BLASTX nr result
ID: Ephedra29_contig00004998
seq
BLASTX 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ephedra29_contig00004998 (1121 letters) Database: ./nr 115,041,592 sequences; 42,171,959,267 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BAJ78675.1 RNA polymerase II largest subunit, partial [Metylopho... 80 2e-12 KZS06240.1 DNA-directed RNA polymerase [Daphnia magna] 78 3e-12 ELU15060.1 hypothetical protein CAPTEDRAFT_170227 [Capitella tel... 79 5e-12 XP_013419697.1 PREDICTED: DNA-directed RNA polymerase II subunit... 78 7e-12 XP_013401160.1 PREDICTED: DNA-directed RNA polymerase II subunit... 78 7e-12 BAJ52637.1 RNA polymerase II largest subunit, partial [Monosiga ... 78 8e-12 BAJ78650.1 RNA polymerase II largest subunit, partial [Isolepism... 78 9e-12 AAB24966.1 RNA polymerase II largest subunit, partial [Dictyoste... 77 1e-11 JAN55945.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ... 77 1e-11 XP_641735.1 RNA polymerase II largest subunit [Dictyostelium dis... 77 2e-11 BAO20842.1 RNA polymerase II largest subunit, partial [Daphnia p... 77 2e-11 JAN50643.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ... 77 2e-11 JAN64786.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ... 77 2e-11 JAN53042.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ... 77 2e-11 JAN42539.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ... 77 2e-11 EFX75312.1 hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex] 77 2e-11 XP_014221062.1 PREDICTED: DNA-directed RNA polymerase II subunit... 77 2e-11 JAN40900.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ... 77 2e-11 JAN74022.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ... 77 2e-11 JAN55944.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ... 77 2e-11 >BAJ78675.1 RNA polymerase II largest subunit, partial [Metylophorus sp. E-43] Length = 1792 Score = 80.1 bits (196), Expect = 2e-12 Identities = 61/180 (33%), Positives = 80/180 (44%), Gaps = 12/180 (6%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SPT A T+P M P SPT +PT P P Y P++P S T Sbjct: 1592 SPTYAPTSPSMSPASPNYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSP----- 1646 Query: 946 XXXXSVTAPS---VSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTA 785 T+PS SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ Sbjct: 1647 ------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1700 Query: 784 SVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 S +P+ P PS S S ++P Y +SPSY + P+ SPS Sbjct: 1701 SPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPQSPSYSPTSPSYSPS 1759 Score = 73.2 bits (178), Expect = 3e-10 Identities = 55/177 (31%), Positives = 79/177 (44%), Gaps = 9/177 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + T+P P SPT +PT P P Y P++P S T Sbjct: 1613 SPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1672 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776 +P+ SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ S Sbjct: 1673 SPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1731 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 +P+ P + +PQ T PA +P+Y SP Y + P+ SP+ Sbjct: 1732 SPSYSPSSPNYTPQSPSYSPTSPSYSPSSPRYSPA-SPSYSPSSPKYSPTSPSYSPT 1787 Score = 72.8 bits (177), Expect = 4e-10 Identities = 55/167 (32%), Positives = 76/167 (45%), Gaps = 9/167 (5%) Frame = -2 Query: 1078 MPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPS--- 917 + P ++ SPT A T+P+M P Y P++P S T T+PS Sbjct: 1584 LSPSYSPSSPTYAPTSPSMSPASPNYSPTSPSYSPTSPNYSP-----------TSPSYSP 1632 Query: 916 VSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKP 746 SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ S +P+ P P Sbjct: 1633 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSP 1691 Query: 745 SSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 S S S +P+Y SPSY + P+ SPS Sbjct: 1692 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPS 1738 Score = 68.9 bits (167), Expect = 6e-09 Identities = 53/171 (30%), Positives = 76/171 (44%), Gaps = 12/171 (7%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + T+P P SPT +PT P P Y P++P S T Sbjct: 1627 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1686 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776 +P+ SP Y PS S T+PS T+PSY +PS + T+PSY P +P + Sbjct: 1687 SPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPQ 1745 Query: 775 TPTMPPFN---KPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYP 632 +P+ P + PSSP+ S + + +P+Y SPSYP Sbjct: 1746 SPSYSPTSPSYSPSSPRYSPASPSYSPSSPKYSP----TSPSYSPTSPSYP 1792 >KZS06240.1 DNA-directed RNA polymerase [Daphnia magna] Length = 436 Score = 78.2 bits (191), Expect = 3e-12 Identities = 56/168 (33%), Positives = 77/168 (45%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929 SP A T+P+M P SPT +PT P Y P++P S T Sbjct: 129 SPAYAPTSPLMTPSSPSYSPTSPSYSPTSPN-YSPTSPGYSPTSPSYSP----------- 176 Query: 928 TAPSVSPMYKSGLPSKSNTAPSTTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNK 749 T+PS SP S P+ +P T+PSY +PS + T+PSY P +PT S +P+ P + Sbjct: 177 TSPSYSPTSPSYSPTSPTYSP-TSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSP-SS 234 Query: 748 PSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 PS S S ++P+Y SPSY + P+ SPS Sbjct: 235 PSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 282 Score = 73.2 bits (178), Expect = 1e-10 Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP + T+P P SPT +PT P P Y P++P S T Sbjct: 157 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 216 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776 +PS SP Y PS S T+PS T+PSY +PS + ++PSY P +P+ S Sbjct: 217 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 273 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608 PT P ++ PSSPQ S +PAY SP Y + P+ SP Sbjct: 274 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 309 Score = 68.9 bits (167), Expect = 3e-09 Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SPT + T+P P SPT +PT P P Y PS+P S T Sbjct: 192 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 251 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800 +PS SP Y PS S T+PS +PS Y +P + T+PSY P Sbjct: 252 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 310 Query: 799 ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629 TP + +PT P ++ P+SP S S +P Y SPSY Sbjct: 311 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 365 Query: 628 SVPAMSPS 605 + PA SPS Sbjct: 366 ASPAYSPS 373 Score = 60.8 bits (146), Expect = 1e-06 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + ++P P SPT +PT P P Y P++P S T Sbjct: 227 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 286 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776 +PS SP Y PS S +P TP+ Y +P+ + T+P+Y P +P S Sbjct: 287 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 345 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 +P P + SP S S +P+Y SP Y + P SP+ Sbjct: 346 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 401 Score = 59.7 bits (143), Expect = 3e-06 Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 7/165 (4%) Frame = -2 Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899 M P SP+ A A + P Y P+ ++ + +P +SP Y Sbjct: 72 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 126 Query: 898 SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740 P+ + T+P T PSY +PS + T+P+Y P +PT+ +PT P ++ P+S Sbjct: 127 PSSPAYAPTSPLMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 185 Query: 739 PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 P S + T +P+Y SPSY + P SPS Sbjct: 186 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 226 >ELU15060.1 hypothetical protein CAPTEDRAFT_170227 [Capitella teleta] Length = 1916 Score = 78.6 bits (192), Expect = 5e-12 Identities = 57/177 (32%), Positives = 80/177 (45%), Gaps = 9/177 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + T+P PP SPT +PT P P Y P++P S T Sbjct: 1584 SPSYSPTSPSYPPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1643 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776 +P+ SP Y PS S T+PS T+PSY +PS + T+P+Y P +P+ S Sbjct: 1644 SPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPT 1702 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 +P+ P + SPQ S S +P+Y SPSY + P+ SPS Sbjct: 1703 SPSYSPTSPNYSPQ-SPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPTSPSYSPS 1758 Score = 74.3 bits (181), Expect = 1e-10 Identities = 57/180 (31%), Positives = 80/180 (44%), Gaps = 12/180 (6%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + T+P P SPT +PT P P Y P++P S T Sbjct: 1598 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1657 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776 +P+ SP Y PS S T+PS T+P+Y +PS + T+PSY P +P S Sbjct: 1658 SPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPNYSPQ 1716 Query: 775 TPTMPPFN---KPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 +P+ P + PSSP+ S + + +P+Y SPSY S P SPS Sbjct: 1717 SPSYSPTSPSYSPSSPKYSPTSPS-----------YSPTSPSYSPTSPSYSPSSPQYSPS 1765 Score = 72.8 bits (177), Expect = 4e-10 Identities = 58/177 (32%), Positives = 80/177 (45%), Gaps = 9/177 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + T+P P SPT +PT P P Y P++P S T Sbjct: 1640 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSY 1699 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776 +P+ SP Y PS S T+PS +PS Y +PS + T+PSY P +P+ S Sbjct: 1700 SPTSPSYSPT-SPNYSPQSPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPTSPSYS-- 1756 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 P+ P ++ PSSPQ S + +N+P Y SP Y S P+ SPS Sbjct: 1757 -PSSPQYS-PSSPQYSPA----------------SNSPQYTPASPHYSPSSPSYSPS 1795 Score = 60.8 bits (146), Expect = 2e-06 Identities = 50/183 (27%), Positives = 74/183 (40%), Gaps = 15/183 (8%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + T+P P SPT +PT P P Y PS+P ++ Sbjct: 1717 SPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPTSPSYSPSSP--QYSPSSPQYSPASN 1774 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS------TTPSYKSVAPSKAVTAPSYKPLTPTA 785 + +P SP S PS +PS T+P Y +P + ++P Y P +P Sbjct: 1775 SPQYTPASPHYSPSSPSYSPSSPQYSPSSPSYTPTSPKYSPSSPDYSPSSPQYSPASPQY 1834 Query: 784 SVMTPTMPPFN---KPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAM 614 S +P P + PSSPQ S + + +P+Y SP Y + PA Sbjct: 1835 SPGSPDYSPNSPSYSPSSPQYSPASPSYSPTSPKYSP----ESPSYSPSSPKYSPTSPAY 1890 Query: 613 SPS 605 SP+ Sbjct: 1891 SPT 1893 Score = 60.5 bits (145), Expect = 3e-06 Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 14/182 (7%) Frame = -2 Query: 1108 SPTKAVTAPIMPPF-HNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXS 932 SP+ + +P M P+ H+ +P A + P Y PS+P S Sbjct: 1503 SPSSNMGSPQMTPWGHDQSTPIPVGGANS--PSYSPSSPSFMPASPATPHSPAYSPQSYS 1560 Query: 931 VTAPSVSPM---YKSGLPSKSNTAPS----------TTPSYKSVAPSKAVTAPSYKPLTP 791 +PS SP Y P+ S T+PS T+PSY +PS + T+PSY P +P Sbjct: 1561 PASPSYSPGSAGYSPSSPNFSPTSPSYSPTSPSYPPTSPSYSPTSPSYSPTSPSYSPTSP 1620 Query: 790 TASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMS 611 + S +P+ P PS S S +P+Y SPSY + P+ S Sbjct: 1621 SYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1679 Query: 610 PS 605 P+ Sbjct: 1680 PT 1681 >XP_013419697.1 PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform X1 [Lingula anatina] XP_013419698.1 PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform X2 [Lingula anatina] Length = 1939 Score = 78.2 bits (191), Expect = 7e-12 Identities = 58/175 (33%), Positives = 78/175 (44%), Gaps = 3/175 (1%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929 SPT + T+P P SPT +PT P Y P++P S T Sbjct: 1619 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1677 Query: 928 TAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPP 758 +P+ SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ S +P+ P Sbjct: 1678 YSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1736 Query: 757 FNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSDFPF 593 PS S S ++P+Y SPSY S P+ SPS F Sbjct: 1737 -TSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPTSPSYSPSSPSYSPSSPKF 1790 Score = 74.3 bits (181), Expect = 1e-10 Identities = 57/174 (32%), Positives = 77/174 (44%), Gaps = 6/174 (3%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929 SP+ + T+P P SPT +PT P Y P++P S T Sbjct: 1598 SPSYSPTSPSYSPSSPGYSPTSPTYSPTSPS-YSPTSPSYSPTSPSYSP----------- 1645 Query: 928 TAPS---VSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPT 767 T+PS SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ S +P+ Sbjct: 1646 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705 Query: 766 MPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 P PS S S +P+Y SPSY + P+ SPS Sbjct: 1706 YSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPS 1758 Score = 67.8 bits (164), Expect = 2e-08 Identities = 57/188 (30%), Positives = 76/188 (40%), Gaps = 20/188 (10%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + T+P P SPT +PT P P Y PS+P S T Sbjct: 1724 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPTSPSYSPSSPSY 1783 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS----------TTPSYKSVAPSKAVTAPSYKPL 797 +P+ SP Y PS S ++P T+P Y +PS + T+P Y P Sbjct: 1784 SPSSPKFSPA-SPSYSPTSPSYSPSSPQYSPSSPQYTPTSPKYSPTSPSYSPTSPKYSPA 1842 Query: 796 ----TPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629 TPT+ TPT P ++ PSSPQ S S +P Y SP Y Sbjct: 1843 SPTYTPTSPKYTPTSPEYS-PSSPQYSPSSPKYSPA-----------SPTYSPTSPKYSP 1890 Query: 628 SVPAMSPS 605 + P SP+ Sbjct: 1891 ASPTYSPT 1898 Score = 67.4 bits (163), Expect = 2e-08 Identities = 54/177 (30%), Positives = 76/177 (42%), Gaps = 9/177 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + T+P P SPT +PT P P Y P++P S T Sbjct: 1689 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1748 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPSYKSVAPSKAVTAPSYKPLTPTASVMTPT 767 +PS SP Y PS S T+PS +PS S +PS +P+ +PT+ +P+ Sbjct: 1749 SPTSPSYSPS-SPSYSPSSPSYSPTSPSYSPSSPSYSPSSPKFSPASPSYSPTSPSYSPS 1807 Query: 766 MPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPA---YVTKSPSYPSSVPAMSPS 605 P ++ PSSPQ + + P +PA Y SP Y + P SPS Sbjct: 1808 SPQYS-PSSPQYTPTSPKYSPTSPSYSPTSPKYSPASPTYTPTSPKYTPTSPEYSPS 1863 Score = 59.7 bits (143), Expect = 6e-06 Identities = 46/169 (27%), Positives = 69/169 (40%) Frame = -2 Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXS 932 +SP A M P ++ SP+ ++P M P +P Sbjct: 1565 