BLASTX nr result

ID: Ephedra29_contig00004998 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra29_contig00004998
         (1121 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BAJ78675.1 RNA polymerase II largest subunit, partial [Metylopho...    80   2e-12
KZS06240.1 DNA-directed RNA polymerase [Daphnia magna]                 78   3e-12
ELU15060.1 hypothetical protein CAPTEDRAFT_170227 [Capitella tel...    79   5e-12
XP_013419697.1 PREDICTED: DNA-directed RNA polymerase II subunit...    78   7e-12
XP_013401160.1 PREDICTED: DNA-directed RNA polymerase II subunit...    78   7e-12
BAJ52637.1 RNA polymerase II largest subunit, partial [Monosiga ...    78   8e-12
BAJ78650.1 RNA polymerase II largest subunit, partial [Isolepism...    78   9e-12
AAB24966.1 RNA polymerase II largest subunit, partial [Dictyoste...    77   1e-11
JAN55945.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ...    77   1e-11
XP_641735.1 RNA polymerase II largest subunit [Dictyostelium dis...    77   2e-11
BAO20842.1 RNA polymerase II largest subunit, partial [Daphnia p...    77   2e-11
JAN50643.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ...    77   2e-11
JAN64786.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ...    77   2e-11
JAN53042.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ...    77   2e-11
JAN42539.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ...    77   2e-11
EFX75312.1 hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex]      77   2e-11
XP_014221062.1 PREDICTED: DNA-directed RNA polymerase II subunit...    77   2e-11
JAN40900.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ...    77   2e-11
JAN74022.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ...    77   2e-11
JAN55944.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ...    77   2e-11

>BAJ78675.1 RNA polymerase II largest subunit, partial [Metylophorus sp. E-43]
          Length = 1792

 Score = 80.1 bits (196), Expect = 2e-12
 Identities = 61/180 (33%), Positives = 80/180 (44%), Gaps = 12/180 (6%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SPT A T+P M P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1592 SPTYAPTSPSMSPASPNYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSP----- 1646

Query: 946  XXXXSVTAPS---VSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTA 785
                  T+PS    SP Y    PS S T+PS   T+PSY   +PS + T+PSY P +P+ 
Sbjct: 1647 ------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1700

Query: 784  SVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            S  +P+  P   PS    S S                 ++P Y  +SPSY  + P+ SPS
Sbjct: 1701 SPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPQSPSYSPTSPSYSPS 1759



 Score = 73.2 bits (178), Expect = 3e-10
 Identities = 55/177 (31%), Positives = 79/177 (44%), Gaps = 9/177 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + T+P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1613 SPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1672

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
                   +P+ SP Y    PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  
Sbjct: 1673 SPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1731

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +P+  P +   +PQ      T            PA +P+Y   SP Y  + P+ SP+
Sbjct: 1732 SPSYSPSSPNYTPQSPSYSPTSPSYSPSSPRYSPA-SPSYSPSSPKYSPTSPSYSPT 1787



 Score = 72.8 bits (177), Expect = 4e-10
 Identities = 55/167 (32%), Positives = 76/167 (45%), Gaps = 9/167 (5%)
 Frame = -2

Query: 1078 MPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPS--- 917
            + P ++  SPT A T+P+M P    Y P++P  S T                 T+PS   
Sbjct: 1584 LSPSYSPSSPTYAPTSPSMSPASPNYSPTSPSYSPTSPNYSP-----------TSPSYSP 1632

Query: 916  VSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKP 746
             SP Y    PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  +P+  P   P
Sbjct: 1633 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSP 1691

Query: 745  SSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            S    S S                  +P+Y   SPSY  + P+ SPS
Sbjct: 1692 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPS 1738



 Score = 68.9 bits (167), Expect = 6e-09
 Identities = 53/171 (30%), Positives = 76/171 (44%), Gaps = 12/171 (7%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + T+P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1627 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1686

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
                   +P+ SP Y    PS S T+PS   T+PSY   +PS + T+PSY P +P  +  
Sbjct: 1687 SPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPQ 1745

Query: 775  TPTMPPFN---KPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYP 632
            +P+  P +    PSSP+ S +  +               +P+Y   SPSYP
Sbjct: 1746 SPSYSPTSPSYSPSSPRYSPASPSYSPSSPKYSP----TSPSYSPTSPSYP 1792


>KZS06240.1 DNA-directed RNA polymerase [Daphnia magna]
          Length = 436

 Score = 78.2 bits (191), Expect = 3e-12
 Identities = 56/168 (33%), Positives = 77/168 (45%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929
            SP  A T+P+M P     SPT    +PT P  Y P++P  S T                 
Sbjct: 129  SPAYAPTSPLMTPSSPSYSPTSPSYSPTSPN-YSPTSPGYSPTSPSYSP----------- 176

Query: 928  TAPSVSPMYKSGLPSKSNTAPSTTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNK 749
            T+PS SP   S  P+    +P T+PSY   +PS + T+PSY P +PT S  +P+  P + 
Sbjct: 177  TSPSYSPTSPSYSPTSPTYSP-TSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSP-SS 234

Query: 748  PSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            PS    S S                 ++P+Y   SPSY  + P+ SPS
Sbjct: 235  PSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 282



 Score = 73.2 bits (178), Expect = 1e-10
 Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP  + T+P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 157  SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 216

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
                   +PS SP Y    PS S T+PS   T+PSY   +PS + ++PSY P +P+ S  
Sbjct: 217  SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 273

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608
             PT P ++ PSSPQ S                    +PAY   SP Y  + P+ SP
Sbjct: 274  -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 309



 Score = 68.9 bits (167), Expect = 3e-09
 Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SPT + T+P   P     SPT    +PT P      P Y PS+P  S T           
Sbjct: 192  SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 251

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800
                   +PS SP Y    PS S T+PS +PS          Y   +P  + T+PSY P 
Sbjct: 252  SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 310

Query: 799  ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629
                TP +   +PT P ++ P+SP  S S                  +P Y   SPSY  
Sbjct: 311  SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 365

Query: 628  SVPAMSPS 605
            + PA SPS
Sbjct: 366  ASPAYSPS 373



 Score = 60.8 bits (146), Expect = 1e-06
 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + ++P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 227  SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 286

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776
                   +PS SP Y    PS S  +P  TP+   Y   +P+ + T+P+Y P +P  S  
Sbjct: 287  SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 345

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +P   P +   SP  S S                  +P+Y   SP Y  + P  SP+
Sbjct: 346  SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 401



 Score = 59.7 bits (143), Expect = 3e-06
 Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 7/165 (4%)
 Frame = -2

Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899
            M P     SP+ A  A  + P Y P+     ++                + +P +SP Y 
Sbjct: 72   MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 126

Query: 898  SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740
               P+ + T+P  T   PSY   +PS + T+P+Y P     +PT+   +PT P ++ P+S
Sbjct: 127  PSSPAYAPTSPLMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 185

