BLASTX nr result
ID: Ephedra29_contig00006829
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra29_contig00006829
(2427 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJA90769.1 DNA-directed RNA polymerase V largest subunit [Ephedr... 1538 0.0
AJA90784.1 DNA-directed RNA polymerase V largest subunit [Pinus ... 669 0.0
AJA90776.1 DNA-directed RNA polymerase V largest subunit [Ginkgo... 615 0.0
AJP06335.1 NRPD1b [Pinus tabuliformis] 582 e-180
XP_011620861.1 PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA ... 387 e-112
ERM99420.1 hypothetical protein AMTR_s00131p00068700 [Amborella ... 387 e-112
AJA90763.1 DNA-directed RNA polymerase V largest subunit like [E... 384 e-111
AQK60576.1 DNA-directed RNA polymerase V subunit 1 [Zea mays] 376 e-108
KDP40529.1 hypothetical protein JCGZ_24528 [Jatropha curcas] 376 e-108
XP_012068654.1 PREDICTED: DNA-directed RNA polymerase V subunit ... 376 e-108
OMO87191.1 RNA polymerase, alpha subunit [Corchorus olitorius] 374 e-108
XP_020090098.1 DNA-directed RNA polymerase V subunit 1 [Ananas c... 372 e-107
OMP00131.1 RNA polymerase, alpha subunit [Corchorus capsularis] 372 e-107
XP_010238829.1 PREDICTED: DNA-directed RNA polymerase V subunit ... 372 e-107
AQK60584.1 DNA-directed RNA polymerase V subunit 1, partial [Zea... 368 e-107
AQK60579.1 DNA-directed RNA polymerase V subunit 1 [Zea mays] 368 e-107
KJB67890.1 hypothetical protein B456_010G216600 [Gossypium raimo... 370 e-106
KJB67889.1 hypothetical protein B456_010G216600 [Gossypium raimo... 370 e-106
XP_012449583.1 PREDICTED: DNA-directed RNA polymerase V subunit ... 370 e-106
AQK60587.1 DNA-directed RNA polymerase V subunit 1 [Zea mays] 368 e-106
>AJA90769.1 DNA-directed RNA polymerase V largest subunit [Ephedra trifurca]
Length = 2093
Score = 1538 bits (3983), Expect = 0.0
Identities = 755/809 (93%), Positives = 768/809 (94%)
Frame = -1
Query: 2427 ATLKNDLSEISKLIRYMGVGSYQTNILSQVERGVKDLQNKIIREIPSDNSFIKMIDCTSS 2248
ATLKNDLSEISKLIRYMGVGSYQTNILSQVERGVK+LQNKIIREIPS NSFIKMIDCTSS
Sbjct: 770 ATLKNDLSEISKLIRYMGVGSYQTNILSQVERGVKELQNKIIREIPSSNSFIKMIDCTSS 829
Query: 2247 KSTSRIVQQVGFLGIQFFHGKNAIPSDWQKRLHTHLPCGESSFLQEYEVESPEVHGFITS 2068
KSTSR+VQQVGFLGIQFFHGKNAIPSDWQKRLHTHLPCGESSFLQEYEVESPEVHGFITS
Sbjct: 830 KSTSRLVQQVGFLGIQFFHGKNAIPSDWQKRLHTHLPCGESSFLQEYEVESPEVHGFITS 889
Query: 2067 SFISGLNPCETFIHSVHSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGN 1888
SFISGLNPCE FIHSVHSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGN
Sbjct: 890 SFISGLNPCEAFIHSVHSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGN 949
Query: 1887 FLVQFQYGKFDDNGXXXXXXSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVS 1708
FLVQFQYGKFDDNG SGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVS
Sbjct: 950 FLVQFQYGKFDDNGSSSESSSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVS 1009
Query: 1707 PWEILEETLKGRDNGVLKHRDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGI 1528
PWEILEETLKGRDNGVLKHRDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAG+
Sbjct: 1010 PWEILEETLKGRDNGVLKHRDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGL 1069
Query: 1527 QDALKKEILESFAVNIFVEYQERWFDAELRAPLLGHIQLDAKRLMGASLSPATLEGFLYD 1348
Q+ALKK+ILESFAVNIFVEYQERWFDAELRAPLLGHIQLDAKRLM SLSPATLE FLYD
Sbjct: 1070 QNALKKQILESFAVNIFVEYQERWFDAELRAPLLGHIQLDAKRLMEGSLSPATLEDFLYD 1129
Query: 1347 NLRKKSHPLNSFLDNLRLQACDACDIAQRSGNDGFAKPCLHFALTKESYLASKGHSHSFY 1168
NLRKKSHPLNSFLDNLRLQACDACDIAQRSGNDGFAKPCLHFALTKESYLASKGHSHSFY
Sbjct: 1130 NLRKKSHPLNSFLDNLRLQACDACDIAQRSGNDGFAKPCLHFALTKESYLASKGHSHSFY 1189
Query: 1167 SDLYLMVDVLYPRLAETTVKGDDRIEAVRISWNNQESKTWVASKKGTRNKXXXXXXXXXX 988
SDLYLMVDVLYPRLAETTVKGDDRIEAVRISWNNQESKTWVASKKGTRNK
Sbjct: 1190 SDLYLMVDVLYPRLAETTVKGDDRIEAVRISWNNQESKTWVASKKGTRNKDGDIVVEIDL 1249
Query: 987 XXXXVTQRGDAWEKALHSLLPFMELLDDSRCIPYSVHEVYKLLGVVAAYQLIIQRLTLAV 808
VTQRGDAWEKALHSLLPFMELLDDSRCIPYSVHEVYKLLGV AAYQLIIQRLTLA+
Sbjct: 1250 IEEEVTQRGDAWEKALHSLLPFMELLDDSRCIPYSVHEVYKLLGVAAAYQLIIQRLTLAL 1309
Query: 807 ELLGKGSYKNHLLLIASCMTLTRKVIAYNAAGFKDLYNSMKYPVPFTEGTLKTPIKSFER 628
ELLGKG+YKNHLLLIASCMTLT KVIAYNAAGFKDLYNSMKYPVPFTEGTLKTPIKSFER
Sbjct: 1310 ELLGKGAYKNHLLLIASCMTLTGKVIAYNAAGFKDLYNSMKYPVPFTEGTLKTPIKSFER 1369
Query: 627 AAEEGVVDRLSGSVASCCWGKRAPVGTGSNFEIFWKDLEGISKPLEEQCNELDAYETLEV 448
A+EEGVVDRLSGSVASCCWGKRAPVGTGSNFEIFWKDLEGISKPLEEQCNELDAYETLEV
Sbjct: 1370 ASEEGVVDRLSGSVASCCWGKRAPVGTGSNFEIFWKDLEGISKPLEEQCNELDAYETLEV 1429
Query: 447 LGVDSEVEKVKPSSLCIGEDMDMDICLQSLTNGSIFGNKVGTDSFPRNKQSNFGRNKPAM 268
LGVDSE EKVKPSSLCIGEDMD+D+CLQSLTNG IFGNK GTDSFPRNK SNFGRNKPAM
Sbjct: 1430 LGVDSEGEKVKPSSLCIGEDMDLDVCLQSLTNGCIFGNKAGTDSFPRNKPSNFGRNKPAM 1489
Query: 267 DQDTSCWNQQQATNGDGPDWNLPSSAADDVGWNKPASNGDGAAWNQPSSVTEGVAWSKPA 88
+QDTSCWNQQQATNGDGPDWNLPSSAADD+GWNKPASNGDGAAWNQ +S E V W KPA
Sbjct: 1490 NQDTSCWNQQQATNGDGPDWNLPSSAADDIGWNKPASNGDGAAWNQTTSAMEDVGWGKPA 1549
Query: 87 SNGDGADWNQSNQPTSAIEDVGWGKPVSN 1
SNGDG DWNQ NQ TSA EDVGWGKPVSN
Sbjct: 1550 SNGDGVDWNQPNQSTSATEDVGWGKPVSN 1578
>AJA90784.1 DNA-directed RNA polymerase V largest subunit [Pinus canariensis]
Length = 2705
Score = 669 bits (1725), Expect = 0.0
Identities = 365/809 (45%), Positives = 495/809 (61%), Gaps = 18/809 (2%)
Frame = -1
Query: 2421 LKNDLSEISKLIRYMGVGSYQTNILSQVERGVKDLQNKIIREIPSDNSFIKMIDCTSSKS 2242
L N+L+EIS+L++++ G Y+ I+SQVE+ + +Q + + I S +SF M+D +++S
Sbjct: 862 LGNELTEISRLMKHVRGGRYENAIISQVEKHLHGVQENVTKAISSASSFFLMVDSGNARS 921
Query: 2241 TSRIVQQVGFLGIQFFHGKNAIPSDWQKRLHTHLPCGESSFLQEYEVE-SPEVHGFITSS 2065
++VQQ+GFLG+Q F G+ P DW ++L +HLP S L ++ + SPEV G + SS
Sbjct: 922 AKKVVQQLGFLGLQMFQGRKTFPRDWLEKLSSHLPLNGSLPLDPHKKDDSPEVCGLVKSS 981
Query: 2064 FISGLNPCETFIHSVHSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNF 1885
++ GLNPCE FIHSV SREGL QKMG+KEPG LFKNLMAFLRD+ +CYDGTVRNACG F
Sbjct: 982 YVFGLNPCEAFIHSVSSREGLFCQKMGMKEPGTLFKNLMAFLRDLKICYDGTVRNACGKF 1041
Query: 1884 LVQFQYGKFDDN---GXXXXXXSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKS 1714
LVQF+YG + + SG +++S+PG+PVG LAAT+IA+PAYKA D S QK+
Sbjct: 1042 LVQFEYGNRNSSVACNSSNKRASGSSLDQSSPGEPVGTLAATAIANPAYKALVD-SFQKN 1100
Query: 1713 VSPWEILEETLKGRDNGVLKHRDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAA 1534
+SPW+IL+ETL R N L+ DR+V+L+M++CC E+K AA
Sbjct: 1101 ISPWDILKETLMSRYNSALQPNDRRVILHMRSCCAEETHFEEK---------------AA 1145
Query: 1533 GIQDALKKEILESFAVNIFVEYQERWFDAELRAPLLGHIQLDAKRLMGASLSPATLEGFL 1354
IQ++LK+ L+ FA+ I VEYQ RW ++ LRAPL+GHIQLD + L L TL L
Sbjct: 1146 RIQESLKRIPLKDFALQIVVEYQSRWQESLLRAPLIGHIQLDKRLLRAEKLLLRTLHRNL 1205
Query: 1353 YDNLRKKSHPLNSFLDNLRLQACDACDIAQRSGNDGFAKPCLHFALTKESYLASKGHSHS 1174
++ K +HPL + L L CD+C++AQ+ F PCLHFAL + S G S
Sbjct: 1206 NAHIIKDAHPLKELREKLMLHVCDSCNVAQKYREGTFEAPCLHFALRNNESIVSGGSSSY 1265
Query: 1173 FYSDLYLMVDVLYPRLAETTVKGDDRIEAVRISWNNQESKTWVASKKGTRNKXXXXXXXX 994
L MV+++YP L ETT KGDDRIE V ISWN S +WV + ++
Sbjct: 1266 QDDILDTMVNIIYPSLLETTAKGDDRIETVNISWNVVGSASWVPNLTCSKKDKGEIMVEI 1325
Query: 993 XXXXXXVTQRGDAWEKALHSLLPFMELLDDSRCIPYSVHEVYKLLGVVAAYQLIIQRLTL 814
V Q GDAW+ L + LPFM+LLDDSRCIPYS+HEVY+LLGV +Y L++QRL+L
Sbjct: 1326 VVEANEVKQHGDAWKIVLDACLPFMDLLDDSRCIPYSIHEVYQLLGVATSYPLVVQRLSL 1385
Query: 813 AVELLGKGSYKNHLLLIASCMTLTRKVIAYNAAGFKDLYNSMKYPVPFTEGTLKTPIKSF 634
A++++GK ++ HLLL++ CMT T + YN AG++D Y+ M + VPFTE TLKTPIK F
Sbjct: 1386 ALDMIGKDVFREHLLLVSDCMTYTGNIFGYNPAGYRDFYHCMNFSVPFTESTLKTPIKCF 1445
Query: 633 ERAAEEGVVDRLSGSVASCCWGKRAPVGTGSNFEIFWKDLEGISKPLEEQCNELDAYETL 454
ERAAE+GV D LSG+VASC WG+RAPVGTGS+FEI W D E +PL Q +LD E
Sbjct: 1446 ERAAEKGVKDVLSGAVASCSWGRRAPVGTGSDFEILWGDTEEAKEPLVYQHKQLDVCELF 1505
Query: 453 EVLGVDSEVEKVKPSSLCIGEDMDMDICLQSLTNGSIFGNKVGTDSFPRNKQSNFGR--- 283
E+LG +++ PSSLC+G D+D L+ + ++ D F +Q +F
Sbjct: 1506 EILGRAPNKKEMLPSSLCLGVDVD---DLKDEEGKFSYFSRPSDDIFGFGEQPDFENPVA 1562
