BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra29_contig00006207
         (2223 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

OAE26586.1 hypothetical protein AXG93_4542s1070 [Marchantia poly...   660   0.0  
CBI29879.3 unnamed protein product, partial [Vitis vinifera]          647   0.0  
XP_010653802.1 PREDICTED: DNA-directed RNA polymerase I subunit ...   645   0.0  
XP_020114580.1 DNA-directed RNA polymerase I subunit 1 [Ananas c...   643   0.0  
AIO05696.1 putative RNA polymerase AI large subunit, partial [Co...   637   0.0  
XP_008798769.1 PREDICTED: DNA-directed RNA polymerase I subunit ...   627   0.0  
XP_002440173.1 hypothetical protein SORBIDRAFT_09g027223, partia...   596   0.0  
KHG00372.1 DNA-directed RNA polymerase I subunit rpa[2] [Gossypi...   592   0.0  
XP_016497258.1 PREDICTED: DNA-directed RNA polymerase I subunit ...   593   0.0  
XP_009394527.1 PREDICTED: DNA-directed RNA polymerase I subunit ...   611   0.0  
ACN85329.1 putative RNA polymerase A(I) large subunit, partial [...   595   0.0  
JAU73211.1 DNA-directed RNA polymerase I subunit rpa1 [Noccaea c...   607   0.0  
JAU46626.1 DNA-directed RNA polymerase I subunit rpa1 [Noccaea c...   606   0.0  
XP_015866147.1 PREDICTED: DNA-directed RNA polymerase I subunit ...   609   0.0  
XP_010666878.1 PREDICTED: DNA-directed RNA polymerase I subunit ...   607   0.0  
KFK35011.1 hypothetical protein AALP_AA5G222600 [Arabis alpina]       606   0.0  
EOY09355.1 Nuclear RNA polymerase A1, putative isoform 1 [Theobr...   605   0.0  
JAV01220.1 DNA-directed RNA polymerase I subunit rpa1 [Noccaea c...   605   0.0  
XP_006588921.1 PREDICTED: DNA-directed RNA polymerase I subunit ...   605   0.0  
EOY09356.1 Nuclear RNA polymerase A1, putative isoform 2 [Theobr...   605   0.0  

>OAE26586.1 hypothetical protein AXG93_4542s1070 [Marchantia polymorpha subsp.
            polymorpha]
          Length = 1698

 Score =  660 bits (1702), Expect = 0.0
 Identities = 344/716 (48%), Positives = 458/716 (63%), Gaps = 60/716 (8%)
 Frame = -3

Query: 2044 QVLTKEIGAVHFTFYSDEEVRTTSVKSITSPILFDNLNRPAPEGLYDAALGPIDNHTSCV 1865
            +V+ K I AV F+FY+DEE+   SVK ITSP+LFDNL    P GLYD ALGP+D  +SC+
Sbjct: 3    EVVCKAIDAVEFSFYNDEEIHAISVKHITSPVLFDNLRNAVPGGLYDGALGPLDKFSSCI 62

Query: 1864 TCGESFLNCPGHCGHIELAMTVYNPLVFRHLLKFMNQMCTHCHHFKLTAEKLNDYADKLD 1685
            TCG+  +NCPGHCGHI L + VYNPLV++++LK    +C +CH+FK+   ++  ++DKL+
Sbjct: 63   TCGQQPINCPGHCGHINLMLPVYNPLVYKNVLKIYRSVCIYCHNFKMHKNRVTLFSDKLE 122

Query: 1684 EIRKNNSVD-------------------------------------SKFKSSSNEEQYS- 1619
             I +   V+                                     S ++  + +E  + 
Sbjct: 123  LISQGRMVEAMNVVVKKVENEGDNMEEIIQGGSFSTGLDEEMGEDGSSYRGETGDEDVAA 182

Query: 1618 ----WTSFQLSEAREILSSMISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVN 1451
                +T+ Q+   +E++S  +S +     KC NC  + P + +   G+L    L K  + 
Sbjct: 183  GKRHFTASQIDATKEVISQFMSSMP--PRKCENCLAHVPAIRNEGVGKLFQLPLPKGSLA 240

Query: 1450 ANILKGLKS--------HRGTRRKDHSSEISANQTMGDNVTDLXXXXXXXXXXXXSLNGA 1295
            +NI++GLKS            R KD   E+  N    + + ++                 
Sbjct: 241  SNIMRGLKSVINIASGNDDTERAKDEDVEMEENDISENAIEEID---------------- 284

Query: 1294 DMMVKNLMEKTESKFVKD--RLLTPIEIKDHLRLLWENETRICCLMWDIQQEKKI---SW 1130
            +  +   M +T+   V++  + LTP E+K+HLRL WENE RIC L+W  Q+   +   S 
Sbjct: 285  EKKIDRKMRETDQADVRNQTKFLTPSEVKEHLRLTWENEERICSLIWGAQEAYGLLTKSK 344

Query: 1129 KQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVLEHPQNILYSKVLQANIAVVEALKSGKNQ 950
            K     +MFFLQ +LV P+RFRPPN++   +LEHPQNI YS+V+QANI++ E+ +  K  
Sbjct: 345  KDVCGSDMFFLQTILVTPNRFRPPNRMDDQILEHPQNIFYSRVIQANISLTESSRGAKGD 404

Query: 949  GYVFQVTNRWLNLQDAVNVVIDSNTANTMKGK-DVTGVRQLLEKKEGLFRQNMMGKRVNY 773
                + T  WLNLQ+AVN ++DS TA   K      GVRQLLEKKEGLFR NMMGKRVN+
Sbjct: 405  LNFSKATALWLNLQNAVNALLDSTTAIGSKADAGGNGVRQLLEKKEGLFRMNMMGKRVNF 464

Query: 772  ACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNEEKLRQAIRNGPHVYPGATHFED 593
            ACRSVISPDPY+AVNEIGIPPYFA RLTYPE+VTPWN ++LR A+ NGP  +PGATH ED
Sbjct: 465  ACRSVISPDPYIAVNEIGIPPYFATRLTYPERVTPWNVQQLRDAVENGPSTHPGATHVED 524

Query: 592  EQG-MVDLSKILPHQRNSIAKKLLSTRGVASSGTSVENIDSNKVE---GKVVYRHLQDGD 425
            E G + +L+ +  ++R +IAK LLS  G++ +  S     S+ V    GK VYRHL+ GD
Sbjct: 525  EDGKLTNLASLPSYKRAAIAKTLLSASGLSGANVSRGADASSDVPRSGGKTVYRHLRSGD 584

Query: 424  VLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYANCSAYNADFDGDEMNVHFPQDEISRA 245
            +LLVNRQPTLHKP +MAH ARVLKGEKTLRMHYANCS YNADFDGDEMNVHFPQDE+ R+
Sbjct: 585  ILLVNRQPTLHKPGVMAHKARVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDELGRS 644

Query: 244  EAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLLTKRDTFLSKEEYQNLVYSACI 77
            E Y+IVNA++Q+ VPTSGDPIRGLIQDH+V A LLTKRDTFL++EEY  +VY+A +
Sbjct: 645  EGYNIVNADEQFVVPTSGDPIRGLIQDHVVGAVLLTKRDTFLTREEYMQIVYAAVV 700


>CBI29879.3 unnamed protein product, partial [Vitis vinifera]
          Length = 1669

 Score =  647 bits (1668), Expect = 0.0
 Identities = 347/688 (50%), Positives = 446/688 (64%), Gaps = 37/688 (5%)
 Frame = -3

Query: 2035 TKEIGAVHFTFYSDEEVRTTSVKSITSPILFDNLNRPAPEGLYDAALGPIDNHTSCVTCG 1856
            T+ + AV F+F++DEEVR  S K ITSP++ D++ RP P GLYD ALG ID +T C +CG
Sbjct: 9    TEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDENTPCQSCG 68

Query: 1855 ESFLNCPGHCGHIELAMTVYNPLVFRHLLKFMNQMCTHCHHFKLTAEKLNDYADKLDEIR 1676
            +    CPGHCGHI+L  +VYNPL+F  L   + + C  CHHFK ++  +  Y  +L+ I 
Sbjct: 69   QRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQLELIS 128

Query: 1675 KNNSVDSK--------------------------FKSSSNE------EQYSWTSFQLSEA 1592
            K + V +K                            SS+ +      +Q  WTS Q  EA
Sbjct: 129  KGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTSLQCIEA 188

Query: 1591 REILSSMISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVNANILKGLKSHR-- 1418
              ++ +    LKL+   C NC   +P+VT P FG  HM+ LS  +  AN+++G K  R  
Sbjct: 189  MSVMDNF---LKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSKLERPL 245

Query: 1417 -GTRRKDHSSEISANQTMGDNVTDLXXXXXXXXXXXXSLNGADMMVKNLMEKTESKFVKD 1241
             G    +  S I+    + D VT                 GA   ++ + +K+   F   
Sbjct: 246  NGVDTDETHSSIAPTDGIQDTVTKRLER-----------KGAQAPIEFIKQKS---FFSG 291

Query: 1240 RLLTPIEIKDHLRLLWENETRICCLMWDIQQEKKISWKQAPSYEMFFLQVLLVPPSRFRP 1061
             LL P E++D +  LWENE  +C  + DI QE+  +      Y MFFL+ +LVPP +FRP
Sbjct: 292  PLL-PSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRP 350

Query: 1060 PNKVGTSVLEHPQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDS 881
            P+K   SV+EHPQ +L  KVLQANIA+  A  +   +    ++ +RW++LQ ++NV+ D 
Sbjct: 351  PSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERS---KIISRWMDLQQSINVLFDG 407

Query: 880  NTANTMKGKDV-TGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYF 704
             TA     +D  +G+ QLLEKKEG+FRQ MMGKRVN+ACRSVISPDPYLAVNEIGIPPYF
Sbjct: 408  KTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYF 467

Query: 703  ALRLTYPEKVTPWNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQRNSIAKKLL 524
            ALRLTYPEKVTPWN  KLR AI NGP ++PGATH+ D+   V L+ +    R SI++KL 
Sbjct: 468  ALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLA-VNKKMRISISRKLP 526

Query: 523  STRGV-ASSGTSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGE 347
            S+RGV A  G S +N    + EGK+VYRHLQDGD++LVNRQPTLHKPS+MAH+ RVLKGE
Sbjct: 527  SSRGVVAQPGRSSDN----EFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGE 582

Query: 346  KTLRMHYANCSAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQ 167
            KTLRMHYANCS YNADFDGDEMNVHFPQDEISRAEAY+IVNAN QY VP+ GDPIRGLIQ
Sbjct: 583  KTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQ 642

Query: 166  DHIVSATLLTKRDTFLSKEEYQNLVYSA 83
            DHIVSA LLTK+DTFL++E+Y  L+YS+
Sbjct: 643  DHIVSAVLLTKKDTFLTREQYNQLLYSS 670


>XP_010653802.1 PREDICTED: DNA-directed RNA polymerase I subunit 1 [Vitis vinifera]
          Length = 1691

 Score =  645 bits (1664), Expect = 0.0
 Identities = 349/699 (49%), Positives = 451/699 (64%), Gaps = 48/699 (6%)
 Frame = -3

Query: 2035 TKEIGAVHFTFYSDEEVRTTSVKSITSPILFDNLNRPAPEGLYDAALGPIDNHTSCVTCG 1856
            T+ + AV F+F++DEEVR  S K ITSP++ D++ RP P GLYD ALG ID +T C +CG
Sbjct: 9    TEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDENTPCQSCG 68

