
Sbjct: 197  PPHKGEKEVPEGAPECLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSVSKKTSFLLA 256

Query: 2408 DEDIGGRKSQKAKELGVKFLTEDGLFEMIRKSKP 2307
            DEDIGGRKS KAKELG++FLTEDGLF+MIRKSKP
Sbjct: 257  DEDIGGRKSSKAKELGIRFLTEDGLFDMIRKSKP 290


>XP_020100068.1 replication factor C subunit 1 [Ananas comosus]
          Length = 969

 Score =  689 bits (1778), Expect(2) = 0.0
 Identities = 366/666 (54%), Positives = 463/666 (69%), Gaps = 5/666 (0%)
 Frame = -3

Query: 2290 RSHLIRXXNARNGKMNERSVQYNSNKALQTSKAETAMWTEKYRPKTPNDIVGNQTIVKQL 2111
            R + +     +  +++ ++      +  QT    + +WTEKYRPK PNDI+GNQ++VKQL
Sbjct: 319  RDNQVSPAGKKGSEISVKATASLDKRKAQTRDRSSLIWTEKYRPKVPNDIIGNQSLVKQL 378

Query: 2110 HEWLANWENEHLNTGEKGXXXKKGNKRTGAGNKSSNTSKKAVIMSGPPGIGKTTAARLVS 1931
            H+WL +W ++ L TG+KG   K+G+          + SKKA+++SG PGIGK+T+A+LVS
Sbjct: 379  HDWLTSWNDQFLQTGQKGKSKKQGD----------SGSKKALLISGSPGIGKSTSAKLVS 428

Query: 1930 QMLGFETIEVNASDSRGKADSKIVKGISGSTANSIKEMITNATI-HRGLTNGGKKSVLIM 1754
            QMLGF+ IEVNASDSRGKAD+KIVKGI GSTANSIKE+++N ++ +    +   KSVLIM
Sbjct: 429  QMLGFQAIEVNASDSRGKADAKIVKGIGGSTANSIKELVSNESLSYNKEWSKHPKSVLIM 488

Query: 1753 DEVDGMSGGDRGGVSDLXXXXXXXXXXXXXXCNDRYSQKLKSLMNSCLPLNFRKPTKQQM 1574
            DEVDGMS GDRGGV+DL              CNDRYSQKLKSL+N C+ LNFRKPTKQQM
Sbjct: 489  DEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCMLLNFRKPTKQQM 548

Query: 1573 AKRLRQVAELEGIKVDEAALEELGERVNGDMRMALNQLQYMSLSFSAIKYADIKSRLKDG 1394
            AKRL Q+A  EG++V+E ALEEL +RVNGDMRMALNQLQYMSL+ S IKY DI+ RL + 
Sbjct: 549  AKRLIQIASAEGLQVNEIALEELADRVNGDMRMALNQLQYMSLTESVIKYDDIRERLLNS 608

Query: 1393 GKDEDITPFTAANKLLGVESSRLIMDEKMDLCMSDPDLVPLLIQENYLNYKPNAAGRDVD 1214
             KDEDI+PFTA +KL G    +L MDE++DL MSDPDLVPL+IQENY+NY+P   G+D +
Sbjct: 609  SKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLIIQENYINYRPTTIGKDEN 668

Query: 1213 GSRRMDLISRAADSIADGDIINKQIRRYQQWQHSQMGAFASSIIPSAFIHGYRETFVQGE 1034
            G +RM L+++AA+SIADGDI+N QIRRY+QWQ SQ  +FASSIIP+A +HG RET   GE
Sbjct: 669  GVKRMKLLAQAAESIADGDIVNVQIRRYRQWQLSQASSFASSIIPAALMHGNRETLEPGE 728

Query: 1033 QNFNRFGAWLGKNSTFGKNTRLLSDVHVHILASSACELSRENLRLDYLSVLLTRLTNPLK 854
            +NFNRFG W GKNST GKN RLL DVHVHILAS    L+RE LR+DY ++LL +LT+PL+
Sbjct: 729  RNFNRFGGWFGKNSTMGKNLRLLEDVHVHILASQEANLNRETLRVDYFTLLLRQLTHPLR 788

Query: 853  TLPKDEAVQAVLDFMDEYSLSQEDFDTIVELSKFQGHLDPLKSIPPAVKAALTKGYKQNE 674
             + KD AV+ V++FMD YSL+QEDFDT++ELSKFQGH +P+  IPPAVKAALTK YKQ  
Sbjct: 789  AMSKDVAVEKVVEFMDNYSLTQEDFDTVLELSKFQGHPNPMDGIPPAVKAALTKAYKQGS 848

Query: 673  QSRRVRTADLIPALQIPGQKKAPKTKRVAKLLNTDEGEFPL-NXXXXXXXXXXXXXXXXX 497
             SR VR ADLI    +PG KKAPK KR+A +L   E + P  N                 
Sbjct: 849  NSRVVRAADLI---TLPGLKKAPK-KRIAAILEPVENDLPKENGDSLVEGEEENTSDAED 904

Query: 496  XXXXXXQG---IKLSLEEDKPKGLEIELDIKGREXXXXXXXXXXXXXSNNGRAKAGAEAK 326
                   G    +L L+ DK KG+++ LD+K  E               N   K  A++ 
Sbjct: 905  NDELEIIGDSKPQLDLQSDKAKGIQVHLDLKSNEKSKGKKTPASKSRVPNSADKP-AKSS 963

Query: 325  GVKRKR 308
              KRKR
Sbjct: 964  SAKRKR 969



 Score =  170 bits (431), Expect(2) = 0.0
 Identities = 83/94 (88%), Positives = 89/94 (94%)
 Frame = -2

Query: 2588 PPHKGEKEVPQGAENCLSGLTFVISGTLDSLEREEAEDLIKSHGGRITTSVSKKTSYLLA 2409
            PPHKGEKEVP+GA  CL+GLTFVISGTLDSLEREEAEDLIK HGGRIT SVSKKTS+LLA
Sbjct: 195  PPHKGEKEVPEGAPECLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSVSKKTSFLLA 254

Query: 2408 DEDIGGRKSQKAKELGVKFLTEDGLFEMIRKSKP 2307
            DEDIGGRKS KAKELG++FLTEDGLF+MIRKSKP
Sbjct: 255  DEDIGGRKSSKAKELGIRFLTEDGLFDMIRKSKP 288


>XP_008790189.1 PREDICTED: replication factor C subunit 1 isoform X3 [Phoenix
            dactylifera]
          Length = 980

 Score =  678 bits (1750), Expect(2) = 0.0
 Identities = 358/635 (56%), Positives = 457/635 (71%), Gaps = 9/635 (1%)
 Frame = -3

Query: 2209 LQTSKAETAMWTEKYRPKTPNDIVGNQTIVKQLHEWLANWENEHLNTGEKGXXXKKGNKR 2030
            +Q++   +  WT KYRPK P+DI+GNQ++VKQLH+WL +W  + L+TG+KG    KG K+
Sbjct: 350  IQSADRSSLTWTVKYRPKVPDDIIGNQSLVKQLHDWLVHWNEQFLHTGQKG----KGKKQ 405

Query: 2029 TGAGNKSSNTSKKAVIMSGPPGIGKTTAARLVSQMLGFETIEVNASDSRGKADSKIVKGI 1850
              +G      SKKAV++SG PGIGK+T+A+LVSQMLGF+ IEVNASD+RGKAD+KIVKG+
Sbjct: 406  ADSG------SKKAVLLSGSPGIGKSTSAKLVSQMLGFQAIEVNASDNRGKADTKIVKGV 459

Query: 1849 SGSTANSIKEMITNATIH-RGLTNGGKKSVLIMDEVDGMSGGDRGGVSDLXXXXXXXXXX 1673
             G+T+NSIKE+++N  +  R   +   KSVLIMDEVDGMS GDRGGV+DL          
Sbjct: 460  GGNTSNSIKELVSNEALSCRKNWSKHPKSVLIMDEVDGMSAGDRGGVADLIASIKISKIP 519

Query: 1672 XXXXCNDRYSQKLKSLMNSCLPLNFRKPTKQQMAKRLRQVAELEGIKVDEAALEELGERV 1493
                CNDRYSQKLKSL+N CL LNFRKPTKQQMAKRL+Q+A+ EG++V+E ALEEL  RV
Sbjct: 520  IICICNDRYSQKLKSLVNYCLLLNFRKPTKQQMAKRLKQIADAEGLQVNEIALEELANRV 579

Query: 1492 NGDMRMALNQLQYMSLSFSAIKYADIKSRLKDGGKDEDITPFTAANKLLGVESSRLIMDE 1313
            NGDMRMA+NQLQYMSLS S I Y DI+ RL    KDEDI+PFTA +KL G    +L M+E
Sbjct: 580  NGDMRMAINQLQYMSLSQSVINYDDIRQRLLSSSKDEDISPFTAVDKLFGFNGGKLHMEE 639

Query: 1312 KMDLCMSDPDLVPLLIQENYLNYKPNAAGRDVDGSRRMDLISRAADSIADGDIINKQIRR 1133
            ++DL MSDPDL+PL+IQENY+NY+P++ G+D +G +RM LI+RAA+SI DGDI+N QIRR
Sbjct: 640  RVDLSMSDPDLIPLIIQENYINYRPSSIGKDDNGVKRMSLIARAAESIGDGDIVNVQIRR 699

Query: 1132 YQQWQHSQMGAFASSIIPSAFIHGYRETFVQGEQNFNRFGAWLGKNSTFGKNTRLLSDVH 953
            Y+QWQ SQ G+FAS IIP+A +HG+RET   GE+N+NRFG WLGKNST GKN RLL DVH
Sbjct: 700  YRQWQLSQAGSFASCIIPAALMHGHRETLEPGERNYNRFGGWLGKNSTMGKNLRLLEDVH 759

Query: 952  VHILASSACELSRENLRLDYLSVLLTRLTNPLKTLPKDEAVQAVLDFMDEYSLSQEDFDT 773
            +HILAS    ++RE LR+DY ++LL +LT+PL+ +PK+EAVQ V++ MD YSLSQEDFDT
Sbjct: 760  IHILASQEANMNRETLRVDYFTLLLKQLTDPLRVMPKEEAVQKVVELMDTYSLSQEDFDT 819

Query: 772  IVELSKFQGHLDPLKSIPPAVKAALTKGYKQNEQSRRVRTADLIPALQIPGQKKAPKTKR 593
            IVE+SKF+GH +P++ I PAVKAALTK YKQ   SR VR ADLI    +PG KKAPK KR
Sbjct: 820  IVEMSKFRGHPNPMEGIQPAVKAALTKAYKQGSSSRVVRAADLI---ALPGLKKAPK-KR 875

Query: 592  VAKLLNTDEGEFPLNXXXXXXXXXXXXXXXXXXXXXXXQGI--------KLSLEEDKPKG 437
            +A +L  +  E  L                         GI        +L L  +KPKG
Sbjct: 876  IAAML--EPVETGLAEENGDAVAEGEEEYSSDSEDTDDLGINADGGAKPQLDLLSNKPKG 933

Query: 436  LEIELDIKGREXXXXXXXXXXXXXSNNGRAKAGAE 332
            +++ELD+K                 +NG++K+GA+
Sbjct: 934  VQVELDLK-----------------SNGKSKSGAK 951



 Score =  171 bits (434), Expect(2) = 0.0
 Identities = 83/106 (78%), Positives = 93/106 (87%)
 Frame = -2

Query: 2588 PPHKGEKEVPQGAENCLSGLTFVISGTLDSLEREEAEDLIKSHGGRITTSVSKKTSYLLA 2409
            PPHKGEKEVP+GA  CL+GLTFVISGTLDSLEREEAEDLIK HGGR+T S+SKKTS+LLA
Sbjct: 205  PPHKGEKEVPEGAPECLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSISKKTSFLLA 264

Query: 2408 DEDIGGRKSQKAKELGVKFLTEDGLFEMIRKSKPPQPSAKEPPNKE 2271
            DEDIGGRKS KAKELG+ FLTEDGLF+MIRKSKP +   +E   K+
Sbjct: 265  DEDIGGRKSSKAKELGIPFLTEDGLFDMIRKSKPAKAPVQEEQKKK 310


>JAT42564.1 Replication factor C subunit 1 [Anthurium amnicola] JAT60068.1
            Replication factor C subunit 1 [Anthurium amnicola]
          Length = 962

 Score =  677 bits (1747), Expect(2) = 0.0
 Identities = 361/651 (55%), Positives = 454/651 (69%), Gaps = 3/651 (0%)
 Frame = -3

Query: 2251 KMNERSVQYNSNKALQTSKAETAMWTEKYRPKTPNDIVGNQTIVKQLHEWLANWENEHLN 2072
            K + R+     +K  + S     MWTEKY+PK PNDI+GNQ++VKQLH+WL +W+   L+
Sbjct: 329  KSDARTSVSRVSKKREASYGSLVMWTEKYKPKVPNDIIGNQSLVKQLHDWLNHWDEHFLH 388

Query: 2071 TGEKGXXXKKGNKRTGAGNKSSNTSKKAVIMSGPPGIGKTTAARLVSQMLGFETIEVNAS 1892
            +G+KG    KG ++  A       SKKAV+MSG PGIGKTT+A+LVSQMLGF+ IEVNAS
Sbjct: 389  SGQKG----KGKRQNDA------VSKKAVLMSGSPGIGKTTSAKLVSQMLGFQAIEVNAS 438