Query: 282 NKPAMDQD-----TSCWNQQQATNGDGPDWNLPSSAA---DDVGWNKPAS-NGDGAAWNQ 130
N P + TS WN + + W +S + D GW + S N D +Q
Sbjct: 1563 NSPVQEDSSNKFLTSNWNSEDKSPIQTSGWGCSTSNSEERDKSGWGENISINMDRLKIDQ 1622
Query: 129 PSSVTEGVAWSKPASNGD--GADWNQSNQ 49
S SK NG G W + Q
Sbjct: 1623 QSEANGWNTTSKATENGSDCGNGWGEKRQ 1651
>AJA90776.1 DNA-directed RNA polymerase V largest subunit [Ginkgo biloba]
Length = 2506
Score = 615 bits (1587), Expect = 0.0
Identities = 344/809 (42%), Positives = 480/809 (59%), Gaps = 7/809 (0%)
Frame = -1
Query: 2421 LKNDLSEISKLIRYMGVGSYQTNILSQVERGVKDLQNKIIREIPSDNSFIKMIDCTSSKS 2242
+++ L E +++M S + +SQ++ + ++Q ++++ I + +S + M+D +S
Sbjct: 851 IRHKLDEGFPCMKHMRGESGENIAVSQLQNSLLEMQERVMKCITNTSSLVSMVDNGDIRS 910
Query: 2241 TSRIVQQVGFLGIQFFHGKNAIPSDWQKRLHTHLPCGESSFLQEY-EVESPEVHGFITSS 2065
TS++VQQ+GF+G+Q F GK A P++W RL +HLPC S + Y E +S EVHGF+ SS
Sbjct: 911 TSKVVQQLGFVGLQLFQGKKAFPNEWSNRLSSHLPCNRSHTFELYGENDSSEVHGFVKSS 970
Query: 2064 FISGLNPCETFIHSVHSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNF 1885
F+ GLNPCE+FIHS+ SREGLL QKMGLK+PG+LFKNLMAFLRD+ +CYDGTVRNACG F
Sbjct: 971 FVDGLNPCESFIHSLSSREGLLCQKMGLKDPGILFKNLMAFLRDLIICYDGTVRNACGKF 1030
Query: 1884 LVQFQYGKFDD-NGXXXXXXSGHF---VEKSTPGDPVGILAATSIASPAYKAFSDASTQK 1717
LVQF YG + G + + S G+PVGILAAT+IA PAYK D S Q
Sbjct: 1031 LVQFHYGSKNSLEATECSSNQGGYDASLGASPAGEPVGILAATAIAYPAYKGLLD-SAQN 1089
Query: 1716 SVSPWEILEETLKGRDNGVLKHRDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIA 1537
++SPW+IL+ETL R N L+ DR+++L++K+ DV C EK A
Sbjct: 1090 NLSPWDILQETLTSRYNSALRPNDRRIILHLKD------------------DVRCEEK-A 1130
Query: 1536 AGIQDALKKEILESFAVNIFVEYQERWFDAELRAPLLGHIQLDAKRLMGASLSPATLEGF 1357
A IQ+ L K L++FAV I +EYQ+ W + +RAPL+GHIQL+ K L LS A L
Sbjct: 1131 ALIQEELMKIPLKTFAVYIVIEYQKDWQGSLIRAPLVGHIQLNKKLLQETKLSLADLICK 1190
Query: 1356 LYDNLRKKSHPLNSFLDNLRLQACDACDIAQRSGNDGFAKPCLHFALTKESYLASKGHSH 1177
L + +++K HPLN+ D L L C+ C++A++ G F PCLHFAL + L
Sbjct: 1191 LNNRIKEKGHPLNTLFDKLILHTCEFCNVAKKYGGKDFTMPCLHFALRNDDNLIRNDVLL 1250
Query: 1176 SFYSDLYLMVDVLYPRLAETTVKGDDRIEAVRISWNNQESKTWVA-SKKGTRNKXXXXXX 1000
+ L MV+ +YP++ ETT+KGDDRIE V+ISWN+ S +WV S +N+
Sbjct: 1251 YEDNTLDTMVNKIYPKILETTIKGDDRIETVKISWNHVGSASWVPRSMHPIKNEKGEIMV 1310
Query: 999 XXXXXXXXVTQRGDAWEKALHSLLPFMELLDDSRCIPYSVHEVYKLLGVVAAYQLIIQRL 820
V Q GDAW + L FM LLD RCIPYS+HE YKLLG+ AYQLI+QRL
Sbjct: 1311 EVVVEAKEVKQHGDAWRIVFDACLSFMHLLDARRCIPYSIHEAYKLLGIPTAYQLIVQRL 1370
Query: 819 TLAVELLGKGSYKNHLLLIASCMTLTRKVIAYNAAGFKDLYNSMKYPVPFTEGTLKTPIK 640
++ ++ +GKG ++ HLLL++ CMT T ++ +N AG++D Y M++PVPFTEGTL+ PIK
Sbjct: 1371 SVPLKTIGKGVFREHLLLVSDCMTYTGNILGFNPAGYRDFYRCMRFPVPFTEGTLRMPIK 1430
Query: 639 SFERAAEEGVVDRLSGSVASCCWGKRAPVGTGSNFEIFWKDLEGISKPLEEQCNELDAYE 460
FE AAE G D +SG+VASC WGKRA VGTGS+FEI W D++ + P EQ ++D +
Sbjct: 1431 CFEGAAERGEKDTISGAVASCSWGKRAHVGTGSDFEILWHDIQEVKGPRAEQQEQVDVCD 1490
Query: 459 TLEVLGVDSEVEKVKPSSLCIGEDMDMDICLQSL-TNGSIFGNKVGTDSFPRNKQSNFGR 283
+++G+ + K SSLC+G D D C+ +L + K+ T + +S+
Sbjct: 1491 FFDIVGM-APCRKDLSSSLCLGTDFDDLNCVANLPIEEEVDEKKIFTPNCNSPVKSSIEM 1549
Query: 282 NKPAMDQDTSCWNQQQATNGDGPDWNLPSSAADDVGWNKPASNGDGAAWNQPSSVTEGVA 103
+ NG GPD DD G SN D + P S+ +
Sbjct: 1550 DGWGCSLQKDQNKDLNVHNGWGPD-------EDDNGKKTFTSNWD----SSPKSLIQTNG 1598
Query: 102 WSKPASNGDGADWNQSNQPTSAIEDVGWG 16
W G D NQ + + GWG
Sbjct: 1599 WESSL----GKDQNQYLNVHNDTQSNGWG 1623
>AJP06335.1 NRPD1b [Pinus tabuliformis]
Length = 2530
Score = 582 bits (1500), Expect = e-180
Identities = 339/822 (41%), Positives = 470/822 (57%), Gaps = 31/822 (3%)
Frame = -1
Query: 2421 LKNDLSEISK-LIRYMGVGSYQTNILSQVERGVKDLQNKIIREIPSDNSFIKMIDCTSSK 2245
L N+L+EIS+ L++++ G Y +I+SQVE+ + +Q + + I S SF M+ + +
Sbjct: 862 LGNELTEISRRLMKHVRGGRYDNSIISQVEKNLLRVQENVTKPISSLGSFFLMVGSGNVR 921
Query: 2244 STSRIVQQVGFLGIQFFHGKNAIPSDWQKRLHTHLPCGESSFLQEYEVE-SPEVHGFITS 2068
S+ ++VQQ+GF+G+Q F + P DW K + + LP S L ++ + SPE+ G + S
Sbjct: 922 SSKKVVQQLGFVGLQIFQERKTFPRDWLKNISSRLPSNGSPPLDPHKKDDSPELCGLVKS 981
Query: 2067 SFISGLNPCETFIHSVHSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGN 1888
S++ LNP E FIHS++ R GL QKMG+KEPG FK M FL D+ +CY G V +A G
Sbjct: 982 SYVFELNPYEEFIHSIYCRGGLFCQKMGIKEPGTPFKKRMVFLLDLMICYGGIVIDAYGK 1041
Query: 1887 FLVQFQYGKFDDN---GXXXXXXSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQK 1717
FL QF+YG + + S ++ S+ + VG LAAT+IA+ AYKA D S QK
Sbjct: 1042 FLFQFEYGNKNSSVACNSLNKRESRSSLDHSSLAECVGTLAATAIANSAYKALVD-SFQK 1100
Query: 1716 SVSPWEILEETLKGRDNGVLKHRDRKVVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIA 1537
++S W+IL+ETL R N L+ DR+V+L+M++CC D T E+ A
Sbjct: 1101 NISHWDILKETLMSRYNSALQPNDRRVILHMRSCCA---------------DETHFEEKA 1145
Query: 1536 AGIQDALKKEILESFAVNIFVEYQERWFDAELRAPLLGHIQLDAKRLMGASLSPATLEGF 1357
A IQ++LK+ L+ FA+ I VEYQ RW ++ LRAPL+GHIQLD + L L TL
Sbjct: 1146 ARIQESLKRIPLKDFALQIVVEYQSRWQESLLRAPLVGHIQLDKRLLRAEKLLLRTLHRN 1205
Query: 1356 LYDNLRKKSHPLNSFLDNLRLQACDACDIAQRSGNDGFAKPCLHFALTKESYLASKGHSH 1177
L ++ K +HPL + L L CD+C++AQ+ F PCLHFAL + S G S
Sbjct: 1206 LNAHIIKDAHPLKELREKLMLHVCDSCNVAQKYREGTFEAPCLHFALRNNESIVSGGSSS 1265
Query: 1176 SFYSDLYLMVDVLYPRLAETTVKGDDRIEAVRISWNNQESKTWVASKKGTRNKXXXXXXX 997
L MV+++YP L ETT KGDDRIE V ISWN S +WV + ++
Sbjct: 1266 YQDDILDTMVNIIYPSLLETTAKGDDRIETVNISWNVVGSASWVPNLTCSKKDKGEIMVE 1325
Query: 996 XXXXXXXVTQRGDAWEKALHSLLPFMELLDDSRCIPYSVHEVYKLLGVVAAYQLIIQRLT 817
V Q GDAW+ L + LPFM+LLDD RCIPYS+HEVY+LLG+ +Y L++QRL+
Sbjct: 1326 IVVEANEVKQHGDAWKIVLDACLPFMDLLDDRRCIPYSIHEVYQLLGIATSYPLVVQRLS 1385
Query: 816 LAVELLGKGSYKNHLLLIASCMTLTRKVIAYNAAGFKDLYNSMKYPVPFTEGTLKTPIKS 637
LA++++GK ++ HLLL++ CMT T + YN AG++D Y+ M + VPFTE TLKTPIK
Sbjct: 1386 LALDMIGKDVFREHLLLVSDCMTYTGNIFGYNPAGYRDFYHCMNFSVPFTESTLKTPIKC 1445
Query: 636 FERAAEEGVVDRLSGSVASCCWGKRAPVGTGSNFEIFWKDLEGISKPLEEQ--------- 484
FERAAE+GV D LSG+VASC WG+RAPVGTGS+FEI W D E +PL Q
Sbjct: 1446 FERAAEKGVKDVLSGAVASCSWGRRAPVGTGSDFEILWGDTEEAKEPLVYQNVYSFNSVI 1505
Query: 483 --CN-ELDAYETLEVLGVDSEVEKVKPSSLCIGEDMDMDICLQSLTNGSIFGNKVGTDSF 313
C+ +LD E E+LG +++ PSSLC+G D+D L+ + ++ F
Sbjct: 1506 TFCHKQLDVCELFEILGRAPNKKEMLPSSLCLGVDVD---DLKDEEGKFSYFSRPSDVIF 1562
Query: 312 PRNKQSNFGR---NKPAMDQD-----TSCWNQQQATNGDGPDWNLP---SSAADDVGWNK 166
+Q +F N P + TS WN Q + W S D GW +
Sbjct: 1563 GFGEQPDFENPVANSPVQEDSSNKVLTSNWNSQDKSPIQTSGWGCSPSNSEERDKSGWGE 1622
Query: 165 PAS-NGDGAAWNQPSSVTEGVAWSKPASNGD--GADWNQSNQ 49
S N DG +Q S SK NG G W + Q
Sbjct: 1623 NISINMDGLKIDQQSEANGWNTSSKATENGSDCGNGWGEKRQ 1664
>XP_011620861.1 PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase V subunit
1 [Amborella trichopoda]
Length = 1907
Score = 387 bits (995), Expect = e-112
Identities = 269/811 (33%), Positives = 404/811 (49%), Gaps = 26/811 (3%)
Frame = -1
Query: 2421 LKNDLSEISKLIRYMGVGSYQTNILSQVERGVKDLQNKIIREIPSDNSFIKMIDCTSSKS 2242
+K+ + IS L+++M + I SQV + + D + I++ I +S +ID +SS++
Sbjct: 635 IKSKIKSISPLLKHMRSTDNEL-IESQVAKSLDDAKLPIVKFILKSSSLGGLIDSSSSQA 693
Query: 2241 TSRIVQQVGFLGIQFFHGKNAIPSDWQKRLHTHLPCGESSFLQEYEVESPEVHGFITSSF 2062
+++V+Q+GFLG+Q F D L + + + +Y ES G I S
Sbjct: 694 VNKVVEQIGFLGLQLFSRGKYYTKDLVDDLISFIQSKHVAKGFDYPTES---FGLIKSCL 750
Query: 2061 ISGLNPCETFIHSVHSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFL 1882
GLNP E ++SV REG + GL EPG+LFK+LMA LRDV +CYDGTVRN C N L
Sbjct: 751 FHGLNPYEELVYSVSVREGSVRSSKGLSEPGILFKHLMAVLRDVVICYDGTVRNVCSNLL 810
Query: 1881 VQFQYGKFDDNGXXXXXXSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPW 1702
VQF+YG G ++ G+PVGILAAT++++PAY A +S+Q + S W
Sbjct: 811 VQFEYG-----GNRKTVDVS-----ASAGEPVGILAATAVSNPAYAAVL-SSSQSNTSSW 859
Query: 1701 EILEETLKGRDNGVLKHRDRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQ 1525
+++E L + N + DR+VV+Y+++C CG KK+ C E +A +Q
Sbjct: 860 NLMKEILFCKQNSSEELDDRRVVVYLQDCHCG------KKY---------CKENMACMVQ 904
Query: 1524 DALKKEILESFAVNIFVEYQERWFDA----ELRAPLLGHIQLDAKRLMGASLSPATLEGF 1357
