BLASTX nr result
ID: Ephedra29_contig00004998
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra29_contig00004998
(1121 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BAJ78675.1 RNA polymerase II largest subunit, partial [Metylopho... 80 2e-12
KZS06240.1 DNA-directed RNA polymerase [Daphnia magna] 78 3e-12
ELU15060.1 hypothetical protein CAPTEDRAFT_170227 [Capitella tel... 79 5e-12
XP_013419697.1 PREDICTED: DNA-directed RNA polymerase II subunit... 78 7e-12
XP_013401160.1 PREDICTED: DNA-directed RNA polymerase II subunit... 78 7e-12
BAJ52637.1 RNA polymerase II largest subunit, partial [Monosiga ... 78 8e-12
BAJ78650.1 RNA polymerase II largest subunit, partial [Isolepism... 78 9e-12
AAB24966.1 RNA polymerase II largest subunit, partial [Dictyoste... 77 1e-11
JAN55945.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ... 77 1e-11
XP_641735.1 RNA polymerase II largest subunit [Dictyostelium dis... 77 2e-11
BAO20842.1 RNA polymerase II largest subunit, partial [Daphnia p... 77 2e-11
JAN50643.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ... 77 2e-11
JAN64786.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ... 77 2e-11
JAN53042.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ... 77 2e-11
JAN42539.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ... 77 2e-11
EFX75312.1 hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex] 77 2e-11
XP_014221062.1 PREDICTED: DNA-directed RNA polymerase II subunit... 77 2e-11
JAN40900.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ... 77 2e-11
JAN74022.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ... 77 2e-11
JAN55944.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia ... 77 2e-11
>BAJ78675.1 RNA polymerase II largest subunit, partial [Metylophorus sp. E-43]
Length = 1792
Score = 80.1 bits (196), Expect = 2e-12
Identities = 61/180 (33%), Positives = 80/180 (44%), Gaps = 12/180 (6%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SPT A T+P M P SPT +PT P P Y P++P S T
Sbjct: 1592 SPTYAPTSPSMSPASPNYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSP----- 1646
Query: 946 XXXXSVTAPS---VSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTA 785
T+PS SP Y PS S T+PS T+PSY +PS + T+PSY P +P+
Sbjct: 1647 ------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1700
Query: 784 SVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
S +P+ P PS S S ++P Y +SPSY + P+ SPS
Sbjct: 1701 SPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPQSPSYSPTSPSYSPS 1759
Score = 73.2 bits (178), Expect = 3e-10
Identities = 55/177 (31%), Positives = 79/177 (44%), Gaps = 9/177 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + T+P P SPT +PT P P Y P++P S T
Sbjct: 1613 SPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1672
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
+P+ SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ S
Sbjct: 1673 SPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1731
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+P+ P + +PQ T PA +P+Y SP Y + P+ SP+
Sbjct: 1732 SPSYSPSSPNYTPQSPSYSPTSPSYSPSSPRYSPA-SPSYSPSSPKYSPTSPSYSPT 1787
Score = 72.8 bits (177), Expect = 4e-10
Identities = 55/167 (32%), Positives = 76/167 (45%), Gaps = 9/167 (5%)
Frame = -2
Query: 1078 MPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPS--- 917
+ P ++ SPT A T+P+M P Y P++P S T T+PS
Sbjct: 1584 LSPSYSPSSPTYAPTSPSMSPASPNYSPTSPSYSPTSPNYSP-----------TSPSYSP 1632
Query: 916 VSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNKP 746
SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ S +P+ P P
Sbjct: 1633 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSP 1691
Query: 745 SSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
S S S +P+Y SPSY + P+ SPS
Sbjct: 1692 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPS 1738
Score = 68.9 bits (167), Expect = 6e-09
Identities = 53/171 (30%), Positives = 76/171 (44%), Gaps = 12/171 (7%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + T+P P SPT +PT P P Y P++P S T
Sbjct: 1627 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1686
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
+P+ SP Y PS S T+PS T+PSY +PS + T+PSY P +P +
Sbjct: 1687 SPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPQ 1745
Query: 775 TPTMPPFN---KPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYP 632
+P+ P + PSSP+ S + + +P+Y SPSYP
Sbjct: 1746 SPSYSPTSPSYSPSSPRYSPASPSYSPSSPKYSP----TSPSYSPTSPSYP 1792
>KZS06240.1 DNA-directed RNA polymerase [Daphnia magna]
Length = 436
Score = 78.2 bits (191), Expect = 3e-12
Identities = 56/168 (33%), Positives = 77/168 (45%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929
SP A T+P+M P SPT +PT P Y P++P S T
Sbjct: 129 SPAYAPTSPLMTPSSPSYSPTSPSYSPTSPN-YSPTSPGYSPTSPSYSP----------- 176
Query: 928 TAPSVSPMYKSGLPSKSNTAPSTTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNK 749
T+PS SP S P+ +P T+PSY +PS + T+PSY P +PT S +P+ P +
Sbjct: 177 TSPSYSPTSPSYSPTSPTYSP-TSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSP-SS 234
Query: 748 PSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
PS S S ++P+Y SPSY + P+ SPS
Sbjct: 235 PSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 282
Score = 73.2 bits (178), Expect = 1e-10
Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP + T+P P SPT +PT P P Y P++P S T
Sbjct: 157 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 216
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
+PS SP Y PS S T+PS T+PSY +PS + ++PSY P +P+ S
Sbjct: 217 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 273
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608
PT P ++ PSSPQ S +PAY SP Y + P+ SP
Sbjct: 274 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 309
Score = 68.9 bits (167), Expect = 3e-09
Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SPT + T+P P SPT +PT P P Y PS+P S T
Sbjct: 192 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 251
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800
+PS SP Y PS S T+PS +PS Y +P + T+PSY P
Sbjct: 252 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 310
Query: 799 ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629
TP + +PT P ++ P+SP S S +P Y SPSY
Sbjct: 311 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 365
Query: 628 SVPAMSPS 605
+ PA SPS
Sbjct: 366 ASPAYSPS 373
Score = 60.8 bits (146), Expect = 1e-06
Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + ++P P SPT +PT P P Y P++P S T
Sbjct: 227 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 286
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776
+PS SP Y PS S +P TP+ Y +P+ + T+P+Y P +P S
Sbjct: 287 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 345
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+P P + SP S S +P+Y SP Y + P SP+
Sbjct: 346 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 401
Score = 59.7 bits (143), Expect = 3e-06
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 7/165 (4%)
Frame = -2
Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899
M P SP+ A A + P Y P+ ++ + +P +SP Y
Sbjct: 72 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 126