Query: 1855 ESFLNCPGHCGHIELAMTVYNPLVFRHLLKFMNQMCTHCHHFKLTAEKLNDYADKLDEIR 1676
            +    CPGHCGHI+L  +VYNPL+F  L   + + C  CHHFK ++  +  Y  +L+ I 
Sbjct: 69   QRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQLELIS 128

Query: 1675 KNNSVDSK--------------------------FKSSSNE------EQYSWTSFQLSEA 1592
            K + V +K                            SS+ +      +Q  WTS Q  EA
Sbjct: 129  KGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTSLQCIEA 188

Query: 1591 REILSSMISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVNANILKGLKSHRGT 1412
              ++ +    LKL+   C NC   +P+VT P FG  HM+ LS  +  AN+++G K  R  
Sbjct: 189  MSVMDNF---LKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSKLERPL 245

Query: 1411 RRKDHSSEISANQTMGDNVTDLXXXXXXXXXXXXSLNGA------DMMVKNLMEKTES-- 1256
             R   + E S+++   +NV D+              + A      D + K L  K     
Sbjct: 246  SRV--AEEKSSSEV--ENVNDMFPWGDGVDTDETHSSIAPTDGIQDTVTKRLERKGAQAP 301

Query: 1255 -KFVKDRL-----LTPIEIKDHLRLLWENETRICCLMWDIQQEKKISWKQAPSYEMFFLQ 1094
             +F+K +      L P E++D +  LWENE  +C  + DI QE+  +      Y MFFL+
Sbjct: 302  IEFIKQKSFFSGPLLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLE 361

Query: 1093 VLLVPPSRFRPPNKVGTSVLEHPQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLN 914
             +LVPP +FRPP+K   SV+EHPQ +L  KVLQANIA+  A  +   +    ++ +RW++
Sbjct: 362  TILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERS---KIISRWMD 418

Query: 913  LQDAVNVVIDSNTANTMKGKDV-TGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYL 737
            LQ ++NV+ D  TA     +D  +G+ QLLEKKEG+FRQ MMGKRVN+ACRSVISPDPYL
Sbjct: 419  LQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYL 478

Query: 736  AVNEIGIPPYFALRLTYPEKVTPWNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILP 557
            AVNEIGIPPYFALRLTYPEKVTPWN  KLR AI NGP ++PGATH+ D+   V L+ +  
Sbjct: 479  AVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLA-VNK 537

Query: 556  HQRNSIAKKLLSTRGV-ASSGTSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSM 380
              R SI++KL S+RGV A  G S +N    + EGK+VYRHLQDGD++LVNRQPTLHKPS+
Sbjct: 538  KMRISISRKLPSSRGVVAQPGRSSDN----EFEGKIVYRHLQDGDIVLVNRQPTLHKPSI 593

Query: 379  MAHIARVLKGEKTLRMHYANCSAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVP 200
            MAH+ RVLKGEKTLRMHYANCS YNADFDGDEMNVHFPQDEISRAEAY+IVNAN QY VP
Sbjct: 594  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVP 653

Query: 199  TSGDPIRGLIQDHIVSATLLTKRDTFLSKEEYQNLVYSA 83
            + GDPIRGLIQDHIVSA LLTK+DTFL++E+Y  L+YS+
Sbjct: 654  SRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSS 692


>XP_020114580.1 DNA-directed RNA polymerase I subunit 1 [Ananas comosus]
            XP_020114581.1 DNA-directed RNA polymerase I subunit 1
            [Ananas comosus]
          Length = 1633

 Score =  643 bits (1658), Expect = 0.0
 Identities = 346/683 (50%), Positives = 448/683 (65%), Gaps = 27/683 (3%)
 Frame = -3

Query: 2044 QVLTKEIGAVHFTFYSDEEVRTTSVKSITSPILFDNLNRPAPEGLYDAALGPIDNHTSCV 1865
            +  ++ + +VHF+FY++EE+R  SVK IT P L D  N P  +GLYD ALGPI++  SC 
Sbjct: 8    EAASETVESVHFSFYNEEEIRKISVKRITKPDLLDTKNVPVSDGLYDPALGPINDTDSCK 67

Query: 1864 TCGESFLNCPGHCGHIELAMTVYNPLVFRHLLKFMNQMCTHCHHFKLTAEKLNDYADKLD 1685
            TCG+  + CPGHCGHI+LA  +YNPL+F+ L   +   C  CH+FKL  EK+  Y  +L 
Sbjct: 68   TCGQLSVRCPGHCGHIDLARPIYNPLLFKSLQTLLQITCFSCHNFKLDHEKVRRYTSQLK 127

Query: 1684 EIRKN----------------NSVDSKFKSS---------SNEEQYSWTSFQLSEAREIL 1580
             I +                 NS +++  SS         SN +Q +WTS Q +EA  +L
Sbjct: 128  LILEGDIIGARNLEAASWNQLNSSENETVSSADCTGESFSSNPKQRTWTSLQYTEALSVL 187

Query: 1579 SSMISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVNANILKGLKSHRGTRRKD 1400
            S ++ E   ++ KC NC    P +TSP FG L+    S  +V ANI+             
Sbjct: 188  SKLMRE---KRKKCNNCEAKNPTITSPTFGWLNKIVRSS-DVRANIIA------------ 231

Query: 1399 HSSEISANQTMGDNVTDLXXXXXXXXXXXXSLNGADMMVKNLMEKTESKFVKDRLLTPIE 1220
              SEI  + T+  N  D             +    D + K ++   +        L P+E
Sbjct: 232  -RSEIEQSSTVEQN--DEADTIATKKAKRQTRRLPDELAKQMLSSGQKH------LFPVE 282

Query: 1219 IKDHLRLLWENETRICCLMWDIQQEKKISWKQAPSYEMFFLQVLLVPPSRFRPPNKVGT- 1043
             ++ L  LW+NE R+C L+ DIQQ+     ++   Y+MFFL+ LLVPPS+FRPP    T 
Sbjct: 283  AENVLEALWKNEARLCMLICDIQQKSLTVCRREKGYQMFFLRALLVPPSKFRPPAGSSTR 342

Query: 1042 SVLEHPQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTM 863
             VLEHPQN+L SKV ++NIA+   +    N      V+ RW++LQ +VNV+ DS+  +  
Sbjct: 343  GVLEHPQNVLLSKVQESNIALRNLIALDPNHP---DVSKRWMDLQRSVNVLFDSSKGSVK 399

Query: 862  KGKDVTGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYP 683
              K+ +G+RQLLEKK+G+ RQ MMGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRLTYP
Sbjct: 400  SEKETSGIRQLLEKKQGILRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYP 459

Query: 682  EKVTPWNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQRNSIAKKLLSTRG-VA 506
            E+VTPWN  KLR AI NG  ++PGATH++D++ M  L ++ P++R +I+KKLL++RG V 
Sbjct: 460  ERVTPWNANKLRHAIINGADIHPGATHYKDKESMYKL-QVGPNKRYAISKKLLTSRGAVG 518

Query: 505  SSGTSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHY 326
              G   E+    + EGKVVYRHLQDGD++LVNRQPTLHKPSMMAH  RVLKGEKTLRMHY
Sbjct: 519  QQGKGPES----EFEGKVVYRHLQDGDIVLVNRQPTLHKPSMMAHFVRVLKGEKTLRMHY 574

Query: 325  ANCSAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSAT 146
            ANCS YNADFDGDEMNVH PQDEISRAEA +IVNANKQY VPTSG+PIRGLIQDHIVSA 
Sbjct: 575  ANCSTYNADFDGDEMNVHLPQDEISRAEAINIVNANKQYIVPTSGNPIRGLIQDHIVSAV 634

Query: 145  LLTKRDTFLSKEEYQNLVYSACI 77
            LLTK DTFL++EEY  L+Y++C+
Sbjct: 635  LLTKLDTFLTREEYHQLLYASCV 657


>AIO05696.1 putative RNA polymerase AI large subunit, partial [Cocos nucifera]
          Length = 1669

 Score =  637 bits (1644), Expect = 0.0
 Identities = 350/702 (49%), Positives = 451/702 (64%), Gaps = 38/702 (5%)
 Frame = -3

Query: 2074 ANMTSSNARSQVLTKEIGAVHFTFYSDEEVRTTSVKSITSPILFDNLNRPAPEGLYDAAL 1895
            A++ S  A S+V    + +VHF FY+ EE+R  SVK IT P L D+ N P P+GLYD A+
Sbjct: 2    ADVRSEEAASEV----VDSVHFHFYTAEEIRKISVKKITKPGLLDSKNAPVPDGLYDPAM 57

Query: 1894 GPIDNHTSCVTCGESFLNCPGHCGHIELAMTVYNPLVFRHLLKFMNQMCTHCHHFKLTAE 1715
            GPI++  SC +CG+    CPGHCGHI+LA  +YNPL+FR+L   +   C  CH F+L  E
Sbjct: 58   GPINDTDSCKSCGQLSFRCPGHCGHIDLAKQLYNPLLFRNLQNLLQITCFFCHRFRLNEE 117

Query: 1714 KLNDYADKLDEIRKNNSV--------------------------DSKFKSSSNEEQYSWT 1613
            K+  YA +LD I K + V                          +S  K ++ ++Q +WT
Sbjct: 118  KVQRYAKQLDLIAKGDIVGARTLEARSWGFPEGEETKSAVISTNESLLKITNLKQQQTWT 177

Query: 1612 SFQLSEAREILSSMISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVNANILKG 1433
            S Q SEA  I+S  + E   +  KCANCG   P +TSP FG L+ + +   ++  N + G
Sbjct: 178  SLQYSEALSIMSKFLRE---KSKKCANCGRKNPTITSPTFGWLNKA-MQASDIRTNFIIG 233

Query: 1432 LKSHRGTRRKDHSSEISANQTMGDNV--TDLXXXXXXXXXXXXSLNGADMM-VKNLMEKT 1262
                  +  +D ++E  A+Q+ GD+   TD                  D+   K      
Sbjct: 234  YDLGLSST-EDQNAE--ASQSRGDSASQTDEEPSSIAKVERKTKKQSRDLQKTKKQSMDL 290

Query: 1261 ESKFVKDRL-------LTPIEIKDHLRLLWENETRICCLMWDIQQEKKISWKQAPSYEMF 1103
              +  K  L       L P E++  L+ LW+N+ +IC LM D+Q     +  +   Y MF
Sbjct: 291  PPEIAKQMLSSGQKKHLLPSEVEAILKDLWKNQAKICALMCDLQHRSLNASGRDKGYAMF 350

Query: 1102 FLQVLLVPPSRFRPPNKVGT-SVLEHPQNILYSKVLQANIAVVEALKSGKNQGYVFQVTN 926
            FL+ LLVPPS+FRPP   GT  VLEHPQN+L SKV ++NIA+   + +G +      +  
Sbjct: 351  FLKTLLVPPSKFRPPAGSGTRGVLEHPQNVLLSKVQESNIALRNVIANGPDHP---DIVR 407

Query: 925  RWLNLQDAVNVVIDSNTANTMKGKDVTGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPD 746
            RW++LQ  VNV+ DS        ++V G+RQLLEKK G+ RQ MMGKRVN+ACRSVISPD
Sbjct: 408  RWMDLQRNVNVLFDSTKGWVKTEREVNGIRQLLEKKAGILRQKMMGKRVNFACRSVISPD 467

Query: 745  PYLAVNEIGIPPYFALRLTYPEKVTPWNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSK 566
            PYLAVNEIGIPPYFALRLTYPE+VTPWN  KLR AI NG  ++PGATH++D++ M  L +
Sbjct: 468  PYLAVNEIGIPPYFALRLTYPERVTPWNVNKLRYAIINGADIHPGATHYKDKERMYKL-Q 526