Query: 1891 DSRGKADSKIVKGISGSTANSIKEMITNATIHRGLT-NGGKKSVLIMDEVDGMSGGDRGG 1715
            D+RGKAD+KI KGI G TANSIKE+I+N  ++     +   K+VLIMDEVDGMS GDRGG
Sbjct: 439  DNRGKADTKIFKGIGGCTANSIKELISNEALNVSKDWSKSPKAVLIMDEVDGMSAGDRGG 498

Query: 1714 VSDLXXXXXXXXXXXXXXCNDRYSQKLKSLMNSCLPLNFRKPTKQQMAKRLRQVAELEGI 1535
            V+DL              CNDRYSQKLKSL+N CLPLNFRKPTKQQMAKRL Q+A  EGI
Sbjct: 499  VADLIASIKISKIPIICICNDRYSQKLKSLVNYCLPLNFRKPTKQQMAKRLLQIANAEGI 558

Query: 1534 KVDEAALEELGERVNGDMRMALNQLQYMSLSFSAIKYADIKSRLKDGGKDEDITPFTAAN 1355
            +V+E ALEEL +RVNGDMRMA+NQLQYMSLS S IKY D++ RL    KDEDI+PFTA +
Sbjct: 559  QVNEIALEELADRVNGDMRMAINQLQYMSLSLSVIKYDDVRDRLLISAKDEDISPFTAVD 618

Query: 1354 KLLGVESSRLIMDEKMDLCMSDPDLVPLLIQENYLNYKPNAAGRDVDGSRRMDLISRAAD 1175
            KL G    +L MDE++DL MSD DLVPL+IQENY+NY+P AAG+D +G +RM+L++ AA+
Sbjct: 619  KLFGFNGGKLRMDERIDLSMSDLDLVPLIIQENYINYRPIAAGKDDNGVKRMNLLAHAAE 678

Query: 1174 SIADGDIINKQIRRYQQWQHSQMGAFASSIIPSAFIHGYRETFVQGEQNFNRFGAWLGKN 995
            SI DGDI+N QIRRY+QWQ SQ G+ +S IIP++ +HG+RET  QGE+N+NRFG WLGKN
Sbjct: 679  SIGDGDIVNVQIRRYRQWQLSQAGSVSSCIIPASLMHGHRETLEQGERNYNRFGGWLGKN 738

Query: 994  STFGKNTRLLSDVHVHILASSACELSRENLRLDYLSVLLTRLTNPLKTLPKDEAVQAVLD 815
            ST GKN RLL +VHVH++AS    L RE LR+DY S+LL +LT PL+  PKD+AVQ V+D
Sbjct: 739  STMGKNLRLLENVHVHVIASQQSSLDREALRVDYFSLLLKQLTQPLRLSPKDDAVQKVVD 798

Query: 814  FMDEYSLSQEDFDTIVELSKFQGHLDPLKSIPPAVKAALTKGYKQNEQSRRVRTADLIPA 635
            FMD YSLSQEDFD+IVELSKFQGH + L+ + PAVKAALTK YK+   SR +R ADLI  
Sbjct: 799  FMDAYSLSQEDFDSIVELSKFQGHPNALEGVQPAVKAALTKAYKKGSNSRVIRVADLI-- 856

Query: 634  LQIPGQKKAPKTKRVAKLLNTDEGEFP--LNXXXXXXXXXXXXXXXXXXXXXXXQGIKLS 461
              +PG KKAPK KR+A +L   +   P                             ++L 
Sbjct: 857  -SLPGVKKAPK-KRIAAMLEPVDNGMPEENGEVLLESEEETSSDADIDADTTGEPKLQLD 914

Query: 460  LEEDKPKGLEIELDIKGREXXXXXXXXXXXXXSNNGRAKAGAEAKGVKRKR 308
            L+ +K KG++++LD+K                 +    K G  ++G KRKR
Sbjct: 915  LQSNKSKGIQVQLDLK---DSASSKKTSSKLRGSESAEKVGRGSRGGKRKR 962



 Score =  167 bits (423), Expect(2) = 0.0
 Identities = 82/106 (77%), Positives = 93/106 (87%)
 Frame = -2

Query: 2588 PPHKGEKEVPQGAENCLSGLTFVISGTLDSLEREEAEDLIKSHGGRITTSVSKKTSYLLA 2409
            PPHKGEKEVP+GA +CL+GLTFVISGTLDSLEREEAEDLIK HGGR+T SVSKKT++LLA
Sbjct: 193  PPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNFLLA 252

Query: 2408 DEDIGGRKSQKAKELGVKFLTEDGLFEMIRKSKPPQPSAKEPPNKE 2271
            +EDIGGRK+ KAKELG  FLTEDGLF+MIRKSKP + S  E   K+
Sbjct: 253  EEDIGGRKATKAKELGTAFLTEDGLFDMIRKSKPGRASVLEESKKK 298


>XP_020166115.1 replication factor C subunit 1 [Aegilops tauschii subsp. tauschii]
          Length = 1055

 Score =  674 bits (1740), Expect(2) = 0.0
 Identities = 366/652 (56%), Positives = 445/652 (68%), Gaps = 4/652 (0%)
 Frame = -3

Query: 2251 KMNERSVQYNSNKALQTSKAETAMWTEKYRPKTPNDIVGNQTIVKQLHEWLANWENEHLN 2072
            K N+ S   N+ K     +  +  WTEKYRPK PNDIVGNQ++VKQLH+WL +WE++ L+
Sbjct: 419  KSNKESNSTNNQKVKVVDRG-SLQWTEKYRPKVPNDIVGNQSMVKQLHDWLKSWEDQFLH 477

Query: 2071 TGEKGXXXKKGNKRTGAGNKSSNTSKKAVIMSGPPGIGKTTAARLVSQMLGFETIEVNAS 1892
            +G+KG    KG K+   G      +KKAV++SGPPGIGKTT A++VSQMLG + IEVNAS
Sbjct: 478  SGQKG----KGKKQVDGG------AKKAVLLSGPPGIGKTTTAKVVSQMLGLQAIEVNAS 527

Query: 1891 DSRGKADSKIVKGISGSTANSIKEMITNATIHRGLTNGGK-KSVLIMDEVDGMSGGDRGG 1715
            DSRGKADSKI KG+ GST+NSIKE+I+NAT++       K K+VLIMDEVDGMS GDRGG
Sbjct: 528  DSRGKADSKIEKGVGGSTSNSIKELISNATLNYSDNRTKKPKAVLIMDEVDGMSAGDRGG 587

Query: 1714 VSDLXXXXXXXXXXXXXXCNDRYSQKLKSLMNSCLPLNFRKPTKQQMAKRLRQVAELEGI 1535
            V+DL              CNDRYSQKLKSL+N CL LNFRKPTKQQM KRL ++A  EGI
Sbjct: 588  VADLIASIKISKIPIVCICNDRYSQKLKSLVNYCLLLNFRKPTKQQMGKRLMEIARKEGI 647

Query: 1534 KVDEAALEELGERVNGDMRMALNQLQYMSLSFSAIKYADIKSRLKDGGKDEDITPFTAAN 1355
            +  E A+EEL ERV+GD+RMALN LQYMSLS S +KY DI+ RL    KDEDI+PFTA +
Sbjct: 648  QAQENAMEELAERVHGDIRMALNHLQYMSLSQSVVKYDDIRLRLNSSSKDEDISPFTAVD 707

Query: 1354 KLLGVESSRLIMDEKMDLCMSDPDLVPLLIQENYLNYKPNAAGRDVDGSRRMDLISRAAD 1175
            KL G    RL MDE++DL MSDPDLVPL+IQENY+NY+P+A G+D  G +RM+ ++RAA+
Sbjct: 708  KLFGFNGGRLRMDERIDLSMSDPDLVPLIIQENYINYRPSAVGKDDSGVKRMNYLARAAE 767

Query: 1174 SIADGDIINKQIRRYQQWQHSQMGAFASSIIPSAFIHGYRETFVQGEQNFNRFGAWLGKN 995
            SIADGDI+N QIRRY+QWQ SQ    ASSI+P+A +HG RE    GE+NFNRFG WLGK 
Sbjct: 768  SIADGDIVNVQIRRYRQWQLSQAACLASSIVPAALMHGNREVLEAGERNFNRFGGWLGKY 827

Query: 994  STFGKNTRLLSDVHVHILASSACELSRENLRLDYLSVLLTRLTNPLKTLPKDEAVQAVLD 815
            ST  KN RLL DVH HILAS    L RE LRLDYL++LL +LT PLKT+PK+EAVQ V++
Sbjct: 828  STTNKNKRLLEDVHSHILASQQANLDREALRLDYLTLLLRQLTGPLKTMPKEEAVQKVVE 887

Query: 814  FMDEYSLSQEDFDTIVELSKFQGHLDPLKSIPPAVKAALTKGYKQNEQSRRVRTADLIPA 635
            FMD YSLSQEDFDT+VELSKF+GH +P+  I PAVK+ALTK YKQ   SR VR+ADLI  
Sbjct: 888  FMDTYSLSQEDFDTLVELSKFKGHPNPMDGIQPAVKSALTKAYKQGSSSRVVRSADLI-- 945

Query: 634  LQIPGQKKAPKTKRVAKLLNTDEGEFPLNXXXXXXXXXXXXXXXXXXXXXXXQG---IKL 464
              IPG KK  K KRVA +L   +   P                          G    KL
Sbjct: 946  -NIPGMKKTLK-KRVAAILEPLDESLPEETGVASAEGDEEELSDAENDDELVPGDSKPKL 1003

Query: 463  SLEEDKPKGLEIELDIKGREXXXXXXXXXXXXXSNNGRAKAGAEAKGVKRKR 308
             L+ D  KG++++L++K                   G A       G KRKR
Sbjct: 1004 DLQSDNKKGIQVQLNLKSNGNGSSAKKAPAARSKAPGSAGKAVGGSGGKRKR 1055



 Score =  165 bits (417), Expect(2) = 0.0
 Identities = 84/105 (80%), Positives = 92/105 (87%)
 Frame = -2

Query: 2588 PPHKGEKEVPQGAENCLSGLTFVISGTLDSLEREEAEDLIKSHGGRITTSVSKKTSYLLA 2409
            PPHKGEKEVP+GA +CL+GLTFVISGTLDSLEREEA DLIK +GGR+T S+SKKTSYLLA
Sbjct: 279  PPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAGDLIKRYGGRVTGSISKKTSYLLA 338

Query: 2408 DEDIGGRKSQKAKELGVKFLTEDGLFEMIRKSKPPQPSAKEPPNK 2274
            DEDIGG KS KAK+LGV FLTEDGLF+MIRKSKP    AK P NK
Sbjct: 339  DEDIGGVKSNKAKDLGVPFLTEDGLFDMIRKSKP----AKAPVNK 379


>XP_017985217.1 PREDICTED: replication factor C subunit 1 [Theobroma cacao]
            XP_017985218.1 PREDICTED: replication factor C subunit 1
            [Theobroma cacao] XP_017985219.1 PREDICTED: replication
            factor C subunit 1 [Theobroma cacao]
          Length = 957

 Score =  672 bits (1735), Expect(2) = 0.0
 Identities = 367/667 (55%), Positives = 453/667 (67%), Gaps = 19/667 (2%)
 Frame = -3

Query: 2251 KMNERSVQYNSNKALQTSKAETAM-----------WTEKYRPKTPNDIVGNQTIVKQLHE 2105
            K N  S +  S K+L TS + T             WTEKYRPK PN++ GNQ++V QLH 
Sbjct: 306  KSNSSSAKI-SGKSLTTSVSSTKQRGQPIQHSSLTWTEKYRPKVPNEMTGNQSLVNQLHN 364

Query: 2104 WLANWENEHLNTGEKGXXXKKGNKRTGAGNKSSNTSKKAVIMSGPPGIGKTTAARLVSQM 1925
            WLA+W  + L TG KG    KG K+   G      +KKAV++SG PGIGKTT+A+LVSQM
Sbjct: 365  WLAHWNEQFLGTGSKG----KGKKQNDPG------AKKAVLLSGTPGIGKTTSAKLVSQM 414

Query: 1924 LGFETIEVNASDSRGKADSKIVKGISGSTANSIKEMITNATIHRGLTNGGK-KSVLIMDE 1748
            LGF+TIEVNASDSRGKAD+KI KGI GS ANSIKE+++N  +   +      K+VLIMDE
Sbjct: 415  LGFQTIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSVNMDRSKHVKTVLIMDE 474

Query: 1747 VDGMSGGDRGGVSDLXXXXXXXXXXXXXXCNDRYSQKLKSLMNSCLPLNFRKPTKQQMAK 1568
            VDGMS GDRGG++DL              CNDRYSQKLKSL+N CL L+FRKPTKQQMAK
Sbjct: 475  VDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAK 534

Query: 1567 RLRQVAELEGIKVDEAALEELGERVNGDMRMALNQLQYMSLSFSAIKYADIKSRLKDGGK 1388
            RL QVA  EG++V+E AL+EL ERVNGDMRMALNQLQYMSLS S IKY DI+ RL  G K
Sbjct: 535  RLMQVANAEGLQVNEIALQELAERVNGDMRMALNQLQYMSLSMSVIKYDDIRQRLLSGSK 594