LK L+ F FV Y + ++ A L+GHI LD +L G +++ +
Sbjct: 905 RHLKGVPLKDFTAEFFVVYDNQIPTTSEIRQIEANLVGHIHLDKMQLSGLNVTVQDILLK 964
Query: 1356 LYDNLRKKSHPLNSFLDNLRLQACDACDIAQRSGNDGFAKPCLHFALTKESYLASKGHSH 1177
+ +++RKK+ P LR + + C + Q S + + PCL F K H
Sbjct: 965 VTNDIRKKNSPFRGHSKKLRFSSSEECRVGQASDGNWSSVPCLQF----------KYHDR 1014
Query: 1176 SFYSD-----LYLMVDVLYPRLAETTVKGDDRIEAVRISWNNQESKTWVASKKGTRNKXX 1012
D L+L V+ +YPRL E V+GD R+ V I W + ++ +WV +K + +
Sbjct: 1015 VLCGDDTGKVLHLFVNTIYPRLLEMIVQGDSRVNMVNIIWIDPDAPSWV--RKPCKKERG 1072
Query: 1011 XXXXXXXXXXXXVTQRGDAWEKALHSLLPFMELLDDSRCIPYSVHEVYKLLGVVAAYQLI 832
V QRGDAW L S LP M L+D R IPY + ++ + LG+ +A+ L
Sbjct: 1073 EIALEVVIDKNVVKQRGDAWRTFLDSCLPVMNLIDIKRSIPYGIKQIEEYLGISSAFDLT 1132
Query: 831 IQRLTLAVELLGKGSYKNHLLLIASCMTLTRKVIAYNAAGFKDLYNSMKYPVPFTEGTLK 652
QRL+ ++ + KG + HLLL+A M LT K++ +N +G+K L+ S+K P+PFTE TL
Sbjct: 1133 FQRLSKSLSKVAKGILREHLLLVADNMALTGKLVGFNTSGYKALFRSLKVPLPFTEATLY 1192
Query: 651 TPIKSFERAAEEGVVDRLSGSVASCCWGKRAPVGTGSNFEIFWKDLEGISKPLEEQCNEL 472
TP+K FE+AAE D LSG VASC WGK VGTG+ FE+ W + + + P E
Sbjct: 1193 TPMKCFEKAAEGRNKDSLSGIVASCSWGKLVAVGTGTRFEVTWNNKQ-VEVPHE---YST 1248
Query: 471 DAYETLEVLGVDSEVEKVKPSSLCIGEDMDMDICLQSLTNGSIFGNKVGTDSFPRNKQSN 292
D Y+ L ++ E + C+G D+D N F + + + +
Sbjct: 1249 DVYDFLHLVSTPGANE---IDNSCLGMDVDN-------MNEDKF-HAMSPEPLSAMDKPT 1297
Query: 291 FGRNKPAMDQDTSCWNQQQATNGDGPDWNLPSSAADDV----GWNKPASNGDGAA----- 139
F + +D D W G W++ S A GW + D A
Sbjct: 1298 FDGSPEVIDLDDD-WPHGNGKFGKS-SWDVAKSPARPSGGWGGWGVEEKSEDHQAATDNP 1355
Query: 138 -----WNQPSSVTEGVAWSKPASNG--DGAD 67
W + S E V +S SNG DG D
Sbjct: 1356 NGWGGWGKGKSDKEKVEFSTVKSNGWEDGGD 1386
>ERM99420.1 hypothetical protein AMTR_s00131p00068700 [Amborella trichopoda]
Length = 1916
Score = 387 bits (995), Expect = e-112
Identities = 269/811 (33%), Positives = 404/811 (49%), Gaps = 26/811 (3%)
Frame = -1
Query: 2421 LKNDLSEISKLIRYMGVGSYQTNILSQVERGVKDLQNKIIREIPSDNSFIKMIDCTSSKS 2242
+K+ + IS L+++M + I SQV + + D + I++ I +S +ID +SS++
Sbjct: 644 IKSKIKSISPLLKHMRSTDNEL-IESQVAKSLDDAKLPIVKFILKSSSLGGLIDSSSSQA 702
Query: 2241 TSRIVQQVGFLGIQFFHGKNAIPSDWQKRLHTHLPCGESSFLQEYEVESPEVHGFITSSF 2062
+++V+Q+GFLG+Q F D L + + + +Y ES G I S
Sbjct: 703 VNKVVEQIGFLGLQLFSRGKYYTKDLVDDLISFIQSKHVAKGFDYPTES---FGLIKSCL 759
Query: 2061 ISGLNPCETFIHSVHSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFL 1882
GLNP E ++SV REG + GL EPG+LFK+LMA LRDV +CYDGTVRN C N L
Sbjct: 760 FHGLNPYEELVYSVSVREGSVRSSKGLSEPGILFKHLMAVLRDVVICYDGTVRNVCSNLL 819
Query: 1881 VQFQYGKFDDNGXXXXXXSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPW 1702
VQF+YG G ++ G+PVGILAAT++++PAY A +S+Q + S W
Sbjct: 820 VQFEYG-----GNRKTVDVS-----ASAGEPVGILAATAVSNPAYAAVL-SSSQSNTSSW 868
Query: 1701 EILEETLKGRDNGVLKHRDRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAGIQ 1525
+++E L + N + DR+VV+Y+++C CG KK+ C E +A +Q
Sbjct: 869 NLMKEILFCKQNSSEELDDRRVVVYLQDCHCG------KKY---------CKENMACMVQ 913
Query: 1524 DALKKEILESFAVNIFVEYQERWFDA----ELRAPLLGHIQLDAKRLMGASLSPATLEGF 1357
LK L+ F FV Y + ++ A L+GHI LD +L G +++ +
Sbjct: 914 RHLKGVPLKDFTAEFFVVYDNQIPTTSEIRQIEANLVGHIHLDKMQLSGLNVTVQDILLK 973
Query: 1356 LYDNLRKKSHPLNSFLDNLRLQACDACDIAQRSGNDGFAKPCLHFALTKESYLASKGHSH 1177
+ +++RKK+ P LR + + C + Q S + + PCL F K H
Sbjct: 974 VTNDIRKKNSPFRGHSKKLRFSSSEECRVGQASDGNWSSVPCLQF----------KYHDR 1023
Query: 1176 SFYSD-----LYLMVDVLYPRLAETTVKGDDRIEAVRISWNNQESKTWVASKKGTRNKXX 1012
D L+L V+ +YPRL E V+GD R+ V I W + ++ +WV +K + +
Sbjct: 1024 VLCGDDTGKVLHLFVNTIYPRLLEMIVQGDSRVNMVNIIWIDPDAPSWV--RKPCKKERG 1081
Query: 1011 XXXXXXXXXXXXVTQRGDAWEKALHSLLPFMELLDDSRCIPYSVHEVYKLLGVVAAYQLI 832
V QRGDAW L S LP M L+D R IPY + ++ + LG+ +A+ L
Sbjct: 1082 EIALEVVIDKNVVKQRGDAWRTFLDSCLPVMNLIDIKRSIPYGIKQIEEYLGISSAFDLT 1141
Query: 831 IQRLTLAVELLGKGSYKNHLLLIASCMTLTRKVIAYNAAGFKDLYNSMKYPVPFTEGTLK 652
QRL+ ++ + KG + HLLL+A M LT K++ +N +G+K L+ S+K P+PFTE TL
Sbjct: 1142 FQRLSKSLSKVAKGILREHLLLVADNMALTGKLVGFNTSGYKALFRSLKVPLPFTEATLY 1201
Query: 651 TPIKSFERAAEEGVVDRLSGSVASCCWGKRAPVGTGSNFEIFWKDLEGISKPLEEQCNEL 472
TP+K FE+AAE D LSG VASC WGK VGTG+ FE+ W + + + P E
Sbjct: 1202 TPMKCFEKAAEGRNKDSLSGIVASCSWGKLVAVGTGTRFEVTWNNKQ-VEVPHE---YST 1257
Query: 471 DAYETLEVLGVDSEVEKVKPSSLCIGEDMDMDICLQSLTNGSIFGNKVGTDSFPRNKQSN 292
D Y+ L ++ E + C+G D+D N F + + + +
Sbjct: 1258 DVYDFLHLVSTPGANE---IDNSCLGMDVDN-------MNEDKF-HAMSPEPLSAMDKPT 1306
Query: 291 FGRNKPAMDQDTSCWNQQQATNGDGPDWNLPSSAADDV----GWNKPASNGDGAA----- 139
F + +D D W G W++ S A GW + D A
Sbjct: 1307 FDGSPEVIDLDDD-WPHGNGKFGKS-SWDVAKSPARPSGGWGGWGVEEKSEDHQAATDNP 1364
Query: 138 -----WNQPSSVTEGVAWSKPASNG--DGAD 67
W + S E V +S SNG DG D
Sbjct: 1365 NGWGGWGKGKSDKEKVEFSTVKSNGWEDGGD 1395
>AJA90763.1 DNA-directed RNA polymerase V largest subunit like [Ephedra trifurca]
Length = 2107
Score = 384 bits (986), Expect = e-111
Identities = 264/796 (33%), Positives = 407/796 (51%), Gaps = 27/796 (3%)
Frame = -1
Query: 2352 ILSQVERGVKDLQNKIIREIPSDNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGKNAIP 2173
+ S ++ V++ Q+ + + IP NS ++ S S +++ +Q GFLG Q + GK +P
Sbjct: 755 VFSSIQTHVQNGQSTLFKHIPQSNSLSAIVLAGSGHSINKLAEQTGFLGFQPYKGKEVLP 814
Query: 2172 SDWQKRLHTHLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCETFIHSVHSREGLLSQ 1993
++W K L + L +F ++ E HG I SS GLNP E I+++ +RE L +
Sbjct: 815 NNWSKWLLSSLSI---NFPGRTDINFCEAHGVIFSSIAEGLNPQEALINAISTREALFCK 871
Query: 1992 KMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKF--------DDNGXXX 1837
+G+KEPG LFKNLMA LRD+ +CYDGT R GN LVQF Y + +D
Sbjct: 872 FLGIKEPGKLFKNLMACLRDLVICYDGTTRTVQGNHLVQFNYDCYISESHSNTNDCFSEW 931
Query: 1836 XXXSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVL 1657
+ E+ PGDPVG+LAAT+IA+PAYK D S Q++V+ W +L+E+L R + L
Sbjct: 932 KGENCKLKEQIQPGDPVGMLAATAIANPAYKVLLD-SVQQNVNAWHLLKESLFRRFSSEL 990
Query: 1656 KHRDRKVVLYMKNCCGAGIFTEKKFLGMEKHD-VTCCEKIAAGIQDALKKEILESFAVNI 1480
+ DRKV+L ++ E D C EK+A IQ+ L++E L++F ++I
Sbjct: 991 QSNDRKVILRLRQ---------------EGCDHAHCLEKMALQIQNQLRQEQLKTFTLSI 1035
Query: 1479 FVEYQERWFDAEL-------RAPLLGHIQLDAKRLMGASLSPATLEGFLYDNLRKKSHPL 1321
V Y + EL R+ L+GH++LD L A +S + L ++ +K + L
Sbjct: 1036 EVRYHDIGSLEELDATCSTARSRLVGHVRLDKVLLQKAGMSAEYILLRLRKSIERKENSL 1095
Query: 1320 NSFLDNLRLQACDACDIAQRSGNDGFAKPCLHFALTKESYLASKGHSHSFYSDLYLMVDV 1141
+ D L L AC+ C + D PCLHFA+ KE L +KG S L ++V++
Sbjct: 1096 RKWSDKLLLAACEECYDTEGKQTD--PTPCLHFAI-KEGSLLTKG------SMLDILVNI 1146
Query: 1140 LYPRLAETTVKGDDRIEAVRISWNNQES--KTWVASKKGTRNKXXXXXXXXXXXXXXVTQ 967
+ P+L E VKGD+RI+ IS + +S + +A+ K + + +
Sbjct: 1147 VSPKLMECIVKGDNRIDDAIISQCHLKSVSRLPIANNKNSI-EDSDVIIEATISKGEAKK 1205
Query: 966 RGDAWEKALHSLLPFMELLDDSRCIPYSVHEVYKLLGVVAAYQLIIQRLTLAVELLGKGS 787
RGDAW+ + M+ LD C PYS+HE+ K+LG+ AAY ++++RL L+V ++G
Sbjct: 1206 RGDAWKIIQDACSTIMDALDSRSCEPYSIHEINKVLGISAAYNVLLKRLFLSVSMMGSPV 1265
Query: 786 YKNHLLLIASCMTLTRKVIAYNAAGFKDLYNSMKYPVPFTEGTLKTPIKSFERAAEEGVV 607
Y+ HL+LIA CM + V + AAG++D +SM PF+ L+ P+K FERAA +G
Sbjct: 1266 YRQHLVLIADCMCHSGTVNGFTAAGYRDFLSSMGTRSPFSIAALEVPLKWFERAAVKGAN 1325
Query: 606 DRLSGSVASCCWGKRAPVGTGSNFEIFWKDLEGISKPLEEQCNELDAYETLEVLG-VDSE 430
D LS +AS CWG+ VGTG +F++ W++ E L + C +AY+ LE +G + S+
Sbjct: 1326 DSLSSVLASSCWGQTPNVGTGGSFDVIWQNTEVARNNLAKVCRGEEAYDLLENIGTIPSD 1385
Query: 429 VEKVKPSSLCIGEDMDMDICLQSLTNGSIFGNKVGTDSFPRNKQSNFGRNKPAMDQDTSC 250
E S E + MD+ + + T P N + G+ K
Sbjct: 1386 TENSTDS--LFDEKISMDL-----------EDTLATTDIPMN--ISVGKEK--------L 1422
Query: 249 WNQQQATNG--DGPDWNLPSSAADDVGWNKPASNGDGAAWNQPSSVTEGVAWSKPASNGD 76
W Q N + ++ ++ +D GW K S DG S W N D
Sbjct: 1423 WQTQDGFNNTFEICAVDIHNNFSDGKGWGKTQSEADGLGNGNDDS-----KWLVSDDNHD 1477
Query: 75 ------GADWNQSNQP 46
+ W +S++P
Sbjct: 1478 IQGGWGLSSWEESSKP 1493
>AQK60576.1 DNA-directed RNA polymerase V subunit 1 [Zea mays]
Length = 1906
Score = 376 bits (966), Expect = e-108
Identities = 258/790 (32%), Positives = 395/790 (50%), Gaps = 21/790 (2%)