Query: 565  ILPHQRNSIAKKLLSTRGV-ASSGTSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHK 389
            +  + RN+I++KL ++RGV    G   E+    + EGKVVYRHLQDGD++LVNRQPTLHK
Sbjct: 527  LGRNMRNAISRKLPTSRGVLVQQGKGPES----EFEGKVVYRHLQDGDIVLVNRQPTLHK 582

Query: 388  PSMMAHIARVLKGEKTLRMHYANCSAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQY 209
            PSMMAH+ RVLKGEKTLRMHYANCS YNADFDGDEMNVH PQDEISRAEA +IVNANKQY
Sbjct: 583  PSMMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHLPQDEISRAEAINIVNANKQY 642

Query: 208  TVPTSGDPIRGLIQDHIVSATLLTKRDTFLSKEEYQNLVYSA 83
             VPTSGDPIRGLIQDHIVSA LLTK DTFL++EEY  L+Y++
Sbjct: 643  IVPTSGDPIRGLIQDHIVSAVLLTKLDTFLTREEYHQLLYAS 684


>XP_008798769.1 PREDICTED: DNA-directed RNA polymerase I subunit 1 [Phoenix
            dactylifera]
          Length = 1665

 Score =  627 bits (1617), Expect = 0.0
 Identities = 342/698 (48%), Positives = 448/698 (64%), Gaps = 32/698 (4%)
 Frame = -3

Query: 2074 ANMTSSNARSQVLTKEIGAVHFTFYSDEEVRTTSVKSITSPILFDNLNRPAPEGLYDAAL 1895
            A   S  A S+V    + +V F+FY+ EE+R  SVK IT P L D+ N   P+GLYD AL
Sbjct: 2    AQTRSEEAASEV----VDSVRFSFYTAEEIRKISVKKITKPDLLDSKNASVPDGLYDPAL 57

Query: 1894 GPIDNHTSCVTCGESFLNCPGHCGHIELAMTVYNPLVFRHLLKFMNQMCTHCHHFKLTAE 1715
            GPI++  SC +CG+    CPGHCGHI+LA  +YNPL+FR+L   +   C  C  F+L  E
Sbjct: 58   GPINDTDSCKSCGQLSFRCPGHCGHIDLARPLYNPLLFRNLQNLLQITCFFCRKFRLNEE 117

Query: 1714 KLNDYADKLDEIRKNNSVDSK-----------------------------FKSSSNEEQY 1622
            K+  YA++L  I K + V +K                              K ++ ++Q 
Sbjct: 118  KVQRYAEQLCLIAKGDIVGAKTLEAHSWGEFYFPNEEETKSAAIHTSESLSKITNLKQQQ 177

Query: 1621 SWTSFQLSEAREILSSMISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVNANI 1442
            +WTS Q SEA  ILS  + E   +  KCANC    P +TSP FG L+ + +   ++ +N 
Sbjct: 178  TWTSLQHSEALSILSKFLRE---KSKKCANCSRKNPTITSPTFGWLNKA-IQASDIRSNF 233

Query: 1441 LKGLKSHRG-TRRKDHSSEISANQTMGDNVTDLXXXXXXXXXXXXSLNGADMMVKNLMEK 1265
            +  ++S  G +  +D ++E   +Q+ GD+ + L                    +   + K
Sbjct: 234  I--MESDLGLSSTEDQNTE--GSQSRGDSASQLDEEPSSITKVQRKTKKQSRDLPPEIAK 289

Query: 1264 TESKFVKDRLLTPIEIKDHLRLLWENETRICCLMWDIQQEKKISWKQAPSYEMFFLQVLL 1085
                  + + L P E++  L+ LW NE +IC L+ D+Q+       +   Y MFFL+ LL
Sbjct: 290  QMLSSGQKKHLLPSEVEAILKDLWNNEAKICALICDVQRRSLNRLGRDKGYAMFFLKTLL 349

Query: 1084 VPPSRFRPPNKVGT-SVLEHPQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQ 908
            VPPS+FRPP   GT  VLEHPQN+L SKV ++NIA+   + +G +      +   W++LQ
Sbjct: 350  VPPSKFRPPAGSGTRGVLEHPQNVLLSKVQESNIALRNVIANGPDHP---DIVRSWMDLQ 406

Query: 907  DAVNVVIDSNTANTMKGKDVTGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVN 728
              VN++ DS+       ++V G+RQLLEKK G+ RQ MMGKRVN+ACRSVISPDPYLAVN
Sbjct: 407  RNVNLLFDSSKGWVKTEREVNGIRQLLEKKAGILRQKMMGKRVNFACRSVISPDPYLAVN 466

Query: 727  EIGIPPYFALRLTYPEKVTPWNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQR 548
            EIGIPPYFALRLTYPE+VTPWN  KLR AI NG  ++PGATH++D + M  L ++  + R
Sbjct: 467  EIGIPPYFALRLTYPERVTPWNVNKLRHAIINGADIHPGATHYKDNERMYKL-QLGRNMR 525

Query: 547  NSIAKKLLSTRGV-ASSGTSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAH 371
            NSI++KL ++RGV    G   E    ++ EGKVVYRHLQDGD++LVNRQPTLHKPSMMAH
Sbjct: 526  NSISRKLPTSRGVLVQQGKGPE----SEFEGKVVYRHLQDGDIVLVNRQPTLHKPSMMAH 581

Query: 370  IARVLKGEKTLRMHYANCSAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSG 191
            + RVLKGEKTLRMHYANCS YNADFDGDEMNVH PQDEISRAEA +IVNANKQY VPTSG
Sbjct: 582  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHLPQDEISRAEAINIVNANKQYVVPTSG 641

Query: 190  DPIRGLIQDHIVSATLLTKRDTFLSKEEYQNLVYSACI 77
            DPIRGLIQDHIVSA LLTK DTFL++E+Y  L+Y++C+
Sbjct: 642  DPIRGLIQDHIVSAVLLTKLDTFLTREQYHQLLYASCM 679


>XP_002440173.1 hypothetical protein SORBIDRAFT_09g027223, partial [Sorghum bicolor]
          Length = 799

 Score =  596 bits (1536), Expect = 0.0
 Identities = 319/680 (46%), Positives = 426/680 (62%), Gaps = 24/680 (3%)
 Frame = -3

Query: 2044 QVLTKEIGAVHFTFYSDEEVRTTSVKSITSPILFDNLNRPAPEGLYDAALGPIDNHTSCV 1865
            Q  ++E+ ++HF+FYSD+E++  S+K IT     D  N P P GL D A+GPI++  +C 
Sbjct: 8    QAASEEVDSLHFSFYSDDEIKRISIKKITKLERLDAKNLPVPGGLLDPAMGPINDTDTCK 67

Query: 1864 TCGESFLNCPGHCGHIELAMTVYNPLVFRHLLKFMNQMCTHCHHFKLTAEKLNDYADKLD 1685
            +CG++ + CPGH GHIELA  ++NPL+F  L   ++  C +CH F+L  E+++ Y ++L+
Sbjct: 68   SCGQNSVRCPGHFGHIELAKPLFNPLLFMSLRNLLHVTCFYCHKFRLNKEQVDRYVNELE 127

Query: 1684 EIRKNNSVDSKF------------------------KSSSNEEQYSWTSFQLSEAREILS 1577
             + K + V +K                         KSSS ++  +WTS QL E   I S
Sbjct: 128  LLVKGDIVGAKNLEDSVKEAYLSEEDENITETTSGDKSSSVKDNKTWTSVQLKEVLSIFS 187

Query: 1576 SMISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVNANILKGLKSHRGTRRKDH 1397
             +   +K ++ KCA C + +P ++SP+FG L + + S   V AN +   K         H
Sbjct: 188  KI---MKKRQTKCAKCDMKSPTISSPIFGWL-VKDTSASAVRANAIADFKLKGDGDA--H 241

Query: 1396 SSEISANQTMGDNVTDLXXXXXXXXXXXXSLNGADMMVKNLMEKTESKFVKDRLLTPIEI 1217
            +S  +    + +  T               L+  D  VK ++  +  K      L P E+
Sbjct: 242  NSGDTGVSGLDEETTSPGMVSKGSINEVRRLS--DDAVKEMVASSGKKH-----LLPTEV 294

Query: 1216 KDHLRLLWENETRICCLMWDIQQEKKISWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSV 1037
            +  L+ LW NE R C L+ D Q+      ++   YEMFFL  LLV P+RFRP       +
Sbjct: 295  ESILKDLWNNEARFCMLLCDFQKNTLSEPEKRRGYEMFFLNSLLVAPNRFRPSTNSSLGM 354

Query: 1036 LEHPQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKG 857
            +EHPQ++L SKV +AN+A+     S  +      V  RW++LQ +VNV+ DS+       
Sbjct: 355  MEHPQSVLLSKVQEANLALQHHNASSNHM----DVIRRWMDLQRSVNVLYDSSKGLVKSE 410

Query: 856  KDVTGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEK 677
            K+  G+RQLLEKKEG+ RQ MMGKRVNYACRSVISPDPYLAVNEIGIPP FA RLTYPEK
Sbjct: 411  KNAHGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPVFATRLTYPEK 470

Query: 676  VTPWNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQRNSIAKKLLSTRGVASSG 497
            VTPWN +KL++AIRNG  ++PGATH+ D+     L  + P +R+S+AK L ++RG     
Sbjct: 471  VTPWNTKKLQEAIRNGADIHPGATHYRDKNNTYKLQAV-PAKRHSVAKMLPASRGSICQP 529

Query: 496  TSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYANC 317
                N +    E KVVYRHLQDGD++LVNRQPTLHKPSMMAH  RVL GE+TLRMHYANC
Sbjct: 530  GRDPNCE---FESKVVYRHLQDGDIVLVNRQPTLHKPSMMAHFVRVLPGERTLRMHYANC 586

Query: 316  SAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLLT 137
            S YNADFDGDEMNVHFPQDEISRAEA +IV+ANKQY  P SGD +RGLIQDHI+ A LLT
Sbjct: 587  STYNADFDGDEMNVHFPQDEISRAEAMNIVDANKQYIGPRSGDAVRGLIQDHIIGAVLLT 646

Query: 136  KRDTFLSKEEYQNLVYSACI 77
            KRDTFL++EEY  LV+ +C+
Sbjct: 647  KRDTFLTREEYSQLVFGSCM 666


>KHG00372.1 DNA-directed RNA polymerase I subunit rpa[2] [Gossypium arboreum]
          Length = 789

 Score =  592 bits (1526), Expect = 0.0
 Identities = 321/684 (46%), Positives = 433/684 (63%), Gaps = 33/684 (4%)
 Frame = -3

Query: 2035 TKEIGAVHFTFYSDEEVRTTSVKSITSPILFDNLNRPAPEGLYDAALGPIDNHTSCVTCG 1856
            T  + AV F F + EEVR  SV  +T+  L D +NRP P GLYD  LGP+++ T C +CG
Sbjct: 9    TDSVDAVWFNFMTTEEVRKHSVLKLTNANLLDFMNRPMPGGLYDPVLGPLEDRTPCKSCG 68

Query: 1855 ESFLNCPGHCGHIELAMTVYNPLVFRHLLKFMNQMCTHCHHFKLTAEKLNDYADKLDEIR 1676
               L+CPGHCGHI+L   +YNPL+F  L   + + C  C+HF+    ++     +L  I 
Sbjct: 69   LLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLVQRTCFFCYHFRAERTEVERCISQLKLIG 128