Query: 739  PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            P  S +  T               +P+Y   SPSY  + P  SPS
Sbjct: 186  PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 226


>ELU15060.1 hypothetical protein CAPTEDRAFT_170227 [Capitella teleta]
          Length = 1916

 Score = 78.6 bits (192), Expect = 5e-12
 Identities = 57/177 (32%), Positives = 80/177 (45%), Gaps = 9/177 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + T+P  PP     SPT    +PT P      P Y P++P  S T           
Sbjct: 1584 SPSYSPTSPSYPPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1643

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
                   +P+ SP Y    PS S T+PS   T+PSY   +PS + T+P+Y P +P+ S  
Sbjct: 1644 SPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPT 1702

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +P+  P +   SPQ S S                  +P+Y   SPSY  + P+ SPS
Sbjct: 1703 SPSYSPTSPNYSPQ-SPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPTSPSYSPS 1758



 Score = 74.3 bits (181), Expect = 1e-10
 Identities = 57/180 (31%), Positives = 80/180 (44%), Gaps = 12/180 (6%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + T+P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1598 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1657

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
                   +P+ SP Y    PS S T+PS   T+P+Y   +PS + T+PSY P +P  S  
Sbjct: 1658 SPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPNYSPQ 1716

Query: 775  TPTMPPFN---KPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +P+  P +    PSSP+ S +  +               +P+Y   SPSY  S P  SPS
Sbjct: 1717 SPSYSPTSPSYSPSSPKYSPTSPS-----------YSPTSPSYSPTSPSYSPSSPQYSPS 1765



 Score = 72.8 bits (177), Expect = 4e-10
 Identities = 58/177 (32%), Positives = 80/177 (45%), Gaps = 9/177 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + T+P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1640 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSY 1699

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776
                   +P+ SP Y    PS S T+PS +PS   Y   +PS + T+PSY P +P+ S  
Sbjct: 1700 SPTSPSYSPT-SPNYSPQSPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPTSPSYS-- 1756

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
             P+ P ++ PSSPQ S +                +N+P Y   SP Y  S P+ SPS
Sbjct: 1757 -PSSPQYS-PSSPQYSPA----------------SNSPQYTPASPHYSPSSPSYSPS 1795



 Score = 60.8 bits (146), Expect = 2e-06
 Identities = 50/183 (27%), Positives = 74/183 (40%), Gaps = 15/183 (8%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + T+P   P     SPT    +PT P      P Y PS+P   ++           
Sbjct: 1717 SPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPTSPSYSPSSP--QYSPSSPQYSPASN 1774

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS------TTPSYKSVAPSKAVTAPSYKPLTPTA 785
                +  +P  SP   S  PS    +PS      T+P Y   +P  + ++P Y P +P  
Sbjct: 1775 SPQYTPASPHYSPSSPSYSPSSPQYSPSSPSYTPTSPKYSPSSPDYSPSSPQYSPASPQY 1834

Query: 784  SVMTPTMPPFN---KPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAM 614
            S  +P   P +    PSSPQ S +  +               +P+Y   SP Y  + PA 
Sbjct: 1835 SPGSPDYSPNSPSYSPSSPQYSPASPSYSPTSPKYSP----ESPSYSPSSPKYSPTSPAY 1890

Query: 613  SPS 605
            SP+
Sbjct: 1891 SPT 1893



 Score = 60.5 bits (145), Expect = 3e-06
 Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 14/182 (7%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPF-HNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXS 932
            SP+  + +P M P+ H+  +P     A +  P Y PS+P                    S
Sbjct: 1503 SPSSNMGSPQMTPWGHDQSTPIPVGGANS--PSYSPSSPSFMPASPATPHSPAYSPQSYS 1560

Query: 931  VTAPSVSPM---YKSGLPSKSNTAPS----------TTPSYKSVAPSKAVTAPSYKPLTP 791
              +PS SP    Y    P+ S T+PS          T+PSY   +PS + T+PSY P +P
Sbjct: 1561 PASPSYSPGSAGYSPSSPNFSPTSPSYSPTSPSYPPTSPSYSPTSPSYSPTSPSYSPTSP 1620

Query: 790  TASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMS 611
            + S  +P+  P   PS    S S                  +P+Y   SPSY  + P+ S
Sbjct: 1621 SYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1679

Query: 610  PS 605
            P+
Sbjct: 1680 PT 1681


>XP_013419697.1 PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X1 [Lingula anatina] XP_013419698.1 PREDICTED:
            DNA-directed RNA polymerase II subunit RPB1-like isoform
            X2 [Lingula anatina]
          Length = 1939

 Score = 78.2 bits (191), Expect = 7e-12
 Identities = 58/175 (33%), Positives = 78/175 (44%), Gaps = 3/175 (1%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929
            SPT + T+P   P     SPT    +PT P  Y P++P  S T                 
Sbjct: 1619 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1677

Query: 928  TAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPP 758
             +P+ SP Y    PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  +P+  P
Sbjct: 1678 YSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1736

Query: 757  FNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSDFPF 593
               PS    S S                 ++P+Y   SPSY  S P+ SPS   F
Sbjct: 1737 -TSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPTSPSYSPSSPSYSPSSPKF 1790



 Score = 74.3 bits (181), Expect = 1e-10
 Identities = 57/174 (32%), Positives = 77/174 (44%), Gaps = 6/174 (3%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929
            SP+ + T+P   P     SPT    +PT P  Y P++P  S T                 
Sbjct: 1598 SPSYSPTSPSYSPSSPGYSPTSPTYSPTSPS-YSPTSPSYSPTSPSYSP----------- 1645

Query: 928  TAPS---VSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPT 767
            T+PS    SP Y    PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  +P+
Sbjct: 1646 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705

Query: 766  MPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
              P   PS    S S                  +P+Y   SPSY  + P+ SPS
Sbjct: 1706 YSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPS 1758



 Score = 67.8 bits (164), Expect = 2e-08
 Identities = 57/188 (30%), Positives = 76/188 (40%), Gaps = 20/188 (10%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + T+P   P     SPT    +PT P      P Y PS+P  S T           
Sbjct: 1724 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPTSPSYSPSSPSY 1783

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS----------TTPSYKSVAPSKAVTAPSYKPL 797
                   +P+ SP Y    PS S ++P           T+P Y   +PS + T+P Y P 
Sbjct: 1784 SPSSPKFSPA-SPSYSPTSPSYSPSSPQYSPSSPQYTPTSPKYSPTSPSYSPTSPKYSPA 1842

Query: 796  ----TPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629
                TPT+   TPT P ++ PSSPQ S S                  +P Y   SP Y  
Sbjct: 1843 SPTYTPTSPKYTPTSPEYS-PSSPQYSPSSPKYSPA-----------SPTYSPTSPKYSP 1890