ISPYIPSPAGAMSPSYSPASPSYIPSSPAMTPQSPSYSP--------------------- 1603 Query: 931 VTAPSVSPMYKSGLPSKSNTAPSTTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFN 752 T+PS SP P+ +P T+PSY +PS + T+PSY P +P+ S +P+ P Sbjct: 1604 -TSPSYSPSSPGYSPTSPTYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-T 1660 Query: 751 KPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 PS S S +P+Y SPSY + P+ SP+ Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1709 >XP_013401160.1 PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Lingula anatina] Length = 1939 Score = 78.2 bits (191), Expect = 7e-12 Identities = 58/175 (33%), Positives = 78/175 (44%), Gaps = 3/175 (1%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929 SPT + T+P P SPT +PT P Y P++P S T Sbjct: 1619 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1677 Query: 928 TAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPP 758 +P+ SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ S +P+ P Sbjct: 1678 YSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1736 Query: 757 FNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSDFPF 593 PS S S ++P+Y SPSY S P+ SPS F Sbjct: 1737 -TSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPTSPSYSPSSPSYSPSSPKF 1790 Score = 74.3 bits (181), Expect = 1e-10 Identities = 57/174 (32%), Positives = 77/174 (44%), Gaps = 6/174 (3%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929 SP+ + T+P P SPT +PT P Y P++P S T Sbjct: 1598 SPSYSPTSPSYSPSSPGYSPTSPTYSPTSPS-YSPTSPSYSPTSPSYSP----------- 1645 Query: 928 TAPS---VSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPT 767 T+PS SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ S +P+ Sbjct: 1646 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705 Query: 766 MPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 P PS S S +P+Y SPSY + P+ SPS Sbjct: 1706 YSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPS 1758 Score = 67.8 bits (164), Expect = 2e-08 Identities = 57/188 (30%), Positives = 76/188 (40%), Gaps = 20/188 (10%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + T+P P SPT +PT P P Y PS+P S T Sbjct: 1724 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPTSPSYSPSSPSY 1783 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS----------TTPSYKSVAPSKAVTAPSYKPL 797 +P+ SP Y PS S ++P T+P Y +PS + T+P Y P Sbjct: 1784 SPSSPKFSPA-SPSYSPTSPSYSPSSPQYSPSSPQYTPTSPKYSPTSPSYSPTSPKYSPA 1842 Query: 796 ----TPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629 TPT+ TPT P ++ PSSPQ S S +P Y SP Y Sbjct: 1843 SPTYTPTSPKYTPTSPEYS-PSSPQYSPSSPKYSPA-----------SPTYSPTSPKYSP 1890 Query: 628 SVPAMSPS 605 + P SP+ Sbjct: 1891 ASPTYSPT 1898 Score = 67.4 bits (163), Expect = 2e-08 Identities = 54/177 (30%), Positives = 76/177 (42%), Gaps = 9/177 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + T+P P SPT +PT P P Y P++P S T Sbjct: 1689 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1748 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPSYKSVAPSKAVTAPSYKPLTPTASVMTPT 767 +PS SP Y PS S T+PS +PS S +PS +P+ +PT+ +P+ Sbjct: 1749 SPTSPSYSPS-SPSYSPSSPSYSPTSPSYSPSSPSYSPSSPKFSPASPSYSPTSPSYSPS 1807 Query: 766 MPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPA---YVTKSPSYPSSVPAMSPS 605 P ++ PSSPQ + + P +PA Y SP Y + P SPS Sbjct: 1808 SPQYS-PSSPQYTPTSPKYSPTSPSYSPTSPKYSPASPTYTPTSPKYTPTSPEYSPS 1863 Score = 59.7 bits (143), Expect = 6e-06 Identities = 46/169 (27%), Positives = 69/169 (40%) Frame = -2 Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXS 932 +SP A M P ++ SP+ ++P M P +P Sbjct: 1565 ISPYIPSPAGAMSPSYSPASPSYIPSSPAMTPQSPSYSP--------------------- 1603 Query: 931 VTAPSVSPMYKSGLPSKSNTAPSTTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFN 752 T+PS SP P+ +P T+PSY +PS + T+PSY P +P+ S +P+ P Sbjct: 1604 -TSPSYSPSSPGYSPTSPTYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-T 1660 Query: 751 KPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 PS S S +P+Y SPSY + P+ SP+ Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1709 >BAJ52637.1 RNA polymerase II largest subunit, partial [Monosiga ovata] Length = 1289 Score = 77.8 bits (190), Expect = 8e-12 Identities = 59/182 (32%), Positives = 79/182 (43%), Gaps = 9/182 (4%) Frame = -2 Query: 1114 YMSPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXX 953 +MSPT +P P + SPT +PT P P Y P++P S T Sbjct: 1105 HMSPTSPKYSPTSPSY----SPTSPSYSPTSPKYSPTSPSYSPTSPSYSPTSPKYSPTSP 1160 Query: 952 XXXXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTAS 782 +P+ SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ S Sbjct: 1161 SYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1219 Query: 781 VMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSD 602 +P+ P PS S S ++P Y SPSY S P+ SPS Sbjct: 1220 PTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYSPSSPSYSPSSPSYSPSS 1278 Query: 601 FP 596 P Sbjct: 1279 GP 1280 Score = 63.2 bits (152), Expect = 4e-07 Identities = 45/139 (32%), Positives = 62/139 (44%), Gaps = 9/139 (6%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + T+P P SPT +PT P P Y P++P S T Sbjct: 1145 SPSYSPTSPKYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1204 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776 +P+ SP Y PS S T+PS T+PSY +PS + T+PSY P +P S Sbjct: 1205 SPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYSPS 1263 Query: 775 TPTMPPFNKPSSPQKSMSQ 719 +P+ P + SP Q Sbjct: 1264 SPSYSPSSPSYSPSSGPGQ 1282 >BAJ78650.1 RNA polymerase II largest subunit, partial [Isolepisma japonica] Length = 1775 Score = 77.8 bits (190), Expect = 9e-12 Identities = 57/171 (33%), Positives = 76/171 (44%), Gaps = 3/171 (1%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929 SP A T+P M P SPT +PT P Y P++P S T Sbjct: 1590 SPAYAPTSPSMTPASPNYSPTSPSYSPTSPK-YSPASPSYSPTSPSYSPTSPSYSPTSPS 1648 Query: 928 TAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPP 758 +P+ SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ S +P+ P Sbjct: 1649 YSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1707 Query: 757 FNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 PS S S ++P Y SPSY + P+ SPS Sbjct: 1708 -TSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPASPSYSPTSPSYSPS 1757 Score = 66.6 bits (161), Expect = 4e-08 Identities = 54/174 (31%), Positives = 78/174 (44%), Gaps = 6/174 (3%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXXX 938 SP A M P ++ SP A T+P+M P Y P++P S T Sbjct: 1572 SPYVPSPAAGMSPSYSPSSPAYAPTSPSMTPASPNYSPTSPSYSPT-------------- 1617 Query: 937 XSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPT 767 SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ +PT Sbjct: 1618 --------SPKYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS---YSPT 1666 Query: 766 MPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 P ++ P+SP S + + +P+Y SPSY + P+ SP+ Sbjct: 1667 SPSYS-PTSPSYSPTSPS-----------YSPTSPSYSPTSPSYSPTSPSYSPT 1708 Score = 63.2 bits (152), Expect = 5e-07 Identities = 52/167 (31%), Positives = 74/167 (44%), Gaps = 9/167 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + T+P P SPT +PT P P Y P++P S T Sbjct: 1632 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1691 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776 +P+ SP Y PS S T+PS T+PSY +PS + ++P+Y P +P+ S Sbjct: 1692 SPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPASPSYS-- 1748 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSY 635 PT P ++ PSSPQ S + +P+Y SP Y Sbjct: 1749 -PTSPSYS-PSSPQYSPA------------------SPSYSPSSPKY 1775 >AAB24966.1 RNA polymerase II largest subunit, partial [Dictyostelium discoideum] Length = 902 Score = 77.0 bits (188), Expect = 1e-11 Identities = 57/175 (32%), Positives = 78/175 (44%), Gaps = 3/175 (1%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929 SPT + T+P P SPT +PT P Y P++P S T Sbjct: 725 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPFYSPTSPS 783 Query: 928 TAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPP 758 +P+ SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ S +P+ P Sbjct: 784 YSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 842 Query: 757 FNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSDFPF 593 + SP T ++P+Y SPSY S P+ SPS F Sbjct: 843 TSPSYSPTSPSYSPTSPSYSP--------SSPSYSPSSPSYSPSSPSYSPSSPTF 889 >JAN55945.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna] Length = 1273 Score = 77.0 bits (188), Expect = 1e-11 Identities = 56/168 (33%), Positives = 76/168 (45%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929 SP A T+P M P SPT +PT P Y P++P S T Sbjct: 966 SPAYAPTSPSMTPSSPSYSPTSPSYSPTSPN-YSPTSPGYSPTSPSYSP----------- 1013 Query: 928 TAPSVSPMYKSGLPSKSNTAPSTTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNK 749 T+PS SP S P+ +P T+PSY +PS + T+PSY P +PT S +P+ P + Sbjct: 1014 TSPSYSPTSPSYSPTSPTDSP-TSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSP-SS 1071 Query: 748 PSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 PS S S ++P+Y SPSY + P+ SPS Sbjct: 1072 PSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1119 Score = 70.9 bits (172), Expect = 1e-09 Identities = 58/176 (32%), Positives = 78/176 (44%), Gaps = 9/176 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + T+P P SPT +PT P P Y P++P S T Sbjct: 1008 SPSYSPTSPSYSPTSPSYSPTSPTDSPTSPSYSPTSPSYSPTSPSYSPTSPTY------- 1060 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776 +PS SP Y PS S T+PS T+PSY +PS + ++PSY P +P+ S Sbjct: 1061 -------SPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1110 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608 PT P ++ PSSPQ S +PAY SP Y + P+ SP Sbjct: 1111 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1146 Score = 69.3 bits (168), Expect = 5e-09 Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SPT + T+P P SPT +PT P P Y PS+P S T Sbjct: 1029 SPTDSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1088 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800 +PS SP Y PS S T+PS +PS Y +P + T+PSY P Sbjct: 1089 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1147 Query: 799 ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629 TP + +PT P ++ P+SP S S +P Y SPSY Sbjct: 1148 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1202 Query: 628 SVPAMSPS 605 + PA SPS Sbjct: 1203 ASPAYSPS 1210 Score = 62.0 bits (149), Expect = 1e-06 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%) Frame = -2 Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899 M P SP+ A A + P Y P+ ++ + +P +SP Y Sbjct: 909 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 963 Query: 898 SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740 P+ + T+PS T PSY +PS + T+P+Y P +PT+ +PT P ++ P+S Sbjct: 964 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1022 Query: 739 PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 P S + T +P+Y SPSY + P SPS Sbjct: 1023 PSYSPTSPT----DSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1063 Score = 60.8 bits (146), Expect = 2e-06 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + ++P P SPT +PT P P Y P++P S T Sbjct: 1064 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1123 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776 +PS SP Y PS S +P TP+ Y +P+ + T+P+Y P +P S Sbjct: 1124 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1182 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 +P P + SP S S +P+Y SP Y + P SP+ Sbjct: 1183 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1238 >XP_641735.1 RNA polymerase II largest subunit [Dictyostelium discoideum AX4] P35084.2 RecName: Full=DNA-directed RNA polymerase II subunit rpb1; Short=RNA polymerase II subunit B1; AltName: Full=DNA-directed RNA polymerase III subunit A EAL67745.1 RNA polymerase II largest subunit [Dictyostelium discoideum AX4] Length = 1727 Score = 77.0 bits (188), Expect = 2e-11 Identities = 57/175 (32%), Positives = 78/175 (44%), Gaps = 3/175 (1%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929 SPT + T+P P SPT +PT P Y P++P S T Sbjct: 1550 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPFYSPTSPS 1608 Query: 928 TAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPP 758 +P+ SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ S +P+ P Sbjct: 1609 YSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1667 Query: 757 FNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSDFPF 593 + SP T ++P+Y SPSY S P+ SPS F Sbjct: 1668 TSPSYSPTSPSYSPTSPSYSP--------SSPSYSPSSPSYSPSSPSYSPSSPTF 1714 >BAO20842.1 RNA polymerase II largest subunit, partial [Daphnia pulicaria] Length = 1764 Score = 77.0 bits (188), Expect = 2e-11 Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%) Frame = -2 Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941 MSP + +P M P ++ SP A T+P+M P Y P++P S T Sbjct: 1549 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1606 Query: 940 XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770 +P+ SP Y PS S T+P+ T+PSY +PS + T+PSY P +PT S +P Sbjct: 1607 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1665 Query: 769 TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 + P + PS S S ++P+Y SPSY + P+ SPS Sbjct: 1666 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1719 Score = 73.6 bits (179), Expect = 2e-10 Identities = 55/177 (31%), Positives = 77/177 (43%), Gaps = 9/177 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP A T+P M P SPT +PT P P Y P++P S T Sbjct: 1566 SPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSY 1625 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776 +P+ SP Y PS S T+PS T+P+Y +PS + ++PSY P +P+ S Sbjct: 1626 SPTSPTYSPT-SPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPT 1684 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 +P+ P PS S S ++P Y +SP+Y S P SP+ Sbjct: 1685 SPSYSP-TSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPT 1740 Score = 73.2 bits (178), Expect = 3e-10 Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP + T+P P SPT +PT P P Y P++P S T Sbjct: 1594 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1653 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776 +PS SP Y PS S T+PS T+PSY +PS + ++PSY P +P+ S Sbjct: 1654 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1710 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608 PT P ++ PSSPQ S +PAY SP Y + P+ SP Sbjct: 1711 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1746 Score = 62.0 bits (149), Expect = 1e-06 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%) Frame = -2 Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899 M P SP+ A A + P Y P+ ++ + +P +SP Y Sbjct: 1509 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 1563 Query: 898 SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740 P+ + T+PS T PSY +PS + T+P+Y P +PT+ +PT P ++ P+S Sbjct: 1564 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1622 Query: 739 PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 P S + T +P+Y SPSY + P SPS Sbjct: 1623 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1663 >JAN50643.