Query: 1675 KNNSV-----DSKFKSSSNEEQYS--------------------WTSFQLSEAREILSSM 1571
            K + V     D+  K SS+  + S                    WTS QL+EA  +L+  
Sbjct: 129  KGDIVGAKRLDTDSKDSSSHPENSEGCQKLGSRLHESEAVNPKEWTSLQLTEAMSVLNKF 188

Query: 1570 ISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVNANILKGLK------SHRGTR 1409
               LK++  +C NC    P +T P FG  H S +S  ++  N+++G K         G+ 
Sbjct: 189  ---LKVKYKRCKNCDAKNPAITKPTFGWFHTSGMSGSQMRENVIRGCKMADTFSGEVGSD 245

Query: 1408 RKDHSSEISANQTMGDNVTDLXXXXXXXXXXXXSLNGADMMVKNLMEKTESKFVKDRLLT 1229
             +D +   S+ +  G ++               +   A    K  +E  + K +    L 
Sbjct: 246  IEDANDASSSEE--GVDIKKTKTPEIGFKGADGTSTKARKKAKVPLEFLKQKNLFSGPLL 303

Query: 1228 PIEIKDHLRLLWENETRICCLMWDIQQEKKISWKQAPSYEMFFLQVLLVPPSRFRPPNKV 1049
            P E+K  ++LLWENE  +C L+  IQQ+    + +   + MFFL+ +LVPP +FR P K 
Sbjct: 304  PSEVKKVMKLLWENEIELCSLINCIQQQ---GFGEKVGFSMFFLETVLVPPIKFRAPTKG 360

Query: 1048 GTSVLEHPQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTAN 869
            G SV+EHPQ +L SKVLQANI++  A  +      V  +   W++LQ ++N++ DS TA 
Sbjct: 361  GDSVMEHPQTVLLSKVLQANISLGNAYNNDLQSSKV--IVRLWMDLQQSINLLFDSKTAM 418

Query: 868  TMKGKDVTGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLT 689
            + +     G+ QLLE+KEG+FRQ MMGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRLT
Sbjct: 419  SQRRDVSPGICQLLERKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLT 478

Query: 688  YPEKVTPWNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQ--RNSIAKKLLSTR 515
            YPE+VTPWN  K+R+AI NG  ++PGATH+ D+   +   ++ P++  R SI++KL S+R
Sbjct: 479  YPERVTPWNVVKVREAIINGSEIHPGATHYVDK---LSTQRLPPNRKARISISRKLPSSR 535

Query: 514  GVASSGTSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLR 335
            G  +     +N D  + EGK+V RHLQDGDV+LVNRQPTLHKPS+MAH+ RVLKGEKT+R
Sbjct: 536  GAITQPG--KNFDY-QFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIR 592

Query: 334  MHYANCSAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIV 155
            MHYANCS YNADFDGDE+NVHFPQDEISRAEAY+IVNAN QY  P++G+P+R LIQDHIV
Sbjct: 593  MHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPLRALIQDHIV 652

Query: 154  SATLLTKRDTFLSKEEYQNLVYSA 83
            SA LLTKRDTFLS++E+  L+YS+
Sbjct: 653  SAVLLTKRDTFLSRDEFNQLLYSS 676


>XP_016497258.1 PREDICTED: DNA-directed RNA polymerase I subunit 1-like [Nicotiana
            tabacum]
          Length = 950

 Score =  593 bits (1530), Expect = 0.0
 Identities = 328/722 (45%), Positives = 438/722 (60%), Gaps = 41/722 (5%)
 Frame = -3

Query: 2047 SQVLTKEIGAVHFTFYSDEEVRTTSVKSITSPILFDNLNRPAPEGLYDAALGPIDNHTSC 1868
            +Q  ++ + AVHF+F +DEEVR  SV  +TSP L D L  P P GLYD A+GP+   + C
Sbjct: 2    AQGASEAVEAVHFSFMTDEEVRKHSVIKVTSPNLLDTLGGPLPGGLYDPAMGPLSERSQC 61

Query: 1867 VTCGESFLNCPGHCGHIELAMTVYNPLVFRHLLKFMNQMCTHCHHFKLTAEKLNDYADKL 1688
             +CG+  + CPGHCGHIEL   V+NPL+F  L   + + C +C HF+ + E++     +L
Sbjct: 62   KSCGQGTVRCPGHCGHIELVSPVFNPLLFNMLHNLLQRTCFYCFHFRASKEEVEKCVSEL 121

Query: 1687 DEIRKNNSVDSKF-------KSSSNEEQY-----------------------SWTSFQLS 1598
            + I K + + +K         S+  EE                         SW +FQ +
Sbjct: 122  ELIAKGDVIGAKTMDVLSPDNSADREESEGSHMSCTTDDLNLQDRSEYNKRPSWDNFQFT 181

Query: 1597 EAREILSSMISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVNANILK-----G 1433
            EA  ++  +   LK +  KC+NC    PK+  P FGR HM ++S K++  N +K      
Sbjct: 182  EAMAVIDRI---LKTKSEKCSNCETKNPKINKPSFGRFHM-DISSKQIIFNYIKKSQTFN 237

Query: 1432 LKSHRGTRRKDHSSEISANQTMGDNVTDLXXXXXXXXXXXXSLNGADMMVKNLMEKTESK 1253
            L+   G+        ++  + +G+  T L            +  G     ++++ + +  
Sbjct: 238  LQCTGGSEENLSPEVVNGTEPLGEAETSLSMASSDRLENSMA-RGRQGDEESIVMQQKDL 296

Query: 1252 FVKDRLLTPIEIKDHLRLLWENETRICCLMWDIQQEKKISWKQAPSYEMFFLQVLLVPPS 1073
            F    L  P +++  +  LWENE R+C    +IQ +   +  +     MFFL+ +LVPP 
Sbjct: 297  FSVAHL--PSQVRKIIEHLWENEARLCAFFCNIQGQHLNTPIKVAGPSMFFLESILVPPI 354

Query: 1072 RFRPPNKVGTSVLEHPQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNV 893
            RFRPP K G SV+EHP  +L  KVLQ+NIA+  A     NQ    ++ NR ++LQ +VNV
Sbjct: 355  RFRPPAKGGDSVMEHPHTVLLGKVLQSNIALGNA---HSNQAGRSKIINRLMDLQQSVNV 411

Query: 892  VIDSNTANTMKGKDV-TGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGI 716
            + DS TA     KDV  G+ QLLEKKEG+FRQ MMGKRVN+ACRSVISPDPYL+VNEIG+
Sbjct: 412  LFDSKTAAGPGQKDVGVGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIGV 471

Query: 715  PPYFALRLTYPEKVTPWNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSK----ILPHQR 548
            PPYFALRLTYPE+VTPWN  K+R AI NGP  +PGA  F D    V L       +   R
Sbjct: 472  PPYFALRLTYPERVTPWNAGKMRDAIINGPENHPGALSFADRISTVKLPSGNGTNIKKVR 531

Query: 547  NSIAKKLLSTRG-VASSGTSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAH 371
             +I++KL S+RG V  SG +    D  + EGKVVYRHLQDGD++LVNRQPTLHKPS+MAH
Sbjct: 532  MAISRKLPSSRGAVTQSGRN----DEYEFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAH 587

Query: 370  IARVLKGEKTLRMHYANCSAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSG 191
            + RVLKGEKTLRMHYANCS YNADFDGDEMNVHFPQDEISRAEAY+IVNAN+QY VPT G
Sbjct: 588  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKG 647

Query: 190  DPIRGLIQDHIVSATLLTKRDTFLSKEEYQNLVYSACIXXXXXXXXXXXSQPKVAICKED 11
            D +RGLIQDHIV A LLT ++TFL+ +E+  L+Y + +              KV++   +
Sbjct: 648  DTVRGLIQDHIVGAVLLTMKNTFLTLQEFNQLLYGSGVFAAGPGSTSGNHSNKVSVVDSE 707

Query: 10   GL 5
            G+
Sbjct: 708  GV 709


>XP_009394527.1 PREDICTED: DNA-directed RNA polymerase I subunit 1-like [Musa
            acuminata subsp. malaccensis]
          Length = 1641

 Score =  611 bits (1576), Expect = 0.0
 Identities = 327/673 (48%), Positives = 428/673 (63%), Gaps = 26/673 (3%)
 Frame = -3

Query: 2017 VHFTFYSDEEVRTTSVKSITSPILFDNLNRPAPEGLYDAALGPIDNHTSCVTCGESFLNC 1838
            VHF FY+ EE+R  SVK IT P L D  N P P+GLYD ALGP++++ SC +CG+  + C
Sbjct: 13   VHFNFYTSEEIRKISVKKITKPDLLDAKNSPIPDGLYDPALGPLNDNDSCKSCGQLSVRC 72

Query: 1837 PGHCGHIELAMTVYNPLVFRHLLKFMNQMCTHCHHFKLTAEKLNDYADKLDEIRKNN--- 1667
            PGHCGHI+LA  +YNPL+F+ L   +   C  CH FK+  EK+  Y  +LD I K +   
Sbjct: 73   PGHCGHIDLAKPLYNPLLFKTLQGLLQITCFFCHKFKINEEKVKRYVAQLDLIVKGDING 132

Query: 1666 ---------------------SVDSKFKSSSNEEQYSWTSFQLSEAREILSSMISELKLQ 1550
                                 S+ S F  ++N +  +WTS Q SEA  I S  + E   +
Sbjct: 133  ARSLEANTWSEIFFPEEETAESITSNF-DNANSKHLTWTSLQQSEALSIFSKFMRE---R 188

Query: 1549 KNKCANCGLNTPKVTSPVFGRLHMSELSKKEVNANILKGLKSHRGTRRKDHSSEISANQT 1370
            + KC NCG   P + SP+FG L+ +   + ++ AN +      + +    +SS     Q+
Sbjct: 189  RKKCDNCGKKNPTINSPIFGWLNKTT-QESDIRANFILDSSLDQSSSEAKYSS---ITQS 244

Query: 1369 MGDNVTDLXXXXXXXXXXXXSLNGADMMVKNLMEKTESKFVKDRLLTPIEIKDHLRLLWE 1190
             G++ +++              +     +K +    +        L P E++  L  LW+
Sbjct: 245  RGESASEMDEESPLSKKKVKLGDLPPEFIKQMSSSGQKH------LLPSEVEFILNNLWK 298

Query: 1189 NETRICCLMWDIQQEKKISWKQAPSYEMFFLQVLLVPPSRFRPP-NKVGTSVLEHPQNIL 1013
            NE  +C L+ DI  +     +    + MFFL+ LL+PPS+FRP     G  VLEHPQN L
Sbjct: 299  NEANLCMLISDIHCKNLSISRGNKGFAMFFLKTLLIPPSKFRPAAGSSGRGVLEHPQNTL 358

Query: 1012 YSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGKDVTGVRQ 833
             SKV QANIA+   + +  +      +   W++LQ  VNV+ DS        K+ +G+RQ
Sbjct: 359  LSKVQQANIALKNCIVANPDHP---DILRSWMDLQKCVNVLFDSTKGFAKSDKEASGIRQ 415

Query: 832  LLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNEEK 653
            LLEKK G+ RQ MMGKRVN+ACRSVISPDPYLAVNEIGIPPYF+LRLTYPE+VTPWN  K
Sbjct: 416  LLEKKSGILRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFSLRLTYPERVTPWNVNK 475

Query: 652  LRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQRNSIAKKLLSTRGV-ASSGTSVENID 476
            LR AI NG  ++PGATH++D++ M  L +   + R++I++KL ++RG+ A  GT  E+  
Sbjct: 476  LRCAIINGADIHPGATHYKDKERMYKL-QASQNMRSAISRKLPTSRGMTAQLGTGPES-- 532