Query: 628  SVPAMSPS 605
            + P  SP+
Sbjct: 1891 ASPTYSPT 1898



 Score = 67.4 bits (163), Expect = 2e-08
 Identities = 54/177 (30%), Positives = 76/177 (42%), Gaps = 9/177 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + T+P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1689 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1748

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPSYKSVAPSKAVTAPSYKPLTPTASVMTPT 767
                   +PS SP Y    PS S T+PS +PS  S +PS    +P+    +PT+   +P+
Sbjct: 1749 SPTSPSYSPS-SPSYSPSSPSYSPTSPSYSPSSPSYSPSSPKFSPASPSYSPTSPSYSPS 1807

Query: 766  MPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPA---YVTKSPSYPSSVPAMSPS 605
             P ++ PSSPQ + +               P  +PA   Y   SP Y  + P  SPS
Sbjct: 1808 SPQYS-PSSPQYTPTSPKYSPTSPSYSPTSPKYSPASPTYTPTSPKYTPTSPEYSPS 1863



 Score = 59.7 bits (143), Expect = 6e-06
 Identities = 46/169 (27%), Positives = 69/169 (40%)
 Frame = -2

Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXS 932
            +SP     A  M P ++  SP+   ++P M P     +P                     
Sbjct: 1565 ISPYIPSPAGAMSPSYSPASPSYIPSSPAMTPQSPSYSP--------------------- 1603

Query: 931  VTAPSVSPMYKSGLPSKSNTAPSTTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFN 752
             T+PS SP      P+    +P T+PSY   +PS + T+PSY P +P+ S  +P+  P  
Sbjct: 1604 -TSPSYSPSSPGYSPTSPTYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-T 1660

Query: 751  KPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
             PS    S S                  +P+Y   SPSY  + P+ SP+
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1709


>XP_013401160.1 PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Lingula
            anatina]
          Length = 1939

 Score = 78.2 bits (191), Expect = 7e-12
 Identities = 58/175 (33%), Positives = 78/175 (44%), Gaps = 3/175 (1%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929
            SPT + T+P   P     SPT    +PT P  Y P++P  S T                 
Sbjct: 1619 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1677

Query: 928  TAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPP 758
             +P+ SP Y    PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  +P+  P
Sbjct: 1678 YSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1736

Query: 757  FNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSDFPF 593
               PS    S S                 ++P+Y   SPSY  S P+ SPS   F
Sbjct: 1737 -TSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPTSPSYSPSSPSYSPSSPKF 1790



 Score = 74.3 bits (181), Expect = 1e-10
 Identities = 57/174 (32%), Positives = 77/174 (44%), Gaps = 6/174 (3%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929
            SP+ + T+P   P     SPT    +PT P  Y P++P  S T                 
Sbjct: 1598 SPSYSPTSPSYSPSSPGYSPTSPTYSPTSPS-YSPTSPSYSPTSPSYSP----------- 1645

Query: 928  TAPS---VSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPT 767
            T+PS    SP Y    PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  +P+
Sbjct: 1646 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705

Query: 766  MPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
              P   PS    S S                  +P+Y   SPSY  + P+ SPS
Sbjct: 1706 YSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPS 1758



 Score = 67.8 bits (164), Expect = 2e-08
 Identities = 57/188 (30%), Positives = 76/188 (40%), Gaps = 20/188 (10%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + T+P   P     SPT    +PT P      P Y PS+P  S T           
Sbjct: 1724 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPTSPSYSPSSPSY 1783

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS----------TTPSYKSVAPSKAVTAPSYKPL 797
                   +P+ SP Y    PS S ++P           T+P Y   +PS + T+P Y P 
Sbjct: 1784 SPSSPKFSPA-SPSYSPTSPSYSPSSPQYSPSSPQYTPTSPKYSPTSPSYSPTSPKYSPA 1842

Query: 796  ----TPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629
                TPT+   TPT P ++ PSSPQ S S                  +P Y   SP Y  
Sbjct: 1843 SPTYTPTSPKYTPTSPEYS-PSSPQYSPSSPKYSPA-----------SPTYSPTSPKYSP 1890

Query: 628  SVPAMSPS 605
            + P  SP+
Sbjct: 1891 ASPTYSPT 1898



 Score = 67.4 bits (163), Expect = 2e-08
 Identities = 54/177 (30%), Positives = 76/177 (42%), Gaps = 9/177 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + T+P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1689 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1748

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPSYKSVAPSKAVTAPSYKPLTPTASVMTPT 767
                   +PS SP Y    PS S T+PS +PS  S +PS    +P+    +PT+   +P+
Sbjct: 1749 SPTSPSYSPS-SPSYSPSSPSYSPTSPSYSPSSPSYSPSSPKFSPASPSYSPTSPSYSPS 1807

Query: 766  MPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPA---YVTKSPSYPSSVPAMSPS 605
             P ++ PSSPQ + +               P  +PA   Y   SP Y  + P  SPS
Sbjct: 1808 SPQYS-PSSPQYTPTSPKYSPTSPSYSPTSPKYSPASPTYTPTSPKYTPTSPEYSPS 1863



 Score = 59.7 bits (143), Expect = 6e-06
 Identities = 46/169 (27%), Positives = 69/169 (40%)
 Frame = -2

Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXS 932
            +SP     A  M P ++  SP+   ++P M P     +P                     
Sbjct: 1565 ISPYIPSPAGAMSPSYSPASPSYIPSSPAMTPQSPSYSP--------------------- 1603

Query: 931  VTAPSVSPMYKSGLPSKSNTAPSTTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFN 752
             T+PS SP      P+    +P T+PSY   +PS + T+PSY P +P+ S  +P+  P  
Sbjct: 1604 -TSPSYSPSSPGYSPTSPTYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-T 1660

Query: 751  KPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
             PS    S S                  +P+Y   SPSY  + P+ SP+
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1709


>BAJ52637.1 RNA polymerase II largest subunit, partial [Monosiga ovata]
          Length = 1289

 Score = 77.8 bits (190), Expect = 8e-12
 Identities = 59/182 (32%), Positives = 79/182 (43%), Gaps = 9/182 (4%)
 Frame = -2

Query: 1114 YMSPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXX 953
            +MSPT    +P  P +    SPT    +PT P      P Y P++P  S T         
Sbjct: 1105 HMSPTSPKYSPTSPSY----SPTSPSYSPTSPKYSPTSPSYSPTSPSYSPTSPKYSPTSP 1160

Query: 952  XXXXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTAS 782
                     +P+ SP Y    PS S T+PS   T+PSY   +PS + T+PSY P +P+ S
Sbjct: 1161 SYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1219

Query: 781  VMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSD 602
              +P+  P   PS    S S                 ++P Y   SPSY  S P+ SPS 
Sbjct: 1220 PTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYSPSSPSYSPSSPSYSPSS 1278

Query: 601  FP 596
             P
Sbjct: 1279 GP 1280



 Score = 63.2 bits (152), Expect = 4e-07
 Identities = 45/139 (32%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + T+P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1145 SPSYSPTSPKYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1204