Query: 898 SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740
P+ + T+P T PSY +PS + T+P+Y P +PT+ +PT P ++ P+S
Sbjct: 127 PSSPAYAPTSPLMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 185
Query: 739 PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
P S + T +P+Y SPSY + P SPS
Sbjct: 186 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 226
>ELU15060.1 hypothetical protein CAPTEDRAFT_170227 [Capitella teleta]
Length = 1916
Score = 78.6 bits (192), Expect = 5e-12
Identities = 57/177 (32%), Positives = 80/177 (45%), Gaps = 9/177 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + T+P PP SPT +PT P P Y P++P S T
Sbjct: 1584 SPSYSPTSPSYPPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1643
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
+P+ SP Y PS S T+PS T+PSY +PS + T+P+Y P +P+ S
Sbjct: 1644 SPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPT 1702
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+P+ P + SPQ S S +P+Y SPSY + P+ SPS
Sbjct: 1703 SPSYSPTSPNYSPQ-SPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPTSPSYSPS 1758
Score = 74.3 bits (181), Expect = 1e-10
Identities = 57/180 (31%), Positives = 80/180 (44%), Gaps = 12/180 (6%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + T+P P SPT +PT P P Y P++P S T
Sbjct: 1598 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1657
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
+P+ SP Y PS S T+PS T+P+Y +PS + T+PSY P +P S
Sbjct: 1658 SPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPNYSPQ 1716
Query: 775 TPTMPPFN---KPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+P+ P + PSSP+ S + + +P+Y SPSY S P SPS
Sbjct: 1717 SPSYSPTSPSYSPSSPKYSPTSPS-----------YSPTSPSYSPTSPSYSPSSPQYSPS 1765
Score = 72.8 bits (177), Expect = 4e-10
Identities = 58/177 (32%), Positives = 80/177 (45%), Gaps = 9/177 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + T+P P SPT +PT P P Y P++P S T
Sbjct: 1640 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSY 1699
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776
+P+ SP Y PS S T+PS +PS Y +PS + T+PSY P +P+ S
Sbjct: 1700 SPTSPSYSPT-SPNYSPQSPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPTSPSYS-- 1756
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
P+ P ++ PSSPQ S + +N+P Y SP Y S P+ SPS
Sbjct: 1757 -PSSPQYS-PSSPQYSPA----------------SNSPQYTPASPHYSPSSPSYSPS 1795
Score = 60.8 bits (146), Expect = 2e-06
Identities = 50/183 (27%), Positives = 74/183 (40%), Gaps = 15/183 (8%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + T+P P SPT +PT P P Y PS+P ++
Sbjct: 1717 SPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPTSPSYSPSSP--QYSPSSPQYSPASN 1774
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS------TTPSYKSVAPSKAVTAPSYKPLTPTA 785
+ +P SP S PS +PS T+P Y +P + ++P Y P +P
Sbjct: 1775 SPQYTPASPHYSPSSPSYSPSSPQYSPSSPSYTPTSPKYSPSSPDYSPSSPQYSPASPQY 1834
Query: 784 SVMTPTMPPFN---KPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAM 614
S +P P + PSSPQ S + + +P+Y SP Y + PA
Sbjct: 1835 SPGSPDYSPNSPSYSPSSPQYSPASPSYSPTSPKYSP----ESPSYSPSSPKYSPTSPAY 1890
Query: 613 SPS 605
SP+
Sbjct: 1891 SPT 1893
Score = 60.5 bits (145), Expect = 3e-06
Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 14/182 (7%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPF-HNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXS 932
SP+ + +P M P+ H+ +P A + P Y PS+P S
Sbjct: 1503 SPSSNMGSPQMTPWGHDQSTPIPVGGANS--PSYSPSSPSFMPASPATPHSPAYSPQSYS 1560
Query: 931 VTAPSVSPM---YKSGLPSKSNTAPS----------TTPSYKSVAPSKAVTAPSYKPLTP 791
+PS SP Y P+ S T+PS T+PSY +PS + T+PSY P +P
Sbjct: 1561 PASPSYSPGSAGYSPSSPNFSPTSPSYSPTSPSYPPTSPSYSPTSPSYSPTSPSYSPTSP 1620
Query: 790 TASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMS 611
+ S +P+ P PS S S +P+Y SPSY + P+ S
Sbjct: 1621 SYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1679
Query: 610 PS 605
P+
Sbjct: 1680 PT 1681
>XP_013419697.1 PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
X1 [Lingula anatina] XP_013419698.1 PREDICTED:
DNA-directed RNA polymerase II subunit RPB1-like isoform
X2 [Lingula anatina]
Length = 1939
Score = 78.2 bits (191), Expect = 7e-12
Identities = 58/175 (33%), Positives = 78/175 (44%), Gaps = 3/175 (1%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929
SPT + T+P P SPT +PT P Y P++P S T
Sbjct: 1619 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1677
Query: 928 TAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPP 758
+P+ SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ S +P+ P
Sbjct: 1678 YSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1736
Query: 757 FNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSDFPF 593
PS S S ++P+Y SPSY S P+ SPS F
Sbjct: 1737 -TSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPTSPSYSPSSPSYSPSSPKF 1790
Score = 74.3 bits (181), Expect = 1e-10
Identities = 57/174 (32%), Positives = 77/174 (44%), Gaps = 6/174 (3%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929
SP+ + T+P P SPT +PT P Y P++P S T
Sbjct: 1598 SPSYSPTSPSYSPSSPGYSPTSPTYSPTSPS-YSPTSPSYSPTSPSYSP----------- 1645
Query: 928 TAPS---VSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPT 767
T+PS SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ S +P+
Sbjct: 1646 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705
Query: 766 MPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
P PS S S +P+Y SPSY + P+ SPS
Sbjct: 1706 YSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPS 1758
Score = 67.8 bits (164), Expect = 2e-08
Identities = 57/188 (30%), Positives = 76/188 (40%), Gaps = 20/188 (10%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + T+P P SPT +PT P P Y PS+P S T
Sbjct: 1724 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPTSPSYSPSSPSY 1783
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS----------TTPSYKSVAPSKAVTAPSYKPL 797
+P+ SP Y PS S ++P T+P Y +PS + T+P Y P
Sbjct: 1784 SPSSPKFSPA-SPSYSPTSPSYSPSSPQYSPSSPQYTPTSPKYSPTSPSYSPTSPKYSPA 1842
Query: 796 ----TPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629
TPT+ TPT P ++ PSSPQ S S +P Y SP Y
Sbjct: 1843 SPTYTPTSPKYTPTSPEYS-PSSPQYSPSSPKYSPA-----------SPTYSPTSPKYSP 1890
Query: 628 SVPAMSPS 605
+ P SP+
Sbjct: 1891 ASPTYSPT 1898
Score = 67.4 bits (163), Expect = 2e-08
Identities = 54/177 (30%), Positives = 76/177 (42%), Gaps = 9/177 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + T+P P SPT +PT P P Y P++P S T
Sbjct: 1689 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1748
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPSYKSVAPSKAVTAPSYKPLTPTASVMTPT 767
+PS SP Y PS S T+PS +PS S +PS +P+ +PT+ +P+
Sbjct: 1749 SPTSPSYSPS-SPSYSPSSPSYSPTSPSYSPSSPSYSPSSPKFSPASPSYSPTSPSYSPS 1807
Query: 766 MPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPA---YVTKSPSYPSSVPAMSPS 605
P ++ PSSPQ + + P +PA Y SP Y + P SPS
Sbjct: 1808 SPQYS-PSSPQYTPTSPKYSPTSPSYSPTSPKYSPASPTYTPTSPKYTPTSPEYSPS 1863
Score = 59.7 bits (143), Expect = 6e-06
Identities = 46/169 (27%), Positives = 69/169 (40%)
Frame = -2
Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXS 932
+SP A M P ++ SP+ ++P M P +P