Query: 475  SNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYANCSAYNADF 296
              + EGKVVYRHLQDGD++LVNRQPTLHKPSMMAH+ RVLKGEKTLRMHYANCS YNADF
Sbjct: 533  --EFEGKVVYRHLQDGDIVLVNRQPTLHKPSMMAHVVRVLKGEKTLRMHYANCSTYNADF 590

Query: 295  DGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLLTKRDTFLS 116
            DGDEMNVH PQDEISRAEA +IVNANKQY VPTSG PIRGLIQDHIVSA LLTK DTFL+
Sbjct: 591  DGDEMNVHLPQDEISRAEAINIVNANKQYIVPTSGHPIRGLIQDHIVSAVLLTKMDTFLT 650

Query: 115  KEEYQNLVYSACI 77
            +EEY  L+Y++ +
Sbjct: 651  REEYHQLLYASSV 663


>ACN85329.1 putative RNA polymerase A(I) large subunit, partial [Oryza
            brachyantha]
          Length = 1138

 Score =  595 bits (1533), Expect = 0.0
 Identities = 318/679 (46%), Positives = 423/679 (62%), Gaps = 23/679 (3%)
 Frame = -3

Query: 2044 QVLTKEIGAVHFTFYSDEEVRTTSVKSITSPILFDNLNRPAPEGLYDAALGPIDNHTSCV 1865
            Q  ++E+ ++HF+FY+D+E++  SVK IT P   D  N P P GL D A+GP  +  +C 
Sbjct: 7    QAASEEVESIHFSFYNDDEIKRISVKQITKPDRLDAKNCPVPGGLLDPAMGPTSDTDTCK 66

Query: 1864 TCGESFLNCPGHCGHIELAMTVYNPLVFRHLLKFMNQMCTHCHHFKLTAEKLNDYADKLD 1685
            +CG+  + CPGH GHIELA  ++NPL+F  L   ++  C HCH F+L  E+++ Y D+L+
Sbjct: 67   SCGQHSVRCPGHFGHIELAKPLFNPLLFLSLKNLLHMTCFHCHKFRLNREQVDRYTDELE 126

Query: 1684 EIRKNNSV----------------DSKFKSSSNE-------EQYSWTSFQLSEAREILSS 1574
             + K +                  D K +++S +       E  +WTS QL   +E+LS 
Sbjct: 127  LLVKGDIAHAKNLEDSGGKVLLEEDDKTEATSGDKSTCSESENKTWTSIQL---KEVLSI 183

Query: 1573 MISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVNANILKGLKSHRGTRRKDHS 1394
              + +K ++ KC +C    PK++ P++G L + +     V AN +   K     R   H 
Sbjct: 184  FANFMKKRQKKCTHCNKKNPKISHPIYGWL-IKDADISAVRANAIADAKLSGDVRF--HD 240

Query: 1393 SEISANQTMGDNVTDLXXXXXXXXXXXXSLNGADMMVKNLMEKTESKFVKDRLLTPIEIK 1214
            S  +    + + +T               ++  D  +K ++  +  K      L   E++
Sbjct: 241  SRETGVSGLDEELTSPGTSSRGSTNETRRIS--DDTIKEMVASSGKKH-----LLATEVE 293

Query: 1213 DHLRLLWENETRICCLMWDIQQEKKISWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVL 1034
              L+ LW+NE R C L+ D QQ      ++   YEMFFL+ LLV P+RFRP       ++
Sbjct: 294  SILKDLWKNEARFCMLLCDFQQNTLNVSEKKRGYEMFFLKNLLVAPNRFRPSIHSSLGIM 353

Query: 1033 EHPQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGK 854
            EHPQNIL SKV +AN+A+ ++  +  +     +V  RW+++Q +VNV+ DS+       K
Sbjct: 354  EHPQNILLSKVQEANLALQQSNAASNHM----EVLRRWMDMQRSVNVLYDSSKGLAKNEK 409

Query: 853  DVTGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEKV 674
            +  G+RQLLEKKEG+ RQ MMGKRVNYACRSVISPDPYLAVNEIGIPP FA RLTYPEKV
Sbjct: 410  NANGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPVFATRLTYPEKV 469

Query: 673  TPWNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQRNSIAKKLLSTRGVASSGT 494
            TPWN  KL++AI NG  ++PGATH+ D   M  L +  P +R +IAK L ++RG  S   
Sbjct: 470  TPWNARKLQEAINNGADIHPGATHYRDNNNMYKL-QAAPAKRRAIAKMLPASRGSISQAG 528

Query: 493  SVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYANCS 314
                 +    E KVVYRHLQDGDV+LVNRQPTLHKPSMMAH  RVL GEKT+RMHYANCS
Sbjct: 529  KDPKCE---FESKVVYRHLQDGDVVLVNRQPTLHKPSMMAHFVRVLPGEKTIRMHYANCS 585

Query: 313  AYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLLTK 134
             YNADFDGDEMNVHFPQDEISRAEA +IV+ANKQY  P SGD +RGLIQDHIV A LLTK
Sbjct: 586  TYNADFDGDEMNVHFPQDEISRAEAINIVDANKQYIGPRSGDAVRGLIQDHIVGAVLLTK 645

Query: 133  RDTFLSKEEYQNLVYSACI 77
             DTFLS+EEY  LVY +C+
Sbjct: 646  LDTFLSREEYNQLVYGSCV 664


>JAU73211.1 DNA-directed RNA polymerase I subunit rpa1 [Noccaea caerulescens]
          Length = 1626

 Score =  607 bits (1564), Expect = 0.0
 Identities = 324/679 (47%), Positives = 429/679 (63%), Gaps = 15/679 (2%)
 Frame = -3

Query: 2074 ANMTSSNARSQVLTKEIGAVHFTFYSDEEVRTTSVKSITSPILFDNLNRPAPEGLYDAAL 1895
            A   ++   SQV    + +V F+F  +++VR  S   +T+P+L DN+ RP P GLYD  L
Sbjct: 2    AQSQTTEGASQV----VESVKFSFMKEQDVRNHSFLKVTNPVLLDNVERPVPGGLYDLVL 57

Query: 1894 GPIDNHTSCVTCGESFLNCPGHCGHIELAMTVYNPLVFRHLLKFMNQMCTHCHHFKLTAE 1715
            GP+D+ T C +CG+  LNCPGHCGHIEL   +Y+PL+F  L  F+ + C +CHHF    +
Sbjct: 58   GPLDDRTPCKSCGQLSLNCPGHCGHIELVYPIYHPLLFSLLFNFLQRTCFYCHHFMAKKK 117

Query: 1714 KLNDYADKLDEIRKNNSVDSKFKSSSNEEQYS-----------WTSFQLSEAREILSSMI 1568
             +     +L  I K + V +K   + + +  +           WTS Q +E   +++   
Sbjct: 118  DVEKCVSQLKLIIKGDIVSAKQLDTEDNDSSAECEDLDMGKERWTSLQFAEVTRVMNKFF 177

Query: 1567 SELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVNANILKGLKSHRGTRRKDHSSE 1388
               +L+   C  C    PK+  P+FG + M+ +       N ++GLK        D+ S 
Sbjct: 178  ---RLKSKCCDKCHGKPPKLEKPMFGWVRMN-MKGSAARDNEIRGLKLKSRVENSDNDSG 233

Query: 1387 ISANQTMGDNVTDLXXXXXXXXXXXXSLNGADMMVKNLMEKT--ESKFVKDRLLTPIEIK 1214
            I A   + D V                        K   EKT  E K    + + PIE+K
Sbjct: 234  IDALSEVEDGV------------------------KEKREKTSGEKKQKDKKDVLPIEVK 269

Query: 1213 DHLRLLWENETRICCLMWDIQQEKKISWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVL 1034
            + L+ LWENE   C  + D+ + +     +   Y MFFL+ +LVPP++FR P K G SV+
Sbjct: 270  EILKDLWENEHEFCSFIGDLWKSES----EKTDYSMFFLESVLVPPTKFRAPTKGGDSVM 325

Query: 1033 EHPQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGK 854
            EHPQ +   KVLQANI +  A  +  +Q    ++ +RW+NLQ++VNV+ DS TA     K
Sbjct: 326  EHPQTVGLIKVLQANINLGNACTNKLDQS---KIVSRWMNLQESVNVLFDSKTATVQSQK 382

Query: 853  DVTGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEKV 674
            + +G+ QLLEKKEGLFRQ MMGKRVN+ACRSVISPDPY+AVN+IGIPP FAL+LTYPE+V
Sbjct: 383  EGSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPVFALKLTYPERV 442

Query: 673  TPWNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQ--RNSIAKKLLSTRGVASS 500
            TPWN EKLRQAI NGP ++PGATH+ D+   V   K+ P +  R +IA+KL S+RG    
Sbjct: 443  TPWNVEKLRQAIINGPDIHPGATHYSDK---VCTLKLPPSKKARIAIARKLFSSRGAT-- 497

Query: 499  GTSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYAN 320
             T +        EGKVVYRH+QDGDV+LVNRQPTLHKPS+MAH+ RVLKGEKTLR+HYAN
Sbjct: 498  -TEIGKTCDINFEGKVVYRHMQDGDVVLVNRQPTLHKPSIMAHMVRVLKGEKTLRLHYAN 556

Query: 319  CSAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLL 140
            CS YNADFDGDEMNVHFPQDEISRAEAY+IVNAN QY  P++GDP+R LIQDHIVS+ LL
Sbjct: 557  CSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGDPLRALIQDHIVSSVLL 616

Query: 139  TKRDTFLSKEEYQNLVYSA 83
            TKRDTFL K+E+  L++S+
Sbjct: 617  TKRDTFLDKDEFNQLLFSS 635


>JAU46626.1 DNA-directed RNA polymerase I subunit rpa1 [Noccaea caerulescens]
          Length = 1626

 Score =  606 bits (1563), Expect = 0.0
 Identities = 324/679 (47%), Positives = 429/679 (63%), Gaps = 15/679 (2%)
 Frame = -3

Query: 2074 ANMTSSNARSQVLTKEIGAVHFTFYSDEEVRTTSVKSITSPILFDNLNRPAPEGLYDAAL 1895
            A   ++   SQV    + +V F+F  +++VR  S   +T+P+L DN+ RP P GLYD  L
Sbjct: 2    AQSQTTEGASQV----VESVKFSFMKEQDVRNHSFLKVTNPVLLDNVERPVPGGLYDLVL 57

Query: 1894 GPIDNHTSCVTCGESFLNCPGHCGHIELAMTVYNPLVFRHLLKFMNQMCTHCHHFKLTAE 1715
            GP+D+ T C +CG+  LNCPGHCGHIEL   +Y+PL+F  L  F+ + C +CHHF    +
Sbjct: 58   GPLDDRTPCKSCGQLSLNCPGHCGHIELVYPIYHPLLFSLLFNFLQRTCFYCHHFMAKKK 117

Query: 1714 KLNDYADKLDEIRKNNSVDSKFKSSSNEEQYS-----------WTSFQLSEAREILSSMI 1568
             +     +L  I K + V +K   + + +  +           WTS Q +E   +++   
Sbjct: 118  DVERCVSQLKLIIKGDIVSAKQLDTEDNDSSAECEDLDMGKERWTSLQFAEVTRVMNKFF 177