Query: 1387 DEDITPFTAANKLLGVESSRLIMDEKMDLCMSDPDLVPLLIQENYLNYKPNAAGRDVDGS 1208
            DEDI+PFTA +KL G+   +L MD+++DL MSDPDLVPLLIQENY+NY+P++ G+D  G 
Sbjct: 595  DEDISPFTAVDKLFGIYGGKLRMDQRIDLSMSDPDLVPLLIQENYINYRPSSIGKDDSGM 654

Query: 1207 RRMDLISRAADSIADGDIINKQIRRYQQWQHSQMGAFASSIIPSAFIHGYRETFVQGEQN 1028
            +RM+LI++AA+SI DGDIIN QIRRY+QWQ SQ G+ +S IIP+A +HG RET  QGE+N
Sbjct: 655  KRMNLIAQAAESIGDGDIINVQIRRYRQWQLSQAGSLSSCIIPAALLHGQRETLEQGERN 714

Query: 1027 FNRFGAWLGKNSTFGKNTRLLSDVHVHILASSACELSRENLRLDYLSVLLTRLTNPLKTL 848
            FNRFG WLGKNST  KN RLL D+HVHILAS      RE LRLDYL+VLLT+LTNPL+  
Sbjct: 715  FNRFGGWLGKNSTMSKNYRLLEDLHVHILASRESSSGRETLRLDYLTVLLTQLTNPLRDK 774

Query: 847  PKDEAVQAVLDFMDEYSLSQEDFDTIVELSKFQGHLDPLKSIPPAVKAALTKGYKQNEQS 668
            PKDEAV+ V++FM+ YS+SQEDFDT+VELSKFQG  +PL+ IP AVKAALTK Y +  ++
Sbjct: 775  PKDEAVKQVVEFMNAYSISQEDFDTVVELSKFQGQSNPLEGIPAAVKAALTKAYNEGSKT 834

Query: 667  RRVRTADLIPALQIPGQKKAPKTKRVAKLLNTDEGEFPLNXXXXXXXXXXXXXXXXXXXX 488
            + VR ADL+    +PG KKAPK +  A L  +D+     N                    
Sbjct: 835  QMVRAADLV---TLPGMKKAPKKRIAAILEPSDDVLGEENGDTLPESEEKSSDTEDLEGT 891

Query: 487  XXXQGIKLSLEEDKPKGLEIELDIKGREXXXXXXXXXXXXXSNNGRAKAGAEAK------ 326
               + ++  L+    KG+E+++++KG                  G A   AE K      
Sbjct: 892  TDGETLRAELQSLNSKGIEVQMELKGTGNSSAKKAPAGRGRGGKG-ASGSAEKKGGRGSG 950

Query: 325  -GVKRKR 308
             G KRKR
Sbjct: 951  AGAKRKR 957



 Score =  163 bits (412), Expect(2) = 0.0
 Identities = 81/105 (77%), Positives = 90/105 (85%)
 Frame = -2

Query: 2588 PPHKGEKEVPQGAENCLSGLTFVISGTLDSLEREEAEDLIKSHGGRITTSVSKKTSYLLA 2409
            PPHKGEKEVP+GA +CL+GLTFVISGTLDSLEREEAEDLIK HGGRITT+VSKKT+YLL 
Sbjct: 182  PPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITTAVSKKTNYLLC 241

Query: 2408 DEDIGGRKSQKAKELGVKFLTEDGLFEMIRKSKPPQPSAKEPPNK 2274
            DEDI GRKS KAKELG+ FLTEDGLF+MIR S   +  +KE   K
Sbjct: 242  DEDIEGRKSSKAKELGIPFLTEDGLFDMIRASNCGKAHSKEESKK 286


>EOY19345.1 Replication factor C subunit 1 [Theobroma cacao]
          Length = 1012

 Score =  672 bits (1733), Expect(2) = 0.0
 Identities = 357/626 (57%), Positives = 443/626 (70%), Gaps = 12/626 (1%)
 Frame = -3

Query: 2251 KMNERSVQYNSNKALQTSKAETAM-----------WTEKYRPKTPNDIVGNQTIVKQLHE 2105
            K N  S +  S K+L TS + T             WTEKYRPK PN++ GNQ++V QLH 
Sbjct: 306  KSNSSSAKI-SGKSLTTSVSSTKQRGQPIQHSSLTWTEKYRPKVPNEMTGNQSLVNQLHN 364

Query: 2104 WLANWENEHLNTGEKGXXXKKGNKRTGAGNKSSNTSKKAVIMSGPPGIGKTTAARLVSQM 1925
            WLA+W  + L TG KG    KG K+   G      +KKAV++SG PGIGKTT+A+LVSQM
Sbjct: 365  WLAHWNEQFLGTGSKG----KGKKQNDPG------AKKAVLLSGTPGIGKTTSAKLVSQM 414

Query: 1924 LGFETIEVNASDSRGKADSKIVKGISGSTANSIKEMITNATIHRGLTNGGK-KSVLIMDE 1748
            LGF+TIEVNASDSRGKAD+KI KGI GS ANSIKE+++N  +   +      K+VLIMDE
Sbjct: 415  LGFQTIEVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSVNMDRSKHVKTVLIMDE 474

Query: 1747 VDGMSGGDRGGVSDLXXXXXXXXXXXXXXCNDRYSQKLKSLMNSCLPLNFRKPTKQQMAK 1568
            VDGMS GDRGG++DL              CNDRYSQKLKSL+N CL L+FRKPTKQQMAK
Sbjct: 475  VDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAK 534

Query: 1567 RLRQVAELEGIKVDEAALEELGERVNGDMRMALNQLQYMSLSFSAIKYADIKSRLKDGGK 1388
            RL QVA  EG++V+E AL+EL ERVNGDMRMALNQLQYMSLS S IKY DI+ RL  G K
Sbjct: 535  RLMQVANAEGLQVNEIALQELAERVNGDMRMALNQLQYMSLSMSVIKYDDIRQRLLSGSK 594

Query: 1387 DEDITPFTAANKLLGVESSRLIMDEKMDLCMSDPDLVPLLIQENYLNYKPNAAGRDVDGS 1208
            DEDI+PFTA +KL G+   +L MD+++DL MSDPDLVPLLIQENY+NY+P++ G+D  G 
Sbjct: 595  DEDISPFTAVDKLFGIYGGKLRMDQRIDLSMSDPDLVPLLIQENYINYRPSSIGKDDSGM 654

Query: 1207 RRMDLISRAADSIADGDIINKQIRRYQQWQHSQMGAFASSIIPSAFIHGYRETFVQGEQN 1028
            +RM+LI++AA+SI DGDIIN QIRRY+QWQ SQ G+ +S IIP+A +HG RET  QGE+N
Sbjct: 655  KRMNLIAQAAESIGDGDIINVQIRRYRQWQLSQAGSLSSCIIPAALLHGQRETLEQGERN 714

Query: 1027 FNRFGAWLGKNSTFGKNTRLLSDVHVHILASSACELSRENLRLDYLSVLLTRLTNPLKTL 848
            FNRFG WLGKNST  KN RLL D+HVHILAS      RE LRLDYL+VLLT+LTNPL+  
Sbjct: 715  FNRFGGWLGKNSTMSKNYRLLEDLHVHILASRESSSGRETLRLDYLTVLLTQLTNPLRDK 774

Query: 847  PKDEAVQAVLDFMDEYSLSQEDFDTIVELSKFQGHLDPLKSIPPAVKAALTKGYKQNEQS 668
            PKDEAV+ V++FM+ YS+SQEDFDT+VELSKFQG  +PL+ IP AVKAALTK Y +  ++
Sbjct: 775  PKDEAVKQVVEFMNAYSISQEDFDTVVELSKFQGQSNPLEGIPAAVKAALTKAYNEGSKT 834

Query: 667  RRVRTADLIPALQIPGQKKAPKTKRVAKLLNTDEGEFPLNXXXXXXXXXXXXXXXXXXXX 488
            + VR ADL+    +PG KKAPK +  A L  +D+     N                    
Sbjct: 835  QMVRAADLV---TLPGMKKAPKKRIAAILEPSDDVLGEENGDTLPESEEKSSDTEDLEGT 891

Query: 487  XXXQGIKLSLEEDKPKGLEIELDIKG 410
               + ++  L+    KG+E+++++KG
Sbjct: 892  TDGETLRAELQSLNSKGIEVQMELKG 917



 Score =  163 bits (412), Expect(2) = 0.0
 Identities = 81/105 (77%), Positives = 90/105 (85%)
 Frame = -2

Query: 2588 PPHKGEKEVPQGAENCLSGLTFVISGTLDSLEREEAEDLIKSHGGRITTSVSKKTSYLLA 2409
            PPHKGEKEVP+GA +CL+GLTFVISGTLDSLEREEAEDLIK HGGRITT+VSKKT+YLL 
Sbjct: 182  PPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITTAVSKKTNYLLC 241

Query: 2408 DEDIGGRKSQKAKELGVKFLTEDGLFEMIRKSKPPQPSAKEPPNK 2274
            DEDI GRKS KAKELG+ FLTEDGLF+MIR S   +  +KE   K
Sbjct: 242  DEDIEGRKSSKAKELGIPFLTEDGLFDMIRASNCGKAHSKEESKK 286


>BAC76085.1 replication factor C 110 kDa subunit [Oryza sativa Japonica Group]
          Length = 1021

 Score =  672 bits (1733), Expect(2) = 0.0
 Identities = 362/652 (55%), Positives = 446/652 (68%), Gaps = 4/652 (0%)
 Frame = -3

Query: 2251 KMNERSVQYNSNKALQTSKAETAMWTEKYRPKTPNDIVGNQTIVKQLHEWLANWENEHLN 2072
            K N+ S   ++ K     +  +  WTEKYRPK PNDIVGNQ++VKQLH+WL +WE++ L+
Sbjct: 385  KSNKGSASIDNQKVNIVDRG-SLQWTEKYRPKVPNDIVGNQSMVKQLHDWLKSWEDQFLH 443

Query: 2071 TGEKGXXXKKGNKRTGAGNKSSNTSKKAVIMSGPPGIGKTTAARLVSQMLGFETIEVNAS 1892
            +G+KG    KG K+  +G      +KKAV++SGPPGIGKTT A++VSQMLG + IEVNAS
Sbjct: 444  SGQKG----KGKKQADSG------AKKAVLLSGPPGIGKTTTAKVVSQMLGLQAIEVNAS 493

Query: 1891 DSRGKADSKIVKGISGSTANSIKEMITNATIHRGLTNGGK-KSVLIMDEVDGMSGGDRGG 1715
            DSRGKADSKI KG+ GST+NSIKE+I+NAT++       + K+VL+MDEVDGMS GDRGG
Sbjct: 494  DSRGKADSKIEKGVGGSTSNSIKELISNATLNYSNNRLKRPKAVLVMDEVDGMSAGDRGG 553

Query: 1714 VSDLXXXXXXXXXXXXXXCNDRYSQKLKSLMNSCLPLNFRKPTKQQMAKRLRQVAELEGI 1535
            V+DL              CNDRYSQKLKSL+N CL LNFRKPTKQQM KRL ++A+ EG+
Sbjct: 554  VADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLLLNFRKPTKQQMGKRLMEIAKKEGL 613

Query: 1534 KVDEAALEELGERVNGDMRMALNQLQYMSLSFSAIKYADIKSRLKDGGKDEDITPFTAAN 1355
            +  E A+EEL ERV+GD+RMALN LQYMSLS S +KY DI+ RL    KDEDI+PFTA +
Sbjct: 614  QAQENAMEELAERVHGDIRMALNHLQYMSLSQSVVKYDDIRQRLNSSTKDEDISPFTAVD 673

Query: 1354 KLLGVESSRLIMDEKMDLCMSDPDLVPLLIQENYLNYKPNAAGRDVDGSRRMDLISRAAD 1175
            KL G    RL MDE++DL MSDPDLVPL+IQENY+NY+P   G+D  G +RM+ ++RAA+
Sbjct: 674  KLFGFNGGRLRMDERIDLSMSDPDLVPLIIQENYINYRPITVGKDDSGVKRMNFLARAAE 733

Query: 1174 SIADGDIINKQIRRYQQWQHSQMGAFASSIIPSAFIHGYRETFVQGEQNFNRFGAWLGKN 995
            SIAD DI+N QIRRY+QWQ SQ    +SSI+P+A +HG RE    GE+NFNRFG WLGK 
Sbjct: 734  SIADADIVNVQIRRYRQWQLSQAACLSSSIVPAALMHGNREILEAGERNFNRFGGWLGKY 793

Query: 994  STFGKNTRLLSDVHVHILASSACELSRENLRLDYLSVLLTRLTNPLKTLPKDEAVQAVLD 815
            ST  KN RLL D H HILAS    L RE+LRLDYL++LL +LT+PLKT+PKDEAVQ V++
Sbjct: 794  STTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTLLLRQLTDPLKTMPKDEAVQKVVE 853

Query: 814  FMDEYSLSQEDFDTIVELSKFQGHLDPLKSIPPAVKAALTKGYKQNEQSRRVRTADLIPA 635
            FMD YSLSQEDFDTIVELSKF+GH +P+  I PAVK+ALTK YKQ   SR VR ADL+  
Sbjct: 854  FMDTYSLSQEDFDTIVELSKFKGHPNPMDGIQPAVKSALTKAYKQGSSSRVVRAADLV-- 911

Query: 634  LQIPGQKKAPKTKRVAKLLNTDEGEFPLNXXXXXXXXXXXXXXXXXXXXXXXQG---IKL 464
              IPG KK P  KRVA +L       P                          G    KL
Sbjct: 912  -NIPGMKK-PLKKRVAAILEPVGESLPEENGVASSEGDEEDSSDAENNDELVPGDTKPKL 969