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
                   +P+ SP Y    PS S T+PS   T+PSY   +PS + T+PSY P +P  S  
Sbjct: 1205 SPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYSPS 1263

Query: 775  TPTMPPFNKPSSPQKSMSQ 719
            +P+  P +   SP     Q
Sbjct: 1264 SPSYSPSSPSYSPSSGPGQ 1282


>BAJ78650.1 RNA polymerase II largest subunit, partial [Isolepisma japonica]
          Length = 1775

 Score = 77.8 bits (190), Expect = 9e-12
 Identities = 57/171 (33%), Positives = 76/171 (44%), Gaps = 3/171 (1%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929
            SP  A T+P M P     SPT    +PT P  Y P++P  S T                 
Sbjct: 1590 SPAYAPTSPSMTPASPNYSPTSPSYSPTSPK-YSPASPSYSPTSPSYSPTSPSYSPTSPS 1648

Query: 928  TAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPP 758
             +P+ SP Y    PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  +P+  P
Sbjct: 1649 YSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1707

Query: 757  FNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
               PS    S S                 ++P Y   SPSY  + P+ SPS
Sbjct: 1708 -TSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPASPSYSPTSPSYSPS 1757



 Score = 66.6 bits (161), Expect = 4e-08
 Identities = 54/174 (31%), Positives = 78/174 (44%), Gaps = 6/174 (3%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXXX 938
            SP     A  M P ++  SP  A T+P+M P    Y P++P  S T              
Sbjct: 1572 SPYVPSPAAGMSPSYSPSSPAYAPTSPSMTPASPNYSPTSPSYSPT-------------- 1617

Query: 937  XSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPT 767
                    SP Y    PS S T+PS   T+PSY   +PS + T+PSY P +P+    +PT
Sbjct: 1618 --------SPKYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS---YSPT 1666

Query: 766  MPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
             P ++ P+SP  S +  +               +P+Y   SPSY  + P+ SP+
Sbjct: 1667 SPSYS-PTSPSYSPTSPS-----------YSPTSPSYSPTSPSYSPTSPSYSPT 1708



 Score = 63.2 bits (152), Expect = 5e-07
 Identities = 52/167 (31%), Positives = 74/167 (44%), Gaps = 9/167 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + T+P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1632 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1691

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
                   +P+ SP Y    PS S T+PS   T+PSY   +PS + ++P+Y P +P+ S  
Sbjct: 1692 SPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPASPSYS-- 1748

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSY 635
             PT P ++ PSSPQ S +                  +P+Y   SP Y
Sbjct: 1749 -PTSPSYS-PSSPQYSPA------------------SPSYSPSSPKY 1775


>AAB24966.1 RNA polymerase II largest subunit, partial [Dictyostelium discoideum]
          Length = 902

 Score = 77.0 bits (188), Expect = 1e-11
 Identities = 57/175 (32%), Positives = 78/175 (44%), Gaps = 3/175 (1%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929
            SPT + T+P   P     SPT    +PT P  Y P++P  S T                 
Sbjct: 725  SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPFYSPTSPS 783

Query: 928  TAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPP 758
             +P+ SP Y    PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  +P+  P
Sbjct: 784  YSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 842

Query: 757  FNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSDFPF 593
             +   SP       T              ++P+Y   SPSY  S P+ SPS   F
Sbjct: 843  TSPSYSPTSPSYSPTSPSYSP--------SSPSYSPSSPSYSPSSPSYSPSSPTF 889


>JAN55945.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna]
          Length = 1273

 Score = 77.0 bits (188), Expect = 1e-11
 Identities = 56/168 (33%), Positives = 76/168 (45%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929
            SP  A T+P M P     SPT    +PT P  Y P++P  S T                 
Sbjct: 966  SPAYAPTSPSMTPSSPSYSPTSPSYSPTSPN-YSPTSPGYSPTSPSYSP----------- 1013

Query: 928  TAPSVSPMYKSGLPSKSNTAPSTTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNK 749
            T+PS SP   S  P+    +P T+PSY   +PS + T+PSY P +PT S  +P+  P + 
Sbjct: 1014 TSPSYSPTSPSYSPTSPTDSP-TSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSP-SS 1071

Query: 748  PSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            PS    S S                 ++P+Y   SPSY  + P+ SPS
Sbjct: 1072 PSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1119



 Score = 70.9 bits (172), Expect = 1e-09
 Identities = 58/176 (32%), Positives = 78/176 (44%), Gaps = 9/176 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + T+P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1008 SPSYSPTSPSYSPTSPSYSPTSPTDSPTSPSYSPTSPSYSPTSPSYSPTSPTY------- 1060

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
                   +PS SP Y    PS S T+PS   T+PSY   +PS + ++PSY P +P+ S  
Sbjct: 1061 -------SPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1110

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608
             PT P ++ PSSPQ S                    +PAY   SP Y  + P+ SP
Sbjct: 1111 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1146



 Score = 69.3 bits (168), Expect = 5e-09
 Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SPT + T+P   P     SPT    +PT P      P Y PS+P  S T           
Sbjct: 1029 SPTDSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1088

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800
                   +PS SP Y    PS S T+PS +PS          Y   +P  + T+PSY P 
Sbjct: 1089 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1147

Query: 799  ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629
                TP +   +PT P ++ P+SP  S S                  +P Y   SPSY  
Sbjct: 1148 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1202

Query: 628  SVPAMSPS 605
            + PA SPS
Sbjct: 1203 ASPAYSPS 1210



 Score = 62.0 bits (149), Expect = 1e-06
 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%)
 Frame = -2

Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899
            M P     SP+ A  A  + P Y P+     ++                + +P +SP Y 
Sbjct: 909  MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 963

Query: 898  SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740
               P+ + T+PS T   PSY   +PS + T+P+Y P     +PT+   +PT P ++ P+S
Sbjct: 964  PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1022

Query: 739  PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            P  S +  T               +P+Y   SPSY  + P  SPS
Sbjct: 1023 PSYSPTSPT----DSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1063



 Score = 60.8 bits (146), Expect = 2e-06
 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + ++P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1064 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1123

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776
                   +PS SP Y    PS S  +P  TP+   Y   +P+ + T+P+Y P +P  S  
Sbjct: 1124 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1182

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +P   P +   SP  S S                  +P+Y   SP Y  + P  SP+
Sbjct: 1183 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1238


>XP_641735.1 RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
            P35084.2 RecName: Full=DNA-directed RNA polymerase II
            subunit rpb1; Short=RNA polymerase II subunit B1;
            AltName: Full=DNA-directed RNA polymerase III subunit A
            EAL67745.1 RNA polymerase II largest subunit
            [Dictyostelium discoideum AX4]
          Length = 1727