Query: 1567 SELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVNANILKGLKSHRGTRRKDHSSE 1388
               +L+   C  C    PK+  P+FG + M+ +       N ++GLK        D+ S 
Sbjct: 178  ---RLKSKCCDKCHGKPPKLEKPMFGWVRMN-MKGSAARDNEIRGLKLKSRVENSDNDSG 233

Query: 1387 ISANQTMGDNVTDLXXXXXXXXXXXXSLNGADMMVKNLMEKT--ESKFVKDRLLTPIEIK 1214
            I A   + D V                        K   EKT  E K    + + PIE+K
Sbjct: 234  IDALSEVEDGV------------------------KEKREKTSGEKKQKDKKDVLPIEVK 269

Query: 1213 DHLRLLWENETRICCLMWDIQQEKKISWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVL 1034
            + L+ LWENE   C  + D+ + +     +   Y MFFL+ +LVPP++FR P K G SV+
Sbjct: 270  EILKDLWENEHEFCSFIGDLWKSES----EKTDYSMFFLESVLVPPTKFRAPTKGGDSVM 325

Query: 1033 EHPQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGK 854
            EHPQ +   KVLQANI +  A  +  +Q    ++ +RW+NLQ++VNV+ DS TA     K
Sbjct: 326  EHPQTVGLIKVLQANINLGNACTNKLDQS---KIVSRWMNLQESVNVLFDSKTATVQSQK 382

Query: 853  DVTGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEKV 674
            + +G+ QLLEKKEGLFRQ MMGKRVN+ACRSVISPDPY+AVN+IGIPP FAL+LTYPE+V
Sbjct: 383  EGSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPVFALKLTYPERV 442

Query: 673  TPWNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQ--RNSIAKKLLSTRGVASS 500
            TPWN EKLRQAI NGP ++PGATH+ D+   V   K+ P +  R +IA+KL S+RG    
Sbjct: 443  TPWNVEKLRQAIINGPDIHPGATHYSDK---VCTLKLPPSKKARIAIARKLFSSRGAT-- 497

Query: 499  GTSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYAN 320
             T +        EGKVVYRH+QDGDV+LVNRQPTLHKPS+MAH+ RVLKGEKTLR+HYAN
Sbjct: 498  -TEIGKTCDINFEGKVVYRHMQDGDVVLVNRQPTLHKPSIMAHMVRVLKGEKTLRLHYAN 556

Query: 319  CSAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLL 140
            CS YNADFDGDEMNVHFPQDEISRAEAY+IVNAN QY  P++GDP+R LIQDHIVS+ LL
Sbjct: 557  CSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGDPLRALIQDHIVSSVLL 616

Query: 139  TKRDTFLSKEEYQNLVYSA 83
            TKRDTFL K+E+  L++S+
Sbjct: 617  TKRDTFLDKDEFNQLLFSS 635


>XP_015866147.1 PREDICTED: DNA-directed RNA polymerase I subunit 1 [Ziziphus jujuba]
          Length = 1767

 Score =  609 bits (1571), Expect = 0.0
 Identities = 335/704 (47%), Positives = 441/704 (62%), Gaps = 47/704 (6%)
 Frame = -3

Query: 2053 ARSQVLTKEIGAVHFTFYSDEEVRTTSVKSITSPILFDNLNRPAPEGLYDAALGPIDNHT 1874
            A S+V T+ + AV F F +DE+VR  S   +TSPIL +++ RP P GLYD A+GP+ +  
Sbjct: 2    AHSEVATESVEAVQFGFMTDEDVRKHSFVKVTSPILLNDVERPIPGGLYDPAMGPLHDDA 61

Query: 1873 SCVTCGESFLNCPGHCGHIELAMTVYNPLVFRHLLKFMNQMCTHCHHFKLTAEKLNDYAD 1694
             C++CG+    CPGHCGHI+L   VYNPL+F +L   + + C  C+HF+   +++++   
Sbjct: 62   YCISCGQRSYFCPGHCGHIDLVSPVYNPLLFDNLYDLLQRTCFSCYHFRAGRKQVDECIS 121

Query: 1693 KLDEIRKNNSVDSKFKSSSNEEQYS-------------------WTSFQLSEAREILSSM 1571
            +L+ I + + V +K   S +  Q+S                   WTS   +E   +L  +
Sbjct: 122  QLELIMRGDVVGAKELDSDSPSQFSYAKDDDGSMCHSAESKQQVWTSLHFTEVMSVLKKV 181

Query: 1570 IS----------------ELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVNANIL 1439
            +                 + KL+  KC NC    PK++ P FG LH S +S   + AN++
Sbjct: 182  LKPNSAKRDSVKQNPFKQKNKLKTTKCMNCSAKNPKISRPTFGWLHKS-MSGAHIRANVI 240

Query: 1438 KGLK-------SHRGTRRKDHSSEISANQTMGDNVTDLXXXXXXXXXXXXSLNGADMMVK 1280
             G          H+ T   D   EI  +    DN  D             S +      K
Sbjct: 241  SGSNIEGPFADGHQETSVSDE--EIINDSPPWDNDVDKDNSDAFRALSPGSQSSVKKNHK 298

Query: 1279 NLMEKTESKFVKDRL-----LTPIEIKDHLRLLWENETRICCLMWDIQQEKKISWKQAPS 1115
                K  +K+ K +      L P E+K+ LRLLWENE ++C L+ +I+ +    + +  S
Sbjct: 299  TKGSKVPNKYFKQKKSSTGPLLPSEVKEILRLLWENEAQLCSLICNIRHQ---GFGKKAS 355

Query: 1114 YEMFFLQVLLVPPSRFRPPNKVGTSVLEHPQNILYSKVLQANIAVVEALKSGKNQGYVFQ 935
            Y MFFL+ +LVPP +FRPP K G SV+EHPQ +L +KVLQ+NI +  A  +  N GY  +
Sbjct: 356  YTMFFLENVLVPPIKFRPPAKGGDSVMEHPQTVLLTKVLQSNIDLGNAHIN--NSGYA-K 412

Query: 934  VTNRWLNLQDAVNVVIDSNTANTMKGKDVTGVRQLLEKKEGLFRQNMMGKRVNYACRSVI 755
            + +RW+ LQ ++NV+ +S +A   K +  TG+ QLLEKKEGLFRQ MMGKRVNYACRSVI
Sbjct: 413  IVSRWMALQQSINVMYNSKSAAGRK-EMATGICQLLEKKEGLFRQKMMGKRVNYACRSVI 471

Query: 754  SPDPYLAVNEIGIPPYFALRLTYPEKVTPWNEEKLRQAIRNGPHVYPGATHFEDEQGMVD 575
            SPDPYLAVNEIGIPPYFALRLTYPE+VTPWN  KLR AI NG  ++PGATH+ D+   V 
Sbjct: 472  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVGKLRDAIINGSEIHPGATHYVDKLSTVR 531

Query: 574  LSKILPHQRNSIAKKLLSTRGVASSGTSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTL 395
            L  +    R S+++KL S+RG         + +S   EGK VYRHLQDGD++LVNRQPTL
Sbjct: 532  L--LARKSRISVSRKLPSSRGGLVQHGKFCDYES---EGKFVYRHLQDGDIVLVNRQPTL 586

Query: 394  HKPSMMAHIARVLKGEKTLRMHYANCSAYNADFDGDEMNVHFPQDEISRAEAYSIVNANK 215
            HKPS+MAH+ RVLKGEKT+RMHYANCS YNADFDGDEMNVHFPQDEISRAEAY+IVNAN 
Sbjct: 587  HKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANN 646

Query: 214  QYTVPTSGDPIRGLIQDHIVSATLLTKRDTFLSKEEYQNLVYSA 83
            QY  PTSG+PIR LIQDHIVSA LL+K+DTFL  EE+  L+YS+
Sbjct: 647  QYVKPTSGEPIRALIQDHIVSAVLLSKKDTFLRWEEFNQLLYSS 690


>XP_010666878.1 PREDICTED: DNA-directed RNA polymerase I subunit 1 [Beta vulgaris
            subsp. vulgaris] KMS95772.1 hypothetical protein
            BVRB_005160 [Beta vulgaris subsp. vulgaris]
          Length = 1702

 Score =  607 bits (1565), Expect = 0.0
 Identities = 327/676 (48%), Positives = 437/676 (64%), Gaps = 23/676 (3%)
 Frame = -3

Query: 2047 SQVLTKEIGAVHFTFYSDEEVRTTSVKSITSPILFDNLNRPAPEGLYDAALGPIDNHTSC 1868
            S+V T+ + AVHF   +D+EVR  SV+ IT+  L + + RP P GLYD ALGP+D+ +SC
Sbjct: 5    SEVATETVAAVHFGVMTDDEVRKLSVRKITNQNLLNTVGRPEPGGLYDPALGPLDDDSSC 64

Query: 1867 VTCGESFLNCPGHCGHIELAMTVYNPLVFRHLLKFMNQMCTHCHHFKLTAEKLNDYADKL 1688
              CG+    CPGHCGHI+L   VY+PL+F  L + +   C  C+HFK + E++     KL
Sbjct: 65   KICGQRSFYCPGHCGHIDLVSLVYHPLLFNRLYRLLQGTCLACYHFKASREEVKMCICKL 124

Query: 1687 DEIRKNNSVDSKFKSSSN------------------EEQYSWTSFQLSEAREILSSMISE 1562
            + I+K N V ++  +SS                   + Q  WTSFQL+EA  +L S    
Sbjct: 125  NLIKKGNIVRARELNSSERPDDSDSSLYLGGLSEDPKHQCGWTSFQLTEATAVLKSF--- 181

Query: 1561 LKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVNANILKGLKSHRGTRRKDHSSEIS 1382
            LK +  KC  CG   P +T P+FG +HM  L+   + ANI++G K        D    +S
Sbjct: 182  LKKRSAKCY-CGAKNPSITKPIFGWIHMGGLNDNHIKANIIRGHKLAGPLAEGDDDKSMS 240

Query: 1381 ANQTMGDNVTDLXXXXXXXXXXXXSLNGADMMVKNLMEKTESKFVKDRLLTPIEIKDHLR 1202
              +   D  +                       K+ ++    K+   R L P E++  L 
Sbjct: 241  EVENAEDQDSGRVASNRRKK-------------KDDLQSDFLKWKTARSLLPTEVRGILE 287

Query: 1201 LLWENETRICCLMWDIQQ-EKKISWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVLEHP 1025
             LWENE R+C  + DIQQ ++ IS K+A ++ MFFL+ LLVPP++FRPP+K G +V+EHP
Sbjct: 288  RLWENEARLCSFICDIQQHQQNISQKKA-AFTMFFLKSLLVPPTKFRPPSKGGDAVMEHP 346

Query: 1024 QNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGKDV- 848
            Q +L  K+L+ NI++  A +    + Y+    +RW+NLQ +VNV+ DS     ++ +D  
Sbjct: 347  QTVLLGKILECNISLANAYEQHAERNYIL---SRWMNLQQSVNVLFDSKGGAGLRQRDTA 403

Query: 847  TGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTP 668
            +G+ QLLEKKEGLFRQ MMGKRVN+ACRSVISPDPYLAVNEIGIPP FAL+LTYPE+VTP
Sbjct: 404  SGICQLLEKKEGLFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPVFALKLTYPERVTP 463

Query: 667  WNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQRNSIA--KKLLSTRGVAS-SG 497
            WN   LR AI NGP ++PGATH+ D+   V   K+ P +R+ I+  +KL S+RGV + SG
Sbjct: 464  WNVTSLRDAIVNGPEIHPGATHYVDKVATV---KLPPTRRSRISYSRKLPSSRGVTTQSG 520