Sbjct: 1565 ISPYIPSPAGAMSPSYSPASPSYIPSSPAMTPQSPSYSP--------------------- 1603
Query: 931 VTAPSVSPMYKSGLPSKSNTAPSTTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFN 752
T+PS SP P+ +P T+PSY +PS + T+PSY P +P+ S +P+ P
Sbjct: 1604 -TSPSYSPSSPGYSPTSPTYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-T 1660
Query: 751 KPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
PS S S +P+Y SPSY + P+ SP+
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1709
>XP_013401160.1 PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Lingula
anatina]
Length = 1939
Score = 78.2 bits (191), Expect = 7e-12
Identities = 58/175 (33%), Positives = 78/175 (44%), Gaps = 3/175 (1%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929
SPT + T+P P SPT +PT P Y P++P S T
Sbjct: 1619 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1677
Query: 928 TAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPP 758
+P+ SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ S +P+ P
Sbjct: 1678 YSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1736
Query: 757 FNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSDFPF 593
PS S S ++P+Y SPSY S P+ SPS F
Sbjct: 1737 -TSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPTSPSYSPSSPSYSPSSPKF 1790
Score = 74.3 bits (181), Expect = 1e-10
Identities = 57/174 (32%), Positives = 77/174 (44%), Gaps = 6/174 (3%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929
SP+ + T+P P SPT +PT P Y P++P S T
Sbjct: 1598 SPSYSPTSPSYSPSSPGYSPTSPTYSPTSPS-YSPTSPSYSPTSPSYSP----------- 1645
Query: 928 TAPS---VSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPT 767
T+PS SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ S +P+
Sbjct: 1646 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705
Query: 766 MPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
P PS S S +P+Y SPSY + P+ SPS
Sbjct: 1706 YSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPS 1758
Score = 67.8 bits (164), Expect = 2e-08
Identities = 57/188 (30%), Positives = 76/188 (40%), Gaps = 20/188 (10%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + T+P P SPT +PT P P Y PS+P S T
Sbjct: 1724 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPTSPSYSPSSPSY 1783
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS----------TTPSYKSVAPSKAVTAPSYKPL 797
+P+ SP Y PS S ++P T+P Y +PS + T+P Y P
Sbjct: 1784 SPSSPKFSPA-SPSYSPTSPSYSPSSPQYSPSSPQYTPTSPKYSPTSPSYSPTSPKYSPA 1842
Query: 796 ----TPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629
TPT+ TPT P ++ PSSPQ S S +P Y SP Y
Sbjct: 1843 SPTYTPTSPKYTPTSPEYS-PSSPQYSPSSPKYSPA-----------SPTYSPTSPKYSP 1890
Query: 628 SVPAMSPS 605
+ P SP+
Sbjct: 1891 ASPTYSPT 1898
Score = 67.4 bits (163), Expect = 2e-08
Identities = 54/177 (30%), Positives = 76/177 (42%), Gaps = 9/177 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + T+P P SPT +PT P P Y P++P S T
Sbjct: 1689 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1748
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPSYKSVAPSKAVTAPSYKPLTPTASVMTPT 767
+PS SP Y PS S T+PS +PS S +PS +P+ +PT+ +P+
Sbjct: 1749 SPTSPSYSPS-SPSYSPSSPSYSPTSPSYSPSSPSYSPSSPKFSPASPSYSPTSPSYSPS 1807
Query: 766 MPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPA---YVTKSPSYPSSVPAMSPS 605
P ++ PSSPQ + + P +PA Y SP Y + P SPS
Sbjct: 1808 SPQYS-PSSPQYTPTSPKYSPTSPSYSPTSPKYSPASPTYTPTSPKYTPTSPEYSPS 1863
Score = 59.7 bits (143), Expect = 6e-06
Identities = 46/169 (27%), Positives = 69/169 (40%)
Frame = -2
Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXS 932
+SP A M P ++ SP+ ++P M P +P
Sbjct: 1565 ISPYIPSPAGAMSPSYSPASPSYIPSSPAMTPQSPSYSP--------------------- 1603
Query: 931 VTAPSVSPMYKSGLPSKSNTAPSTTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFN 752
T+PS SP P+ +P T+PSY +PS + T+PSY P +P+ S +P+ P
Sbjct: 1604 -TSPSYSPSSPGYSPTSPTYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-T 1660
Query: 751 KPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
PS S S +P+Y SPSY + P+ SP+
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1709
>BAJ52637.1 RNA polymerase II largest subunit, partial [Monosiga ovata]
Length = 1289
Score = 77.8 bits (190), Expect = 8e-12
Identities = 59/182 (32%), Positives = 79/182 (43%), Gaps = 9/182 (4%)
Frame = -2
Query: 1114 YMSPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXX 953
+MSPT +P P + SPT +PT P P Y P++P S T
Sbjct: 1105 HMSPTSPKYSPTSPSY----SPTSPSYSPTSPKYSPTSPSYSPTSPSYSPTSPKYSPTSP 1160
Query: 952 XXXXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTAS 782
+P+ SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ S
Sbjct: 1161 SYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1219
Query: 781 VMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSD 602
+P+ P PS S S ++P Y SPSY S P+ SPS
Sbjct: 1220 PTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYSPSSPSYSPSSPSYSPSS 1278
Query: 601 FP 596
P
Sbjct: 1279 GP 1280
Score = 63.2 bits (152), Expect = 4e-07
Identities = 45/139 (32%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + T+P P SPT +PT P P Y P++P S T
Sbjct: 1145 SPSYSPTSPKYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1204
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
+P+ SP Y PS S T+PS T+PSY +PS + T+PSY P +P S
Sbjct: 1205 SPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYSPS 1263
Query: 775 TPTMPPFNKPSSPQKSMSQ 719
+P+ P + SP Q
Sbjct: 1264 SPSYSPSSPSYSPSSGPGQ 1282
>BAJ78650.1 RNA polymerase II largest subunit, partial [Isolepisma japonica]
Length = 1775
Score = 77.8 bits (190), Expect = 9e-12
Identities = 57/171 (33%), Positives = 76/171 (44%), Gaps = 3/171 (1%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929
SP A T+P M P SPT +PT P Y P++P S T
Sbjct: 1590 SPAYAPTSPSMTPASPNYSPTSPSYSPTSPK-YSPASPSYSPTSPSYSPTSPSYSPTSPS 1648
Query: 928 TAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPP 758
+P+ SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ S +P+ P
Sbjct: 1649 YSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1707
Query: 757 FNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
PS S S ++P Y SPSY + P+ SPS
Sbjct: 1708 -TSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPASPSYSPTSPSYSPS 1757
Score = 66.6 bits (161), Expect = 4e-08
Identities = 54/174 (31%), Positives = 78/174 (44%), Gaps = 6/174 (3%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXXX 938
SP A M P ++ SP A T+P+M P Y P++P S T
Sbjct: 1572 SPYVPSPAAGMSPSYSPSSPAYAPTSPSMTPASPNYSPTSPSYSPT-------------- 1617
Query: 937 XSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPT 767
SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ +PT
Sbjct: 1618 --------SPKYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS---YSPT 1666
Query: 766 MPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
P ++ P+SP S + + +P+Y SPSY + P+ SP+
Sbjct: 1667 SPSYS-PTSPSYSPTSPS-----------YSPTSPSYSPTSPSYSPTSPSYSPT 1708
Score = 63.2 bits (152), Expect = 5e-07
Identities = 52/167 (31%), Positives = 74/167 (44%), Gaps = 9/167 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + T+P P SPT +PT P P Y P++P S T
Sbjct: 1632 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1691
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