 Score = 77.0 bits (188), Expect = 2e-11
 Identities = 57/175 (32%), Positives = 78/175 (44%), Gaps = 3/175 (1%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929
            SPT + T+P   P     SPT    +PT P  Y P++P  S T                 
Sbjct: 1550 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPFYSPTSPS 1608

Query: 928  TAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPP 758
             +P+ SP Y    PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  +P+  P
Sbjct: 1609 YSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1667

Query: 757  FNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSDFPF 593
             +   SP       T              ++P+Y   SPSY  S P+ SPS   F
Sbjct: 1668 TSPSYSPTSPSYSPTSPSYSP--------SSPSYSPSSPSYSPSSPSYSPSSPTF 1714


>BAO20842.1 RNA polymerase II largest subunit, partial [Daphnia pulicaria]
          Length = 1764

 Score = 77.0 bits (188), Expect = 2e-11
 Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%)
 Frame = -2

Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941
            MSP   + +P M P ++  SP  A T+P+M P    Y P++P  S T             
Sbjct: 1549 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1606

Query: 940  XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770
                 +P+ SP Y    PS S T+P+   T+PSY   +PS + T+PSY P +PT S  +P
Sbjct: 1607 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1665

Query: 769  TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +  P + PS    S S                 ++P+Y   SPSY  + P+ SPS
Sbjct: 1666 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1719



 Score = 73.6 bits (179), Expect = 2e-10
 Identities = 55/177 (31%), Positives = 77/177 (43%), Gaps = 9/177 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP  A T+P M P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1566 SPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSY 1625

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
                   +P+ SP Y    PS S T+PS   T+P+Y   +PS + ++PSY P +P+ S  
Sbjct: 1626 SPTSPTYSPT-SPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPT 1684

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +P+  P   PS    S S                 ++P Y  +SP+Y  S P  SP+
Sbjct: 1685 SPSYSP-TSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPT 1740



 Score = 73.2 bits (178), Expect = 3e-10
 Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP  + T+P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1594 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1653

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
                   +PS SP Y    PS S T+PS   T+PSY   +PS + ++PSY P +P+ S  
Sbjct: 1654 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1710

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608
             PT P ++ PSSPQ S                    +PAY   SP Y  + P+ SP
Sbjct: 1711 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1746



 Score = 62.0 bits (149), Expect = 1e-06
 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%)
 Frame = -2

Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899
            M P     SP+ A  A  + P Y P+     ++                + +P +SP Y 
Sbjct: 1509 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 1563

Query: 898  SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740
               P+ + T+PS T   PSY   +PS + T+P+Y P     +PT+   +PT P ++ P+S
Sbjct: 1564 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1622

Query: 739  PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            P  S +  T               +P+Y   SPSY  + P  SPS
Sbjct: 1623 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1663


>JAN50643.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna]
          Length = 1865

 Score = 77.0 bits (188), Expect = 2e-11
 Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%)
 Frame = -2

Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941
            MSP   + +P M P ++  SP  A T+P+M P    Y P++P  S T             
Sbjct: 1541 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1598

Query: 940  XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770
                 +P+ SP Y    PS S T+P+   T+PSY   +PS + T+PSY P +PT S  +P
Sbjct: 1599 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1657

Query: 769  TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +  P + PS    S S                 ++P+Y   SPSY  + P+ SPS
Sbjct: 1658 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1711



 Score = 73.2 bits (178), Expect = 3e-10
 Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP  + T+P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1586 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1645

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
                   +PS SP Y    PS S T+PS   T+PSY   +PS + ++PSY P +P+ S  
Sbjct: 1646 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1702

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608
             PT P ++ PSSPQ S                    +PAY   SP Y  + P+ SP
Sbjct: 1703 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1738



 Score = 68.9 bits (167), Expect = 6e-09
 Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SPT + T+P   P     SPT    +PT P      P Y PS+P  S T           
Sbjct: 1621 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1680

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800
                   +PS SP Y    PS S T+PS +PS          Y   +P  + T+PSY P 
Sbjct: 1681 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1739

Query: 799  ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629
                TP +   +PT P ++ P+SP  S S                  +P Y   SPSY  
Sbjct: 1740 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1794

Query: 628  SVPAMSPS 605
            + PA SPS
Sbjct: 1795 ASPAYSPS 1802



 Score = 62.0 bits (149), Expect = 1e-06
 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%)
 Frame = -2

Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899
            M P     SP+ A  A  + P Y P+     ++                + +P +SP Y 
Sbjct: 1501 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 1555

Query: 898  SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740
               P+ + T+PS T   PSY   +PS + T+P+Y P     +PT+   +PT P ++ P+S
Sbjct: 1556 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1614

Query: 739  PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            P  S +  T               +P+Y   SPSY  + P  SPS
Sbjct: 1615 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1655



 Score = 60.8 bits (146), Expect = 2e-06
 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + ++P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1656 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1715

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776
                   +PS SP Y    PS S  +P  TP+   Y   +P+ + T+P+Y P +P  S  
Sbjct: 1716 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1774

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +P   P +   SP  S S                  +P+Y   SP Y  + P  SP+
Sbjct: 1775 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1830


>JAN64786.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna]
          Length = 1895

 Score = 77.0 bits (188), Expect = 2e-11
 Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%)
 Frame = -2

Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941
            MSP   + +P M P ++  SP  A T+P+M P    Y P++P  S T             
Sbjct: 1571 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1628

Query: 940  XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770
                 +P+ SP Y    PS S T+P+   T+PSY   +PS + T+PSY P +PT S  +P
Sbjct: 1629 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1687

Query: 769  TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +  P + PS    S S                 ++P+Y   SPSY  + P+ SPS
Sbjct: 1688 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1741



 Score = 73.2 bits (178), Expect = 3e-10
 Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP  + T+P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1616 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1675

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
                   +PS SP Y    PS S T+PS   T+PSY   +PS + ++PSY P +P+ S  
Sbjct: 1676 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1732

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608
             PT P ++ PSSPQ S                    +PAY   SP Y  + P+ SP
Sbjct: 1733 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1768



 Score = 68.9 bits (167), Expect = 6e-09
 Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SPT + T+P   P     SPT    +PT P      P Y PS+P  S T           
Sbjct: 1651 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1710

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800
                   +PS SP Y    PS S T+PS +PS          Y   +P  + T+PSY P 
Sbjct: 1711 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1769

Query: 799  ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629
                TP +   +PT P ++ P+SP  S S                  +P Y   SPSY  
Sbjct: 1770 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1824

Query: 628  SVPAMSPS 605
            + PA SPS
Sbjct: 1825 ASPAYSPS 1832



 Score = 62.0 bits (149), Expect = 1e-06
 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%)
 Frame = -2

Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899
            M P     SP+ A  A  + P Y P+     ++                + +P +SP Y 
Sbjct: 1531 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 1585

Query: 898  SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740
               P+ + T+PS T   PSY   +PS + T+P+Y P     +PT+   +PT P ++ P+S
Sbjct: 1586 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1644