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna] Length = 1865 Score = 77.0 bits (188), Expect = 2e-11 Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%) Frame = -2 Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941 MSP + +P M P ++ SP A T+P+M P Y P++P S T Sbjct: 1541 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1598 Query: 940 XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770 +P+ SP Y PS S T+P+ T+PSY +PS + T+PSY P +PT S +P Sbjct: 1599 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1657 Query: 769 TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 + P + PS S S ++P+Y SPSY + P+ SPS Sbjct: 1658 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1711 Score = 73.2 bits (178), Expect = 3e-10 Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP + T+P P SPT +PT P P Y P++P S T Sbjct: 1586 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1645 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776 +PS SP Y PS S T+PS T+PSY +PS + ++PSY P +P+ S Sbjct: 1646 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1702 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608 PT P ++ PSSPQ S +PAY SP Y + P+ SP Sbjct: 1703 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1738 Score = 68.9 bits (167), Expect = 6e-09 Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SPT + T+P P SPT +PT P P Y PS+P S T Sbjct: 1621 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1680 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800 +PS SP Y PS S T+PS +PS Y +P + T+PSY P Sbjct: 1681 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1739 Query: 799 ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629 TP + +PT P ++ P+SP S S +P Y SPSY Sbjct: 1740 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1794 Query: 628 SVPAMSPS 605 + PA SPS Sbjct: 1795 ASPAYSPS 1802 Score = 62.0 bits (149), Expect = 1e-06 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%) Frame = -2 Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899 M P SP+ A A + P Y P+ ++ + +P +SP Y Sbjct: 1501 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 1555 Query: 898 SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740 P+ + T+PS T PSY +PS + T+P+Y P +PT+ +PT P ++ P+S Sbjct: 1556 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1614 Query: 739 PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 P S + T +P+Y SPSY + P SPS Sbjct: 1615 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1655 Score = 60.8 bits (146), Expect = 2e-06 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + ++P P SPT +PT P P Y P++P S T Sbjct: 1656 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1715 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776 +PS SP Y PS S +P TP+ Y +P+ + T+P+Y P +P S Sbjct: 1716 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1774 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 +P P + SP S S +P+Y SP Y + P SP+ Sbjct: 1775 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1830 >JAN64786.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna] Length = 1895 Score = 77.0 bits (188), Expect = 2e-11 Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%) Frame = -2 Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941 MSP + +P M P ++ SP A T+P+M P Y P++P S T Sbjct: 1571 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1628 Query: 940 XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770 +P+ SP Y PS S T+P+ T+PSY +PS + T+PSY P +PT S +P Sbjct: 1629 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1687 Query: 769 TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 + P + PS S S ++P+Y SPSY + P+ SPS Sbjct: 1688 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1741 Score = 73.2 bits (178), Expect = 3e-10 Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP + T+P P SPT +PT P P Y P++P S T Sbjct: 1616 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1675 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776 +PS SP Y PS S T+PS T+PSY +PS + ++PSY P +P+ S Sbjct: 1676 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1732 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608 PT P ++ PSSPQ S +PAY SP Y + P+ SP Sbjct: 1733 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1768 Score = 68.9 bits (167), Expect = 6e-09 Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SPT + T+P P SPT +PT P P Y PS+P S T Sbjct: 1651 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1710 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800 +PS SP Y PS S T+PS +PS Y +P + T+PSY P Sbjct: 1711 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1769 Query: 799 ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629 TP + +PT P ++ P+SP S S +P Y SPSY Sbjct: 1770 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1824 Query: 628 SVPAMSPS 605 + PA SPS Sbjct: 1825 ASPAYSPS 1832 Score = 62.0 bits (149), Expect = 1e-06 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%) Frame = -2 Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899 M P SP+ A A + P Y P+ ++ + +P +SP Y Sbjct: 1531 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 1585 Query: 898 SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740 P+ + T+PS T PSY +PS + T+P+Y P +PT+ +PT P ++ P+S Sbjct: 1586 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1644 Query: 739 PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 P S + T +P+Y SPSY + P SPS Sbjct: 1645 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1685 Score = 60.8 bits (146), Expect = 2e-06 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + ++P P SPT +PT P P Y P++P S T Sbjct: 1686 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1745 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776 +PS SP Y PS S +P TP+ Y +P+ + T+P+Y P +P S Sbjct: 1746 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1804 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 +P P + SP S S +P+Y SP Y + P SP+ Sbjct: 1805 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1860 >JAN53042.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna] JAN53043.