Frame = -1
Query: 2343 QVERGVKDLQNKIIREIPSDNSFIKMIDCTSSKSTSRIVQQVGFLGIQFF-----HGKNA 2179
+VE +K+++ +I + + +ID S S++VQQVGF+G+Q + + +
Sbjct: 663 RVENNLKNVKQQISDSVGKFSDLGLLIDPKKEASMSKVVQQVGFVGLQLYREGKLYSRRL 722
Query: 2178 IPSDWQKRLHTHLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCETFIHSVHSREGLL 1999
+ + ++ HL G+ EY PE +G + SS+ GLNP E IH++ +RE ++
Sbjct: 723 VEDCFTNFVNKHLAIGD-----EYP---PEAYGLVQSSYFHGLNPYEELIHAISTREAMI 774
Query: 1998 SQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXSGH 1819
GL EPG LFKNLMA LRDV +CYDGTVRN C N ++Q +YG+ D+
Sbjct: 775 RSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQLKYGEDDETDSSSVVP--- 831
Query: 1818 FVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRDRK 1639
PG+PVG+LAAT+I++PAYKA D+S + S WE ++E L+ R + +DRK
Sbjct: 832 ------PGEPVGVLAATAISNPAYKAVLDSSQSNNAS-WESMKEILQTRTSYKNDVKDRK 884
Query: 1638 VVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEYQER 1459
VVL++ +C A KKF C E+ A +Q LK+ L A +I +E+Q++
Sbjct: 885 VVLFLNDCSCA-----KKF---------CKERAALAVQSCLKRVTLGDCATDICIEHQKQ 930
Query: 1458 WF---DAELRAPLLGHIQLDAKRLMGASLSPATLEGFLYD---NLRKKSHPLNSFLDNLR 1297
+E L+GHI LD L ++S + + KK L +
Sbjct: 931 INLDGTSEAAPTLVGHIHLDKGHLERINISTQDILQKCQEVSGRFGKKKGHLCHIFKKIT 990
Query: 1296 LQACDACDIAQRSGNDGFAK-PCLHFALTKESYLASKGHSHSFYSDLYLMVDVLYPRLAE 1120
CD C Q + K PC+ FA + + L S S + ++ D + L +
Sbjct: 991 FATCD-CSFTQMPIDGKLHKVPCVQFAFSDDIVL-----SESIERAVNVIADSVCSVLLD 1044
Query: 1119 TTVKGDDRIEAVRISWNNQESKTWVASKKGTRN-KXXXXXXXXXXXXXXVTQRGDAWEKA 943
T +KGD RI+A ++ W ++ +WV K TR GDAW A
Sbjct: 1045 TIIKGDPRIQAAKVIWVESDAASWV---KHTRKVSKGESALEIIVEKDDAVSNGDAWRTA 1101
Query: 942 LHSLLPFMELLDDSRCIPYSVHEVYKLLGVVAAYQLIIQRLTLAVELLGKGSYKNHLLLI 763
+ + LP + L+D R IPY + +V +L+G+ A+ ++QRL+ V+++ KG K+HL+L+
Sbjct: 1102 IDACLPVLNLIDTRRSIPYGIQQVRELIGISCAFDQVVQRLSTTVKMVNKGVLKDHLILV 1161
Query: 762 ASCMTLTRKVIAYNAAGFKDLYNSMKYPVPFTEGTLKTPIKSFERAAEEGVVDRLSGSVA 583
A+ MT T +I +N AG+K + S+K VPFTE TL TP+K FE+AAE+ D L V+
Sbjct: 1162 ANSMTCTGNLIGFNIAGYKATFRSLKVQVPFTESTLFTPMKCFEKAAEKCDSDSLGCVVS 1221
Query: 582 SCCWGKRAPVGTGSNFEIFWKDLEGISKPLEEQCNELDAYETLEVLGVDSEVEK---VKP 412
S WGK A VGTGS+F+I W E K +E + L Y+ L ++ D E +
Sbjct: 1222 SSAWGKHAAVGTGSSFQILWN--ENQLKSNKEYGDGL--YDFLALVRTDQEKTDYMFLDD 1277
Query: 411 SSLCIGEDMDMDICLQSLTNGSIFGNKVGTDSFPRNKQSNFGRNKPAMDQDTSCWNQQQA 232
+ E+ D+CL +G++ G D+F + G + S W Q +
Sbjct: 1278 VDYLVEENAADDMCLSPEPDGTL-GKPTFEDNF-EEQNIQKGSSWEIGITTNSSWEQNAS 1335
Query: 231 TNGDGPDWNLPSSAADDVGWNKPASNGDGAAWN-----QPSSVTEGVAWSKPASNGDGAD 67
D DW SS KPA + +W Q +S T+ WS GDG +
Sbjct: 1336 VANDSGDWGGWSSGGGAAA--KPADQDN--SWEVHAKVQDNSTTDWGGWSVEKPTGDG-N 1390
Query: 66 WNQSNQPTSA 37
W +S+ P ++
Sbjct: 1391 WEKSSTPEAS 1400
>KDP40529.1 hypothetical protein JCGZ_24528 [Jatropha curcas]
Length = 1821
Score = 376 bits (965), Expect = e-108
Identities = 258/826 (31%), Positives = 400/826 (48%), Gaps = 23/826 (2%)
Frame = -1
Query: 2424 TLKNDLSEISKLIRYMGVGSYQTNILSQVERGVKDLQNKIIREIPSDNSFIKMIDCTSSK 2245
++ D IS L+ + +Y + Q+E ++ ++ ++ I +S +ID S
Sbjct: 485 SIHKDFKVISPLLSQLR-STYNELVELQLENHIRQVKLRVAEFIVRSSSIGDLIDYKSDS 543
Query: 2244 STSRIVQQVGFLGIQFFHGKNAIPSDWQKRLHTHLPCGESSFLQEYEVESPEVHGFITSS 2065
+ +++VQQ+GFLG+Q + + +H S + EY +G I S
Sbjct: 544 AMTKVVQQIGFLGLQISDRGKFYSKTLVEDMVSHFERKYPSEVVEYPSAQ---YGLIQSC 600
Query: 2064 FISGLNPCETFIHSVHSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNF 1885
F GL+P E +HS+ +RE ++ GL EPG LFKNLMA LRDV +CYDGTVRN C N
Sbjct: 601 FFHGLDPYEEMVHSISTREVIVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNS 660
Query: 1884 LVQFQYGKFDDNGXXXXXXSGHFVEKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVS 1708
++QF+YG +G + P G+PVG+LAAT++++PAYKA D ST S S
Sbjct: 661 IIQFEYG----------VKAGIKAQSLFPAGEPVGVLAATAMSNPAYKAVLD-STPSSNS 709
Query: 1707 PWEILEETLKGRDNGVLKHRDRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAG 1531
WE+++E L R N DR+++LY+ +C CG C EK A
Sbjct: 710 SWELMKEILLCRVNFKNDLTDRRIILYLNDCGCGRNY---------------CQEKAAYK 754
Query: 1530 IQDALKKEILESFAVNIFVEYQERWFDAELRAPLLGHIQLDAKRLMGASLSPATLEGFLY 1351
+++ L+K IL+ A + +EY+ + A++ L GHI LD +L +S +
Sbjct: 755 VKNHLQKVILKDIANHFMIEYKRQHTIADVG--LAGHIHLDKMKLENLKVSMEVIHQKCT 812
Query: 1350 D--NLRKKSHPLNSFLDNLRLQACDACDIAQRSGNDGFAKPCLHFALTKESYLASKGHSH 1177
+ N +K L F + + A C + ++ PCL F ++S + + S+
Sbjct: 813 ETVNFFRKKKKLALFFKRIEVSASQCCSFQESCADEWSGSPCLTF-FWQDSDIRIERISN 871
Query: 1176 SFYSDLYLMVDVLYPRLAETTVKGDDRIEAVRISWNNQESKTWVASKKGTRNKXXXXXXX 997
F D++ P L ET +KGD RI I+W + ++ TW+ + +R +
Sbjct: 872 LF-------ADMICPVLLETVIKGDHRISNANITWISPDTTTWI--RNPSRTQKGELALD 922
Query: 996 XXXXXXXVTQRGDAWEKALHSLLPFMELLDDSRCIPYSVHEVYKLLGVVAAYQLIIQRLT 817
V Q GDAW L S LP + L+D +R IPY++ ++ +LLGV A+ +QRL+
Sbjct: 923 VVIEKSAVKQSGDAWRIVLDSCLPVLHLIDTTRSIPYAIKQIQELLGVSCAFDQAVQRLS 982
Query: 816 LAVELLGKGSYKNHLLLIASCMTLTRKVIAYNAAGFKDLYNSMKYPVPFTEGTLKTPIKS 637
+V ++ KG K HL+L+A+ MT ++ +N+ G+K L S+ VPFT+ TL TP K
Sbjct: 983 TSVTIVAKGVLKEHLILLANSMTCAGNLVGFNSGGYKSLSRSLDVQVPFTDATLFTPRKC 1042
Query: 636 FERAAEEGVVDRLSGSVASCCWGKRAPVGTGSNFEIFWKDLEGISKPLEEQCNELDAYET 457
FERAAE+ VD LS VASC WGK VGTGS F++ W E +Q +D YE
Sbjct: 1043 FERAAEKCHVDTLSSIVASCSWGKNVAVGTGSRFDVLWDKKEACL----DQEGSIDVYEF 1098
Query: 456 LEVLGVDSEVEKVKPSSLCIGEDMDMDICLQSLTNGSIFGNKVGTDSFPRNKQSNFGRNK 277
L ++ + E+ S+ C+G D+D D+ L G D + + + NFG +K
Sbjct: 1099 LNMVRCSANGEE---STACLGADVD-DLMLDD-----------GMDDWNLSPEHNFGSDK 1143
Query: 276 P----------AMDQDTSCWNQ-QQATNG--DGPDWNLPSSAADD-----VGWNKPASNG 151
P +D + W + A NG G +W + D GW + A+
Sbjct: 1144 PTFEDRAEFQNCLDNQPADWEKASYAVNGSSSGGNWGGDKNMETDKENSWSGWGRNAAET 1203
Query: 150 DGAAWNQPSSVTE-GVAWSKPASNGDGADWNQSNQPTSAIEDVGWG 16
A + ++ +W A+ N GWG
Sbjct: 1204 QNALSTKAHEESDKSNSWDTAGGWQAQANGKAENNVAETDSWSGWG 1249
>XP_012068654.1 PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
Length = 1980
Score = 376 bits (965), Expect = e-108
Identities = 258/826 (31%), Positives = 400/826 (48%), Gaps = 23/826 (2%)
Frame = -1
Query: 2424 TLKNDLSEISKLIRYMGVGSYQTNILSQVERGVKDLQNKIIREIPSDNSFIKMIDCTSSK 2245
++ D IS L+ + +Y + Q+E ++ ++ ++ I +S +ID S
Sbjct: 644 SIHKDFKVISPLLSQLR-STYNELVELQLENHIRQVKLRVAEFIVRSSSIGDLIDYKSDS 702
Query: 2244 STSRIVQQVGFLGIQFFHGKNAIPSDWQKRLHTHLPCGESSFLQEYEVESPEVHGFITSS 2065
+ +++VQQ+GFLG+Q + + +H S + EY +G I S
Sbjct: 703 AMTKVVQQIGFLGLQISDRGKFYSKTLVEDMVSHFERKYPSEVVEYPSAQ---YGLIQSC 759
Query: 2064 FISGLNPCETFIHSVHSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNF 1885
F GL+P E +HS+ +RE ++ GL EPG LFKNLMA LRDV +CYDGTVRN C N
Sbjct: 760 FFHGLDPYEEMVHSISTREVIVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNS 819
Query: 1884 LVQFQYGKFDDNGXXXXXXSGHFVEKSTP-GDPVGILAATSIASPAYKAFSDASTQKSVS 1708
++QF+YG +G + P G+PVG+LAAT++++PAYKA D ST S S
Sbjct: 820 IIQFEYG----------VKAGIKAQSLFPAGEPVGVLAATAMSNPAYKAVLD-STPSSNS 868
Query: 1707 PWEILEETLKGRDNGVLKHRDRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAG 1531
WE+++E L R N DR+++LY+ +C CG C EK A
Sbjct: 869 SWELMKEILLCRVNFKNDLTDRRIILYLNDCGCGRNY---------------CQEKAAYK 913
Query: 1530 IQDALKKEILESFAVNIFVEYQERWFDAELRAPLLGHIQLDAKRLMGASLSPATLEGFLY 1351
+++ L+K IL+ A + +EY+ + A++ L GHI LD +L +S +
Sbjct: 914 VKNHLQKVILKDIANHFMIEYKRQHTIADVG--LAGHIHLDKMKLENLKVSMEVIHQKCT 971
Query: 1350 D--NLRKKSHPLNSFLDNLRLQACDACDIAQRSGNDGFAKPCLHFALTKESYLASKGHSH 1177
+ N +K L F + + A C + ++ PCL F ++S + + S+
Sbjct: 972 ETVNFFRKKKKLALFFKRIEVSASQCCSFQESCADEWSGSPCLTF-FWQDSDIRIERISN 1030
Query: 1176 SFYSDLYLMVDVLYPRLAETTVKGDDRIEAVRISWNNQESKTWVASKKGTRNKXXXXXXX 997
F D++ P L ET +KGD RI I+W + ++ TW+ + +R +
Sbjct: 1031 LF-------ADMICPVLLETVIKGDHRISNANITWISPDTTTWI--RNPSRTQKGELALD 1081
Query: 996 XXXXXXXVTQRGDAWEKALHSLLPFMELLDDSRCIPYSVHEVYKLLGVVAAYQLIIQRLT 817
V Q GDAW L S LP + L+D +R IPY++ ++ +LLGV A+ +QRL+
Sbjct: 1082 VVIEKSAVKQSGDAWRIVLDSCLPVLHLIDTTRSIPYAIKQIQELLGVSCAFDQAVQRLS 1141