Query: 463  SLEEDKPKGLEIELDIKGREXXXXXXXXXXXXXSNNGRAKAGAEAKGVKRKR 308
             L+ DK KG++++LD+K                  +G A   A   G KRKR
Sbjct: 970  DLQSDKKKGIQVQLDLKSNGNGLNSKKMPAGRSKASGSAGKAAGGSGGKRKR 1021



 Score =  162 bits (409), Expect(2) = 0.0
 Identities = 81/106 (76%), Positives = 93/106 (87%), Gaps = 1/106 (0%)
 Frame = -2

Query: 2588 PPHKGEKEVPQGAENCLSGLTFVISGTLDSLEREEAEDLIKSHGGRITTSVSKKTSYLLA 2409
            PPHKGEKEVP+GA +CL+GLTFVISGTLDSLEREEA DLIK +GGR+T S+SKKT+YLLA
Sbjct: 246  PPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTNYLLA 305

Query: 2408 DEDIGGRKSQKAKELGVKFLTEDGLFEMIRKSKPPQPS-AKEPPNK 2274
            DED+GG KS KAKELGV FLTEDGLF+MIRKSKP + + AK   +K
Sbjct: 306  DEDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSDK 351


>XP_015617630.1 PREDICTED: replication factor C subunit 1 [Oryza sativa Japonica
            Group] Q2R2B4.2 RecName: Full=Replication factor C
            subunit 1; Short=OsRFC1; AltName: Full=Activator 1 large
            subunit; AltName: Full=Activator 1 subunit 1 ABA94349.2
            BRCA1 C Terminus domain containing protein, expressed
            [Oryza sativa Japonica Group] BAF28486.1 Os11g0572100
            [Oryza sativa Japonica Group] BAG92033.1 unnamed protein
            product [Oryza sativa Japonica Group] BAT14532.1
            Os11g0572100 [Oryza sativa Japonica Group]
          Length = 1021

 Score =  672 bits (1733), Expect(2) = 0.0
 Identities = 362/652 (55%), Positives = 446/652 (68%), Gaps = 4/652 (0%)
 Frame = -3

Query: 2251 KMNERSVQYNSNKALQTSKAETAMWTEKYRPKTPNDIVGNQTIVKQLHEWLANWENEHLN 2072
            K N+ S   ++ K     +  +  WTEKYRPK PNDIVGNQ++VKQLH+WL +WE++ L+
Sbjct: 385  KSNKGSASIDNQKVNIVDRG-SLQWTEKYRPKVPNDIVGNQSMVKQLHDWLRSWEDQFLH 443

Query: 2071 TGEKGXXXKKGNKRTGAGNKSSNTSKKAVIMSGPPGIGKTTAARLVSQMLGFETIEVNAS 1892
            +G+KG    KG K+  +G      +KKAV++SGPPGIGKTT A++VSQMLG + IEVNAS
Sbjct: 444  SGQKG----KGKKQADSG------AKKAVLLSGPPGIGKTTTAKVVSQMLGLQAIEVNAS 493

Query: 1891 DSRGKADSKIVKGISGSTANSIKEMITNATIHRGLTNGGK-KSVLIMDEVDGMSGGDRGG 1715
            DSRGKADSKI KG+ GST+NSIKE+I+NAT++       + K+VL+MDEVDGMS GDRGG
Sbjct: 494  DSRGKADSKIEKGVGGSTSNSIKELISNATLNYSNNRLKRPKAVLVMDEVDGMSAGDRGG 553

Query: 1714 VSDLXXXXXXXXXXXXXXCNDRYSQKLKSLMNSCLPLNFRKPTKQQMAKRLRQVAELEGI 1535
            V+DL              CNDRYSQKLKSL+N CL LNFRKPTKQQM KRL ++A+ EG+
Sbjct: 554  VADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLLLNFRKPTKQQMGKRLMEIAKKEGL 613

Query: 1534 KVDEAALEELGERVNGDMRMALNQLQYMSLSFSAIKYADIKSRLKDGGKDEDITPFTAAN 1355
            +  E A+EEL ERV+GD+RMALN LQYMSLS S +KY DI+ RL    KDEDI+PFTA +
Sbjct: 614  QAQENAMEELAERVHGDIRMALNHLQYMSLSQSVVKYDDIRQRLNSSTKDEDISPFTAVD 673

Query: 1354 KLLGVESSRLIMDEKMDLCMSDPDLVPLLIQENYLNYKPNAAGRDVDGSRRMDLISRAAD 1175
            KL G    RL MDE++DL MSDPDLVPL+IQENY+NY+P   G+D  G +RM+ ++RAA+
Sbjct: 674  KLFGFNGGRLRMDERIDLSMSDPDLVPLIIQENYINYRPITVGKDDSGVKRMNFLARAAE 733

Query: 1174 SIADGDIINKQIRRYQQWQHSQMGAFASSIIPSAFIHGYRETFVQGEQNFNRFGAWLGKN 995
            SIAD DI+N QIRRY+QWQ SQ    +SSI+P+A +HG RE    GE+NFNRFG WLGK 
Sbjct: 734  SIADADIVNVQIRRYRQWQLSQAACLSSSIVPAALMHGNREILEAGERNFNRFGGWLGKY 793

Query: 994  STFGKNTRLLSDVHVHILASSACELSRENLRLDYLSVLLTRLTNPLKTLPKDEAVQAVLD 815
            ST  KN RLL D H HILAS    L RE+LRLDYL++LL +LT+PLKT+PKDEAVQ V++
Sbjct: 794  STTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTLLLRQLTDPLKTMPKDEAVQKVVE 853

Query: 814  FMDEYSLSQEDFDTIVELSKFQGHLDPLKSIPPAVKAALTKGYKQNEQSRRVRTADLIPA 635
            FMD YSLSQEDFDTIVELSKF+GH +P+  I PAVK+ALTK YKQ   SR VR ADL+  
Sbjct: 854  FMDTYSLSQEDFDTIVELSKFKGHPNPMDGIQPAVKSALTKAYKQGSSSRVVRAADLV-- 911

Query: 634  LQIPGQKKAPKTKRVAKLLNTDEGEFPLNXXXXXXXXXXXXXXXXXXXXXXXQG---IKL 464
              IPG KK P  KRVA +L       P                          G    KL
Sbjct: 912  -NIPGMKK-PLKKRVAAILEPVGESLPEENGVASSEGDEEDSSDAENNDELVPGDTKPKL 969

Query: 463  SLEEDKPKGLEIELDIKGREXXXXXXXXXXXXXSNNGRAKAGAEAKGVKRKR 308
             L+ DK KG++++LD+K                  +G A   A   G KRKR
Sbjct: 970  DLQSDKKKGIQVQLDLKSNGNGLNSKKMPAGRSKASGSAGKAAGGSGGKRKR 1021



 Score =  162 bits (409), Expect(2) = 0.0
 Identities = 81/106 (76%), Positives = 93/106 (87%), Gaps = 1/106 (0%)
 Frame = -2

Query: 2588 PPHKGEKEVPQGAENCLSGLTFVISGTLDSLEREEAEDLIKSHGGRITTSVSKKTSYLLA 2409
            PPHKGEKEVP+GA +CL+GLTFVISGTLDSLEREEA DLIK +GGR+T S+SKKT+YLLA
Sbjct: 246  PPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTNYLLA 305

Query: 2408 DEDIGGRKSQKAKELGVKFLTEDGLFEMIRKSKPPQPS-AKEPPNK 2274
            DED+GG KS KAKELGV FLTEDGLF+MIRKSKP + + AK   +K
Sbjct: 306  DEDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSDK 351


>EEC68391.1 hypothetical protein OsI_36544 [Oryza sativa Indica Group]
          Length = 1014

 Score =  672 bits (1733), Expect(2) = 0.0
 Identities = 362/652 (55%), Positives = 446/652 (68%), Gaps = 4/652 (0%)
 Frame = -3

Query: 2251 KMNERSVQYNSNKALQTSKAETAMWTEKYRPKTPNDIVGNQTIVKQLHEWLANWENEHLN 2072
            K N+ S   ++ K     +  +  WTEKYRPK PNDIVGNQ++VKQLH+WL +WE++ L+
Sbjct: 378  KSNKGSASIDNQKVNIVDRG-SLQWTEKYRPKVPNDIVGNQSMVKQLHDWLRSWEDQFLH 436

Query: 2071 TGEKGXXXKKGNKRTGAGNKSSNTSKKAVIMSGPPGIGKTTAARLVSQMLGFETIEVNAS 1892
            +G+KG    KG K+  +G      +KKAV++SGPPGIGKTT A++VSQMLG + IEVNAS
Sbjct: 437  SGQKG----KGKKQADSG------AKKAVLLSGPPGIGKTTTAKVVSQMLGLQAIEVNAS 486

Query: 1891 DSRGKADSKIVKGISGSTANSIKEMITNATIHRGLTNGGK-KSVLIMDEVDGMSGGDRGG 1715
            DSRGKADSKI KG+ GST+NSIKE+I+NAT++       + K+VL+MDEVDGMS GDRGG
Sbjct: 487  DSRGKADSKIEKGVGGSTSNSIKELISNATLNYSNNRLKRPKAVLVMDEVDGMSAGDRGG 546

Query: 1714 VSDLXXXXXXXXXXXXXXCNDRYSQKLKSLMNSCLPLNFRKPTKQQMAKRLRQVAELEGI 1535
            V+DL              CNDRYSQKLKSL+N CL LNFRKPTKQQM KRL ++A+ EG+
Sbjct: 547  VADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLLLNFRKPTKQQMGKRLMEIAKKEGL 606

Query: 1534 KVDEAALEELGERVNGDMRMALNQLQYMSLSFSAIKYADIKSRLKDGGKDEDITPFTAAN 1355
            +  E A+EEL ERV+GD+RMALN LQYMSLS S +KY DI+ RL    KDEDI+PFTA +
Sbjct: 607  QAQENAMEELAERVHGDIRMALNHLQYMSLSQSVVKYDDIRQRLNSSTKDEDISPFTAVD 666

Query: 1354 KLLGVESSRLIMDEKMDLCMSDPDLVPLLIQENYLNYKPNAAGRDVDGSRRMDLISRAAD 1175
            KL G    RL MDE++DL MSDPDLVPL+IQENY+NY+P   G+D  G +RM+ ++RAA+
Sbjct: 667  KLFGFNGGRLRMDERIDLSMSDPDLVPLIIQENYINYRPITVGKDDSGVKRMNFLARAAE 726

Query: 1174 SIADGDIINKQIRRYQQWQHSQMGAFASSIIPSAFIHGYRETFVQGEQNFNRFGAWLGKN 995
            SIAD DI+N QIRRY+QWQ SQ    +SSI+P+A +HG RE    GE+NFNRFG WLGK 
Sbjct: 727  SIADADIVNVQIRRYRQWQLSQAACLSSSIVPAALMHGNREILEAGERNFNRFGGWLGKY 786

Query: 994  STFGKNTRLLSDVHVHILASSACELSRENLRLDYLSVLLTRLTNPLKTLPKDEAVQAVLD 815
            ST  KN RLL D H HILAS    L RE+LRLDYL++LL +LT+PLKT+PKDEAVQ V++
Sbjct: 787  STTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTLLLRQLTDPLKTMPKDEAVQKVVE 846

Query: 814  FMDEYSLSQEDFDTIVELSKFQGHLDPLKSIPPAVKAALTKGYKQNEQSRRVRTADLIPA 635
            FMD YSLSQEDFDTIVELSKF+GH +P+  I PAVK+ALTK YKQ   SR VR ADL+  
Sbjct: 847  FMDTYSLSQEDFDTIVELSKFKGHPNPMDGIQPAVKSALTKAYKQGSSSRVVRAADLV-- 904

Query: 634  LQIPGQKKAPKTKRVAKLLNTDEGEFPLNXXXXXXXXXXXXXXXXXXXXXXXQG---IKL 464
              IPG KK P  KRVA +L       P                          G    KL
Sbjct: 905  -NIPGMKK-PLKKRVAAILEPVGESLPEENGVASSEGDEEDSSDAENNDELVPGDTKPKL 962

Query: 463  SLEEDKPKGLEIELDIKGREXXXXXXXXXXXXXSNNGRAKAGAEAKGVKRKR 308
             L+ DK KG++++LD+K                  +G A   A   G KRKR
Sbjct: 963  DLQSDKKKGIQVQLDLKSNGNGLNSKKMPAGRSKASGSAGKAAGGSGGKRKR 1014



 Score =  162 bits (409), Expect(2) = 0.0
 Identities = 81/106 (76%), Positives = 93/106 (87%), Gaps = 1/106 (0%)
 Frame = -2

Query: 2588 PPHKGEKEVPQGAENCLSGLTFVISGTLDSLEREEAEDLIKSHGGRITTSVSKKTSYLLA 2409
            PPHKGEKEVP+GA +CL+GLTFVISGTLDSLEREEA DLIK +GGR+T S+SKKT+YLLA
Sbjct: 239  PPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTNYLLA 298

Query: 2408 DEDIGGRKSQKAKELGVKFLTEDGLFEMIRKSKPPQPS-AKEPPNK 2274
            DED+GG KS KAKELGV FLTEDGLF+MIRKSKP + + AK   +K
Sbjct: 299  DEDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSDK 344