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna] Length = 1895 Score = 77.0 bits (188), Expect = 2e-11 Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%) Frame = -2 Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941 MSP + +P M P ++ SP A T+P+M P Y P++P S T Sbjct: 1571 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1628 Query: 940 XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770 +P+ SP Y PS S T+P+ T+PSY +PS + T+PSY P +PT S +P Sbjct: 1629 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1687 Query: 769 TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 + P + PS S S ++P+Y SPSY + P+ SPS Sbjct: 1688 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1741 Score = 73.2 bits (178), Expect = 3e-10 Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP + T+P P SPT +PT P P Y P++P S T Sbjct: 1616 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1675 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776 +PS SP Y PS S T+PS T+PSY +PS + ++PSY P +P+ S Sbjct: 1676 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1732 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608 PT P ++ PSSPQ S +PAY SP Y + P+ SP Sbjct: 1733 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1768 Score = 68.9 bits (167), Expect = 6e-09 Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SPT + T+P P SPT +PT P P Y PS+P S T Sbjct: 1651 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1710 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800 +PS SP Y PS S T+PS +PS Y +P + T+PSY P Sbjct: 1711 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1769 Query: 799 ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629 TP + +PT P ++ P+SP S S +P Y SPSY Sbjct: 1770 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1824 Query: 628 SVPAMSPS 605 + PA SPS Sbjct: 1825 ASPAYSPS 1832 Score = 61.2 bits (147), Expect = 2e-06 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 7/157 (4%) Frame = -2 Query: 1054 SPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSN 875 SP+ A A + P Y P+ ++ + +P +SP Y P+ + Sbjct: 1539 SPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYSPSSPAYAP 1593 Query: 874 TAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSSPQKSMSQE 716 T+PS T PSY +PS + T+P+Y P +PT+ +PT P ++ P+SP S + Sbjct: 1594 TSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTSPSYSPTSP 1652 Query: 715 TXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 T +P+Y SPSY + P SPS Sbjct: 1653 T----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1685 Score = 60.8 bits (146), Expect = 2e-06 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + ++P P SPT +PT P P Y P++P S T Sbjct: 1686 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1745 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776 +PS SP Y PS S +P TP+ Y +P+ + T+P+Y P +P S Sbjct: 1746 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1804 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 +P P + SP S S +P+Y SP Y + P SP+ Sbjct: 1805 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1860 >JAN42539.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna] JAN44046.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna] JAN45443.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna] JAN46894.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna] JAN46895.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna] JAN48591.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna] JAN48592.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna] JAN62288.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna] Length = 1895 Score = 77.0 bits (188), Expect = 2e-11 Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%) Frame = -2 Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941 MSP + +P M P ++ SP A T+P+M P Y P++P S T Sbjct: 1571 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1628 Query: 940 XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770 +P+ SP Y PS S T+P+ T+PSY +PS + T+PSY P +PT S +P Sbjct: 1629 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1687 Query: 769 TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 + P + PS S S ++P+Y SPSY + P+ SPS Sbjct: 1688 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1741 Score = 73.2 bits (178), Expect = 3e-10 Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP + T+P P SPT +PT P P Y P++P S T Sbjct: 1616 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1675 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776 +PS SP Y PS S T+PS T+PSY +PS + ++PSY P +P+ S Sbjct: 1676 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1732 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608 PT P ++ PSSPQ S +PAY SP Y + P+ SP Sbjct: 1733 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1768 Score = 68.9 bits (167), Expect = 6e-09 Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SPT + T+P P SPT +PT P P Y PS+P S T Sbjct: 1651 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1710 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800 +PS SP Y PS S T+PS +PS Y +P + T+PSY P Sbjct: 1711 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1769 Query: 799 ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629 TP + +PT P ++ P+SP S S +P Y SPSY Sbjct: 1770 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1824 Query: 628 SVPAMSPS 605 + PA SPS Sbjct: 1825 ASPAYSPS 1832 Score = 62.0 bits (149), Expect = 1e-06 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%) Frame = -2 Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899 M P SP+ A A + P Y P+ ++ + +P +SP Y Sbjct: 1531 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 1585 Query: 898 SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740 P+ + T+PS T PSY +PS + T+P+Y P +PT+ +PT P ++ P+S Sbjct: 1586 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1644 Query: 739 PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 P S + T +P+Y SPSY + P SPS Sbjct: 1645 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1685 Score = 60.8 bits (146), Expect = 2e-06 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + ++P P SPT +PT P P Y P++P S T Sbjct: 1686 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1745 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776 +PS SP Y PS S +P TP+ Y +P+ + T+P+Y P +P S Sbjct: 1746 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1804 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 +P P + SP S S +P+Y SP Y + P SP+ Sbjct: 1805 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1860 >EFX75312.1 hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex] Length = 1895 Score = 77.0 bits (188), Expect = 2e-11 Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%) Frame = -2 Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941 MSP + +P M P ++ SP A T+P+M P Y P++P S T Sbjct: 1571 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1628 Query: 940 XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770 +P+ SP Y PS S T+P+ T+PSY +PS + T+PSY P +PT S +P Sbjct: 1629 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1687 Query: 769 TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 + P + PS S S ++P+Y SPSY + P+ SPS Sbjct: 1688 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1741 Score = 73.2 bits (178), Expect = 3e-10 Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP + T+P P SPT +PT P P Y P++P S T Sbjct: 1616 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1675 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776 +PS SP Y PS S T+PS T+PSY +PS + ++PSY P +P+ S Sbjct: 1676 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1732 