Query: 739  PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            P  S +  T               +P+Y   SPSY  + P  SPS
Sbjct: 1645 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1685



 Score = 60.8 bits (146), Expect = 2e-06
 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + ++P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1686 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1745

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776
                   +PS SP Y    PS S  +P  TP+   Y   +P+ + T+P+Y P +P  S  
Sbjct: 1746 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1804

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +P   P +   SP  S S                  +P+Y   SP Y  + P  SP+
Sbjct: 1805 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1860


>JAN53042.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna]
            JAN53043.1 DNA-directed RNA polymerase II subunit RPB1
            [Daphnia magna]
          Length = 1895

 Score = 77.0 bits (188), Expect = 2e-11
 Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%)
 Frame = -2

Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941
            MSP   + +P M P ++  SP  A T+P+M P    Y P++P  S T             
Sbjct: 1571 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1628

Query: 940  XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770
                 +P+ SP Y    PS S T+P+   T+PSY   +PS + T+PSY P +PT S  +P
Sbjct: 1629 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1687

Query: 769  TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +  P + PS    S S                 ++P+Y   SPSY  + P+ SPS
Sbjct: 1688 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1741



 Score = 73.2 bits (178), Expect = 3e-10
 Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP  + T+P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1616 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1675

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
                   +PS SP Y    PS S T+PS   T+PSY   +PS + ++PSY P +P+ S  
Sbjct: 1676 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1732

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608
             PT P ++ PSSPQ S                    +PAY   SP Y  + P+ SP
Sbjct: 1733 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1768



 Score = 68.9 bits (167), Expect = 6e-09
 Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SPT + T+P   P     SPT    +PT P      P Y PS+P  S T           
Sbjct: 1651 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1710

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800
                   +PS SP Y    PS S T+PS +PS          Y   +P  + T+PSY P 
Sbjct: 1711 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1769

Query: 799  ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629
                TP +   +PT P ++ P+SP  S S                  +P Y   SPSY  
Sbjct: 1770 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1824

Query: 628  SVPAMSPS 605
            + PA SPS
Sbjct: 1825 ASPAYSPS 1832



 Score = 61.2 bits (147), Expect = 2e-06
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 7/157 (4%)
 Frame = -2

Query: 1054 SPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSN 875
            SP+ A  A  + P Y P+     ++                + +P +SP Y    P+ + 
Sbjct: 1539 SPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYSPSSPAYAP 1593

Query: 874  TAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSSPQKSMSQE 716
            T+PS T   PSY   +PS + T+P+Y P     +PT+   +PT P ++ P+SP  S +  
Sbjct: 1594 TSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTSPSYSPTSP 1652

Query: 715  TXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            T               +P+Y   SPSY  + P  SPS
Sbjct: 1653 T----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1685



 Score = 60.8 bits (146), Expect = 2e-06
 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + ++P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1686 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1745

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776
                   +PS SP Y    PS S  +P  TP+   Y   +P+ + T+P+Y P +P  S  
Sbjct: 1746 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1804

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +P   P +   SP  S S                  +P+Y   SP Y  + P  SP+
Sbjct: 1805 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1860


>JAN42539.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna]
            JAN44046.1 DNA-directed RNA polymerase II subunit RPB1
            [Daphnia magna] JAN45443.1 DNA-directed RNA polymerase II
            subunit RPB1 [Daphnia magna] JAN46894.1 DNA-directed RNA
            polymerase II subunit RPB1 [Daphnia magna] JAN46895.1
            DNA-directed RNA polymerase II subunit RPB1 [Daphnia
            magna] JAN48591.1 DNA-directed RNA polymerase II subunit
            RPB1 [Daphnia magna] JAN48592.1 DNA-directed RNA
            polymerase II subunit RPB1 [Daphnia magna] JAN62288.1
            DNA-directed RNA polymerase II subunit RPB1 [Daphnia
            magna]
          Length = 1895

 Score = 77.0 bits (188), Expect = 2e-11
 Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%)
 Frame = -2

Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941
            MSP   + +P M P ++  SP  A T+P+M P    Y P++P  S T             
Sbjct: 1571 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1628

Query: 940  XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770
                 +P+ SP Y    PS S T+P+   T+PSY   +PS + T+PSY P +PT S  +P
Sbjct: 1629 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1687

Query: 769  TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +  P + PS    S S                 ++P+Y   SPSY  + P+ SPS
Sbjct: 1688 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1741



 Score = 73.2 bits (178), Expect = 3e-10
 Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP  + T+P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1616 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1675

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
                   +PS SP Y    PS S T+PS   T+PSY   +PS + ++PSY P +P+ S  
Sbjct: 1676 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1732

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608
             PT P ++ PSSPQ S                    +PAY   SP Y  + P+ SP
Sbjct: 1733 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1768



 Score = 68.9 bits (167), Expect = 6e-09
 Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SPT + T+P   P     SPT    +PT P      P Y PS+P  S T           
Sbjct: 1651 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1710

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800
                   +PS SP Y    PS S T+PS +PS          Y   +P  + T+PSY P 
Sbjct: 1711 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1769

Query: 799  ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629
                TP +   +PT P ++ P+SP  S S                  +P Y   SPSY  
Sbjct: 1770 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1824

Query: 628  SVPAMSPS 605
            + PA SPS
Sbjct: 1825 ASPAYSPS 1832



 Score = 62.0 bits (149), Expect = 1e-06
 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%)
 Frame = -2

Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899
            M P     SP+ A  A  + P Y P+     ++                + +P +SP Y 
Sbjct: 1531 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 1585

Query: 898  SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740
               P+ + T+PS T   PSY   +PS + T+P+Y P     +PT+   +PT P ++ P+S
Sbjct: 1586 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1644

Query: 739  PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            P  S +  T               +P+Y   SPSY  + P  SPS
Sbjct: 1645 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1685



 Score = 60.8 bits (146), Expect = 2e-06
 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + ++P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1686 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1745

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776
                   +PS SP Y    PS S  +P  TP+   Y   +P+ + T+P+Y P +P  S  
Sbjct: 1746 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1804

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +P   P +   SP  S S                  +P+Y   SP Y  + P  SP+
Sbjct: 1805 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1860


>EFX75312.1 hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex]
          Length = 1895

 Score = 77.0 bits (188), Expect = 2e-11
 Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%)
 Frame = -2

Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941
            MSP   + +P M P ++  SP  A T+P+M P    Y P++P  S T             
Sbjct: 1571 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1628

Query: 940  XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770
                 +P+ SP Y    PS S T+P+   T+PSY   +PS + T+PSY P +PT S  +P
Sbjct: 1629 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1687

Query: 769  TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +  P + PS    S S                 ++P+Y   SPSY  + P+ SPS
Sbjct: 1688 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1741



 Score = 73.2 bits (178), Expect = 3e-10
 Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP  + T+P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1616 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1675