>XP_010237623.1 PREDICTED: replication factor C subunit 1 [Brachypodium distachyon]
            KQJ88150.1 hypothetical protein BRADI_4g16040
            [Brachypodium distachyon]
          Length = 1047

 Score =  665 bits (1717), Expect(2) = 0.0
 Identities = 366/654 (55%), Positives = 448/654 (68%), Gaps = 6/654 (0%)
 Frame = -3

Query: 2251 KMNERSVQYNSNKALQTSKAETAMWTEKYRPKTPNDIVGNQTIVKQLHEWLANWENEHLN 2072
            K N+ S   +  KA    +     WTEKYRPK PNDIVGNQ++VKQLH+WL +WE + L+
Sbjct: 413  KSNKESASTDYQKAKIVDRG-ALQWTEKYRPKVPNDIVGNQSMVKQLHDWLKSWEGQFLH 471

Query: 2071 TGEKGXXXKKGNKRTGAGNKSSNTSKKAVIMSGPPGIGKTTAARLVSQMLGFETIEVNAS 1892
            + +KG    KG K+   G      +KKAV++SGPPGIGKTT A++VSQMLG + IEVNAS
Sbjct: 472  SAQKG----KGKKQIDGG------AKKAVLLSGPPGIGKTTTAKVVSQMLGLQAIEVNAS 521

Query: 1891 DSRGKADSKIVKGISGSTANSIKEMITNATIHRGLTNGGK--KSVLIMDEVDGMSGGDRG 1718
            DSRGKADSKI KG+ GST+NSIK +I+NAT++    N  K  K+VL+MDEVDGMS GDRG
Sbjct: 522  DSRGKADSKIEKGVGGSTSNSIKVLISNATLNYS-DNRTKPPKAVLVMDEVDGMSAGDRG 580

Query: 1717 GVSDLXXXXXXXXXXXXXXCNDRYSQKLKSLMNSCLPLNFRKPTKQQMAKRLRQVAELEG 1538
            GV+DL              CNDRYSQKLKSL+N CL LNFRKPTKQQM KRL  +A  EG
Sbjct: 581  GVADLIASIKISKIPIVCICNDRYSQKLKSLVNYCLLLNFRKPTKQQMGKRLMDIARKEG 640

Query: 1537 IKVDEAALEELGERVNGDMRMALNQLQYMSLSFSAIKYADIKSRLKDGGKDEDITPFTAA 1358
            I+  E A+EEL ERV+GD+RMALN LQYMSLS S +KY DI+ RL    KDEDI+PFTA 
Sbjct: 641  IQAQENAMEELAERVHGDIRMALNHLQYMSLSQSVVKYDDIRLRLNSSAKDEDISPFTAV 700

Query: 1357 NKLLGVESSRLIMDEKMDLCMSDPDLVPLLIQENYLNYKPNAAGRDVDGSRRMDLISRAA 1178
            +KL G    RL MDE++DL MSDPDLVPL+IQENY+NY+P+A G+D  G +RM+ ++RAA
Sbjct: 701  DKLFGFNGGRLRMDERIDLSMSDPDLVPLIIQENYINYRPSAVGKDDSGVKRMNCLARAA 760

Query: 1177 DSIADGDIINKQIRRYQQWQHSQMGAFASSIIPSAFIHGYRETFVQGEQNFNRFGAWLGK 998
            +SIADGDI+N QIRRY+QWQ SQ    ASSI+P+A +HG RETF  GE+NFNRFG WLGK
Sbjct: 761  ESIADGDIVNVQIRRYRQWQLSQAACLASSIVPAALMHGNRETFEAGERNFNRFGGWLGK 820

Query: 997  NSTFGKNTRLLSDVHVHILASSACELSRENLRLDYLSVLLTRLTNPLKTLPKDEAVQAVL 818
             ST  KN RLL DVH HILAS    + RE LRLDYL++LL +L +PLKT+PKDEAVQ V+
Sbjct: 821  YSTTNKNKRLLEDVHSHILASQQANVDREALRLDYLTLLLRQLADPLKTMPKDEAVQKVV 880

Query: 817  DFMDEYSLSQEDFDTIVELSKFQGHLDPLKSIPPAVKAALTKGYKQNEQSRRVRTADLIP 638
            +FMD YSLSQEDFDT+VELSKF+GH +P+  I  AVK+ALTK YKQ   SR VR+ADLI 
Sbjct: 881  EFMDTYSLSQEDFDTLVELSKFKGHPNPMDGIQAAVKSALTKAYKQGSSSRVVRSADLI- 939

Query: 637  ALQIPGQKKAPKTKRVAKLLNTDEGEFPLNXXXXXXXXXXXXXXXXXXXXXXXQGI--KL 464
               IPG +K P  KRVA +L   +   P                              KL
Sbjct: 940  --NIPGMRK-PLKKRVAAILEPVDESVPEENGGAAEGDEEDSSDAENDDELVAGDSKPKL 996

Query: 463  SLEEDKPKGLEIELDIK--GREXXXXXXXXXXXXXSNNGRAKAGAEAKGVKRKR 308
             L+ DK KG++++L++K  G                + G+A AG+   G KRKR
Sbjct: 997  DLQSDKKKGIQVQLELKNNGNGLGAKKAPAKARASGSGGKAAAGS---GGKRKR 1047



 Score =  166 bits (421), Expect(2) = 0.0
 Identities = 84/105 (80%), Positives = 92/105 (87%)
 Frame = -2

Query: 2588 PPHKGEKEVPQGAENCLSGLTFVISGTLDSLEREEAEDLIKSHGGRITTSVSKKTSYLLA 2409
            PPHKGEKEVP+GA +CL+GLTFVISGTLDSLEREEA DLIK HGGR+T S+SKKTSYLLA
Sbjct: 273  PPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAGDLIKRHGGRVTGSISKKTSYLLA 332

Query: 2408 DEDIGGRKSQKAKELGVKFLTEDGLFEMIRKSKPPQPSAKEPPNK 2274
            DED+GG KS KAK+LGV FLTEDGLF+MIRKSKP    AK P NK
Sbjct: 333  DEDVGGVKSTKAKDLGVPFLTEDGLFDMIRKSKP----AKPPVNK 373


>XP_012855762.1 PREDICTED: replication factor C subunit 1 [Erythranthe guttata]
            EYU22111.1 hypothetical protein MIMGU_mgv1a000730mg
            [Erythranthe guttata]
          Length = 1000

 Score =  664 bits (1713), Expect(2) = 0.0
 Identities = 351/606 (57%), Positives = 440/606 (72%), Gaps = 2/606 (0%)
 Frame = -3

Query: 2221 SNKALQTSKAETAM-WTEKYRPKTPNDIVGNQTIVKQLHEWLANWENEHLNTGEKGXXXK 2045
            S K      A+T++ WTEKYRPK PNDIVGNQ++VKQLH+WL +W  + LNTG+K    +
Sbjct: 368  SPKRKNQPAAQTSLPWTEKYRPKVPNDIVGNQSLVKQLHDWLVSWNEQFLNTGKK----E 423

Query: 2044 KGNKRTGAGNKSSNTSKKAVIMSGPPGIGKTTAARLVSQMLGFETIEVNASDSRGKADSK 1865
            KG K++ +G       KKAV++SG PGIGKTT+A+L+SQMLGF+ IEVNASDSRGKAD+K
Sbjct: 424  KGKKQSDSG------PKKAVLLSGTPGIGKTTSAKLISQMLGFQAIEVNASDSRGKADAK 477

Query: 1864 IVKGISGSTANSIKEMITNATI-HRGLTNGGKKSVLIMDEVDGMSGGDRGGVSDLXXXXX 1688
            I KGI GST+NS+KE+++N ++ H+      +K+VLIMDEVDGMS GDRGGV+DL     
Sbjct: 478  IQKGIGGSTSNSVKELVSNESLSHKMERTQQQKTVLIMDEVDGMSAGDRGGVADLIASIK 537

Query: 1687 XXXXXXXXXCNDRYSQKLKSLMNSCLPLNFRKPTKQQMAKRLRQVAELEGIKVDEAALEE 1508
                     CNDRYSQKLKSLMN CL L+FRKPTKQQMAKRL  +A+ EGI+V+E ALEE
Sbjct: 538  ISKVPIICICNDRYSQKLKSLMNYCLLLSFRKPTKQQMAKRLSHIAKAEGIQVNEIALEE 597

Query: 1507 LGERVNGDMRMALNQLQYMSLSFSAIKYADIKSRLKDGGKDEDITPFTAANKLLGVESSR 1328
            L ER NGD+RMA+NQLQYMSLS S IK+ DIK RL+   KDEDI+PFTA +KL G  + +
Sbjct: 598  LAERSNGDIRMAINQLQYMSLSMSVIKFDDIKQRLQSSSKDEDISPFTAVDKLFGFNAGK 657

Query: 1327 LIMDEKMDLCMSDPDLVPLLIQENYLNYKPNAAGRDVDGSRRMDLISRAADSIADGDIIN 1148
            L MDE++DL MSDPDLVPLLIQENY+NY+P++AG+D +G +RM LI+RAA+SI DGDIIN
Sbjct: 658  LRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGKDDNGMKRMSLIARAAESIGDGDIIN 717

Query: 1147 KQIRRYQQWQHSQMGAFASSIIPSAFIHGYRETFVQGEQNFNRFGAWLGKNSTFGKNTRL 968
             QIRRY+QWQ SQ G+  S IIP+A +HG RE   QGE+NFNRFG WLGKNST GKN RL
Sbjct: 718  VQIRRYRQWQLSQFGSLTSCIIPAALLHGSREILEQGERNFNRFGGWLGKNSTMGKNYRL 777

Query: 967  LSDVHVHILASSACELSRENLRLDYLSVLLTRLTNPLKTLPKDEAVQAVLDFMDEYSLSQ 788
            L D+HVH+L S   +L R  +RLD L++LL RLT+PL+ LPKDEAV+ V+ FMD YS+S 
Sbjct: 778  LEDLHVHLLTSRESDLGRATIRLDCLTLLLKRLTDPLRVLPKDEAVETVVKFMDSYSISM 837

Query: 787  EDFDTIVELSKFQGHLDPLKSIPPAVKAALTKGYKQNEQSRRVRTADLIPALQIPGQKKA 608
            ED+DTIVE+SKF+GH +PL  I PAVKAALT+ Y +    R VR ADL+    I   KKA
Sbjct: 838  EDYDTIVEMSKFKGHPNPLDGIQPAVKAALTRAYNKGSSLRVVRAADLV---TISNFKKA 894

Query: 607  PKTKRVAKLLNTDEGEFPLNXXXXXXXXXXXXXXXXXXXXXXXQGIKLSLEEDKPKGLEI 428
            PK KR+A +L   EG   L                        + ++ +LE    K +++
Sbjct: 895  PK-KRIAAMLEPLEGS--LAEENEEGTPSDDENQDDDLDDLKKKSVESNLESLNSKAIKV 951

Query: 427  ELDIKG 410
            EL++KG
Sbjct: 952  ELELKG 957



 Score =  167 bits (423), Expect(2) = 0.0
 Identities = 80/102 (78%), Positives = 90/102 (88%)
 Frame = -2

Query: 2588 PPHKGEKEVPQGAENCLSGLTFVISGTLDSLEREEAEDLIKSHGGRITTSVSKKTSYLLA 2409
            PPHKGEKEVP+GA NCL GLTFVISGTLDSLEREEAEDLIK HGGR+T S+SKKT+YLL 
Sbjct: 229  PPHKGEKEVPEGAANCLDGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSISKKTNYLLC 288

Query: 2408 DEDIGGRKSQKAKELGVKFLTEDGLFEMIRKSKPPQPSAKEP 2283
            DEDIGGRKS+KAKELG  FLTEDGLF++IR S   +P+A+ P
Sbjct: 289  DEDIGGRKSEKAKELGTAFLTEDGLFDIIRSSNKSKPAAQVP 330


>XP_010917922.1 PREDICTED: replication factor C subunit 1 isoform X2 [Elaeis
            guineensis]
          Length = 981

 Score =  686 bits (1771), Expect = 0.0
 Identities = 363/636 (57%), Positives = 458/636 (72%), Gaps = 8/636 (1%)
 Frame = -3

Query: 2209 LQTSKAETAMWTEKYRPKTPNDIVGNQTIVKQLHEWLANWENEHLNTGEKGXXXKKGNKR 2030
            +Q++   +  WTEKYRPK PNDI+GNQ++VKQLH+WL +W  + L+T +KG    KG K+
Sbjct: 352  IQSTDRSSLTWTEKYRPKVPNDIIGNQSLVKQLHDWLIHWNEQFLHTDQKG----KGKKQ 407

Query: 2029 TGAGNKSSNTSKKAVIMSGPPGIGKTTAARLVSQMLGFETIEVNASDSRGKADSKIVKGI 1850
              +G      SKKAV++SG PGIGK+T+A+LVSQMLGF+ IEVNASD+RGKAD+KIVKG+
Sbjct: 408  ADSG------SKKAVLLSGSPGIGKSTSAKLVSQMLGFQAIEVNASDNRGKADTKIVKGV 461

Query: 1849 SGSTANSIKEMITNATIHRGLTNGGK--KSVLIMDEVDGMSGGDRGGVSDLXXXXXXXXX 1676
             G+T+NSIKE+I+N  +  G  N  K  KSVLIMDEVDGMS GDRGGV+DL         
Sbjct: 462  GGNTSNSIKELISNEALSCG-KNWSKHPKSVLIMDEVDGMSAGDRGGVADLIASIKISKI 520