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608 PT P ++ PSSPQ S +PAY SP Y + P+ SP Sbjct: 1733 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1768 Score = 68.9 bits (167), Expect = 6e-09 Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SPT + T+P P SPT +PT P P Y PS+P S T Sbjct: 1651 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1710 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800 +PS SP Y PS S T+PS +PS Y +P + T+PSY P Sbjct: 1711 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1769 Query: 799 ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629 TP + +PT P ++ P+SP S S +P Y SPSY Sbjct: 1770 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1824 Query: 628 SVPAMSPS 605 + PA SPS Sbjct: 1825 ASPAYSPS 1832 Score = 62.0 bits (149), Expect = 1e-06 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%) Frame = -2 Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899 M P SP+ A A + P Y P+ ++ + +P +SP Y Sbjct: 1531 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 1585 Query: 898 SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740 P+ + T+PS T PSY +PS + T+P+Y P +PT+ +PT P ++ P+S Sbjct: 1586 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1644 Query: 739 PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 P S + T +P+Y SPSY + P SPS Sbjct: 1645 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1685 Score = 60.8 bits (146), Expect = 2e-06 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + ++P P SPT +PT P P Y P++P S T Sbjct: 1686 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1745 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776 +PS SP Y PS S +P TP+ Y +P+ + T+P+Y P +P S Sbjct: 1746 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1804 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 +P P + SP S S +P+Y SP Y + P SP+ Sbjct: 1805 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1860 >XP_014221062.1 PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Trichogramma pretiosum] Length = 1920 Score = 77.0 bits (188), Expect = 2e-11 Identities = 57/180 (31%), Positives = 77/180 (42%), Gaps = 12/180 (6%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + T+P P SPT +PT P P Y P++PI S T Sbjct: 1664 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPIYSPTSPSYSP----- 1718 Query: 946 XXXXSVTAPS---VSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTA 785 T+PS SP Y PS S T+PS T+PSY +PS + T+PSY P +P Sbjct: 1719 ------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 1772 Query: 784 SVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 + +P+ P + SP T +P Y SPSY + P+ SPS Sbjct: 1773 TPASPSYSPSSPNYSPTSPSYSPTSPSFAGGTPPRYTPTSPTYSPTSPSYSPTSPSYSPS 1832 Score = 71.6 bits (174), Expect = 9e-10 Identities = 56/181 (30%), Positives = 82/181 (45%), Gaps = 9/181 (4%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + T+P P SPT +PT P P Y P++P S T Sbjct: 1636 SPSYSPTSPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1695 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776 +P+ SP+Y PS S T+PS T+PSY +PS + T+PSY P +P+ S Sbjct: 1696 SPTSPSYSPT-SPIYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-- 1752 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSDFP 596 PT P ++ P+SP S + +P+Y SP+Y + P+ SP+ Sbjct: 1753 -PTSPSYS-PTSPSYSPTSPNYTPA-----------SPSYSPSSPNYSPTSPSYSPTSPS 1799 Query: 595 F 593 F Sbjct: 1800 F 1800 Score = 66.6 bits (161), Expect = 4e-08 Identities = 53/178 (29%), Positives = 78/178 (43%), Gaps = 10/178 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929 SP+ + T+P P SPT + +PT P Y P++P S T Sbjct: 1685 SPSYSPTSPSYSPTSPSYSPTSPIYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1743 Query: 928 TAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTM-- 764 +P+ SP Y PS S T+PS T+P+Y +PS + ++P+Y P +P+ S +P+ Sbjct: 1744 YSPT-SPSYSPTSPSYSPTSPSYSPTSPNYTPASPSYSPSSPNYSPTSPSYSPTSPSFAG 1802 Query: 763 --PPFNKPSSPQ---KSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 PP P+SP S S A + Y SP+Y + P SPS Sbjct: 1803 GTPPRYTPTSPTYSPTSPSYSPTSPSYSPSSPQHSAISTNYSPSSPNYSPTSPTYSPS 1860 Score = 66.2 bits (160), Expect = 5e-08 Identities = 57/183 (31%), Positives = 76/183 (41%), Gaps = 16/183 (8%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + T+P P SPT +PT P P Y P++P S T Sbjct: 1713 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 1772 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS----TTPSYKSVAPSKAVTAPSYKPLTPTASV 779 +PS SP Y PS S T+PS T P Y +P+ + T+PSY P +P+ S Sbjct: 1773 TPASPSYSPS-SPNYSPTSPSYSPTSPSFAGGTPPRYTPTSPTYSPTSPSYSPTSPSYSP 1831 Query: 778 MTPTMPPFN---KPSSPQKSMSQETXXXXXXXXXXXXPANAPA---YVTKSPSYPSSVPA 617 +P + PSSP S + T P +P Y SPSY + PA Sbjct: 1832 SSPQHSAISTNYSPSSPNYSPTSPTYSPSSTRYSPTSPTYSPPSFNYSPTSPSYSPTSPA 1891 Query: 616 MSP 608 SP Sbjct: 1892 YSP 1894 Score = 65.1 bits (157), Expect = 1e-07 Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 9/179 (5%) Frame = -2 Query: 1114 YMSP--TKAVTAPIMPPFHNY-MSPTKAVTAP---TMPPLYKPSAPIKSFTXXXXXXXXX 953 YMSP T +P+ P ++Y SP++ ++ T P Y PS+P T Sbjct: 1571 YMSPAGTSPRYSPMSPSGYSYPASPSRTPSSDHYSTASPNYSPSSPKYVPTSPSYSPTSP 1630 Query: 952 XXXXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTAS 782 +P+ SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ Sbjct: 1631 SYSPTSPSYSPT-SPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-- 1687 Query: 781 VMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 +PT P ++ P+SP S + +P+Y SPSY + P+ SP+ Sbjct: 1688 -YSPTSPSYS-PTSPSYSPTS-----------PIYSPTSPSYSPTSPSYSPTSPSYSPT 1733 >JAN40900.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna] Length = 1930 Score = 77.0 bits (188), Expect = 2e-11 Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%) Frame = -2 Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941 MSP + +P M P ++ SP A T+P+M P Y P++P S T Sbjct: 1606 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1663 Query: 940 XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770 +P+ SP Y PS S T+P+ T+PSY +PS + T+PSY P +PT S +P Sbjct: 1664 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1722 Query: 769 TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 + P + PS S S ++P+Y SPSY + P+ SPS Sbjct: 1723 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1776 Score = 73.2 bits (178), Expect = 3e-10 Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP + T+P P SPT +PT P P Y P++P S T Sbjct: 1651 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1710 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776 +PS SP Y PS S T+PS T+PSY +PS + ++PSY P +P+ S Sbjct: 1711 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1767 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608 PT P ++ PSSPQ S +PAY SP Y + P+ SP Sbjct: 1768 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1803 Score = 68.9 bits (167), Expect = 6e-09 Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SPT + T+P P SPT +PT P P Y PS+P S T Sbjct: 1686 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1745 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800 +PS SP Y PS S T+PS +PS Y +P + T+PSY P Sbjct: 1746 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1804 