+P+ SP Y PS S T+PS T+PSY +PS + ++P+Y P +P+ S
Sbjct: 1692 SPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPASPSYS-- 1748
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSY 635
PT P ++ PSSPQ S + +P+Y SP Y
Sbjct: 1749 -PTSPSYS-PSSPQYSPA------------------SPSYSPSSPKY 1775
>AAB24966.1 RNA polymerase II largest subunit, partial [Dictyostelium discoideum]
Length = 902
Score = 77.0 bits (188), Expect = 1e-11
Identities = 57/175 (32%), Positives = 78/175 (44%), Gaps = 3/175 (1%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929
SPT + T+P P SPT +PT P Y P++P S T
Sbjct: 725 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPFYSPTSPS 783
Query: 928 TAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPP 758
+P+ SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ S +P+ P
Sbjct: 784 YSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 842
Query: 757 FNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSDFPF 593
+ SP T ++P+Y SPSY S P+ SPS F
Sbjct: 843 TSPSYSPTSPSYSPTSPSYSP--------SSPSYSPSSPSYSPSSPSYSPSSPTF 889
>JAN55945.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna]
Length = 1273
Score = 77.0 bits (188), Expect = 1e-11
Identities = 56/168 (33%), Positives = 76/168 (45%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929
SP A T+P M P SPT +PT P Y P++P S T
Sbjct: 966 SPAYAPTSPSMTPSSPSYSPTSPSYSPTSPN-YSPTSPGYSPTSPSYSP----------- 1013
Query: 928 TAPSVSPMYKSGLPSKSNTAPSTTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPPFNK 749
T+PS SP S P+ +P T+PSY +PS + T+PSY P +PT S +P+ P +
Sbjct: 1014 TSPSYSPTSPSYSPTSPTDSP-TSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSP-SS 1071
Query: 748 PSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
PS S S ++P+Y SPSY + P+ SPS
Sbjct: 1072 PSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1119
Score = 70.9 bits (172), Expect = 1e-09
Identities = 58/176 (32%), Positives = 78/176 (44%), Gaps = 9/176 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + T+P P SPT +PT P P Y P++P S T
Sbjct: 1008 SPSYSPTSPSYSPTSPSYSPTSPTDSPTSPSYSPTSPSYSPTSPSYSPTSPTY------- 1060
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
+PS SP Y PS S T+PS T+PSY +PS + ++PSY P +P+ S
Sbjct: 1061 -------SPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1110
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608
PT P ++ PSSPQ S +PAY SP Y + P+ SP
Sbjct: 1111 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1146
Score = 69.3 bits (168), Expect = 5e-09
Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SPT + T+P P SPT +PT P P Y PS+P S T
Sbjct: 1029 SPTDSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1088
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800
+PS SP Y PS S T+PS +PS Y +P + T+PSY P
Sbjct: 1089 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1147
Query: 799 ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629
TP + +PT P ++ P+SP S S +P Y SPSY
Sbjct: 1148 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1202
Query: 628 SVPAMSPS 605
+ PA SPS
Sbjct: 1203 ASPAYSPS 1210
Score = 62.0 bits (149), Expect = 1e-06
Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%)
Frame = -2
Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899
M P SP+ A A + P Y P+ ++ + +P +SP Y
Sbjct: 909 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 963
Query: 898 SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740
P+ + T+PS T PSY +PS + T+P+Y P +PT+ +PT P ++ P+S
Sbjct: 964 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1022
Query: 739 PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
P S + T +P+Y SPSY + P SPS
Sbjct: 1023 PSYSPTSPT----DSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1063
Score = 60.8 bits (146), Expect = 2e-06
Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + ++P P SPT +PT P P Y P++P S T
Sbjct: 1064 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1123
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776
+PS SP Y PS S +P TP+ Y +P+ + T+P+Y P +P S
Sbjct: 1124 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1182
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+P P + SP S S +P+Y SP Y + P SP+
Sbjct: 1183 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1238
>XP_641735.1 RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
P35084.2 RecName: Full=DNA-directed RNA polymerase II
subunit rpb1; Short=RNA polymerase II subunit B1;
AltName: Full=DNA-directed RNA polymerase III subunit A
EAL67745.1 RNA polymerase II largest subunit
[Dictyostelium discoideum AX4]
Length = 1727
Score = 77.0 bits (188), Expect = 2e-11
Identities = 57/175 (32%), Positives = 78/175 (44%), Gaps = 3/175 (1%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929
SPT + T+P P SPT +PT P Y P++P S T
Sbjct: 1550 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPFYSPTSPS 1608
Query: 928 TAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTMPP 758
+P+ SP Y PS S T+PS T+PSY +PS + T+PSY P +P+ S +P+ P
Sbjct: 1609 YSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1667
Query: 757 FNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSDFPF 593
+ SP T ++P+Y SPSY S P+ SPS F
Sbjct: 1668 TSPSYSPTSPSYSPTSPSYSP--------SSPSYSPSSPSYSPSSPSYSPSSPTF 1714
>BAO20842.1 RNA polymerase II largest subunit, partial [Daphnia pulicaria]
Length = 1764
Score = 77.0 bits (188), Expect = 2e-11
Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%)
Frame = -2
Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941
MSP + +P M P ++ SP A T+P+M P Y P++P S T
Sbjct: 1549 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1606
Query: 940 XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770
+P+ SP Y PS S T+P+ T+PSY +PS + T+PSY P +PT S +P
Sbjct: 1607 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1665
Query: 769 TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+ P + PS S S ++P+Y SPSY + P+ SPS
Sbjct: 1666 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1719
Score = 73.6 bits (179), Expect = 2e-10
Identities = 55/177 (31%), Positives = 77/177 (43%), Gaps = 9/177 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP A T+P M P SPT +PT P P Y P++P S T
Sbjct: 1566 SPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSY 1625
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
+P+ SP Y PS S T+PS T+P+Y +PS + ++PSY P +P+ S
Sbjct: 1626 SPTSPTYSPT-SPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPT 1684
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+P+ P PS S S ++P Y +SP+Y S P SP+
Sbjct: 1685 SPSYSP-TSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPT 1740
Score = 73.2 bits (178), Expect = 3e-10
Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP + T+P P SPT +PT P P Y P++P S T
Sbjct: 1594 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1653
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
+PS SP Y PS S T+PS T+PSY +PS + ++PSY P +P+ S
Sbjct: 1654 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1710
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608
PT P ++ PSSPQ S +PAY SP Y + P+ SP
Sbjct: 1711 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1746