Query: 816 LAVELLGKGSYKNHLLLIASCMTLTRKVIAYNAAGFKDLYNSMKYPVPFTEGTLKTPIKS 637
+V ++ KG K HL+L+A+ MT ++ +N+ G+K L S+ VPFT+ TL TP K
Sbjct: 1142 TSVTIVAKGVLKEHLILLANSMTCAGNLVGFNSGGYKSLSRSLDVQVPFTDATLFTPRKC 1201
Query: 636 FERAAEEGVVDRLSGSVASCCWGKRAPVGTGSNFEIFWKDLEGISKPLEEQCNELDAYET 457
FERAAE+ VD LS VASC WGK VGTGS F++ W E +Q +D YE
Sbjct: 1202 FERAAEKCHVDTLSSIVASCSWGKNVAVGTGSRFDVLWDKKEACL----DQEGSIDVYEF 1257
Query: 456 LEVLGVDSEVEKVKPSSLCIGEDMDMDICLQSLTNGSIFGNKVGTDSFPRNKQSNFGRNK 277
L ++ + E+ S+ C+G D+D D+ L G D + + + NFG +K
Sbjct: 1258 LNMVRCSANGEE---STACLGADVD-DLMLDD-----------GMDDWNLSPEHNFGSDK 1302
Query: 276 P----------AMDQDTSCWNQ-QQATNG--DGPDWNLPSSAADD-----VGWNKPASNG 151
P +D + W + A NG G +W + D GW + A+
Sbjct: 1303 PTFEDRAEFQNCLDNQPADWEKASYAVNGSSSGGNWGGDKNMETDKENSWSGWGRNAAET 1362
Query: 150 DGAAWNQPSSVTE-GVAWSKPASNGDGADWNQSNQPTSAIEDVGWG 16
A + ++ +W A+ N GWG
Sbjct: 1363 QNALSTKAHEESDKSNSWDTAGGWQAQANGKAENNVAETDSWSGWG 1408
>OMO87191.1 RNA polymerase, alpha subunit [Corchorus olitorius]
Length = 1956
Score = 374 bits (960), Expect = e-108
Identities = 264/825 (32%), Positives = 411/825 (49%), Gaps = 18/825 (2%)
Frame = -1
Query: 2421 LKNDLSEISKLIRYMGVGSYQTNILSQVERGVKDLQNKIIREIPSDNSFIKMIDCTSSKS 2242
++ D+ IS L+ Y +Y + Q+E +++ + + I ++F +ID S +
Sbjct: 635 IEKDVQLISPLL-YQLRSTYNELVGLQIENHIREAKVPVANFIRKSSAFGDLIDSKSDSA 693
Query: 2241 TSRIVQQVGFLGIQFFH-GKNAIPSDWQKRLHTHLPCGESSFLQEYEVESPEVH-GFITS 2068
+++VQQ+GFLG Q F GK + K L + S V+ P G I S
Sbjct: 694 VTKVVQQIGFLGQQLFDKGKF-----YSKTLVDDVAYQFQSIYPSDLVDYPSAEFGLIKS 748
Query: 2067 SFISGLNPCETFIHSVHSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGN 1888
F GL+P E +HS+ +RE ++ GL EPG LFKNLMA LRDV +CYDGTVRN N
Sbjct: 749 CFFRGLDPYEEMVHSISTREVIVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNVNSN 808
Query: 1887 FLVQFQYGKFDDNGXXXXXXSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVS 1708
++QFQYG + + G+PVG+LAAT++++PAYKA D ST S S
Sbjct: 809 SIIQFQYG-----------LNARTKPQFPAGEPVGVLAATAMSNPAYKAVLD-STPSSNS 856
Query: 1707 PWEILEETLKGRDNGVLKHRDRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAG 1531
WE+++E L+ + + + DR+V+LY+K+C CG +K+ C E A
Sbjct: 857 SWELMKEILQCKVSFKNELIDRRVILYLKDCDCG------RKY---------CQENAAYV 901
Query: 1530 IQDALKKEILESFAVNIFVEYQERWFDAELRAPLLGHIQLDAKRLMGASLSPATLEGFLY 1351
+++ L+K L+ A + +EY+++ +AE A L+GHI L+ + L ++S +
Sbjct: 902 VKNHLRKVTLKDAAKELIIEYKQQQAEAESEAGLVGHILLNKELLKELNVSMQEIHMKCQ 961
Query: 1350 DNL---RKKSHPLNSFLDNLRLQACDACDIAQRSGNDGFAKPCLHFALTKESYLASKGHS 1180
+ + RKK ++F L + C I Q G PCL F ++
Sbjct: 962 ETITSSRKKKLTADTF-KRADLFFNECCSIQQSCGGKWLDMPCLMFVCR---------NT 1011
Query: 1179 HSFYSDLYLMVDVLYPRLAETTVKGDDRIEAVRISWNNQESKTWVASKKGTRNKXXXXXX 1000
S L + D++YP L ET +KGD RI + I W + ++ TW+ + ++++
Sbjct: 1012 QDLDSSLQDLSDIIYPALLETVIKGDPRICSANIIWVSPDTTTWI--RNPSKSQKGELAL 1069
Query: 999 XXXXXXXXVTQRGDAWEKALHSLLPFMELLDDSRCIPYSVHEVYKLLGVVAAYQLIIQRL 820
V Q GDAW + LP + L+D R IPY++ +V LLG+ A++ +QRL
Sbjct: 1070 DVVLEKSAVKQNGDAWRTVMDCCLPVLNLIDTQRSIPYAIKQVQDLLGISCAFEQAVQRL 1129
Query: 819 TLAVELLGKGSYKNHLLLIASCMTLTRKVIAYNAAGFKDLYNSMKYPVPFTEGTLKTPIK 640
+ +V ++ KG K HL+L+A+ MT +I +N+ G+K L S+ VPFTE TL TP K
Sbjct: 1130 STSVSMVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKALCRSLNIQVPFTEATLFTPRK 1189
Query: 639 SFERAAEEGVVDRLSGSVASCCWGKRAPVGTGSNFEIFWKDLE-GISKPLEEQCNELDAY 463
FERAAE+ VD LS VASC WGK VGTGS F++ W E G +Q + +D Y
Sbjct: 1190 CFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFDVLWDHKEVGF-----DQRSGIDVY 1244
Query: 462 ETLEVLGVDSEVEKVKPSSLCIGEDMDMDICLQSLTNGSIFGNKVGTDSFPRNKQSNFGR 283
LG+ S + ++ C+GE++D + + + S+ + G
Sbjct: 1245 ---NFLGMLSSAKFPSSNTACLGEEVDDLMEVDEMGEWSM------------SPDHGAGS 1289
Query: 282 NKPAMDQDTSCWNQQQATNGDGPDWNLPSSAADDVG------WNKPASNGDGAAWNQPSS 121
+KP + + N + + W+ +S+ ++VG WNK A +GD A +
Sbjct: 1290 DKPVFEDAANFENDLEDRPAES-TWDKVASSTENVGWDALAAWNKNAEDGDKFA-EAGAG 1347
Query: 120 VTEGVAWSKPASNGDGADWNQSNQPT-SAIED----VGWGKPVSN 1
T+ WS +W S T +ED GWG S+
Sbjct: 1348 TTKQTEWS---------NWGTSKSKTQDFVEDQTDSSGWGMKKSD 1383
>XP_020090098.1 DNA-directed RNA polymerase V subunit 1 [Ananas comosus]
Length = 1800
Score = 372 bits (955), Expect = e-107
Identities = 255/842 (30%), Positives = 398/842 (47%), Gaps = 66/842 (7%)
Frame = -1
Query: 2343 QVERGVKDLQNKIIREIPSDNSFIKMIDCTSSKSTSRIVQQVGFLGIQFFHGKNAIPSDW 2164
+VE +K ++ I+ I +S +ID S + ++++QQ+GFLG+Q FH S
Sbjct: 665 RVENHLKSIKQPIVEFIVKFSSLGYLIDSKSDSAIAKVLQQLGFLGLQLFHEGKFYSSRL 724
Query: 2163 QKRLHTHLPCGESSFLQEYEVESP----EVHGFITSSFISGLNPCETFIHSVHSREGLLS 1996
+ S+F+ + E +G + SSF +GLNP E +H++ SRE L+
Sbjct: 725 VEDCF-------STFVNRFSTGGDKHPCEAYGLVKSSFYNGLNPYEELVHAISSREVLVR 777
Query: 1995 QKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXSGHF 1816
GL EPG LFKNLMA LRDV +CYDG+VRN C N ++QF YG DD+
Sbjct: 778 SSRGLTEPGTLFKNLMAILRDVVICYDGSVRNVCSNSVIQFDYG--DDDRVD-------L 828
Query: 1815 VEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRDRKV 1636
+ S PG+PVG+LAAT+I++PAYKA D+S Q + S WE+++E L + + DR+V
Sbjct: 829 IGLSPPGEPVGVLAATAISNPAYKAVLDSS-QSNNSSWELMKEILLTKVSYKNDVNDRRV 887
Query: 1635 VLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEYQERW 1456
+LY+ +C F KKF C E+ A +Q LK+ LE + +EYQ+
Sbjct: 888 ILYLNDC-----FCGKKF---------CKERAALAVQSCLKRVTLEDCVTDFLIEYQKEI 933
Query: 1455 F---DAELRAPLLGHIQLDAKRLMGASLSPA----TLEGFLYDNLRKKSHPLNSFLDNLR 1297
+ E + L+GHI LD +L + S T E + N +KK + +
Sbjct: 934 ILPGNPEPTSGLVGHIHLDKMQLESLNRSIDEVLHTCEEVILKNAKKKGQ-FSHLFKKIT 992
Query: 1296 LQACDACDIAQRSGNDGFAKPCLHFALTKESYLASKGHSHSFYSDLYLMVDVLYPRLAET 1117
L A + C I + ++ PCL F+ E+ S + F + ++ + +YP L +T
Sbjct: 993 LMASECCSIQKAKDSNLSRTPCLQFSYCDENVAPSCEY---FEGIVQVLANTVYPTLLDT 1049
Query: 1116 TVKGDDRIEAVRISWNNQESKTWVASKKGTRNKXXXXXXXXXXXXXXVTQRGDAWEKALH 937
VKGD R+ ++ W ++ +WV + T GDAW A+
Sbjct: 1050 IVKGDPRVHEAKVVWVGPDATSWVRNSSNTLK--GELAVEMVIEKSAAPHNGDAWRTAMD 1107
Query: 936 SLLPFMELLDDSRCIPYSVHEVYKLLGVVAAYQLIIQRLTLAVELLGKGSYKNHLLLIAS 757
+ LP M L+D R IPY V ++ +L G+ A+ ++R++ ++ + KG K+HL+L+AS
Sbjct: 1108 ACLPVMRLIDARRSIPYGVQQIRELFGISCAFDQAVERMSTSIRKVAKGVLKDHLILVAS 1167
Query: 756 CMTLTRKVIAYNAAGFKDLYNSMKYPVPFTEGTLKTPIKSFERAAEEGVVDRLSGSVASC 577
MT T K+ +N G+K + S+K VPFTE TL TP+K FERAAE+ D L V+SC
Sbjct: 1168 SMTCTGKLNGFNTGGYKATFRSLKVQVPFTEATLFTPMKCFERAAEKCHSDSLDSGVSSC 1227
Query: 576 CWGKRAPVGTGSNFEIFWKDLEGISKPLEEQCNELD----AYETLEVLGVDSEVEKVKPS 409
WGK +GTGS+F+I W ++ N+ D Y+ L ++ + + +
Sbjct: 1228 SWGKHVALGTGSSFQIIWDK--------KQMANDKDIGKGLYDFLVMVRTSGDQREANGA 1279
Query: 408 SL----CIGEDMDMDICLQ--------------------SLTNGSIFGN-KVGTDSFPRN 304
L + E+ D +CL S GSI N K+ S+ +
Sbjct: 1280 CLEDVDDLEEENDEALCLSPQFDDGFTNPTFEETFEGEVSFWKGSIHENGKINNSSWDKP 1339
Query: 303 KQSNFGRNKPAMDQDTSCWNQQQATNGDG-------------PDWNLPSSAADDVGW-NK 166
++ NF K A + W + DW+ + + W K
Sbjct: 1340 RECNFEFEKEAPPESWEKWKSTNTSRNASAWESGVRKENIVEEDWSCVTDSPSKNSWCKK 1399
Query: 165 PASNGDGA--AWNQPSSVTEGVAWSKPASNGDGAD-------WNQ---SNQPTSAIEDVG 22
ASN + WN ++ + W+ S G+ + W+ S+ + G
Sbjct: 1400 LASNTQESDDRWNANVTLKSNI-WNSQKSEGNQLENSANAKRWDDKKASDHANETWKSDG 1458
Query: 21 WG 16
WG
Sbjct: 1459 WG 1460
>OMP00131.1 RNA polymerase, alpha subunit [Corchorus capsularis]
Length = 1928
Score = 372 bits (956), Expect = e-107
Identities = 264/820 (32%), Positives = 408/820 (49%), Gaps = 18/820 (2%)
Frame = -1
Query: 2421 LKNDLSEISKLIRYMGVGSYQTNILSQVERGVKDLQNKIIREIPSDNSFIKMIDCTSSKS 2242
++ D+ IS L+ Y +Y + Q+E +++ + + I ++F +ID S +
Sbjct: 635 IEKDVQLISPLL-YQLRSTYNELVGLQIENHIREAKVPVANFIRKSSAFGDLIDSKSDSA 693
Query: 2241 TSRIVQQVGFLGIQFFH-GKNAIPSDWQKRLHTHLPCGESSFLQEYEVESPEVH-GFITS 2068
+++VQQ+GFLG Q F GK + K L + S V+ P G I S
Sbjct: 694 VTKVVQQIGFLGQQLFDKGKF-----YSKTLVDDVAYQFQSIYPSDLVDYPSAEFGLIKS 748
Query: 2067 SFISGLNPCETFIHSVHSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGN 1888