Query: 496  TSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYANC 317
             +     +N  EGK+VYRHL++GD++LVNRQPTLHKPS++A   RVL GEKT+R HYANC
Sbjct: 521  KTF----TNDYEGKIVYRHLRNGDIVLVNRQPTLHKPSIIALKVRVLPGEKTIRFHYANC 576

Query: 316  SAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLLT 137
             ++NADFDGDE+NVHFPQDEISRAEAY+IVNA+ QY VPT GDP R LIQDHIV A LLT
Sbjct: 577  DSFNADFDGDEINVHFPQDEISRAEAYNIVNADNQYIVPTRGDPKRALIQDHIVGAVLLT 636

Query: 136  KRDTFLSKEEYQNLVY 89
            KRDTFL+ +E+  L+Y
Sbjct: 637  KRDTFLTFQEFNELLY 652


>KFK35011.1 hypothetical protein AALP_AA5G222600 [Arabis alpina]
          Length = 1658

 Score =  606 bits (1562), Expect = 0.0
 Identities = 317/666 (47%), Positives = 429/666 (64%), Gaps = 15/666 (2%)
 Frame = -3

Query: 2035 TKEIGAVHFTFYSDEEVRTTSVKSITSPILFDNLNRPAPEGLYDAALGPIDNHTSCVTCG 1856
            T+ + +V F+F ++E+V+  S   +T+P+L DN++RP P GLYD  LGP+D+ T C +CG
Sbjct: 10   TQMVESVRFSFMTEEDVQKHSFLKVTNPVLLDNVDRPVPGGLYDPLLGPLDDRTPCKSCG 69

Query: 1855 ESFLNCPGHCGHIELAMTVYNPLVFRHLLKFMNQMCTHCHHFKLTAEKLNDYADKLDEIR 1676
            +  L CPGHCGHIEL   +Y+PL+F  L +F+ + C  CHHFK     +     +L  I 
Sbjct: 70   QLTLGCPGHCGHIELLYPIYHPLLFNLLYQFLQRTCFFCHHFKAKRPDVVKCVSQLKLIM 129

Query: 1675 KNNSVDSKFKSSSNEEQYS------------WTSFQLSEAREILSSMISELKLQKNKCAN 1532
            K + V +K   S   E  S            WTS Q +E  ++++     L+L    C N
Sbjct: 130  KGDIVAAKQLDSGKAEMSSDECEDSDMGKQRWTSLQFAEVTDVMNKF---LRLTSKVCDN 186

Query: 1531 CGLNTPKVTSPVFGRLHMSELSKKEVNANILKGLKSHRGTRRKDHSSEISANQTMGDNVT 1352
            C    PK+  P+F  + M  +   ++  N+++GLK  + +   ++S +       GD+  
Sbjct: 187  CKAKPPKLEKPMFAWVRMGGMKGSDIGDNVIRGLKMKKSSSNVENSDD-------GDDSG 239

Query: 1351 DLXXXXXXXXXXXXSLNGADMMVKNLMEKTESKFVKDRLLTPIEIKDHLRLLWENETRIC 1172
                             G+++      E  E K  +D  L P E+K+ L+ LW+NE   C
Sbjct: 240  ISALSDVEDGARKKRKKGSEVA----KESAEQKDKRD--LLPTEVKEILQGLWQNEYEFC 293

Query: 1171 CL---MWDIQQEKKISWKQAPSYEMFFLQVLLVPPSRFRPPNKVGTSVLEHPQNILYSKV 1001
                 +W  + EK  S        MFF++ +LVPP++FR P K G SV+EHPQ +  +KV
Sbjct: 294  SFIGDLWKSESEKMDS-------SMFFMESVLVPPTKFRAPTKGGDSVMEHPQTLGLNKV 346

Query: 1000 LQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTANTMKGKDVTGVRQLLEK 821
            LQ+NIA+  A  +  +Q    ++ +RW+NLQ++VNV+ DS TA     K+ +G+ QLLEK
Sbjct: 347  LQSNIALGNARTNKLDQS---KIISRWMNLQESVNVLFDSKTATVQGQKEGSGICQLLEK 403

Query: 820  KEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNEEKLRQA 641
            KEGLFRQ MMGKRVN+ACRSVISPDPY+AVN+IGIPP FAL+LTYPE+VTPWN EKLR+A
Sbjct: 404  KEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNAEKLREA 463

Query: 640  IRNGPHVYPGATHFEDEQGMVDLSKILPHQRNSIAKKLLSTRGVASSGTSVENIDSNKVE 461
            I NGP ++PGATH+ D+   + L      +R +IA+KLLS RG  +      +I+    E
Sbjct: 464  IINGPDIHPGATHYSDKVSKMKLPSTRK-ERIAIARKLLSARGATTELGKTCDIN---FE 519

Query: 460  GKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTLRMHYANCSAYNADFDGDEM 281
            GKVVYRH+QDGDV+LVNRQPTLHKPS+MAHI RVL+GEKTLR+HYANCS YNADFDGDEM
Sbjct: 520  GKVVYRHMQDGDVVLVNRQPTLHKPSIMAHIVRVLRGEKTLRLHYANCSTYNADFDGDEM 579

Query: 280  NVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLLTKRDTFLSKEEYQ 101
            NVHFPQDEISRAEAY+IVNAN QY  P++GDP+R LIQDHIV + LLTKRDTF  K+E+ 
Sbjct: 580  NVHFPQDEISRAEAYNIVNANNQYARPSNGDPLRALIQDHIVGSVLLTKRDTFFDKDEFN 639

Query: 100  NLVYSA 83
             L++S+
Sbjct: 640  QLLFSS 645


>EOY09355.1 Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score =  605 bits (1561), Expect = 0.0
 Identities = 334/688 (48%), Positives = 440/688 (63%), Gaps = 37/688 (5%)
 Frame = -3

Query: 2035 TKEIGAVHFTFYSDEEVRTTSVKSITSPILFDNLNRPAPEGLYDAALGPIDNHTSCVTCG 1856
            T  + AV F F + EEVR  S   +T+  L D ++RP P GLYDA LGP+++ T C +CG
Sbjct: 9    TDSVEAVRFNFMTTEEVRKHSFLKVTNANLLDLMDRPMPGGLYDAVLGPLEDRTPCKSCG 68

Query: 1855 ESFLNCPGHCGHIELAMTVYNPLVFRHLLKFMNQMCTHCHHFKLTAEKLNDYADKLDEIR 1676
               L+CPGHCGHI+L   +YNPL+F  L   + ++C  C+HF+    ++     +L  I 
Sbjct: 69   LLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLLQRICFFCYHFRAEKTEVERCVSQLKLIG 128

Query: 1675 KNNSVDSKFKSSSNEEQYS-------------------------WTSFQLSEAREILSSM 1571
              + V +K   S + +  S                         WTS QL EA  +L++ 
Sbjct: 129  NGDIVGAKRLDSDSADASSYSDYNEGSQESGSIVHNSEAVKPKEWTSLQLMEAMSVLNNF 188

Query: 1570 ISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVNANILKGLK-----SHRGTRR 1406
               LKL+ NKC NC    P +T PVFG LHM+ +   ++  N+++G K     S      
Sbjct: 189  ---LKLKYNKCKNCDAKNPNITKPVFGWLHMNGMLGAQMRENVIRGCKMVDTFSDEAGSG 245

Query: 1405 KDHSSEISANQTMGDNVTDLXXXXXXXXXXXXSLNGADMMVKNL---MEKTESKFVKDRL 1235
             + + ++S++   G+ V                 NGA    K     +E  + K +    
Sbjct: 246  LEDADDVSSS---GNGVDIAEMDTSEIGFTGSEGNGAKARKKKAQVPLEFMKQKNLFSGP 302

Query: 1234 LTPIEIKDHLRLLWENETRICCLMWDIQQEKKISWKQAPSYEMFFLQVLLVPPSRFRPPN 1055
            L P E+K   +LLWENE  +C ++ DIQQ+    + +   Y MFFL+ +LVPP +FR P 
Sbjct: 303  LLPSEVKKITKLLWENEVELCSIISDIQQQ---GFGKKVGYSMFFLETILVPPIKFRAPT 359

Query: 1054 KVGTSVLEHPQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNT 875
            K G SV+EHPQ +L SKVLQANI++  A  +         V   W++LQ +VN++ DS T
Sbjct: 360  KGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSKA--VVRLWMDLQQSVNLLFDSKT 417

Query: 874  ANTMKGKDVT-GVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFAL 698
            A + +G+DV+ G+ QLLEKKEG+FRQ MMGKRVN+ACRSVISPDPYLAVNEIGIPPYFAL
Sbjct: 418  AMS-QGRDVSSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFAL 476

Query: 697  RLTYPEKVTPWNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQ--RNSIAKKLL 524
            RLTYPE+VTPWN  KLR+AI NG   +PGATH+ D+   +   ++ P Q  R SI++KL 
Sbjct: 477  RLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDK---LSTKRLPPSQKARISISRKLP 533

Query: 523  STRG-VASSGTSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGE 347
            S+RG +A  G   +N+D  + EGK+V RHLQDGDV+LVNRQPTLHKPS+MAH+ RVLKGE
Sbjct: 534  SSRGAIAQPG---KNLDY-EFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 589

Query: 346  KTLRMHYANCSAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQ 167
            KT+RMHYANCS YNADFDGDE+NVHFPQDEISRAEAY+IVNAN QY  P++G+PIR LIQ
Sbjct: 590  KTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQ 649

Query: 166  DHIVSATLLTKRDTFLSKEEYQNLVYSA 83
            DHIVSA LLTKRDTFLS++E+  L+YS+
Sbjct: 650  DHIVSAVLLTKRDTFLSRDEFNQLLYSS 677


>JAV01220.1 DNA-directed RNA polymerase I subunit rpa1 [Noccaea caerulescens]
          Length = 1632

 Score =  605 bits (1559), Expect = 0.0
 Identities = 327/685 (47%), Positives = 431/685 (62%), Gaps = 21/685 (3%)
 Frame = -3

Query: 2074 ANMTSSNARSQVLTKEIGAVHFTFYSDEEVRTTSVKSITSPILFDNLNRPAPEGLYDAAL 1895
            A   ++   SQV    + +V F+F  +++VR  S   +T+P+L DN+ RP P GLYD  L
Sbjct: 2    AQSQTTEGASQV----VESVKFSFMKEQDVRKHSFLKVTNPVLLDNVERPVPGGLYDLVL 57

Query: 1894 GPIDNHTSCVTCGESFLNCPGHCGHIELAMTVYNPLVFRHLLKFMNQMCTHCHHFKLTAE 1715
            GP+D+ T C +CG+  LNCPGHCGHIEL   +Y+PL+F  L  F+ + C +CHHF    +
Sbjct: 58   GPLDDRTPCKSCGQLSLNCPGHCGHIELVYPIYHPLLFSLLFNFLQRTCFYCHHFMAKKK 117

Query: 1714 KLNDYADKLDEIRKNNSVDSKF----------KSSSNEE-------QYSWTSFQLSEARE 1586
             +     +L  I K + V +K            + S+EE       +  WTS Q +E   
Sbjct: 118  DVERCVSQLKLIIKGDIVSAKQLDTEKQLDTEDNDSSEECEDLDMGKERWTSLQFAEVTR 177

Query: 1585 ILSSMISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVNANILKGLKSHRGTRR 1406
            +++      +L+   C  C    PK+  P+FG + M+ +       N ++GLK       
Sbjct: 178  VMNKFF---RLKSKCCDKCHGKPPKLEKPMFGWVRMN-MKGSAARDNEIRGLKLKSRVEN 233