Score = 62.0 bits (149), Expect = 1e-06
Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%)
Frame = -2
Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899
M P SP+ A A + P Y P+ ++ + +P +SP Y
Sbjct: 1509 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 1563
Query: 898 SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740
P+ + T+PS T PSY +PS + T+P+Y P +PT+ +PT P ++ P+S
Sbjct: 1564 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1622
Query: 739 PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
P S + T +P+Y SPSY + P SPS
Sbjct: 1623 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1663
>JAN50643.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna]
Length = 1865
Score = 77.0 bits (188), Expect = 2e-11
Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%)
Frame = -2
Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941
MSP + +P M P ++ SP A T+P+M P Y P++P S T
Sbjct: 1541 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1598
Query: 940 XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770
+P+ SP Y PS S T+P+ T+PSY +PS + T+PSY P +PT S +P
Sbjct: 1599 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1657
Query: 769 TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+ P + PS S S ++P+Y SPSY + P+ SPS
Sbjct: 1658 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1711
Score = 73.2 bits (178), Expect = 3e-10
Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP + T+P P SPT +PT P P Y P++P S T
Sbjct: 1586 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1645
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
+PS SP Y PS S T+PS T+PSY +PS + ++PSY P +P+ S
Sbjct: 1646 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1702
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608
PT P ++ PSSPQ S +PAY SP Y + P+ SP
Sbjct: 1703 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1738
Score = 68.9 bits (167), Expect = 6e-09
Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SPT + T+P P SPT +PT P P Y PS+P S T
Sbjct: 1621 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1680
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800
+PS SP Y PS S T+PS +PS Y +P + T+PSY P
Sbjct: 1681 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1739
Query: 799 ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629
TP + +PT P ++ P+SP S S +P Y SPSY
Sbjct: 1740 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1794
Query: 628 SVPAMSPS 605
+ PA SPS
Sbjct: 1795 ASPAYSPS 1802
Score = 62.0 bits (149), Expect = 1e-06
Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%)
Frame = -2
Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899
M P SP+ A A + P Y P+ ++ + +P +SP Y
Sbjct: 1501 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 1555
Query: 898 SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740
P+ + T+PS T PSY +PS + T+P+Y P +PT+ +PT P ++ P+S
Sbjct: 1556 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1614
Query: 739 PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
P S + T +P+Y SPSY + P SPS
Sbjct: 1615 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1655
Score = 60.8 bits (146), Expect = 2e-06
Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + ++P P SPT +PT P P Y P++P S T
Sbjct: 1656 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1715
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776
+PS SP Y PS S +P TP+ Y +P+ + T+P+Y P +P S
Sbjct: 1716 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1774
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+P P + SP S S +P+Y SP Y + P SP+
Sbjct: 1775 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1830
>JAN64786.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna]
Length = 1895
Score = 77.0 bits (188), Expect = 2e-11
Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%)
Frame = -2
Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941
MSP + +P M P ++ SP A T+P+M P Y P++P S T
Sbjct: 1571 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1628
Query: 940 XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770
+P+ SP Y PS S T+P+ T+PSY +PS + T+PSY P +PT S +P
Sbjct: 1629 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1687
Query: 769 TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+ P + PS S S ++P+Y SPSY + P+ SPS
Sbjct: 1688 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1741
Score = 73.2 bits (178), Expect = 3e-10
Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP + T+P P SPT +PT P P Y P++P S T
Sbjct: 1616 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1675
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
+PS SP Y PS S T+PS T+PSY +PS + ++PSY P +P+ S
Sbjct: 1676 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1732
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608
PT P ++ PSSPQ S +PAY SP Y + P+ SP
Sbjct: 1733 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1768
Score = 68.9 bits (167), Expect = 6e-09
Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SPT + T+P P SPT +PT P P Y PS+P S T
Sbjct: 1651 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1710
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800
+PS SP Y PS S T+PS +PS Y +P + T+PSY P
Sbjct: 1711 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1769
Query: 799 ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629
TP + +PT P ++ P+SP S S +P Y SPSY
Sbjct: 1770 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1824
Query: 628 SVPAMSPS 605
+ PA SPS
Sbjct: 1825 ASPAYSPS 1832
Score = 62.0 bits (149), Expect = 1e-06
Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%)
Frame = -2
Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899
M P SP+ A A + P Y P+ ++ + +P +SP Y
Sbjct: 1531 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 1585
Query: 898 SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740
P+ + T+PS T PSY +PS + T+P+Y P +PT+ +PT P ++ P+S
Sbjct: 1586 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1644
Query: 739 PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
P S + T +P+Y SPSY + P SPS
Sbjct: 1645 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1685
Score = 60.8 bits (146), Expect = 2e-06
Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + ++P P SPT +PT P P Y P++P S T
Sbjct: 1686 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1745
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776
+PS SP Y PS S +P TP+ Y +P+ + T+P+Y P +P S
Sbjct: 1746 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1804
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+P P + SP S S +P+Y SP Y + P SP+
Sbjct: 1805 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1860
>JAN53042.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna]
JAN53043.1 DNA-directed RNA polymerase II subunit RPB1
[Daphnia magna]
Length = 1895
Score = 77.0 bits (188), Expect = 2e-11
Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%)
Frame = -2
Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941
MSP + +P M P ++ SP A T+P+M P Y P++P S T
Sbjct: 1571 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1628
Query: 940 XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770