F GL+P E +HS+ +RE ++ GL EPG LFKNLMA LRDV +CYDGTVRN N
Sbjct: 749 CFFRGLDPYEEMVHSISTREVIVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNVNSN 808
Query: 1887 FLVQFQYGKFDDNGXXXXXXSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVS 1708
++QFQYG + + G+PVG+LAAT++++PAYKA D ST S S
Sbjct: 809 SIIQFQYG-----------LNARTKPQFPAGEPVGVLAATAMSNPAYKAVLD-STPSSNS 856
Query: 1707 PWEILEETLKGRDNGVLKHRDRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAG 1531
WE+++E L+ + + + DR+V+LY+K+C CG +K+ C E A
Sbjct: 857 SWELMKEILQCKVSFKNELIDRRVILYLKDCNCG------RKY---------CQENAAYV 901
Query: 1530 IQDALKKEILESFAVNIFVEYQERWFDAELRAPLLGHIQLDAKRLMGASLSPATLEGFLY 1351
+++ L+K L+ A + +EY+++ + E A L+GHI L+ + L ++S +
Sbjct: 902 VKNHLRKVTLKDAAKELVIEYKQQQAEPESEAGLVGHILLNKELLKELNVSMQEIHMKCQ 961
Query: 1350 DNL---RKKSHPLNSFLDNLRLQACDACDIAQRSGNDGFAKPCLHFALTKESYLASKGHS 1180
+ + RK ++F L + C I Q G PCL F +S
Sbjct: 962 ETITSSRKNKLTADTF-KRADLFFNECCSIQQSCGGKWLDMPCLMFVCR---------NS 1011
Query: 1179 HSFYSDLYLMVDVLYPRLAETTVKGDDRIEAVRISWNNQESKTWVASKKGTRNKXXXXXX 1000
S L + D++YP L ET +KGD RI + I W + ++ TW+ + ++++
Sbjct: 1012 QDLDSSLQDLSDIIYPALLETVIKGDPRICSANIIWVSPDTTTWI--RNPSKSQKGELAL 1069
Query: 999 XXXXXXXXVTQRGDAWEKALHSLLPFMELLDDSRCIPYSVHEVYKLLGVVAAYQLIIQRL 820
V Q GDAW + LP + L+D R IPY++ +V LLG+ A++ +QRL
Sbjct: 1070 DVVLEKSAVKQNGDAWRTVMDCCLPVLNLIDTQRSIPYAIKQVQDLLGISCAFEQAVQRL 1129
Query: 819 TLAVELLGKGSYKNHLLLIASCMTLTRKVIAYNAAGFKDLYNSMKYPVPFTEGTLKTPIK 640
+ +V ++ KG + HL+L+A+ MT +I +N+ G+K L S+ VPFTE TL TP K
Sbjct: 1130 STSVSMVAKGVLREHLILLANSMTCAGNLIGFNSGGYKALCRSLNIQVPFTEATLFTPRK 1189
Query: 639 SFERAAEEGVVDRLSGSVASCCWGKRAPVGTGSNFEIFWKDLE-GISKPLEEQCNELDAY 463
FERAAE+ VD LS VASC WGK VGTGS F++ W E G +Q + +D Y
Sbjct: 1190 CFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFDVLWDHKEVGF-----DQRSGIDVY 1244
Query: 462 ETLEVLGVDSEVEKVKPSSLCIGEDMDMDICLQSLTNGSIFGNKVGTDSFPRNKQSNFGR 283
LG+ S V+ ++ C+GE++D + L + SI + G
Sbjct: 1245 ---NFLGMLSGVKGPTSNTACLGEEVDDLMELDDMGEWSI------------SPDHGAGS 1289
Query: 282 NKPAMDQDTSCWNQQQATNGDGPDWNLPSSAADDVG------WNKPASNGDGAAWNQPSS 121
+KP + + N + + W+ +S+ ++VG WNK A +GD A +
Sbjct: 1290 DKPVFEDAANFENDLEDQPAES-TWDKVASSTENVGWDAFSAWNKNAEDGDKFA-EAGAG 1347
Query: 120 VTEGVAWSKPASNGDGADWNQSNQPT-SAIED----VGWG 16
T+ WS +W S T +ED GWG
Sbjct: 1348 TTKQTEWS---------NWGTSKSKTQDFVEDQTDSSGWG 1378
>XP_010238829.1 PREDICTED: DNA-directed RNA polymerase V subunit 1 [Brachypodium
distachyon] KQJ92654.1 hypothetical protein BRADI_4g45065
[Brachypodium distachyon]
Length = 1954
Score = 372 bits (955), Expect = e-107
Identities = 246/779 (31%), Positives = 395/779 (50%), Gaps = 19/779 (2%)
Frame = -1
Query: 2343 QVERGVKDLQNKIIREIPSDNSFIKMIDCTSSKSTSRIVQQVGFLGIQF-----FHGKNA 2179
+V+ +KD++ +I + + +ID S S S++VQQ+GF+G+Q F+
Sbjct: 661 RVDNNLKDVKQQISDFVVESSHLGLLIDPKSEPSMSKVVQQLGFVGLQLYREGKFYSSRL 720
Query: 2178 IPSDWQKRLHTHLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCETFIHSVHSREGLL 1999
+ + + H P + PE +G + +S+ GLNP E +HS+ +RE ++
Sbjct: 721 VEDCFSSFVDKHPPIVGNQ-------HPPEAYGLVQNSYFHGLNPYEELVHSISTREAIV 773
Query: 1998 SQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXSGH 1819
GL EPG LFKNLMA LRDV +CYDGTVRN C N ++Q +Y + D
Sbjct: 774 RSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNICSNSIMQLKYNEDDATDIPSAL---- 829
Query: 1818 FVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRDRK 1639
TPG+PVG+LAAT+I++PAYKA DAS + S W ++E L+ + + DRK
Sbjct: 830 -----TPGEPVGVLAATAISNPAYKAVLDASQSNNTS-WASMKEILQTKVSYKNDTNDRK 883
Query: 1638 VVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEYQER 1459
V+L++ +C KKF C EK A +Q+ LK+ LE A +I +EY ++
Sbjct: 884 VILFLNDCS-----CPKKF---------CKEKAAIAVQNRLKRVTLEDCATDICIEYHKQ 929
Query: 1458 WFD--AELRAPLLGHIQLDAKRLMGASLSPATL----EGFLYDNLRKKSHPLNSFLDNLR 1297
D +E L+GHI L+ RL ++S + + + +KK H L +
Sbjct: 930 ILDGSSEATPALVGHIHLEKARLDMINVSTEDILQKCQEVSLKHGKKKGH-LGHLFKKIT 988
Query: 1296 LQACDACDIAQRSGNDGFAK--PCLHFALTKESYLASKGHSHSFYSDLYLMVDVLYPRLA 1123
CD C Q+ DG PCL F+ +++ + S+ + + ++ + L L
Sbjct: 989 FSTCD-CSFTQKPMIDGKLPKVPCLQFSFSEDIPMLSESVERA----VSVLANSLCDVLL 1043
Query: 1122 ETTVKGDDRIEAVRISWNNQESKTWVASKKGTRN-KXXXXXXXXXXXXXXVTQRGDAWEK 946
+T +KGD RI+ +I W ++++WV K TR +++GDAW
Sbjct: 1044 DTIIKGDPRIQEAKIMWVGSDAQSWV---KNTRKVSKGEPTVEIVVEKNEASKQGDAWRI 1100
Query: 945 ALHSLLPFMELLDDSRCIPYSVHEVYKLLGVVAAYQLIIQRLTLAVELLGKGSYKNHLLL 766
A+ + +P ++L+D R IPY + +V +LLG+ ++ I+QRL+ ++ + KG K+HL+L
Sbjct: 1101 AMDACIPVIDLIDTRRSIPYGIQQVRELLGISCSFDQIVQRLSTTMKTVAKGILKDHLIL 1160
Query: 765 IASCMTLTRKVIAYNAAGFKDLYNSMKYPVPFTEGTLKTPIKSFERAAEEGVVDRLSGSV 586
+A+ MT T + +N G++ + ++K VPFTE TL TP+K FE+AAE+ D L V
Sbjct: 1161 VANSMTCTGNLYGFNTGGYRATFRALKVQVPFTESTLFTPMKCFEKAAEKCHSDALGCVV 1220
Query: 585 ASCCWGKRAPVGTGSNFEIFWKDLEGISKPLEEQCNELDAYETLEVLGVDSEVEK---VK 415
+SC WGK A +GTGS+F+I W E K +E + L Y+ L ++ D E + +
Sbjct: 1221 SSCSWGKHAALGTGSSFQILWN--ENQLKSNKEYGDGL--YDFLAMVRTDQEKARYTFLD 1276
Query: 414 PSSLCIGEDMDMDICLQSLTNGSIFGNKVGTDSFPRNKQSNFGRNKPAMDQDTSCWNQQQ 235
+ ++ DICL NG+ G D+F N G + + + W Q
Sbjct: 1277 DVDYLVEDNAMDDICLSPELNGT-HGVPTFEDNFEHQDTQN-GNSWENGTKANASWEQNA 1334
Query: 234 ATNGDGPDWN--LPSSAADDVGWNKPASNGDGAAWNQPSSVTEGVAWSKPASNGDGADW 64
+ D +W ++AA D G KPA G+ ++W+ P++ + D DW
Sbjct: 1335 SAGNDSDNWGGWSNAAAAADTGAAKPADQGN-SSWDVPAT-----------AENDSTDW 1381
>AQK60584.1 DNA-directed RNA polymerase V subunit 1, partial [Zea mays]
Length = 1436
Score = 368 bits (944), Expect = e-107
Identities = 255/788 (32%), Positives = 385/788 (48%), Gaps = 29/788 (3%)
Frame = -1
Query: 2343 QVERGVKDLQNKIIREIPSDNSFIKMIDCTSSKSTSRIVQQVGFLGIQFF-----HGKNA 2179
+VE +K+++ +I + + +ID S S++VQQVGF+G+Q + + +
Sbjct: 663 RVENNLKNVKQQISDSVGKFSDLGLLIDPKKEASMSKVVQQVGFVGLQLYREGKLYSRRL 722
Query: 2178 IPSDWQKRLHTHLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCETFIHSVHSREGLL 1999
+ + ++ HL G+ EY PE +G + SS+ GLNP E IH++ +RE ++
Sbjct: 723 VEDCFTNFVNKHLAIGD-----EYP---PEAYGLVQSSYFHGLNPYEELIHAISTREAMI 774
Query: 1998 SQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXSGH 1819
GL EPG LFKNLMA LRDV +CYDGTVRN C N ++Q +YG+ D+
Sbjct: 775 RSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQLKYGEDDETDSSSVVP--- 831
Query: 1818 FVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRDRK 1639
PG+PVG+LAAT+I++PAYKA D+S + S WE ++E L+ R + +DRK
Sbjct: 832 ------PGEPVGVLAATAISNPAYKAVLDSSQSNNAS-WESMKEILQTRTSYKNDVKDRK 884
Query: 1638 VVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEYQER 1459
VVL++ +C A KKF C E+ A +Q LK+ L A +I +E+Q++
Sbjct: 885 VVLFLNDCSCA-----KKF---------CKERAALAVQSCLKRVTLGDCATDICIEHQKQ 930
Query: 1458 WF---DAELRAPLLGHIQLDAKRLMGASLSPATLEGFLYD---NLRKKSHPLNSFLDNLR 1297
+E L+GHI LD L ++S + + KK L +
Sbjct: 931 INLDGTSEAAPTLVGHIHLDKGHLERINISTQDILQKCQEVSGRFGKKKGHLCHIFKKIT 990
Query: 1296 LQACDACDIAQRSGNDGFAK-PCLHFALTKESYLASKGHSHSFYSDLYLMVDVLYPRLAE 1120
CD C Q + K PC+ FA + + L S S + ++ D + L +
Sbjct: 991 FATCD-CSFTQMPIDGKLHKVPCVQFAFSDDIVL-----SESIERAVNVIADSVCSVLLD 1044
Query: 1119 TTVKGDDRIEAVRISWNNQESKTWVASKKGTRN-KXXXXXXXXXXXXXXVTQRGDAWEKA 943
T +KGD RI+A ++ W ++ +WV K TR GDAW A
Sbjct: 1045 TIIKGDPRIQAAKVIWVESDAASWV---KHTRKVSKGESALEIIVEKDDAVSNGDAWRTA 1101
Query: 942 LHSLLPFMELLDDSRCIPYSVHEVYKLLGVVAAYQLIIQRLTLAVELLGKGSYKNHLLLI 763
+ + LP + L+D R IPY + +V +L+G+ A+ ++QRL+ V+++ KG K+HL+L+
Sbjct: 1102 IDACLPVLNLIDTRRSIPYGIQQVRELIGISCAFDQVVQRLSTTVKMVNKGVLKDHLILV 1161
Query: 762 ASCMTLTRKVIAYNAAGFKDLYNSMKYPVPFTEGTLKTPIKSFERAAEEGVVDRLSGSVA 583
A+ MT T +I +N AG+K + S+K VPFTE TL TP+K FE+AAE+ D L V+
Sbjct: 1162 ANSMTCTGNLIGFNIAGYKATFRSLKVQVPFTESTLFTPMKCFEKAAEKCDSDSLGCVVS 1221
Query: 582 SCCWGKRAPVGTGSNFEIFWKDLEGISKPLEEQCNELDAYETLEVLGVDSEVEK---VKP 412
S WGK A VGTGS+F+I W E K +E + L Y+ L ++ D E +
Sbjct: 1222 SSAWGKHAAVGTGSSFQILWN--ENQLKSNKEYGDGL--YDFLALVRTDQEKTDYMFLDD 1277