Query: 799 ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629 TP + +PT P ++ P+SP S S +P Y SPSY Sbjct: 1805 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1859 Query: 628 SVPAMSPS 605 + PA SPS Sbjct: 1860 ASPAYSPS 1867 Score = 62.0 bits (149), Expect = 1e-06 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%) Frame = -2 Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899 M P SP+ A A + P Y P+ ++ + +P +SP Y Sbjct: 1566 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 1620 Query: 898 SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740 P+ + T+PS T PSY +PS + T+P+Y P +PT+ +PT P ++ P+S Sbjct: 1621 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1679 Query: 739 PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 P S + T +P+Y SPSY + P SPS Sbjct: 1680 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1720 Score = 60.8 bits (146), Expect = 2e-06 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + ++P P SPT +PT P P Y P++P S T Sbjct: 1721 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1780 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776 +PS SP Y PS S +P TP+ Y +P+ + T+P+Y P +P S Sbjct: 1781 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1839 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 +P P + SP S S +P+Y SP Y + P SP+ Sbjct: 1840 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1895 >JAN74022.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna] Length = 1936 Score = 77.0 bits (188), Expect = 2e-11 Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%) Frame = -2 Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941 MSP + +P M P ++ SP A T+P+M P Y P++P S T Sbjct: 1612 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1669 Query: 940 XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770 +P+ SP Y PS S T+P+ T+PSY +PS + T+PSY P +PT S +P Sbjct: 1670 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1728 Query: 769 TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 + P + PS S S ++P+Y SPSY + P+ SPS Sbjct: 1729 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1782 Score = 73.2 bits (178), Expect = 3e-10 Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP + T+P P SPT +PT P P Y P++P S T Sbjct: 1657 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1716 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776 +PS SP Y PS S T+PS T+PSY +PS + ++PSY P +P+ S Sbjct: 1717 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1773 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608 PT P ++ PSSPQ S +PAY SP Y + P+ SP Sbjct: 1774 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1809 Score = 68.9 bits (167), Expect = 6e-09 Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SPT + T+P P SPT +PT P P Y PS+P S T Sbjct: 1692 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1751 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800 +PS SP Y PS S T+PS +PS Y +P + T+PSY P Sbjct: 1752 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1810 Query: 799 ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629 TP + +PT P ++ P+SP S S +P Y SPSY Sbjct: 1811 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1865 Query: 628 SVPAMSPS 605 + PA SPS Sbjct: 1866 ASPAYSPS 1873 Score = 62.0 bits (149), Expect = 1e-06 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%) Frame = -2 Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899 M P SP+ A A + P Y P+ ++ + +P +SP Y Sbjct: 1572 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 1626 Query: 898 SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740 P+ + T+PS T PSY +PS + T+P+Y P +PT+ +PT P ++ P+S Sbjct: 1627 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1685 Query: 739 PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 P S + T +P+Y SPSY + P SPS Sbjct: 1686 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1726 Score = 60.8 bits (146), Expect = 2e-06 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ + ++P P SPT +PT P P Y P++P S T Sbjct: 1727 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1786 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776 +PS SP Y PS S +P TP+ Y +P+ + T+P+Y P +P S Sbjct: 1787 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1845 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 +P P + SP S S +P+Y SP Y + P SP+ Sbjct: 1846 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1901 >JAN55944.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna] Length = 1273 Score = 76.6 bits (187), Expect = 2e-11 Identities = 57/175 (32%), Positives = 81/175 (46%), Gaps = 6/175 (3%) Frame = -2 Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941 MSP + +P M P ++ SP A T+P+M P Y P++P S T Sbjct: 949 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1006 Query: 940 XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770 +P+ SP Y PS S T+P+ T+PSY +PS + T+PSY P +PT S +P Sbjct: 1007 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1065 Query: 769 TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 + P PS S S ++P+Y SPSY + P+ SPS Sbjct: 1066 SCKP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1119 Score = 73.9 bits (180), Expect = 1e-10 Identities = 59/176 (33%), Positives = 78/176 (44%), Gaps = 9/176 (5%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP + T+P P SPT +PT P P Y P++P S T Sbjct: 994 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1053 Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776 +PS SP K PS S T+PS T+PSY +PS + ++PSY P +P+ S Sbjct: 1054 SPTSPTYSPS-SPSCKPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1110 Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608 PT P ++ PSSPQ S +PAY SP YP + P+ SP Sbjct: 1111 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYPPTSPSYSP 1146 Score = 62.0 bits (149), Expect = 1e-06 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%) Frame = -2 Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899 M P SP+ A A + P Y P+ ++ + +P +SP Y Sbjct: 909 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 963 Query: 898 SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740 P+ + T+PS T PSY +PS + T+P+Y P +PT+ +PT P ++ P+S Sbjct: 964 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1022 Query: 739 PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605 P S + T +P+Y SPSY + P SPS Sbjct: 1023 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1063 Score = 59.3 bits (142), Expect = 7e-06 Identities = 49/186 (26%), Positives = 72/186 (38%), Gaps = 18/186 (9%) Frame = -2 Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947 SP+ T+P P SPT +PT P P Y P++P S T Sbjct: 1064 SPSCKPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1123 Query: 946 XXXXSVTAPS------VSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLT 794 +PS SP Y G P + +P T+P+Y +P+ + ++P Y P + Sbjct: 1124 SPRSPAYSPSSPKYPPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPTS 1183 Query: 793 PTASVMTPTMPPFN---KPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSV 623 P S +P P + P+SP S S +P+Y SP Y + Sbjct: 1184 PRYSPASPKYSPTSPSYSPASPAYSPSSPN-----------YSPTSPSYSPASPKYSPTS 1232 Query: 622 PAMSPS 605 P SP+ Sbjct: 1233 PTYSPA 1238