+P+ SP Y PS S T+P+ T+PSY +PS + T+PSY P +PT S +P
Sbjct: 1629 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1687
Query: 769 TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+ P + PS S S ++P+Y SPSY + P+ SPS
Sbjct: 1688 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1741
Score = 73.2 bits (178), Expect = 3e-10
Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP + T+P P SPT +PT P P Y P++P S T
Sbjct: 1616 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1675
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
+PS SP Y PS S T+PS T+PSY +PS + ++PSY P +P+ S
Sbjct: 1676 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1732
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608
PT P ++ PSSPQ S +PAY SP Y + P+ SP
Sbjct: 1733 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1768
Score = 68.9 bits (167), Expect = 6e-09
Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SPT + T+P P SPT +PT P P Y PS+P S T
Sbjct: 1651 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1710
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800
+PS SP Y PS S T+PS +PS Y +P + T+PSY P
Sbjct: 1711 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1769
Query: 799 ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629
TP + +PT P ++ P+SP S S +P Y SPSY
Sbjct: 1770 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1824
Query: 628 SVPAMSPS 605
+ PA SPS
Sbjct: 1825 ASPAYSPS 1832
Score = 61.2 bits (147), Expect = 2e-06
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 7/157 (4%)
Frame = -2
Query: 1054 SPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYKSGLPSKSN 875
SP+ A A + P Y P+ ++ + +P +SP Y P+ +
Sbjct: 1539 SPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYSPSSPAYAP 1593
Query: 874 TAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSSPQKSMSQE 716
T+PS T PSY +PS + T+P+Y P +PT+ +PT P ++ P+SP S +
Sbjct: 1594 TSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTSPSYSPTSP 1652
Query: 715 TXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
T +P+Y SPSY + P SPS
Sbjct: 1653 T----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1685
Score = 60.8 bits (146), Expect = 2e-06
Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + ++P P SPT +PT P P Y P++P S T
Sbjct: 1686 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1745
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776
+PS SP Y PS S +P TP+ Y +P+ + T+P+Y P +P S
Sbjct: 1746 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1804
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+P P + SP S S +P+Y SP Y + P SP+
Sbjct: 1805 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1860
>JAN42539.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna]
JAN44046.1 DNA-directed RNA polymerase II subunit RPB1
[Daphnia magna] JAN45443.1 DNA-directed RNA polymerase II
subunit RPB1 [Daphnia magna] JAN46894.1 DNA-directed RNA
polymerase II subunit RPB1 [Daphnia magna] JAN46895.1
DNA-directed RNA polymerase II subunit RPB1 [Daphnia
magna] JAN48591.1 DNA-directed RNA polymerase II subunit
RPB1 [Daphnia magna] JAN48592.1 DNA-directed RNA
polymerase II subunit RPB1 [Daphnia magna] JAN62288.1
DNA-directed RNA polymerase II subunit RPB1 [Daphnia
magna]
Length = 1895
Score = 77.0 bits (188), Expect = 2e-11
Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%)
Frame = -2
Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941
MSP + +P M P ++ SP A T+P+M P Y P++P S T
Sbjct: 1571 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1628
Query: 940 XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770
+P+ SP Y PS S T+P+ T+PSY +PS + T+PSY P +PT S +P
Sbjct: 1629 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1687
Query: 769 TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+ P + PS S S ++P+Y SPSY + P+ SPS
Sbjct: 1688 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1741
Score = 73.2 bits (178), Expect = 3e-10
Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP + T+P P SPT +PT P P Y P++P S T
Sbjct: 1616 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1675
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
+PS SP Y PS S T+PS T+PSY +PS + ++PSY P +P+ S
Sbjct: 1676 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1732
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608
PT P ++ PSSPQ S +PAY SP Y + P+ SP
Sbjct: 1733 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1768
Score = 68.9 bits (167), Expect = 6e-09
Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SPT + T+P P SPT +PT P P Y PS+P S T
Sbjct: 1651 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1710
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800
+PS SP Y PS S T+PS +PS Y +P + T+PSY P
Sbjct: 1711 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1769
Query: 799 ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629
TP + +PT P ++ P+SP S S +P Y SPSY
Sbjct: 1770 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1824
Query: 628 SVPAMSPS 605
+ PA SPS
Sbjct: 1825 ASPAYSPS 1832
Score = 62.0 bits (149), Expect = 1e-06
Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%)
Frame = -2
Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899
M P SP+ A A + P Y P+ ++ + +P +SP Y
Sbjct: 1531 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 1585
Query: 898 SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740
P+ + T+PS T PSY +PS + T+P+Y P +PT+ +PT P ++ P+S
Sbjct: 1586 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1644
Query: 739 PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
P S + T +P+Y SPSY + P SPS
Sbjct: 1645 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1685
Score = 60.8 bits (146), Expect = 2e-06
Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + ++P P SPT +PT P P Y P++P S T
Sbjct: 1686 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1745
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776
+PS SP Y PS S +P TP+ Y +P+ + T+P+Y P +P S
Sbjct: 1746 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1804
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+P P + SP S S +P+Y SP Y + P SP+
Sbjct: 1805 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1860
>EFX75312.1 hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex]
Length = 1895
Score = 77.0 bits (188), Expect = 2e-11
Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%)
Frame = -2
Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941
MSP + +P M P ++ SP A T+P+M P Y P++P S T
Sbjct: 1571 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1628
Query: 940 XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770
+P+ SP Y PS S T+P+ T+PSY +PS + T+PSY P +PT S +P
Sbjct: 1629 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1687
Query: 769 TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+ P + PS S S ++P+Y SPSY + P+ SPS
Sbjct: 1688 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1741
Score = 73.2 bits (178), Expect = 3e-10
Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP + T+P P SPT +PT P P Y P++P S T
Sbjct: 1616 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1675
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