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
                   +PS SP Y    PS S T+PS   T+PSY   +PS + ++PSY P +P+ S  
Sbjct: 1676 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1732

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608
             PT P ++ PSSPQ S                    +PAY   SP Y  + P+ SP
Sbjct: 1733 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1768



 Score = 68.9 bits (167), Expect = 6e-09
 Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SPT + T+P   P     SPT    +PT P      P Y PS+P  S T           
Sbjct: 1651 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1710

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800
                   +PS SP Y    PS S T+PS +PS          Y   +P  + T+PSY P 
Sbjct: 1711 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1769

Query: 799  ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629
                TP +   +PT P ++ P+SP  S S                  +P Y   SPSY  
Sbjct: 1770 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1824

Query: 628  SVPAMSPS 605
            + PA SPS
Sbjct: 1825 ASPAYSPS 1832



 Score = 62.0 bits (149), Expect = 1e-06
 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%)
 Frame = -2

Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899
            M P     SP+ A  A  + P Y P+     ++                + +P +SP Y 
Sbjct: 1531 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 1585

Query: 898  SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740
               P+ + T+PS T   PSY   +PS + T+P+Y P     +PT+   +PT P ++ P+S
Sbjct: 1586 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1644

Query: 739  PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            P  S +  T               +P+Y   SPSY  + P  SPS
Sbjct: 1645 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1685



 Score = 60.8 bits (146), Expect = 2e-06
 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + ++P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1686 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1745

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776
                   +PS SP Y    PS S  +P  TP+   Y   +P+ + T+P+Y P +P  S  
Sbjct: 1746 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1804

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +P   P +   SP  S S                  +P+Y   SP Y  + P  SP+
Sbjct: 1805 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1860


>XP_014221062.1 PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Trichogramma pretiosum]
          Length = 1920

 Score = 77.0 bits (188), Expect = 2e-11
 Identities = 57/180 (31%), Positives = 77/180 (42%), Gaps = 12/180 (6%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + T+P   P     SPT    +PT P      P Y P++PI S T           
Sbjct: 1664 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPIYSPTSPSYSP----- 1718

Query: 946  XXXXSVTAPS---VSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTA 785
                  T+PS    SP Y    PS S T+PS   T+PSY   +PS + T+PSY P +P  
Sbjct: 1719 ------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 1772

Query: 784  SVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +  +P+  P +   SP       T               +P Y   SPSY  + P+ SPS
Sbjct: 1773 TPASPSYSPSSPNYSPTSPSYSPTSPSFAGGTPPRYTPTSPTYSPTSPSYSPTSPSYSPS 1832



 Score = 71.6 bits (174), Expect = 9e-10
 Identities = 56/181 (30%), Positives = 82/181 (45%), Gaps = 9/181 (4%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + T+P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1636 SPSYSPTSPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1695

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
                   +P+ SP+Y    PS S T+PS   T+PSY   +PS + T+PSY P +P+ S  
Sbjct: 1696 SPTSPSYSPT-SPIYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-- 1752

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSDFP 596
             PT P ++ P+SP  S +                  +P+Y   SP+Y  + P+ SP+   
Sbjct: 1753 -PTSPSYS-PTSPSYSPTSPNYTPA-----------SPSYSPSSPNYSPTSPSYSPTSPS 1799

Query: 595  F 593
            F
Sbjct: 1800 F 1800



 Score = 66.6 bits (161), Expect = 4e-08
 Identities = 53/178 (29%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929
            SP+ + T+P   P     SPT  + +PT P  Y P++P  S T                 
Sbjct: 1685 SPSYSPTSPSYSPTSPSYSPTSPIYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1743

Query: 928  TAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTM-- 764
             +P+ SP Y    PS S T+PS   T+P+Y   +PS + ++P+Y P +P+ S  +P+   
Sbjct: 1744 YSPT-SPSYSPTSPSYSPTSPSYSPTSPNYTPASPSYSPSSPNYSPTSPSYSPTSPSFAG 1802

Query: 763  --PPFNKPSSPQ---KSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
              PP   P+SP     S S                A +  Y   SP+Y  + P  SPS
Sbjct: 1803 GTPPRYTPTSPTYSPTSPSYSPTSPSYSPSSPQHSAISTNYSPSSPNYSPTSPTYSPS 1860



 Score = 66.2 bits (160), Expect = 5e-08
 Identities = 57/183 (31%), Positives = 76/183 (41%), Gaps = 16/183 (8%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + T+P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1713 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 1772

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS----TTPSYKSVAPSKAVTAPSYKPLTPTASV 779
                   +PS SP Y    PS S T+PS    T P Y   +P+ + T+PSY P +P+ S 
Sbjct: 1773 TPASPSYSPS-SPNYSPTSPSYSPTSPSFAGGTPPRYTPTSPTYSPTSPSYSPTSPSYSP 1831

Query: 778  MTPTMPPFN---KPSSPQKSMSQETXXXXXXXXXXXXPANAPA---YVTKSPSYPSSVPA 617
             +P     +    PSSP  S +  T            P  +P    Y   SPSY  + PA
Sbjct: 1832 SSPQHSAISTNYSPSSPNYSPTSPTYSPSSTRYSPTSPTYSPPSFNYSPTSPSYSPTSPA 1891

Query: 616  MSP 608
             SP
Sbjct: 1892 YSP 1894



 Score = 65.1 bits (157), Expect = 1e-07
 Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
 Frame = -2

Query: 1114 YMSP--TKAVTAPIMPPFHNY-MSPTKAVTAP---TMPPLYKPSAPIKSFTXXXXXXXXX 953
            YMSP  T    +P+ P  ++Y  SP++  ++    T  P Y PS+P    T         
Sbjct: 1571 YMSPAGTSPRYSPMSPSGYSYPASPSRTPSSDHYSTASPNYSPSSPKYVPTSPSYSPTSP 1630

Query: 952  XXXXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTAS 782
                     +P+ SP Y    PS S T+PS   T+PSY   +PS + T+PSY P +P+  
Sbjct: 1631 SYSPTSPSYSPT-SPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-- 1687

Query: 781  VMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
              +PT P ++ P+SP  S +                  +P+Y   SPSY  + P+ SP+
Sbjct: 1688 -YSPTSPSYS-PTSPSYSPTS-----------PIYSPTSPSYSPTSPSYSPTSPSYSPT 1733


>JAN40900.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna]
          Length = 1930

 Score = 77.0 bits (188), Expect = 2e-11
 Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%)
 Frame = -2

Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941
            MSP   + +P M P ++  SP  A T+P+M P    Y P++P  S T             
Sbjct: 1606 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1663

Query: 940  XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770
                 +P+ SP Y    PS S T+P+   T+PSY   +PS + T+PSY P +PT S  +P
Sbjct: 1664 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1722

Query: 769  TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +  P + PS    S S                 ++P+Y   SPSY  + P+ SPS
Sbjct: 1723 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1776