Query: 1405 KDHSSEISANQTMGDNVTDLXXXXXXXXXXXXSLNGADMMVKNLMEKT--ESKFVKDRLL 1232
             D+ S I A   + D V                        K   EKT  E K  + + +
Sbjct: 234  SDNDSGIDALSEVEDGV------------------------KEKREKTSGEKKQKEKKDV 269

Query: 1231 TPIEIKDHLRLLWENETRICCLMWDIQQEKKISWKQAPSYEMFFLQVLLVPPSRFRPPNK 1052
             PIE+K+ L+ LWENE   C  + D+ + +     +   Y MFFL  +LVPP++FR P K
Sbjct: 270  LPIEVKEILKDLWENEHEFCSFIGDLWKSES----EKTDYSMFFLASVLVPPTKFRAPTK 325

Query: 1051 VGTSVLEHPQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTA 872
             G SV+EHPQ +   KVLQANI +  A  +  +Q    ++ +RW+NLQ++VNV+ DS TA
Sbjct: 326  GGDSVMEHPQTVGLIKVLQANINLGNACTNKLDQS---KIVSRWMNLQESVNVLFDSKTA 382

Query: 871  NTMKGKDVTGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRL 692
                 K+ +G+ QLLEKKEGLFRQ MMGKRVN+ACRSVISPDPY+AVN+IGIPP FAL+L
Sbjct: 383  TVQSQKEGSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPVFALKL 442

Query: 691  TYPEKVTPWNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQ--RNSIAKKLLST 518
            TYPE+VTPWN EKLRQAI NGP ++PGATH+ D+   V   K+ P +  R +IA+KL S+
Sbjct: 443  TYPERVTPWNVEKLRQAIINGPDIHPGATHYSDK---VSTLKLPPSKKARIAIARKLFSS 499

Query: 517  RGVASSGTSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKTL 338
            RG     T +        EGKVVYRH+QDGDV+LVNRQPTLHKPS+MAH+ RVLKGEKTL
Sbjct: 500  RGAT---TEIGKTCDINFEGKVVYRHMQDGDVVLVNRQPTLHKPSIMAHMVRVLKGEKTL 556

Query: 337  RMHYANCSAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHI 158
            R+HYANCS YNADFDGDEMNVHFPQDEISRAEAY+IVNAN QY  P++GDP+R LIQDHI
Sbjct: 557  RLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGDPLRALIQDHI 616

Query: 157  VSATLLTKRDTFLSKEEYQNLVYSA 83
            VS+ LLTKRDTFL K+E+  L++S+
Sbjct: 617  VSSVLLTKRDTFLDKDEFNQLLFSS 641


>XP_006588921.1 PREDICTED: DNA-directed RNA polymerase I subunit 1-like [Glycine max]
            KRH33046.1 hypothetical protein GLYMA_10G095200 [Glycine
            max]
          Length = 1651

 Score =  605 bits (1559), Expect = 0.0
 Identities = 335/686 (48%), Positives = 439/686 (63%), Gaps = 35/686 (5%)
 Frame = -3

Query: 2035 TKEIGAVHFTFYSDEEVRTTSVKSITSPILFDNLNRPAPEGLYDAALGPIDNHTSCVTCG 1856
            T  + AV F+F +D+E+R +S   ITSPIL D L  P P+GLYDAALGP D+ + C +CG
Sbjct: 9    TNSVEAVAFSFLTDDEIRRSSRVKITSPILVDFLLHPVPDGLYDAALGPFDDKSLCKSCG 68

Query: 1855 ESFLNCPGHCGHIELAMTVYNPLVFRHLLKFMNQMCTHCHHFKLTAEKLNDYADKLDEIR 1676
            ++  +CPGH GHIEL   VYNPL+F  L   + + C  CHHF+  +++++    +L+ I 
Sbjct: 69   QTSKHCPGHFGHIELVSPVYNPLMFNILSNILQRTCFTCHHFRAPSKEVDIRTSQLELIM 128

Query: 1675 KNNSVDSKFKSS--------------------SNEEQ-YS-------WTSFQLSEAREIL 1580
            K + + +K   S                     +E Q YS       WTS Q SEA  +L
Sbjct: 129  KGDIIRAKRLESIIPGKSVDSFNPDESIHPGDGDESQCYSAEQLGENWTSLQFSEAMSVL 188

Query: 1579 SSMISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVNANILKGLKSHRGTRRKD 1400
              ++++   +  KC  CG   PK++ P FG  HM+ LS  E  A+ ++ ++S      + 
Sbjct: 189  RKLLTK---KHKKCQKCGAKNPKISKPTFGWFHMNVLSADETRADTIRSVES------ET 239

Query: 1399 HSSEISANQTMGDNVTDLXXXXXXXXXXXXSLNGADMMVKNLMEKTESKFVKDRLLT--- 1229
             + +IS     G + TD+               G     K   EK   K  +   L+   
Sbjct: 240  TNDDISLG---GGDTTDVEDITSA---------GTAKRDKRKKEKLSYKLAEQNKLSGSL 287

Query: 1228 -PIEIKDHLRLLWENETRICCLMWDIQQEKKISWKQAPSYEMFFLQVLLVPPSRFRPPNK 1052
             P ++K  L LLWENE R+C  + DIQ +    + +   + MFFL+ + VPP +FRPP K
Sbjct: 288  LPSQVKGILELLWENEARLCSYINDIQDQ---GFGKKAGHSMFFLENIFVPPIKFRPPTK 344

Query: 1051 VGTSVLEHPQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNTA 872
             G +V+EHPQ +L +KVLQ NI++ +A     N+    +V +RW++LQ +VN++ D+ TA
Sbjct: 345  GGDNVMEHPQTVLLTKVLQCNISLGDA---HLNKSDPSKVLSRWMDLQQSVNMLFDNKTA 401

Query: 871  NTMKGKDVTGVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRL 692
            +  K    TG+ QLLEKKEG+FRQ MMGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRL
Sbjct: 402  SG-KRDVATGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRL 460

Query: 691  TYPEKVTPWNEEKLRQAIRNGPHVYPGATHFEDEQGMVDL---SKILPHQRNSIAKKLLS 521
            +YPE+VTPWN  KLR AI NGP  +PGATH+ D+  +V L    K+L    +  ++KL +
Sbjct: 461  SYPERVTPWNVVKLRNAILNGPESHPGATHYADKVSIVKLPPKGKLL----SLTSRKLPT 516

Query: 520  TRGVASSGTSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGEKT 341
            +RGV         I  ++ EGKVVYRHL+DGDV+LVNRQPTLHKPS+MAHI RVLKGEKT
Sbjct: 517  SRGVI---LHQGKISDHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHIVRVLKGEKT 573

Query: 340  LRMHYANCSAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDH 161
            +RMHYANCS YNADFDGDE+NVHFPQDEISRAEAY+IVNAN QY  PTSGDPIR LIQDH
Sbjct: 574  VRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDH 633

Query: 160  IVSATLLTKRDTFLSKEEYQNLVYSA 83
            IVSA LLTK+DTFLS EE+  L+YS+
Sbjct: 634  IVSAALLTKKDTFLSYEEFNQLLYSS 659


>EOY09356.1 Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score =  605 bits (1561), Expect = 0.0
 Identities = 334/688 (48%), Positives = 440/688 (63%), Gaps = 37/688 (5%)
 Frame = -3

Query: 2035 TKEIGAVHFTFYSDEEVRTTSVKSITSPILFDNLNRPAPEGLYDAALGPIDNHTSCVTCG 1856
            T  + AV F F + EEVR  S   +T+  L D ++RP P GLYDA LGP+++ T C +CG
Sbjct: 9    TDSVEAVRFNFMTTEEVRKHSFLKVTNANLLDLMDRPMPGGLYDAVLGPLEDRTPCKSCG 68

Query: 1855 ESFLNCPGHCGHIELAMTVYNPLVFRHLLKFMNQMCTHCHHFKLTAEKLNDYADKLDEIR 1676
               L+CPGHCGHI+L   +YNPL+F  L   + ++C  C+HF+    ++     +L  I 
Sbjct: 69   LLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLLQRICFFCYHFRAEKTEVERCVSQLKLIG 128

Query: 1675 KNNSVDSKFKSSSNEEQYS-------------------------WTSFQLSEAREILSSM 1571
              + V +K   S + +  S                         WTS QL EA  +L++ 
Sbjct: 129  NGDIVGAKRLDSDSADASSYSDYNEGSQESGSIVHNSEAVKPKEWTSLQLMEAMSVLNNF 188

Query: 1570 ISELKLQKNKCANCGLNTPKVTSPVFGRLHMSELSKKEVNANILKGLK-----SHRGTRR 1406
               LKL+ NKC NC    P +T PVFG LHM+ +   ++  N+++G K     S      
Sbjct: 189  ---LKLKYNKCKNCDAKNPNITKPVFGWLHMNGMLGAQMRENVIRGCKMVDTFSDEAGSG 245

Query: 1405 KDHSSEISANQTMGDNVTDLXXXXXXXXXXXXSLNGADMMVKNL---MEKTESKFVKDRL 1235
             + + ++S++   G+ V                 NGA    K     +E  + K +    
Sbjct: 246  LEDADDVSSS---GNGVDIAEMDTSEIGFTGSEGNGAKARKKKAQVPLEFMKQKNLFSGP 302

Query: 1234 LTPIEIKDHLRLLWENETRICCLMWDIQQEKKISWKQAPSYEMFFLQVLLVPPSRFRPPN 1055
            L P E+K   +LLWENE  +C ++ DIQQ+    + +   Y MFFL+ +LVPP +FR P 
Sbjct: 303  LLPSEVKKITKLLWENEVELCSIISDIQQQ---GFGKKVGYSMFFLETILVPPIKFRAPT 359

Query: 1054 KVGTSVLEHPQNILYSKVLQANIAVVEALKSGKNQGYVFQVTNRWLNLQDAVNVVIDSNT 875
            K G SV+EHPQ +L SKVLQANI++  A  +         V   W++LQ +VN++ DS T
Sbjct: 360  KGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSKA--VVRLWMDLQQSVNLLFDSKT 417

Query: 874  ANTMKGKDVT-GVRQLLEKKEGLFRQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFAL 698
            A + +G+DV+ G+ QLLEKKEG+FRQ MMGKRVN+ACRSVISPDPYLAVNEIGIPPYFAL
Sbjct: 418  AMS-QGRDVSSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFAL 476

Query: 697  RLTYPEKVTPWNEEKLRQAIRNGPHVYPGATHFEDEQGMVDLSKILPHQ--RNSIAKKLL 524
            RLTYPE+VTPWN  KLR+AI NG   +PGATH+ D+   +   ++ P Q  R SI++KL 
Sbjct: 477  RLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDK---LSTKRLPPSQKARISISRKLP 533

Query: 523  STRG-VASSGTSVENIDSNKVEGKVVYRHLQDGDVLLVNRQPTLHKPSMMAHIARVLKGE 347
            S+RG +A  G   +N+D  + EGK+V RHLQDGDV+LVNRQPTLHKPS+MAH+ RVLKGE
Sbjct: 534  SSRGAIAQPG---KNLDY-EFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 589

Query: 346  KTLRMHYANCSAYNADFDGDEMNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQ 167
            KT+RMHYANCS YNADFDGDE+NVHFPQDEISRAEAY+IVNAN QY  P++G+PIR LIQ
Sbjct: 590  KTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQ 649

Query: 166  DHIVSATLLTKRDTFLSKEEYQNLVYSA 83
            DHIVSA LLTKRDTFLS++E+  L+YS+
Sbjct: 650  DHIVSAVLLTKRDTFLSRDEFNQLLYSS 677