Query: 1675 XXXXXCNDRYSQKLKSLMNSCLPLNFRKPTKQQMAKRLRQVAELEGIKVDEAALEELGER 1496
                 CNDRYSQKLKSL+N CL LNFRKPTKQQMAKRL+Q+A+ EG++V+E ALEEL +R
Sbjct: 521  PIICICNDRYSQKLKSLVNYCLLLNFRKPTKQQMAKRLKQIADAEGLQVNEIALEELADR 580

Query: 1495 VNGDMRMALNQLQYMSLSFSAIKYADIKSRLKDGGKDEDITPFTAANKLLGVESSRLIMD 1316
            VNGDMRMA+NQLQYMSLS S I Y DI+ RL    KDEDI+PFTA +KL G    +L MD
Sbjct: 581  VNGDMRMAINQLQYMSLSQSVINYDDIRQRLLSSSKDEDISPFTAVDKLFGFNGGKLRMD 640

Query: 1315 EKMDLCMSDPDLVPLLIQENYLNYKPNAAGRDVDGSRRMDLISRAADSIADGDIINKQIR 1136
            E++DL MSDPDLVPL+IQENY+NY+P++ G+D +G +RM+L++RAA+SI DGDI+N QIR
Sbjct: 641  ERIDLSMSDPDLVPLIIQENYINYRPSSIGKDDNGVKRMNLLARAAESIGDGDIVNVQIR 700

Query: 1135 RYQQWQHSQMGAFASSIIPSAFIHGYRETFVQGEQNFNRFGAWLGKNSTFGKNTRLLSDV 956
            RY+QWQ SQ G+FAS IIP+A +HG+RET   GE+N+NRFG WLGKNST GKN RLL DV
Sbjct: 701  RYRQWQLSQAGSFASCIIPAALMHGHRETLEPGERNYNRFGGWLGKNSTTGKNLRLLEDV 760

Query: 955  HVHILASSACELSRENLRLDYLSVLLTRLTNPLKTLPKDEAVQAVLDFMDEYSLSQEDFD 776
            H+HILAS    ++RE LR+DY ++LL +LT+PL+ +PK+EAVQ V++ MD YSLSQEDFD
Sbjct: 761  HIHILASQEANMNRETLRVDYFTLLLKQLTDPLRVMPKEEAVQKVVELMDTYSLSQEDFD 820

Query: 775  TIVELSKFQGHLDPLKSIPPAVKAALTKGYKQNEQSRRVRTADLIPALQIPGQKKAPKTK 596
            TIVELSKF+GH +P++ I PAVKAALTK YKQ   SR VR ADLI    +PG KKAPK K
Sbjct: 821  TIVELSKFRGHPNPMEGIQPAVKAALTKAYKQGSSSRVVRAADLI---TLPGVKKAPK-K 876

Query: 595  RVAKLLNTDEGEFPLNXXXXXXXXXXXXXXXXXXXXXXXQGI------KLSLEEDKPKGL 434
            R+A +L   EG                                     +L L  +KPKG+
Sbjct: 877  RIAAMLEPVEGGLAEENGDAVAEGEEEDSSDSEDTDDVGSNTNGEAKPQLDLLGNKPKGV 936

Query: 433  EIELDIKGREXXXXXXXXXXXXXSNNGRAKAGAEAK 326
            ++ELD+K                 +NG++K+GA+ K
Sbjct: 937  QVELDLK-----------------SNGKSKSGAKKK 955



 Score =  171 bits (432), Expect = 7e-40
 Identities = 83/106 (78%), Positives = 93/106 (87%)
 Frame = -2

Query: 2588 PPHKGEKEVPQGAENCLSGLTFVISGTLDSLEREEAEDLIKSHGGRITTSVSKKTSYLLA 2409
            PPHKGEKEVP+GA  CL+GLTFVISGTLDSLEREEAEDLIK HGGR+T SVSK+TS+LLA
Sbjct: 205  PPHKGEKEVPEGAPECLAGLTFVISGTLDSLEREEAEDLIKHHGGRVTGSVSKRTSFLLA 264

Query: 2408 DEDIGGRKSQKAKELGVKFLTEDGLFEMIRKSKPPQPSAKEPPNKE 2271
            DEDIGGRKS KAKELG+ FLTEDGLF+MIRKSKP +   +E   K+
Sbjct: 265  DEDIGGRKSSKAKELGIPFLTEDGLFDMIRKSKPAKAHVQEEQKKK 310


>XP_010917920.1 PREDICTED: replication factor C subunit 1 isoform X1 [Elaeis
            guineensis] XP_010917921.1 PREDICTED: replication factor
            C subunit 1 isoform X1 [Elaeis guineensis]
          Length = 982

 Score =  686 bits (1771), Expect = 0.0
 Identities = 363/636 (57%), Positives = 458/636 (72%), Gaps = 8/636 (1%)
 Frame = -3

Query: 2209 LQTSKAETAMWTEKYRPKTPNDIVGNQTIVKQLHEWLANWENEHLNTGEKGXXXKKGNKR 2030
            +Q++   +  WTEKYRPK PNDI+GNQ++VKQLH+WL +W  + L+T +KG    KG K+
Sbjct: 353  IQSTDRSSLTWTEKYRPKVPNDIIGNQSLVKQLHDWLIHWNEQFLHTDQKG----KGKKQ 408

Query: 2029 TGAGNKSSNTSKKAVIMSGPPGIGKTTAARLVSQMLGFETIEVNASDSRGKADSKIVKGI 1850
              +G      SKKAV++SG PGIGK+T+A+LVSQMLGF+ IEVNASD+RGKAD+KIVKG+
Sbjct: 409  ADSG------SKKAVLLSGSPGIGKSTSAKLVSQMLGFQAIEVNASDNRGKADTKIVKGV 462

Query: 1849 SGSTANSIKEMITNATIHRGLTNGGK--KSVLIMDEVDGMSGGDRGGVSDLXXXXXXXXX 1676
             G+T+NSIKE+I+N  +  G  N  K  KSVLIMDEVDGMS GDRGGV+DL         
Sbjct: 463  GGNTSNSIKELISNEALSCG-KNWSKHPKSVLIMDEVDGMSAGDRGGVADLIASIKISKI 521

Query: 1675 XXXXXCNDRYSQKLKSLMNSCLPLNFRKPTKQQMAKRLRQVAELEGIKVDEAALEELGER 1496
                 CNDRYSQKLKSL+N CL LNFRKPTKQQMAKRL+Q+A+ EG++V+E ALEEL +R
Sbjct: 522  PIICICNDRYSQKLKSLVNYCLLLNFRKPTKQQMAKRLKQIADAEGLQVNEIALEELADR 581

Query: 1495 VNGDMRMALNQLQYMSLSFSAIKYADIKSRLKDGGKDEDITPFTAANKLLGVESSRLIMD 1316
            VNGDMRMA+NQLQYMSLS S I Y DI+ RL    KDEDI+PFTA +KL G    +L MD
Sbjct: 582  VNGDMRMAINQLQYMSLSQSVINYDDIRQRLLSSSKDEDISPFTAVDKLFGFNGGKLRMD 641

Query: 1315 EKMDLCMSDPDLVPLLIQENYLNYKPNAAGRDVDGSRRMDLISRAADSIADGDIINKQIR 1136
            E++DL MSDPDLVPL+IQENY+NY+P++ G+D +G +RM+L++RAA+SI DGDI+N QIR
Sbjct: 642  ERIDLSMSDPDLVPLIIQENYINYRPSSIGKDDNGVKRMNLLARAAESIGDGDIVNVQIR 701

Query: 1135 RYQQWQHSQMGAFASSIIPSAFIHGYRETFVQGEQNFNRFGAWLGKNSTFGKNTRLLSDV 956
            RY+QWQ SQ G+FAS IIP+A +HG+RET   GE+N+NRFG WLGKNST GKN RLL DV
Sbjct: 702  RYRQWQLSQAGSFASCIIPAALMHGHRETLEPGERNYNRFGGWLGKNSTTGKNLRLLEDV 761

Query: 955  HVHILASSACELSRENLRLDYLSVLLTRLTNPLKTLPKDEAVQAVLDFMDEYSLSQEDFD 776
            H+HILAS    ++RE LR+DY ++LL +LT+PL+ +PK+EAVQ V++ MD YSLSQEDFD
Sbjct: 762  HIHILASQEANMNRETLRVDYFTLLLKQLTDPLRVMPKEEAVQKVVELMDTYSLSQEDFD 821

Query: 775  TIVELSKFQGHLDPLKSIPPAVKAALTKGYKQNEQSRRVRTADLIPALQIPGQKKAPKTK 596
            TIVELSKF+GH +P++ I PAVKAALTK YKQ   SR VR ADLI    +PG KKAPK K
Sbjct: 822  TIVELSKFRGHPNPMEGIQPAVKAALTKAYKQGSSSRVVRAADLI---TLPGVKKAPK-K 877

Query: 595  RVAKLLNTDEGEFPLNXXXXXXXXXXXXXXXXXXXXXXXQGI------KLSLEEDKPKGL 434
            R+A +L   EG                                     +L L  +KPKG+
Sbjct: 878  RIAAMLEPVEGGLAEENGDAVAEGEEEDSSDSEDTDDVGSNTNGEAKPQLDLLGNKPKGV 937

Query: 433  EIELDIKGREXXXXXXXXXXXXXSNNGRAKAGAEAK 326
            ++ELD+K                 +NG++K+GA+ K
Sbjct: 938  QVELDLK-----------------SNGKSKSGAKKK 956



 Score =  171 bits (432), Expect = 7e-40
 Identities = 83/106 (78%), Positives = 93/106 (87%)
 Frame = -2

Query: 2588 PPHKGEKEVPQGAENCLSGLTFVISGTLDSLEREEAEDLIKSHGGRITTSVSKKTSYLLA 2409
            PPHKGEKEVP+GA  CL+GLTFVISGTLDSLEREEAEDLIK HGGR+T SVSK+TS+LLA
Sbjct: 205  PPHKGEKEVPEGAPECLAGLTFVISGTLDSLEREEAEDLIKHHGGRVTGSVSKRTSFLLA 264

Query: 2408 DEDIGGRKSQKAKELGVKFLTEDGLFEMIRKSKPPQPSAKEPPNKE 2271
            DEDIGGRKS KAKELG+ FLTEDGLF+MIRKSKP +   +E   K+
Sbjct: 265  DEDIGGRKSSKAKELGIPFLTEDGLFDMIRKSKPAKAHVQEEQKKK 310


>XP_012459306.1 PREDICTED: replication factor C subunit 1 [Gossypium raimondii]
          Length = 992

 Score =  667 bits (1720), Expect(2) = 0.0
 Identities = 355/644 (55%), Positives = 445/644 (69%), Gaps = 1/644 (0%)
 Frame = -3

Query: 2224 NSNKALQTSKAETAMWTEKYRPKTPNDIVGNQTIVKQLHEWLANWENEHLNTGEKGXXXK 2045
            ++ K  Q  +  +  WTEKYRPK PN+I GNQ++VKQLH+WL  W  + L TG KG    
Sbjct: 361  SAKKRGQPVQHSSLPWTEKYRPKVPNEITGNQSLVKQLHDWLTQWNKQFLGTGSKG---- 416

Query: 2044 KGNKRTGAGNKSSNTSKKAVIMSGPPGIGKTTAARLVSQMLGFETIEVNASDSRGKADSK 1865
            KG K+  +G      +KKAV++SG PGIGKTT+A+LVSQMLGF+TIEVNASDSRGKAD+ 
Sbjct: 417  KGKKQNDSG------AKKAVLLSGTPGIGKTTSAKLVSQMLGFQTIEVNASDSRGKADAN 470

Query: 1864 IVKGISGSTANSIKEMITNATIHRGLTNGGK-KSVLIMDEVDGMSGGDRGGVSDLXXXXX 1688
            + KGI GS ANSIKE+++N  +   +      K+VLIMDEVDGMS GDRGG++DL     
Sbjct: 471  VSKGIGGSNANSIKELVSNEALGVNMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK 530

Query: 1687 XXXXXXXXXCNDRYSQKLKSLMNSCLPLNFRKPTKQQMAKRLRQVAELEGIKVDEAALEE 1508
                     CNDRYSQKLKSL+N CL L++RKPTKQQMAKRL QVA  EG++V+E ALEE
Sbjct: 531  ISKIPIICICNDRYSQKLKSLVNYCLLLSYRKPTKQQMAKRLMQVANAEGLQVNEIALEE 590

Query: 1507 LGERVNGDMRMALNQLQYMSLSFSAIKYADIKSRLKDGGKDEDITPFTAANKLLGVESSR 1328
            L ERVNGDMRMALNQLQYMSLS S I Y DIK RL    KDED++PFTA +KL G    +
Sbjct: 591  LAERVNGDMRMALNQLQYMSLSMSVINYNDIKQRLLSSSKDEDMSPFTAVDKLFGFNGGK 650

Query: 1327 LIMDEKMDLCMSDPDLVPLLIQENYLNYKPNAAGRDVDGSRRMDLISRAADSIADGDIIN 1148
            L MDE++DL MSDPDLVPLL+QENY+NY+P++ G+D  G +RM+ I+RAA+SI DGDIIN
Sbjct: 651  LRMDERIDLSMSDPDLVPLLVQENYINYRPSSIGKDDSGIKRMNSIARAAESIGDGDIIN 710