 Score = 73.2 bits (178), Expect = 3e-10
 Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP  + T+P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1651 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1710

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
                   +PS SP Y    PS S T+PS   T+PSY   +PS + ++PSY P +P+ S  
Sbjct: 1711 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1767

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608
             PT P ++ PSSPQ S                    +PAY   SP Y  + P+ SP
Sbjct: 1768 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1803



 Score = 68.9 bits (167), Expect = 6e-09
 Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SPT + T+P   P     SPT    +PT P      P Y PS+P  S T           
Sbjct: 1686 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1745

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800
                   +PS SP Y    PS S T+PS +PS          Y   +P  + T+PSY P 
Sbjct: 1746 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1804

Query: 799  ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629
                TP +   +PT P ++ P+SP  S S                  +P Y   SPSY  
Sbjct: 1805 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1859

Query: 628  SVPAMSPS 605
            + PA SPS
Sbjct: 1860 ASPAYSPS 1867



 Score = 62.0 bits (149), Expect = 1e-06
 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%)
 Frame = -2

Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899
            M P     SP+ A  A  + P Y P+     ++                + +P +SP Y 
Sbjct: 1566 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 1620

Query: 898  SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740
               P+ + T+PS T   PSY   +PS + T+P+Y P     +PT+   +PT P ++ P+S
Sbjct: 1621 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1679

Query: 739  PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            P  S +  T               +P+Y   SPSY  + P  SPS
Sbjct: 1680 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1720



 Score = 60.8 bits (146), Expect = 2e-06
 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + ++P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1721 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1780

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776
                   +PS SP Y    PS S  +P  TP+   Y   +P+ + T+P+Y P +P  S  
Sbjct: 1781 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1839

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +P   P +   SP  S S                  +P+Y   SP Y  + P  SP+
Sbjct: 1840 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1895


>JAN74022.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna]
          Length = 1936

 Score = 77.0 bits (188), Expect = 2e-11
 Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%)
 Frame = -2

Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941
            MSP   + +P M P ++  SP  A T+P+M P    Y P++P  S T             
Sbjct: 1612 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1669

Query: 940  XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770
                 +P+ SP Y    PS S T+P+   T+PSY   +PS + T+PSY P +PT S  +P
Sbjct: 1670 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1728

Query: 769  TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +  P + PS    S S                 ++P+Y   SPSY  + P+ SPS
Sbjct: 1729 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1782



 Score = 73.2 bits (178), Expect = 3e-10
 Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP  + T+P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1657 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1716

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
                   +PS SP Y    PS S T+PS   T+PSY   +PS + ++PSY P +P+ S  
Sbjct: 1717 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1773

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608
             PT P ++ PSSPQ S                    +PAY   SP Y  + P+ SP
Sbjct: 1774 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1809



 Score = 68.9 bits (167), Expect = 6e-09
 Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SPT + T+P   P     SPT    +PT P      P Y PS+P  S T           
Sbjct: 1692 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1751

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800
                   +PS SP Y    PS S T+PS +PS          Y   +P  + T+PSY P 
Sbjct: 1752 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1810

Query: 799  ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629
                TP +   +PT P ++ P+SP  S S                  +P Y   SPSY  
Sbjct: 1811 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1865

Query: 628  SVPAMSPS 605
            + PA SPS
Sbjct: 1866 ASPAYSPS 1873



 Score = 62.0 bits (149), Expect = 1e-06
 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%)
 Frame = -2

Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899
            M P     SP+ A  A  + P Y P+     ++                + +P +SP Y 
Sbjct: 1572 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 1626

Query: 898  SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740
               P+ + T+PS T   PSY   +PS + T+P+Y P     +PT+   +PT P ++ P+S
Sbjct: 1627 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1685

Query: 739  PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            P  S +  T               +P+Y   SPSY  + P  SPS
Sbjct: 1686 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1726



 Score = 60.8 bits (146), Expect = 2e-06
 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+ + ++P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1727 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1786

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776
                   +PS SP Y    PS S  +P  TP+   Y   +P+ + T+P+Y P +P  S  
Sbjct: 1787 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1845

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +P   P +   SP  S S                  +P+Y   SP Y  + P  SP+
Sbjct: 1846 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1901


>JAN55944.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna]
          Length = 1273

 Score = 76.6 bits (187), Expect = 2e-11
 Identities = 57/175 (32%), Positives = 81/175 (46%), Gaps = 6/175 (3%)
 Frame = -2

Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941
            MSP   + +P M P ++  SP  A T+P+M P    Y P++P  S T             
Sbjct: 949  MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1006

Query: 940  XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770
                 +P+ SP Y    PS S T+P+   T+PSY   +PS + T+PSY P +PT S  +P
Sbjct: 1007 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1065

Query: 769  TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            +  P   PS    S S                 ++P+Y   SPSY  + P+ SPS
Sbjct: 1066 SCKP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1119



 Score = 73.9 bits (180), Expect = 1e-10
 Identities = 59/176 (33%), Positives = 78/176 (44%), Gaps = 9/176 (5%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP  + T+P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 994  SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1053

Query: 946  XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
                   +PS SP  K   PS S T+PS   T+PSY   +PS + ++PSY P +P+ S  
Sbjct: 1054 SPTSPTYSPS-SPSCKPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1110

Query: 775  TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608
             PT P ++ PSSPQ S                    +PAY   SP YP + P+ SP
Sbjct: 1111 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYPPTSPSYSP 1146



 Score = 62.0 bits (149), Expect = 1e-06
 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%)
 Frame = -2

Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899
            M P     SP+ A  A  + P Y P+     ++                + +P +SP Y 
Sbjct: 909  MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 963

Query: 898  SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740
               P+ + T+PS T   PSY   +PS + T+P+Y P     +PT+   +PT P ++ P+S
Sbjct: 964  PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1022

Query: 739  PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
            P  S +  T               +P+Y   SPSY  + P  SPS
Sbjct: 1023 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1063



 Score = 59.3 bits (142), Expect = 7e-06
 Identities = 49/186 (26%), Positives = 72/186 (38%), Gaps = 18/186 (9%)
 Frame = -2

Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
            SP+   T+P   P     SPT    +PT P      P Y P++P  S T           
Sbjct: 1064 SPSCKPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1123

Query: 946  XXXXSVTAPS------VSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLT 794
                   +PS       SP Y  G P  +  +P    T+P+Y   +P+ + ++P Y P +
Sbjct: 1124 SPRSPAYSPSSPKYPPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPTS 1183

Query: 793  PTASVMTPTMPPFN---KPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSV 623
            P  S  +P   P +    P+SP  S S                  +P+Y   SP Y  + 
Sbjct: 1184 PRYSPASPKYSPTSPSYSPASPAYSPSSPN-----------YSPTSPSYSPASPKYSPTS 1232

Query: 622  PAMSPS 605
            P  SP+
Sbjct: 1233 PTYSPA 1238


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