+PS SP Y PS S T+PS T+PSY +PS + ++PSY P +P+ S
Sbjct: 1676 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1732
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608
PT P ++ PSSPQ S +PAY SP Y + P+ SP
Sbjct: 1733 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1768
Score = 68.9 bits (167), Expect = 6e-09
Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SPT + T+P P SPT +PT P P Y PS+P S T
Sbjct: 1651 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1710
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800
+PS SP Y PS S T+PS +PS Y +P + T+PSY P
Sbjct: 1711 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1769
Query: 799 ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629
TP + +PT P ++ P+SP S S +P Y SPSY
Sbjct: 1770 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1824
Query: 628 SVPAMSPS 605
+ PA SPS
Sbjct: 1825 ASPAYSPS 1832
Score = 62.0 bits (149), Expect = 1e-06
Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%)
Frame = -2
Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899
M P SP+ A A + P Y P+ ++ + +P +SP Y
Sbjct: 1531 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 1585
Query: 898 SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740
P+ + T+PS T PSY +PS + T+P+Y P +PT+ +PT P ++ P+S
Sbjct: 1586 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1644
Query: 739 PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
P S + T +P+Y SPSY + P SPS
Sbjct: 1645 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1685
Score = 60.8 bits (146), Expect = 2e-06
Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + ++P P SPT +PT P P Y P++P S T
Sbjct: 1686 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1745
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776
+PS SP Y PS S +P TP+ Y +P+ + T+P+Y P +P S
Sbjct: 1746 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1804
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+P P + SP S S +P+Y SP Y + P SP+
Sbjct: 1805 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1860
>XP_014221062.1 PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Trichogramma pretiosum]
Length = 1920
Score = 77.0 bits (188), Expect = 2e-11
Identities = 57/180 (31%), Positives = 77/180 (42%), Gaps = 12/180 (6%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + T+P P SPT +PT P P Y P++PI S T
Sbjct: 1664 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPIYSPTSPSYSP----- 1718
Query: 946 XXXXSVTAPS---VSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTA 785
T+PS SP Y PS S T+PS T+PSY +PS + T+PSY P +P
Sbjct: 1719 ------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 1772
Query: 784 SVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+ +P+ P + SP T +P Y SPSY + P+ SPS
Sbjct: 1773 TPASPSYSPSSPNYSPTSPSYSPTSPSFAGGTPPRYTPTSPTYSPTSPSYSPTSPSYSPS 1832
Score = 71.6 bits (174), Expect = 9e-10
Identities = 56/181 (30%), Positives = 82/181 (45%), Gaps = 9/181 (4%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + T+P P SPT +PT P P Y P++P S T
Sbjct: 1636 SPSYSPTSPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1695
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
+P+ SP+Y PS S T+PS T+PSY +PS + T+PSY P +P+ S
Sbjct: 1696 SPTSPSYSPT-SPIYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-- 1752
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPSDFP 596
PT P ++ P+SP S + +P+Y SP+Y + P+ SP+
Sbjct: 1753 -PTSPSYS-PTSPSYSPTSPNYTPA-----------SPSYSPSSPNYSPTSPSYSPTSPS 1799
Query: 595 F 593
F
Sbjct: 1800 F 1800
Score = 66.6 bits (161), Expect = 4e-08
Identities = 53/178 (29%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSV 929
SP+ + T+P P SPT + +PT P Y P++P S T
Sbjct: 1685 SPSYSPTSPSYSPTSPSYSPTSPIYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1743
Query: 928 TAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTPTM-- 764
+P+ SP Y PS S T+PS T+P+Y +PS + ++P+Y P +P+ S +P+
Sbjct: 1744 YSPT-SPSYSPTSPSYSPTSPSYSPTSPNYTPASPSYSPSSPNYSPTSPSYSPTSPSFAG 1802
Query: 763 --PPFNKPSSPQ---KSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
PP P+SP S S A + Y SP+Y + P SPS
Sbjct: 1803 GTPPRYTPTSPTYSPTSPSYSPTSPSYSPSSPQHSAISTNYSPSSPNYSPTSPTYSPS 1860
Score = 66.2 bits (160), Expect = 5e-08
Identities = 57/183 (31%), Positives = 76/183 (41%), Gaps = 16/183 (8%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + T+P P SPT +PT P P Y P++P S T
Sbjct: 1713 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 1772
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS----TTPSYKSVAPSKAVTAPSYKPLTPTASV 779
+PS SP Y PS S T+PS T P Y +P+ + T+PSY P +P+ S
Sbjct: 1773 TPASPSYSPS-SPNYSPTSPSYSPTSPSFAGGTPPRYTPTSPTYSPTSPSYSPTSPSYSP 1831
Query: 778 MTPTMPPFN---KPSSPQKSMSQETXXXXXXXXXXXXPANAPA---YVTKSPSYPSSVPA 617
+P + PSSP S + T P +P Y SPSY + PA
Sbjct: 1832 SSPQHSAISTNYSPSSPNYSPTSPTYSPSSTRYSPTSPTYSPPSFNYSPTSPSYSPTSPA 1891
Query: 616 MSP 608
SP
Sbjct: 1892 YSP 1894
Score = 65.1 bits (157), Expect = 1e-07
Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Frame = -2
Query: 1114 YMSP--TKAVTAPIMPPFHNY-MSPTKAVTAP---TMPPLYKPSAPIKSFTXXXXXXXXX 953
YMSP T +P+ P ++Y SP++ ++ T P Y PS+P T
Sbjct: 1571 YMSPAGTSPRYSPMSPSGYSYPASPSRTPSSDHYSTASPNYSPSSPKYVPTSPSYSPTSP 1630
Query: 952 XXXXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTAS 782
+P+ SP Y PS S T+PS T+PSY +PS + T+PSY P +P+
Sbjct: 1631 SYSPTSPSYSPT-SPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-- 1687
Query: 781 VMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+PT P ++ P+SP S + +P+Y SPSY + P+ SP+
Sbjct: 1688 -YSPTSPSYS-PTSPSYSPTS-----------PIYSPTSPSYSPTSPSYSPTSPSYSPT 1733
>JAN40900.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna]
Length = 1930
Score = 77.0 bits (188), Expect = 2e-11
Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%)
Frame = -2
Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941
MSP + +P M P ++ SP A T+P+M P Y P++P S T
Sbjct: 1606 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1663
Query: 940 XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770
+P+ SP Y PS S T+P+ T+PSY +PS + T+PSY P +PT S +P
Sbjct: 1664 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1722
Query: 769 TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+ P + PS S S ++P+Y SPSY + P+ SPS
Sbjct: 1723 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1776
Score = 73.2 bits (178), Expect = 3e-10
Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP + T+P P SPT +PT P P Y P++P S T
Sbjct: 1651 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1710
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
+PS SP Y PS S T+PS T+PSY +PS + ++PSY P +P+ S
Sbjct: 1711 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1767
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608
PT P ++ PSSPQ S +PAY SP Y + P+ SP
Sbjct: 1768 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1803
Score = 68.9 bits (167), Expect = 6e-09
Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SPT + T+P P SPT +PT P P Y PS+P S T
Sbjct: 1686 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1745
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800