Query: 1147 KQIRRYQQWQHSQMGAFASSIIPSAFIHGYRETFVQGEQNFNRFGAWLGKNSTFGKNTRL 968
             QIRRY+QWQ SQ  A +S IIP+A +HG RET  QGE+NFNRFG WLGKNST  KN RL
Sbjct: 711  VQIRRYRQWQLSQTSALSSCIIPAALLHGQRETLEQGERNFNRFGGWLGKNSTMSKNYRL 770

Query: 967  LSDVHVHILASSACELSRENLRLDYLSVLLTRLTNPLKTLPKDEAVQAVLDFMDEYSLSQ 788
            L D+HVH LAS      RE LRL+YL++LL RLTNPL+ +PKDEAV+ VL+ M+ YS+SQ
Sbjct: 771  LEDLHVHFLASRESCSGRETLRLEYLTILLKRLTNPLRDMPKDEAVKQVLECMNAYSISQ 830

Query: 787  EDFDTIVELSKFQGHLDPLKSIPPAVKAALTKGYKQNEQSRRVRTADLIPALQIPGQKKA 608
            EDFDTIVELSKFQG  +P++ IPPAVKAALTK YK+  ++R +R ADL+    +PG KKA
Sbjct: 831  EDFDTIVELSKFQGSPNPMEGIPPAVKAALTKAYKEGSKTRIIRAADLV---TLPGMKKA 887

Query: 607  PKTKRVAKLLNTDEGEFPLNXXXXXXXXXXXXXXXXXXXXXXXQGIKLSLEEDKPKGLEI 428
            PK +  A L  +D+     N                       + ++  L+    KG+E+
Sbjct: 888  PKKRIAAILEPSDDVLGEENGDELPENDENTSDTEDLEGTTNGEKLQAELQSLNSKGIEV 947

Query: 427  ELDIKGREXXXXXXXXXXXXXSNNGRAKAGAEAKGVKRKR*NGS 296
            ++++KG               + +GRAK G  A   ++K   GS
Sbjct: 948  QMELKG-------TGNSSAKKAPSGRAKGGGRAASAEKKGGRGS 984



 Score =  162 bits (410), Expect(2) = 0.0
 Identities = 81/105 (77%), Positives = 89/105 (84%)
 Frame = -2

Query: 2588 PPHKGEKEVPQGAENCLSGLTFVISGTLDSLEREEAEDLIKSHGGRITTSVSKKTSYLLA 2409
            PPHKGEKEVP+GA +CL+GLTFVISGTLDSLEREEAEDLIK +GGR+T SVSKKT+YLL 
Sbjct: 224  PPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEAEDLIKRYGGRVTGSVSKKTNYLLC 283

Query: 2408 DEDIGGRKSQKAKELGVKFLTEDGLFEMIRKSKPPQPSAKEPPNK 2274
            DEDIGGRKS KAKELG KFLTEDGLF+MIR S   +   K   NK
Sbjct: 284  DEDIGGRKSSKAKELGTKFLTEDGLFDMIRASNHGKAPLKGQSNK 328


>XP_017615387.1 PREDICTED: replication factor C subunit 1 [Gossypium arboreum]
          Length = 990

 Score =  667 bits (1721), Expect(2) = 0.0
 Identities = 355/644 (55%), Positives = 444/644 (68%), Gaps = 1/644 (0%)
 Frame = -3

Query: 2224 NSNKALQTSKAETAMWTEKYRPKTPNDIVGNQTIVKQLHEWLANWENEHLNTGEKGXXXK 2045
            ++ K  Q  +  +  WTEKYRPK PN+I GNQ++VKQLH+WL  W  + L TG KG    
Sbjct: 359  SAKKREQPVQHSSLPWTEKYRPKVPNEITGNQSLVKQLHDWLTQWNKQFLGTGSKG---- 414

Query: 2044 KGNKRTGAGNKSSNTSKKAVIMSGPPGIGKTTAARLVSQMLGFETIEVNASDSRGKADSK 1865
            KG K+  AG      +KKAV++SG PGIGKTT+A+LVSQMLGF+TIEVNASDSRGKAD+ 
Sbjct: 415  KGKKQNDAG------AKKAVLLSGTPGIGKTTSAKLVSQMLGFQTIEVNASDSRGKADAN 468

Query: 1864 IVKGISGSTANSIKEMITNATIHRGLTNGGK-KSVLIMDEVDGMSGGDRGGVSDLXXXXX 1688
            + KGI GS ANSIKE+++N  +   +      K+VLIMDEVDGMS GDRGG++DL     
Sbjct: 469  VSKGIGGSNANSIKELVSNEALGVNMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIR 528

Query: 1687 XXXXXXXXXCNDRYSQKLKSLMNSCLPLNFRKPTKQQMAKRLRQVAELEGIKVDEAALEE 1508
                     CNDRYSQKLKSL+N CL L++RKPTKQQMAKRL Q+A  EG++V+E ALEE
Sbjct: 529  ISKIPIICICNDRYSQKLKSLVNYCLLLSYRKPTKQQMAKRLMQIANAEGLQVNEIALEE 588

Query: 1507 LGERVNGDMRMALNQLQYMSLSFSAIKYADIKSRLKDGGKDEDITPFTAANKLLGVESSR 1328
            L ERVNGD+RMALNQLQYMSLS S I Y DIK RL    KDEDI+PFTA +KL G    +
Sbjct: 589  LAERVNGDIRMALNQLQYMSLSMSVINYNDIKQRLLSSSKDEDISPFTAVDKLFGFNGGK 648

Query: 1327 LIMDEKMDLCMSDPDLVPLLIQENYLNYKPNAAGRDVDGSRRMDLISRAADSIADGDIIN 1148
            L MDE++DL MSDPDLVPLL+QENY+NY+P++ G+D  G +RM+ I+RAA+SI DGDIIN
Sbjct: 649  LRMDERIDLSMSDPDLVPLLVQENYINYRPSSIGKDDSGIKRMNSIARAAESIGDGDIIN 708

Query: 1147 KQIRRYQQWQHSQMGAFASSIIPSAFIHGYRETFVQGEQNFNRFGAWLGKNSTFGKNTRL 968
             QIRRY+QWQ SQ  A +S IIP+A +HG RET  QGE+NFNRFG WLGKNST  KN RL
Sbjct: 709  VQIRRYRQWQLSQTSALSSCIIPAALLHGQRETLEQGERNFNRFGGWLGKNSTMSKNYRL 768

Query: 967  LSDVHVHILASSACELSRENLRLDYLSVLLTRLTNPLKTLPKDEAVQAVLDFMDEYSLSQ 788
            L D HVH LAS      RE LRL+YL +LL RLTNPL+ +PKDEAV+ VL+FM+ YS+SQ
Sbjct: 769  LEDFHVHFLASRESCSGRETLRLEYLPILLKRLTNPLRDMPKDEAVKQVLEFMNAYSISQ 828

Query: 787  EDFDTIVELSKFQGHLDPLKSIPPAVKAALTKGYKQNEQSRRVRTADLIPALQIPGQKKA 608
            EDFDTIVELSKFQG+ +P++ IP AVKAALTK YK+  ++R +R ADL+    +PG KKA
Sbjct: 829  EDFDTIVELSKFQGYPNPMEGIPSAVKAALTKAYKEGSKTRIIRAADLV---TLPGMKKA 885

Query: 607  PKTKRVAKLLNTDEGEFPLNXXXXXXXXXXXXXXXXXXXXXXXQGIKLSLEEDKPKGLEI 428
            PK +  A L  +D+     N                       + ++  L+    KG+E+
Sbjct: 886  PKKRIAAILEPSDDVLGEENGDELPENDENTSDSEDLEGTTNGEKLQAELQSLNSKGIEV 945

Query: 427  ELDIKGREXXXXXXXXXXXXXSNNGRAKAGAEAKGVKRKR*NGS 296
            ++++KG               + +GRAK G  A   ++K   GS
Sbjct: 946  QMELKG-------TGNSSAKKAPSGRAKGGGRAASAEKKGGRGS 982



 Score =  161 bits (407), Expect(2) = 0.0
 Identities = 80/105 (76%), Positives = 89/105 (84%)
 Frame = -2

Query: 2588 PPHKGEKEVPQGAENCLSGLTFVISGTLDSLEREEAEDLIKSHGGRITTSVSKKTSYLLA 2409
            PPHKGEKEVP+GA +CL+GLTFVISGTLDSLEREEA+DLIK +GGR+T SVSKKT+YLL 
Sbjct: 222  PPHKGEKEVPEGAPDCLNGLTFVISGTLDSLEREEADDLIKRYGGRVTGSVSKKTNYLLC 281

Query: 2408 DEDIGGRKSQKAKELGVKFLTEDGLFEMIRKSKPPQPSAKEPPNK 2274
            DEDIGGRKS KAKELG KFLTEDGLF+MIR S   +   K   NK
Sbjct: 282  DEDIGGRKSSKAKELGTKFLTEDGLFDMIRASNHGKAPLKGQSNK 326


>XP_008670813.1 PREDICTED: replication factor C subunit 1 [Zea mays] ONM26972.1
            Replication factor C subunit 1 [Zea mays] ONM26974.1
            Replication factor C subunit 1 [Zea mays] ONM26986.1
            Replication factor C subunit 1 [Zea mays]
          Length = 985

 Score =  665 bits (1715), Expect(2) = 0.0
 Identities = 364/659 (55%), Positives = 445/659 (67%), Gaps = 15/659 (2%)
 Frame = -3

Query: 2239 RSVQYNSNKALQTSKAE--------TAMWTEKYRPKTPNDIVGNQTIVKQLHEWLANWEN 2084
            +S+  NSN A  ++  +        +  WTEKYRPK PNDIVGNQ++VKQLH+WL +W+ 
Sbjct: 342  KSIASNSNAASASADKQKPKIVDRGSMQWTEKYRPKVPNDIVGNQSMVKQLHDWLKSWDA 401

Query: 2083 EHLNTGEKGXXXKKGNKRTGAGNKSSNTSKKAVIMSGPPGIGKTTAARLVSQMLGFETIE 1904
              L++G+KG    KG K+T       + +KKAV++SGPPGIGKTT A++VSQMLG + IE
Sbjct: 402  LFLHSGQKG----KGKKQT------DSAAKKAVLLSGPPGIGKTTTAKVVSQMLGLQAIE 451

Query: 1903 VNASDSRGKADSKIVKGISGSTANSIKEMITNATIHRGLTN-GGKKSVLIMDEVDGMSGG 1727
            VNASDSRGKADSKI KG+ GST+NSIKE+I NAT++         K+VL+MDEVDGMS G
Sbjct: 452  VNASDSRGKADSKIEKGVGGSTSNSIKELINNATLNYSDNRLKHPKAVLVMDEVDGMSAG 511

Query: 1726 DRGGVSDLXXXXXXXXXXXXXXCNDRYSQKLKSLMNSCLPLNFRKPTKQQMAKRLRQVAE 1547
            DRGGV+DL              CNDRYSQKLK+L+N CL LNFRKPTKQQM KRL ++A+
Sbjct: 512  DRGGVADLIASIKISKIPIICICNDRYSQKLKNLVNYCLMLNFRKPTKQQMGKRLMEIAK 571

Query: 1546 LEGIKVDEAALEELGERVNGDMRMALNQLQYMSLSFSAIKYADIKSRLKDGGKDEDITPF 1367
             EGI+  E A+EEL ERV+GD+RMALN LQYMSLS S +KY DIK RL    KDEDI+PF
Sbjct: 572  KEGIQAQENAMEELAERVHGDIRMALNHLQYMSLSQSVVKYDDIKERLNSSSKDEDISPF 631

Query: 1366 TAANKLLGVESSRLIMDEKMDLCMSDPDLVPLLIQENYLNYKPNAAGRDVDGSRRMDLIS 1187
            TA +KL G    RL MDE+MD  MSDPDLVPL+IQENY+NY+PN  G+D  G +RM+ ++
Sbjct: 632  TAVDKLFGFNGGRLRMDERMDFGMSDPDLVPLIIQENYINYRPNTIGKDESGVKRMNALA 691

Query: 1186 RAADSIADGDIINKQIRRYQQWQHSQMGAFASSIIPSAFIHGYRETFVQGEQNFNRFGAW 1007
            RAA+SIADGD++N QIRRY+QWQ SQ   FASSI+P+A +HG RE    GE+NFNRFG W
Sbjct: 692  RAAESIADGDLVNVQIRRYRQWQLSQAACFASSIVPAALMHGNREILEAGERNFNRFGGW 751

Query: 1006 LGKNSTFGKNTRLLSDVHVHILASSACELSRENLRLDYLSVLLTRLTNPLKTLPKDEAVQ 827
            LGK ST  KN RLL DVH HILAS    L R+ LRLDYL+++L  LT+PLK + KDEAVQ
Sbjct: 752  LGKYSTTNKNRRLLEDVHSHILASQQANLDRDALRLDYLTLILRELTDPLKKMSKDEAVQ 811

Query: 826  AVLDFMDEYSLSQEDFDTIVELSKFQGHLDPLKSIPPAVKAALTKGYKQNEQSRRVRTAD 647
             V++FMD YSLSQEDFDTIVE+SKF+GH  P+  I PAVK+ALTK YKQ   SR VR AD
Sbjct: 812  KVVEFMDTYSLSQEDFDTIVEVSKFKGHPSPMDGIQPAVKSALTKAYKQGSSSRVVRAAD 871