Query: 411 SSLCIGEDMDMDICLQSLTNGSIFGNKVGTDSFPRNKQSNFGRNKPAMDQDTSCWNQQQA 232
+ E+ D+CL +G++ G D+F + G + S W Q +
Sbjct: 1278 VDYLVEENAADDMCLSPEPDGTL-GKPTFEDNF-EEQNIQKGSSWEIGITTNSSWEQNAS 1335
Query: 231 TNGDGPDWNLPSS--------AADDVGWNKPA-----SNGDGAAWNQPSSVTEGVAWSKP 91
D DW SS A D W A S D W+ E +P
Sbjct: 1336 VANDSGDWGGWSSGGGAAAKPADQDNSWEVHAKVQDNSTTDWGGWSVEKPTGEATVSGEP 1395
Query: 90 ASNGDGAD 67
A AD
Sbjct: 1396 AETDTWAD 1403
>AQK60579.1 DNA-directed RNA polymerase V subunit 1 [Zea mays]
Length = 1465
Score = 368 bits (944), Expect = e-107
Identities = 255/788 (32%), Positives = 385/788 (48%), Gaps = 29/788 (3%)
Frame = -1
Query: 2343 QVERGVKDLQNKIIREIPSDNSFIKMIDCTSSKSTSRIVQQVGFLGIQFF-----HGKNA 2179
+VE +K+++ +I + + +ID S S++VQQVGF+G+Q + + +
Sbjct: 663 RVENNLKNVKQQISDSVGKFSDLGLLIDPKKEASMSKVVQQVGFVGLQLYREGKLYSRRL 722
Query: 2178 IPSDWQKRLHTHLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCETFIHSVHSREGLL 1999
+ + ++ HL G+ EY PE +G + SS+ GLNP E IH++ +RE ++
Sbjct: 723 VEDCFTNFVNKHLAIGD-----EYP---PEAYGLVQSSYFHGLNPYEELIHAISTREAMI 774
Query: 1998 SQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXSGH 1819
GL EPG LFKNLMA LRDV +CYDGTVRN C N ++Q +YG+ D+
Sbjct: 775 RSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQLKYGEDDETDSSSVVP--- 831
Query: 1818 FVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRDRK 1639
PG+PVG+LAAT+I++PAYKA D+S + S WE ++E L+ R + +DRK
Sbjct: 832 ------PGEPVGVLAATAISNPAYKAVLDSSQSNNAS-WESMKEILQTRTSYKNDVKDRK 884
Query: 1638 VVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEYQER 1459
VVL++ +C A KKF C E+ A +Q LK+ L A +I +E+Q++
Sbjct: 885 VVLFLNDCSCA-----KKF---------CKERAALAVQSCLKRVTLGDCATDICIEHQKQ 930
Query: 1458 WF---DAELRAPLLGHIQLDAKRLMGASLSPATLEGFLYD---NLRKKSHPLNSFLDNLR 1297
+E L+GHI LD L ++S + + KK L +
Sbjct: 931 INLDGTSEAAPTLVGHIHLDKGHLERINISTQDILQKCQEVSGRFGKKKGHLCHIFKKIT 990
Query: 1296 LQACDACDIAQRSGNDGFAK-PCLHFALTKESYLASKGHSHSFYSDLYLMVDVLYPRLAE 1120
CD C Q + K PC+ FA + + L S S + ++ D + L +
Sbjct: 991 FATCD-CSFTQMPIDGKLHKVPCVQFAFSDDIVL-----SESIERAVNVIADSVCSVLLD 1044
Query: 1119 TTVKGDDRIEAVRISWNNQESKTWVASKKGTRN-KXXXXXXXXXXXXXXVTQRGDAWEKA 943
T +KGD RI+A ++ W ++ +WV K TR GDAW A
Sbjct: 1045 TIIKGDPRIQAAKVIWVESDAASWV---KHTRKVSKGESALEIIVEKDDAVSNGDAWRTA 1101
Query: 942 LHSLLPFMELLDDSRCIPYSVHEVYKLLGVVAAYQLIIQRLTLAVELLGKGSYKNHLLLI 763
+ + LP + L+D R IPY + +V +L+G+ A+ ++QRL+ V+++ KG K+HL+L+
Sbjct: 1102 IDACLPVLNLIDTRRSIPYGIQQVRELIGISCAFDQVVQRLSTTVKMVNKGVLKDHLILV 1161
Query: 762 ASCMTLTRKVIAYNAAGFKDLYNSMKYPVPFTEGTLKTPIKSFERAAEEGVVDRLSGSVA 583
A+ MT T +I +N AG+K + S+K VPFTE TL TP+K FE+AAE+ D L V+
Sbjct: 1162 ANSMTCTGNLIGFNIAGYKATFRSLKVQVPFTESTLFTPMKCFEKAAEKCDSDSLGCVVS 1221
Query: 582 SCCWGKRAPVGTGSNFEIFWKDLEGISKPLEEQCNELDAYETLEVLGVDSEVEK---VKP 412
S WGK A VGTGS+F+I W E K +E + L Y+ L ++ D E +
Sbjct: 1222 SSAWGKHAAVGTGSSFQILWN--ENQLKSNKEYGDGL--YDFLALVRTDQEKTDYMFLDD 1277
Query: 411 SSLCIGEDMDMDICLQSLTNGSIFGNKVGTDSFPRNKQSNFGRNKPAMDQDTSCWNQQQA 232
+ E+ D+CL +G++ G D+F + G + S W Q +
Sbjct: 1278 VDYLVEENAADDMCLSPEPDGTL-GKPTFEDNF-EEQNIQKGSSWEIGITTNSSWEQNAS 1335
Query: 231 TNGDGPDWNLPSS--------AADDVGWNKPA-----SNGDGAAWNQPSSVTEGVAWSKP 91
D DW SS A D W A S D W+ E +P
Sbjct: 1336 VANDSGDWGGWSSGGGAAAKPADQDNSWEVHAKVQDNSTTDWGGWSVEKPTGEATVSGEP 1395
Query: 90 ASNGDGAD 67
A AD
Sbjct: 1396 AETDTWAD 1403
>KJB67890.1 hypothetical protein B456_010G216600 [Gossypium raimondii]
Length = 1841
Score = 370 bits (950), Expect = e-106
Identities = 268/842 (31%), Positives = 411/842 (48%), Gaps = 41/842 (4%)
Frame = -1
Query: 2421 LKNDLSEISKLIRYMGVGSYQTNILSQVERGVKDLQNKIIREIPSDNSFIKMIDCTSSKS 2242
++ D+ IS L+ Y +Y + Q+E ++ + I I +S +ID S +
Sbjct: 625 IQKDIQVISPLL-YQLRSTYNELVELQMENHIRVAKEPIADFILKTSSLGNLIDSRSDSA 683
Query: 2241 TSRIVQQVGFLGIQFFH-GKNAIPSDWQKRLHTHLPCGESSFLQEYEVESPEVH-GFITS 2068
+++VQQ+GFLG+Q GK + K L + S ++ P G I S
Sbjct: 684 VNKVVQQIGFLGMQLSDKGKF-----YSKTLVEDVAHQFQSIYPSDAIDYPSAEFGLIKS 738
Query: 2067 SFISGLNPCETFIHSVHSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGN 1888
F GL+P E +HS+ +RE ++ GL EPG LFKNLMA LRDV +CYDGTVRN N
Sbjct: 739 CFFRGLDPYEGIVHSISTREVMVRSTRGLSEPGTLFKNLMAILRDVVICYDGTVRNVSSN 798
Query: 1887 FLVQFQYGKFDDNGXXXXXXSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVS 1708
++QFQYG S + G+PVG+LAAT++++PAYKA D+S + S
Sbjct: 799 SIIQFQYG-----------LSARTRPQFPAGEPVGVLAATAMSNPAYKAVLDSSPSSN-S 846
Query: 1707 PWEILEETLKGRDNGVLKHRDRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAG 1531
WE+++E L + + DR+V+LY+K+C CG +K+ C E A
Sbjct: 847 SWELMKEILLCKVSFKNDPIDRRVILYLKDCDCG------RKY---------CQENAAYL 891
Query: 1530 IQDALKKEILESFAVNIFVEYQERWFDAELRAPLLGHIQLDAKRLMGASLSPATLEGFLY 1351
+++ L++ L+ AV+ +EYQ++ +E+ A L+GHI L+ L S+S +
Sbjct: 892 VKNHLRRVKLKDIAVDFIIEYQQQQIVSEIEAGLVGHILLNKDLLKELSVSVQEIHMKCQ 951
Query: 1350 DNL---RKKSHPLNSFLDNLRLQACDACDIAQRSGNDGFAKPCLHFALTKESYLASKGHS 1180
+ + RKK +F L ++C I Q + PCL F +
Sbjct: 952 ETINSFRKKKKTAETF-KRTDLFVSESCSIQQSCVDKWLDMPCLMFFFRNTN-------D 1003
Query: 1179 HSFYSDLYLMVDVLYPRLAETTVKGDDRIEAVRISWNNQESKTWVASKKGTRNKXXXXXX 1000
+ S + ++ D++YP L +T +KGD RI + +I W N ++ TW+ + T+
Sbjct: 1004 DNLDSAIQILADIIYPVLLQTVIKGDPRICSAKIIWVNPDATTWIRNPSKTQK--GELAL 1061
Query: 999 XXXXXXXXVTQRGDAWEKALHSLLPFMELLDDSRCIPYSVHEVYKLLGVVAAYQLIIQRL 820
V Q GDAW + LP + ++D R IPY++ +V +LLG+ A++ +QRL
Sbjct: 1062 EVVLEKSAVKQNGDAWRTVIDCCLPVLNIIDTHRSIPYAIKQVEQLLGISCAFEQAVQRL 1121
Query: 819 TLAVELLGKGSYKNHLLLIASCMTLTRKVIAYNAAGFKDLYNSMKYPVPFTEGTLKTPIK 640
+ +V ++ +G K HL+L+A+ MT +I +N+ G+K L S+ VPFTE TL TP K
Sbjct: 1122 STSVSMVTRGVLKEHLMLLANSMTCCGNLIGFNSGGYKTLSRSLNIQVPFTEATLFTPRK 1181
Query: 639 SFERAAEEGVVDRLSGSVASCCWGKRAPVGTGSNFEIFWKDLEGISKPLEEQCNELDAYE 460
FERAAE+ D LS VASC WGKR VGTGS F++ W G +Q + +D Y
Sbjct: 1182 CFERAAEKCYDDSLSSIVASCSWGKRVAVGTGSRFDLLWNQESG-----SDQMSGMDVYN 1236
Query: 459 TLEVLGVDSEVEKVKPSSLCIGEDMD--MD-ICLQS----------LTNGSIFGNKVGTD 319
L ++ S ++ C+GE++D MD CL + + F N +
Sbjct: 1237 FLHMV---SGAGGSNSNTACLGEEVDDLMDEWCLSPDHSTGLDKPVFEDAAEFENNLDGQ 1293
Query: 318 SFPRNKQSNFGRNKPA-MDQDTSCWNQQ---------QATNGDGPD----WNLPSSAADD 181
S N + + +K + + D S WN+ AT+ + + W S + D
Sbjct: 1294 SASANWEKDVSLDKVSDVGWDASGWNKNAEDVDKFAAAATSSEKQNEWSGWGASKSNSQD 1353
Query: 180 V------GWNKPASNGD--GAAWNQPSSVTEGVAWSKPASNGDGADWNQSNQPTSAIEDV 25
V GWNK A +GD AA E W GA ++S S DV
Sbjct: 1354 VGWDALSGWNKNAEDGDKFAAAATSSKKQNECSDW--------GASKSKSQDVVSPKVDV 1405
Query: 24 GW 19
GW
Sbjct: 1406 GW 1407
>KJB67889.1 hypothetical protein B456_010G216600 [Gossypium raimondii]
Length = 1883
Score = 370 bits (950), Expect = e-106
Identities = 268/842 (31%), Positives = 411/842 (48%), Gaps = 41/842 (4%)
Frame = -1
Query: 2421 LKNDLSEISKLIRYMGVGSYQTNILSQVERGVKDLQNKIIREIPSDNSFIKMIDCTSSKS 2242
++ D+ IS L+ Y +Y + Q+E ++ + I I +S +ID S +
Sbjct: 634 IQKDIQVISPLL-YQLRSTYNELVELQMENHIRVAKEPIADFILKTSSLGNLIDSRSDSA 692
Query: 2241 TSRIVQQVGFLGIQFFH-GKNAIPSDWQKRLHTHLPCGESSFLQEYEVESPEVH-GFITS 2068
+++VQQ+GFLG+Q GK + K L + S ++ P G I S
Sbjct: 693 VNKVVQQIGFLGMQLSDKGKF-----YSKTLVEDVAHQFQSIYPSDAIDYPSAEFGLIKS 747
Query: 2067 SFISGLNPCETFIHSVHSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGN 1888
F GL+P E +HS+ +RE ++ GL EPG LFKNLMA LRDV +CYDGTVRN N
Sbjct: 748 CFFRGLDPYEGIVHSISTREVMVRSTRGLSEPGTLFKNLMAILRDVVICYDGTVRNVSSN 807
Query: 1887 FLVQFQYGKFDDNGXXXXXXSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVS 1708
++QFQYG S + G+PVG+LAAT++++PAYKA D+S + S
Sbjct: 808 SIIQFQYG-----------LSARTRPQFPAGEPVGVLAATAMSNPAYKAVLDSSPSSN-S 855
Query: 1707 PWEILEETLKGRDNGVLKHRDRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAG 1531
WE+++E L + + DR+V+LY+K+C CG +K+ C E A
Sbjct: 856 SWELMKEILLCKVSFKNDPIDRRVILYLKDCDCG------RKY---------CQENAAYL 900
Query: 1530 IQDALKKEILESFAVNIFVEYQERWFDAELRAPLLGHIQLDAKRLMGASLSPATLEGFLY 1351