Query: 646  LIPALQIPGQKKAPKTKRVAKLLNTDEGEFPLNXXXXXXXXXXXXXXXXXXXXXXXQG-- 473
            LI    IPG KK P  KRVA +L   E   P                             
Sbjct: 872  LI---NIPGMKK-PLKKRVAAILEPVEESLPEENGLASAEDDEDGSSDAENNDELVPADS 927

Query: 472  -IKLSLEEDKPKGLEIELDIKGR---EXXXXXXXXXXXXXSNNGRAKAGAEAKGVKRKR 308
              KL L+ DK KG++++LD+K                    + G+A AG  + G KRKR
Sbjct: 928  TPKLDLQSDKKKGIQVQLDLKSNGDGPRGKKAPAARSRATGSGGKAAAGGGSAG-KRKR 985



 Score =  163 bits (413), Expect(2) = 0.0
 Identities = 83/105 (79%), Positives = 92/105 (87%)
 Frame = -2

Query: 2588 PPHKGEKEVPQGAENCLSGLTFVISGTLDSLEREEAEDLIKSHGGRITTSVSKKTSYLLA 2409
            PPHKGEKEVP+GA +CLSGLTFVISGTLDSLEREEA DLIK +GGR+T S+SKKTSYLLA
Sbjct: 209  PPHKGEKEVPEGAPDCLSGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTSYLLA 268

Query: 2408 DEDIGGRKSQKAKELGVKFLTEDGLFEMIRKSKPPQPSAKEPPNK 2274
            DEDIGG KS KAK+LGV FLTEDGLF++IRKSKP    AK P +K
Sbjct: 269  DEDIGGVKSNKAKDLGVPFLTEDGLFDLIRKSKP----AKAPVDK 309


>ONM26987.1 Replication factor C subunit 1 [Zea mays]
          Length = 976

 Score =  665 bits (1715), Expect(2) = 0.0
 Identities = 364/659 (55%), Positives = 445/659 (67%), Gaps = 15/659 (2%)
 Frame = -3

Query: 2239 RSVQYNSNKALQTSKAE--------TAMWTEKYRPKTPNDIVGNQTIVKQLHEWLANWEN 2084
            +S+  NSN A  ++  +        +  WTEKYRPK PNDIVGNQ++VKQLH+WL +W+ 
Sbjct: 333  KSIASNSNAASASADKQKPKIVDRGSMQWTEKYRPKVPNDIVGNQSMVKQLHDWLKSWDA 392

Query: 2083 EHLNTGEKGXXXKKGNKRTGAGNKSSNTSKKAVIMSGPPGIGKTTAARLVSQMLGFETIE 1904
              L++G+KG    KG K+T       + +KKAV++SGPPGIGKTT A++VSQMLG + IE
Sbjct: 393  LFLHSGQKG----KGKKQT------DSAAKKAVLLSGPPGIGKTTTAKVVSQMLGLQAIE 442

Query: 1903 VNASDSRGKADSKIVKGISGSTANSIKEMITNATIHRGLTN-GGKKSVLIMDEVDGMSGG 1727
            VNASDSRGKADSKI KG+ GST+NSIKE+I NAT++         K+VL+MDEVDGMS G
Sbjct: 443  VNASDSRGKADSKIEKGVGGSTSNSIKELINNATLNYSDNRLKHPKAVLVMDEVDGMSAG 502

Query: 1726 DRGGVSDLXXXXXXXXXXXXXXCNDRYSQKLKSLMNSCLPLNFRKPTKQQMAKRLRQVAE 1547
            DRGGV+DL              CNDRYSQKLK+L+N CL LNFRKPTKQQM KRL ++A+
Sbjct: 503  DRGGVADLIASIKISKIPIICICNDRYSQKLKNLVNYCLMLNFRKPTKQQMGKRLMEIAK 562

Query: 1546 LEGIKVDEAALEELGERVNGDMRMALNQLQYMSLSFSAIKYADIKSRLKDGGKDEDITPF 1367
             EGI+  E A+EEL ERV+GD+RMALN LQYMSLS S +KY DIK RL    KDEDI+PF
Sbjct: 563  KEGIQAQENAMEELAERVHGDIRMALNHLQYMSLSQSVVKYDDIKERLNSSSKDEDISPF 622

Query: 1366 TAANKLLGVESSRLIMDEKMDLCMSDPDLVPLLIQENYLNYKPNAAGRDVDGSRRMDLIS 1187
            TA +KL G    RL MDE+MD  MSDPDLVPL+IQENY+NY+PN  G+D  G +RM+ ++
Sbjct: 623  TAVDKLFGFNGGRLRMDERMDFGMSDPDLVPLIIQENYINYRPNTIGKDESGVKRMNALA 682

Query: 1186 RAADSIADGDIINKQIRRYQQWQHSQMGAFASSIIPSAFIHGYRETFVQGEQNFNRFGAW 1007
            RAA+SIADGD++N QIRRY+QWQ SQ   FASSI+P+A +HG RE    GE+NFNRFG W
Sbjct: 683  RAAESIADGDLVNVQIRRYRQWQLSQAACFASSIVPAALMHGNREILEAGERNFNRFGGW 742

Query: 1006 LGKNSTFGKNTRLLSDVHVHILASSACELSRENLRLDYLSVLLTRLTNPLKTLPKDEAVQ 827
            LGK ST  KN RLL DVH HILAS    L R+ LRLDYL+++L  LT+PLK + KDEAVQ
Sbjct: 743  LGKYSTTNKNRRLLEDVHSHILASQQANLDRDALRLDYLTLILRELTDPLKKMSKDEAVQ 802

Query: 826  AVLDFMDEYSLSQEDFDTIVELSKFQGHLDPLKSIPPAVKAALTKGYKQNEQSRRVRTAD 647
             V++FMD YSLSQEDFDTIVE+SKF+GH  P+  I PAVK+ALTK YKQ   SR VR AD
Sbjct: 803  KVVEFMDTYSLSQEDFDTIVEVSKFKGHPSPMDGIQPAVKSALTKAYKQGSSSRVVRAAD 862

Query: 646  LIPALQIPGQKKAPKTKRVAKLLNTDEGEFPLNXXXXXXXXXXXXXXXXXXXXXXXQG-- 473
            LI    IPG KK P  KRVA +L   E   P                             
Sbjct: 863  LI---NIPGMKK-PLKKRVAAILEPVEESLPEENGLASAEDDEDGSSDAENNDELVPADS 918

Query: 472  -IKLSLEEDKPKGLEIELDIKGR---EXXXXXXXXXXXXXSNNGRAKAGAEAKGVKRKR 308
              KL L+ DK KG++++LD+K                    + G+A AG  + G KRKR
Sbjct: 919  TPKLDLQSDKKKGIQVQLDLKSNGDGPRGKKAPAARSRATGSGGKAAAGGGSAG-KRKR 976



 Score =  163 bits (413), Expect(2) = 0.0
 Identities = 83/105 (79%), Positives = 92/105 (87%)
 Frame = -2

Query: 2588 PPHKGEKEVPQGAENCLSGLTFVISGTLDSLEREEAEDLIKSHGGRITTSVSKKTSYLLA 2409
            PPHKGEKEVP+GA +CLSGLTFVISGTLDSLEREEA DLIK +GGR+T S+SKKTSYLLA
Sbjct: 200  PPHKGEKEVPEGAPDCLSGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTSYLLA 259

Query: 2408 DEDIGGRKSQKAKELGVKFLTEDGLFEMIRKSKPPQPSAKEPPNK 2274
            DEDIGG KS KAK+LGV FLTEDGLF++IRKSKP    AK P +K
Sbjct: 260  DEDIGGVKSNKAKDLGVPFLTEDGLFDLIRKSKP----AKAPVDK 300


>XP_016714165.1 PREDICTED: replication factor C subunit 1 [Gossypium hirsutum]
          Length = 992

 Score =  665 bits (1717), Expect(2) = 0.0
 Identities = 355/644 (55%), Positives = 445/644 (69%), Gaps = 1/644 (0%)
 Frame = -3

Query: 2224 NSNKALQTSKAETAMWTEKYRPKTPNDIVGNQTIVKQLHEWLANWENEHLNTGEKGXXXK 2045
            ++ K  Q  +  +  WTEKYRPK PN+I GNQ++VKQLH+WL  W  + L TG KG    
Sbjct: 361  SAKKRGQPVQHSSLPWTEKYRPKVPNEITGNQSLVKQLHDWLTQWNKQFLGTGSKG---- 416

Query: 2044 KGNKRTGAGNKSSNTSKKAVIMSGPPGIGKTTAARLVSQMLGFETIEVNASDSRGKADSK 1865
            KG K+  AG      +KKAV++SG PGIGKTT+A+LVSQMLGF+TIEVNASDSRGKAD+ 
Sbjct: 417  KGKKQNDAG------AKKAVLLSGTPGIGKTTSAKLVSQMLGFQTIEVNASDSRGKADAN 470

Query: 1864 IVKGISGSTANSIKEMITNATIHRGLTNGGK-KSVLIMDEVDGMSGGDRGGVSDLXXXXX 1688
            + KGI GS ANSIKE+++N  +   +      K+VLIMDEVDGMS GDRGG++DL     
Sbjct: 471  VSKGIGGSNANSIKELVSNEALGVNMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIK 530

Query: 1687 XXXXXXXXXCNDRYSQKLKSLMNSCLPLNFRKPTKQQMAKRLRQVAELEGIKVDEAALEE 1508
                     CNDRYSQKLKSL+N CL L++RKPTKQQMAKRL QVA  EG++V+E ALEE
Sbjct: 531  ISKIPIICICNDRYSQKLKSLVNYCLLLSYRKPTKQQMAKRLMQVANAEGLQVNEIALEE 590

Query: 1507 LGERVNGDMRMALNQLQYMSLSFSAIKYADIKSRLKDGGKDEDITPFTAANKLLGVESSR 1328
            L ERVNGDMRMALNQLQYMSLS S I Y DIK RL    KDED++PFTA +KL G    +
Sbjct: 591  LAERVNGDMRMALNQLQYMSLSMSVINYNDIKQRLLSSSKDEDMSPFTAVDKLFGFNGGK 650

Query: 1327 LIMDEKMDLCMSDPDLVPLLIQENYLNYKPNAAGRDVDGSRRMDLISRAADSIADGDIIN 1148
            L MDE++DL MSDPDLVPLL+QENY+NY+P++ G+D  G +RM+ I+RAA+SI DGDIIN
Sbjct: 651  LRMDERIDLSMSDPDLVPLLVQENYINYRPSSIGKDDSGIKRMNSIARAAESIGDGDIIN 710

Query: 1147 KQIRRYQQWQHSQMGAFASSIIPSAFIHGYRETFVQGEQNFNRFGAWLGKNSTFGKNTRL 968
             QIRRY+QWQ SQ  A +S IIP+A +HG RET  QGE+NFNRFG WLGKNST  KN RL
Sbjct: 711  VQIRRYRQWQLSQTSALSSCIIPAALLHGQRETLEQGERNFNRFGGWLGKNSTMSKNYRL 770

Query: 967  LSDVHVHILASSACELSRENLRLDYLSVLLTRLTNPLKTLPKDEAVQAVLDFMDEYSLSQ 788
            L D+HVH LAS      RE LRL+YL++LL RL NPL+ +PKDEAV+ VL+ M+ YS+SQ
Sbjct: 771  LEDLHVHFLASRESCSGRETLRLEYLTILLKRLINPLRDMPKDEAVKQVLECMNAYSISQ 830

Query: 787  EDFDTIVELSKFQGHLDPLKSIPPAVKAALTKGYKQNEQSRRVRTADLIPALQIPGQKKA 608
            EDFDTIVELSKFQG+ +P++ IPPAVKAALTK YK+  ++R +R ADL+    +PG KKA
Sbjct: 831  EDFDTIVELSKFQGYPNPMEGIPPAVKAALTKAYKEGSKTRIIRAADLV---TLPGIKKA 887

Query: 607  PKTKRVAKLLNTDEGEFPLNXXXXXXXXXXXXXXXXXXXXXXXQGIKLSLEEDKPKGLEI 428
            PK +  A L  +D+     N                       + ++  L+    KG+E+
Sbjct: 888  PKKRIAAILEPSDDVLGEENGDELPENDENTSDTEDLEGTTNGEKLQAELQSLNSKGIEV 947

Query: 427  ELDIKGREXXXXXXXXXXXXXSNNGRAKAGAEAKGVKRKR*NGS 296
            ++++KG               + +GRAK G  A   ++K   GS
Sbjct: 948  QMELKG-------TGNSSAKKAPSGRAKGGGRAASAEKKGGRGS 984



 Score =  162 bits (410), Expect(2) = 0.0
 Identities = 81/105 (77%), Positives = 89/105 (84%)
 Frame = -2

Query: 2588 PPHKGEKEVPQGAENCLSGLTFVISGTLDSLEREEAEDLIKSHGGRITTSVSKKTSYLLA 2409
            PPHKGEKEVP+GA +CL+GLTFVISGTLDSLEREEAEDLIK +GGR+T SVSKKT+YLL 
Sbjct: 224  PPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEAEDLIKRYGGRVTGSVSKKTNYLLC 283

Query: 2408 DEDIGGRKSQKAKELGVKFLTEDGLFEMIRKSKPPQPSAKEPPNK 2274
            DEDIGGRKS KAKELG KFLTEDGLF+MIR S   +   K   NK
Sbjct: 284  DEDIGGRKSSKAKELGTKFLTEDGLFDMIRASNHGKAPLKGQSNK 328