+++ L++ L+ AV+ +EYQ++ +E+ A L+GHI L+ L S+S +
Sbjct: 901 VKNHLRRVKLKDIAVDFIIEYQQQQIVSEIEAGLVGHILLNKDLLKELSVSVQEIHMKCQ 960
Query: 1350 DNL---RKKSHPLNSFLDNLRLQACDACDIAQRSGNDGFAKPCLHFALTKESYLASKGHS 1180
+ + RKK +F L ++C I Q + PCL F +
Sbjct: 961 ETINSFRKKKKTAETF-KRTDLFVSESCSIQQSCVDKWLDMPCLMFFFRNTN-------D 1012
Query: 1179 HSFYSDLYLMVDVLYPRLAETTVKGDDRIEAVRISWNNQESKTWVASKKGTRNKXXXXXX 1000
+ S + ++ D++YP L +T +KGD RI + +I W N ++ TW+ + T+
Sbjct: 1013 DNLDSAIQILADIIYPVLLQTVIKGDPRICSAKIIWVNPDATTWIRNPSKTQK--GELAL 1070
Query: 999 XXXXXXXXVTQRGDAWEKALHSLLPFMELLDDSRCIPYSVHEVYKLLGVVAAYQLIIQRL 820
V Q GDAW + LP + ++D R IPY++ +V +LLG+ A++ +QRL
Sbjct: 1071 EVVLEKSAVKQNGDAWRTVIDCCLPVLNIIDTHRSIPYAIKQVEQLLGISCAFEQAVQRL 1130
Query: 819 TLAVELLGKGSYKNHLLLIASCMTLTRKVIAYNAAGFKDLYNSMKYPVPFTEGTLKTPIK 640
+ +V ++ +G K HL+L+A+ MT +I +N+ G+K L S+ VPFTE TL TP K
Sbjct: 1131 STSVSMVTRGVLKEHLMLLANSMTCCGNLIGFNSGGYKTLSRSLNIQVPFTEATLFTPRK 1190
Query: 639 SFERAAEEGVVDRLSGSVASCCWGKRAPVGTGSNFEIFWKDLEGISKPLEEQCNELDAYE 460
FERAAE+ D LS VASC WGKR VGTGS F++ W G +Q + +D Y
Sbjct: 1191 CFERAAEKCYDDSLSSIVASCSWGKRVAVGTGSRFDLLWNQESG-----SDQMSGMDVYN 1245
Query: 459 TLEVLGVDSEVEKVKPSSLCIGEDMD--MD-ICLQS----------LTNGSIFGNKVGTD 319
L ++ S ++ C+GE++D MD CL + + F N +
Sbjct: 1246 FLHMV---SGAGGSNSNTACLGEEVDDLMDEWCLSPDHSTGLDKPVFEDAAEFENNLDGQ 1302
Query: 318 SFPRNKQSNFGRNKPA-MDQDTSCWNQQ---------QATNGDGPD----WNLPSSAADD 181
S N + + +K + + D S WN+ AT+ + + W S + D
Sbjct: 1303 SASANWEKDVSLDKVSDVGWDASGWNKNAEDVDKFAAAATSSEKQNEWSGWGASKSNSQD 1362
Query: 180 V------GWNKPASNGD--GAAWNQPSSVTEGVAWSKPASNGDGADWNQSNQPTSAIEDV 25
V GWNK A +GD AA E W GA ++S S DV
Sbjct: 1363 VGWDALSGWNKNAEDGDKFAAAATSSKKQNECSDW--------GASKSKSQDVVSPKVDV 1414
Query: 24 GW 19
GW
Sbjct: 1415 GW 1416
>XP_012449583.1 PREDICTED: DNA-directed RNA polymerase V subunit 1 isoform X1
[Gossypium raimondii] KJB67887.1 hypothetical protein
B456_010G216600 [Gossypium raimondii]
Length = 1966
Score = 370 bits (950), Expect = e-106
Identities = 268/842 (31%), Positives = 411/842 (48%), Gaps = 41/842 (4%)
Frame = -1
Query: 2421 LKNDLSEISKLIRYMGVGSYQTNILSQVERGVKDLQNKIIREIPSDNSFIKMIDCTSSKS 2242
++ D+ IS L+ Y +Y + Q+E ++ + I I +S +ID S +
Sbjct: 634 IQKDIQVISPLL-YQLRSTYNELVELQMENHIRVAKEPIADFILKTSSLGNLIDSRSDSA 692
Query: 2241 TSRIVQQVGFLGIQFFH-GKNAIPSDWQKRLHTHLPCGESSFLQEYEVESPEVH-GFITS 2068
+++VQQ+GFLG+Q GK + K L + S ++ P G I S
Sbjct: 693 VNKVVQQIGFLGMQLSDKGKF-----YSKTLVEDVAHQFQSIYPSDAIDYPSAEFGLIKS 747
Query: 2067 SFISGLNPCETFIHSVHSREGLLSQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGN 1888
F GL+P E +HS+ +RE ++ GL EPG LFKNLMA LRDV +CYDGTVRN N
Sbjct: 748 CFFRGLDPYEGIVHSISTREVMVRSTRGLSEPGTLFKNLMAILRDVVICYDGTVRNVSSN 807
Query: 1887 FLVQFQYGKFDDNGXXXXXXSGHFVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVS 1708
++QFQYG S + G+PVG+LAAT++++PAYKA D+S + S
Sbjct: 808 SIIQFQYG-----------LSARTRPQFPAGEPVGVLAATAMSNPAYKAVLDSSPSSN-S 855
Query: 1707 PWEILEETLKGRDNGVLKHRDRKVVLYMKNC-CGAGIFTEKKFLGMEKHDVTCCEKIAAG 1531
WE+++E L + + DR+V+LY+K+C CG +K+ C E A
Sbjct: 856 SWELMKEILLCKVSFKNDPIDRRVILYLKDCDCG------RKY---------CQENAAYL 900
Query: 1530 IQDALKKEILESFAVNIFVEYQERWFDAELRAPLLGHIQLDAKRLMGASLSPATLEGFLY 1351
+++ L++ L+ AV+ +EYQ++ +E+ A L+GHI L+ L S+S +
Sbjct: 901 VKNHLRRVKLKDIAVDFIIEYQQQQIVSEIEAGLVGHILLNKDLLKELSVSVQEIHMKCQ 960
Query: 1350 DNL---RKKSHPLNSFLDNLRLQACDACDIAQRSGNDGFAKPCLHFALTKESYLASKGHS 1180
+ + RKK +F L ++C I Q + PCL F +
Sbjct: 961 ETINSFRKKKKTAETF-KRTDLFVSESCSIQQSCVDKWLDMPCLMFFFRNTN-------D 1012
Query: 1179 HSFYSDLYLMVDVLYPRLAETTVKGDDRIEAVRISWNNQESKTWVASKKGTRNKXXXXXX 1000
+ S + ++ D++YP L +T +KGD RI + +I W N ++ TW+ + T+
Sbjct: 1013 DNLDSAIQILADIIYPVLLQTVIKGDPRICSAKIIWVNPDATTWIRNPSKTQK--GELAL 1070
Query: 999 XXXXXXXXVTQRGDAWEKALHSLLPFMELLDDSRCIPYSVHEVYKLLGVVAAYQLIIQRL 820
V Q GDAW + LP + ++D R IPY++ +V +LLG+ A++ +QRL
Sbjct: 1071 EVVLEKSAVKQNGDAWRTVIDCCLPVLNIIDTHRSIPYAIKQVEQLLGISCAFEQAVQRL 1130
Query: 819 TLAVELLGKGSYKNHLLLIASCMTLTRKVIAYNAAGFKDLYNSMKYPVPFTEGTLKTPIK 640
+ +V ++ +G K HL+L+A+ MT +I +N+ G+K L S+ VPFTE TL TP K
Sbjct: 1131 STSVSMVTRGVLKEHLMLLANSMTCCGNLIGFNSGGYKTLSRSLNIQVPFTEATLFTPRK 1190
Query: 639 SFERAAEEGVVDRLSGSVASCCWGKRAPVGTGSNFEIFWKDLEGISKPLEEQCNELDAYE 460
FERAAE+ D LS VASC WGKR VGTGS F++ W G +Q + +D Y
Sbjct: 1191 CFERAAEKCYDDSLSSIVASCSWGKRVAVGTGSRFDLLWNQESG-----SDQMSGMDVYN 1245
Query: 459 TLEVLGVDSEVEKVKPSSLCIGEDMD--MD-ICLQS----------LTNGSIFGNKVGTD 319
L ++ S ++ C+GE++D MD CL + + F N +
Sbjct: 1246 FLHMV---SGAGGSNSNTACLGEEVDDLMDEWCLSPDHSTGLDKPVFEDAAEFENNLDGQ 1302
Query: 318 SFPRNKQSNFGRNKPA-MDQDTSCWNQQ---------QATNGDGPD----WNLPSSAADD 181
S N + + +K + + D S WN+ AT+ + + W S + D
Sbjct: 1303 SASANWEKDVSLDKVSDVGWDASGWNKNAEDVDKFAAAATSSEKQNEWSGWGASKSNSQD 1362
Query: 180 V------GWNKPASNGD--GAAWNQPSSVTEGVAWSKPASNGDGADWNQSNQPTSAIEDV 25
V GWNK A +GD AA E W GA ++S S DV
Sbjct: 1363 VGWDALSGWNKNAEDGDKFAAAATSSKKQNECSDW--------GASKSKSQDVVSPKVDV 1414
Query: 24 GW 19
GW
Sbjct: 1415 GW 1416
>AQK60587.1 DNA-directed RNA polymerase V subunit 1 [Zea mays]
Length = 1615
Score = 368 bits (944), Expect = e-106
Identities = 255/788 (32%), Positives = 385/788 (48%), Gaps = 29/788 (3%)
Frame = -1
Query: 2343 QVERGVKDLQNKIIREIPSDNSFIKMIDCTSSKSTSRIVQQVGFLGIQFF-----HGKNA 2179
+VE +K+++ +I + + +ID S S++VQQVGF+G+Q + + +
Sbjct: 346 RVENNLKNVKQQISDSVGKFSDLGLLIDPKKEASMSKVVQQVGFVGLQLYREGKLYSRRL 405
Query: 2178 IPSDWQKRLHTHLPCGESSFLQEYEVESPEVHGFITSSFISGLNPCETFIHSVHSREGLL 1999
+ + ++ HL G+ EY PE +G + SS+ GLNP E IH++ +RE ++
Sbjct: 406 VEDCFTNFVNKHLAIGD-----EYP---PEAYGLVQSSYFHGLNPYEELIHAISTREAMI 457
Query: 1998 SQKMGLKEPGVLFKNLMAFLRDVTVCYDGTVRNACGNFLVQFQYGKFDDNGXXXXXXSGH 1819
GL EPG LFKNLMA LRDV +CYDGTVRN C N ++Q +YG+ D+
Sbjct: 458 RSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQLKYGEDDETDSSSVVP--- 514
Query: 1818 FVEKSTPGDPVGILAATSIASPAYKAFSDASTQKSVSPWEILEETLKGRDNGVLKHRDRK 1639
PG+PVG+LAAT+I++PAYKA D+S + S WE ++E L+ R + +DRK
Sbjct: 515 ------PGEPVGVLAATAISNPAYKAVLDSSQSNNAS-WESMKEILQTRTSYKNDVKDRK 567
Query: 1638 VVLYMKNCCGAGIFTEKKFLGMEKHDVTCCEKIAAGIQDALKKEILESFAVNIFVEYQER 1459
VVL++ +C A KKF C E+ A +Q LK+ L A +I +E+Q++
Sbjct: 568 VVLFLNDCSCA-----KKF---------CKERAALAVQSCLKRVTLGDCATDICIEHQKQ 613
Query: 1458 WF---DAELRAPLLGHIQLDAKRLMGASLSPATLEGFLYD---NLRKKSHPLNSFLDNLR 1297
+E L+GHI LD L ++S + + KK L +
Sbjct: 614 INLDGTSEAAPTLVGHIHLDKGHLERINISTQDILQKCQEVSGRFGKKKGHLCHIFKKIT 673
Query: 1296 LQACDACDIAQRSGNDGFAK-PCLHFALTKESYLASKGHSHSFYSDLYLMVDVLYPRLAE 1120
CD C Q + K PC+ FA + + L S S + ++ D + L +
Sbjct: 674 FATCD-CSFTQMPIDGKLHKVPCVQFAFSDDIVL-----SESIERAVNVIADSVCSVLLD 727
Query: 1119 TTVKGDDRIEAVRISWNNQESKTWVASKKGTRN-KXXXXXXXXXXXXXXVTQRGDAWEKA 943
T +KGD RI+A ++ W ++ +WV K TR GDAW A
Sbjct: 728 TIIKGDPRIQAAKVIWVESDAASWV---KHTRKVSKGESALEIIVEKDDAVSNGDAWRTA 784
Query: 942 LHSLLPFMELLDDSRCIPYSVHEVYKLLGVVAAYQLIIQRLTLAVELLGKGSYKNHLLLI 763
+ + LP + L+D R IPY + +V +L+G+ A+ ++QRL+ V+++ KG K+HL+L+
Sbjct: 785 IDACLPVLNLIDTRRSIPYGIQQVRELIGISCAFDQVVQRLSTTVKMVNKGVLKDHLILV 844
Query: 762 ASCMTLTRKVIAYNAAGFKDLYNSMKYPVPFTEGTLKTPIKSFERAAEEGVVDRLSGSVA 583
A+ MT T +I +N AG+K + S+K VPFTE TL TP+K FE+AAE+ D L V+
Sbjct: 845 ANSMTCTGNLIGFNIAGYKATFRSLKVQVPFTESTLFTPMKCFEKAAEKCDSDSLGCVVS 904
Query: 582 SCCWGKRAPVGTGSNFEIFWKDLEGISKPLEEQCNELDAYETLEVLGVDSEVEK---VKP 412
S WGK A VGTGS+F+I W E K +E + L Y+ L ++ D E +
Sbjct: 905 SSAWGKHAAVGTGSSFQILWN--ENQLKSNKEYGDGL--YDFLALVRTDQEKTDYMFLDD 960
Query: 411 SSLCIGEDMDMDICLQSLTNGSIFGNKVGTDSFPRNKQSNFGRNKPAMDQDTSCWNQQQA 232
+ E+ D+CL +G++ G D+F + G + S W Q +
Sbjct: 961 VDYLVEENAADDMCLSPEPDGTL-GKPTFEDNF-EEQNIQKGSSWEIGITTNSSWEQNAS 1018
Query: 231 TNGDGPDWNLPSS--------AADDVGWNKPA-----SNGDGAAWNQPSSVTEGVAWSKP 91
D DW SS A D W A S D W+ E +P
Sbjct: 1019 VANDSGDWGGWSSGGGAAAKPADQDNSWEVHAKVQDNSTTDWGGWSVEKPTGEATVSGEP 1078
Query: 90 ASNGDGAD 67
A AD
Sbjct: 1079 AETDTWAD 1086