+PS SP Y PS S T+PS +PS Y +P + T+PSY P
Sbjct: 1746 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1804
Query: 799 ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629
TP + +PT P ++ P+SP S S +P Y SPSY
Sbjct: 1805 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1859
Query: 628 SVPAMSPS 605
+ PA SPS
Sbjct: 1860 ASPAYSPS 1867
Score = 62.0 bits (149), Expect = 1e-06
Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%)
Frame = -2
Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899
M P SP+ A A + P Y P+ ++ + +P +SP Y
Sbjct: 1566 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 1620
Query: 898 SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740
P+ + T+PS T PSY +PS + T+P+Y P +PT+ +PT P ++ P+S
Sbjct: 1621 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1679
Query: 739 PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
P S + T +P+Y SPSY + P SPS
Sbjct: 1680 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1720
Score = 60.8 bits (146), Expect = 2e-06
Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + ++P P SPT +PT P P Y P++P S T
Sbjct: 1721 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1780
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776
+PS SP Y PS S +P TP+ Y +P+ + T+P+Y P +P S
Sbjct: 1781 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1839
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+P P + SP S S +P+Y SP Y + P SP+
Sbjct: 1840 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1895
>JAN74022.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna]
Length = 1936
Score = 77.0 bits (188), Expect = 2e-11
Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 6/175 (3%)
Frame = -2
Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941
MSP + +P M P ++ SP A T+P+M P Y P++P S T
Sbjct: 1612 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1669
Query: 940 XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770
+P+ SP Y PS S T+P+ T+PSY +PS + T+PSY P +PT S +P
Sbjct: 1670 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1728
Query: 769 TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+ P + PS S S ++P+Y SPSY + P+ SPS
Sbjct: 1729 SYSP-SSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1782
Score = 73.2 bits (178), Expect = 3e-10
Identities = 58/176 (32%), Positives = 77/176 (43%), Gaps = 9/176 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP + T+P P SPT +PT P P Y P++P S T
Sbjct: 1657 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1716
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
+PS SP Y PS S T+PS T+PSY +PS + ++PSY P +P+ S
Sbjct: 1717 SPTSPTYSPS-SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1773
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608
PT P ++ PSSPQ S +PAY SP Y + P+ SP
Sbjct: 1774 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYSPTSPSYSP 1809
Score = 68.9 bits (167), Expect = 6e-09
Identities = 60/188 (31%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SPT + T+P P SPT +PT P P Y PS+P S T
Sbjct: 1692 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSPSYSPSSPSYSPTSPSYSPTSPSY 1751
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS----------YKSVAPSKAVTAPSYKP- 800
+PS SP Y PS S T+PS +PS Y +P + T+PSY P
Sbjct: 1752 SPTSPSYSPS-SPSYTPASPSYSPTSPSYSPSSPQYSPRSPAYSPSSPKYSPTSPSYSPG 1810
Query: 799 ---LTPTASVMTPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPS 629
TP + +PT P ++ P+SP S S +P Y SPSY
Sbjct: 1811 SPQYTPASPKYSPTSPTYS-PTSPAYSPSSPKYSPTSPRYSPA----SPKYSPTSPSYSP 1865
Query: 628 SVPAMSPS 605
+ PA SPS
Sbjct: 1866 ASPAYSPS 1873
Score = 62.0 bits (149), Expect = 1e-06
Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%)
Frame = -2
Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899
M P SP+ A A + P Y P+ ++ + +P +SP Y
Sbjct: 1572 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 1626
Query: 898 SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740
P+ + T+PS T PSY +PS + T+P+Y P +PT+ +PT P ++ P+S
Sbjct: 1627 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1685
Query: 739 PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
P S + T +P+Y SPSY + P SPS
Sbjct: 1686 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1726
Score = 60.8 bits (146), Expect = 2e-06
Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 9/177 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ + ++P P SPT +PT P P Y P++P S T
Sbjct: 1727 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1786
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPSTTPS---YKSVAPSKAVTAPSYKPLTPTASVM 776
+PS SP Y PS S +P TP+ Y +P+ + T+P+Y P +P S
Sbjct: 1787 SPRSPAYSPS-SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPT 1845
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+P P + SP S S +P+Y SP Y + P SP+
Sbjct: 1846 SPRYSPASPKYSPT-SPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPA 1901
>JAN55944.1 DNA-directed RNA polymerase II subunit RPB1 [Daphnia magna]
Length = 1273
Score = 76.6 bits (187), Expect = 2e-11
Identities = 57/175 (32%), Positives = 81/175 (46%), Gaps = 6/175 (3%)
Frame = -2
Query: 1111 MSPTKAVTAPIMPPFHNYMSPTKAVTAPTMPPL---YKPSAPIKSFTXXXXXXXXXXXXX 941
MSP + +P M P ++ SP A T+P+M P Y P++P S T
Sbjct: 949 MSPY--IPSPGMSPSYSPSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSP 1006
Query: 940 XXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVMTP 770
+P+ SP Y PS S T+P+ T+PSY +PS + T+PSY P +PT S +P
Sbjct: 1007 TSPSYSPT-SPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPSSP 1065
Query: 769 TMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
+ P PS S S ++P+Y SPSY + P+ SPS
Sbjct: 1066 SCKP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPS 1119
Score = 73.9 bits (180), Expect = 1e-10
Identities = 59/176 (33%), Positives = 78/176 (44%), Gaps = 9/176 (5%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP + T+P P SPT +PT P P Y P++P S T
Sbjct: 994 SPNYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPTSPSYSPTSPSYSPTSPSY 1053
Query: 946 XXXXSVTAPSVSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLTPTASVM 776
+PS SP K PS S T+PS T+PSY +PS + ++PSY P +P+ S
Sbjct: 1054 SPTSPTYSPS-SPSCKPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYS-- 1110
Query: 775 TPTMPPFNKPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSP 608
PT P ++ PSSPQ S +PAY SP YP + P+ SP
Sbjct: 1111 -PTSPSYS-PSSPQYS------------------PRSPAYSPSSPKYPPTSPSYSP 1146
Score = 62.0 bits (149), Expect = 1e-06
Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 7/165 (4%)
Frame = -2
Query: 1078 MPPFHNYMSPTKAVTAPTMPPLYKPSAPIKSFTXXXXXXXXXXXXXXXSVTAPSVSPMYK 899
M P SP+ A A + P Y P+ ++ + +P +SP Y
Sbjct: 909 MTPGGPAFSPSVASDASGLSPGYSPA-----WSPQPGSPGSPGPGMSPYIPSPGMSPSYS 963
Query: 898 SGLPSKSNTAPSTT---PSYKSVAPSKAVTAPSYKP----LTPTASVMTPTMPPFNKPSS 740
P+ + T+PS T PSY +PS + T+P+Y P +PT+ +PT P ++ P+S
Sbjct: 964 PSSPAYAPTSPSMTPSSPSYSPTSPSYSPTSPNYSPTSPGYSPTSPSYSPTSPSYS-PTS 1022
Query: 739 PQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSVPAMSPS 605
P S + T +P+Y SPSY + P SPS
Sbjct: 1023 PSYSPTSPT----YSPTSPSYSPTSPSYSPTSPSYSPTSPTYSPS 1063
Score = 59.3 bits (142), Expect = 7e-06
Identities = 49/186 (26%), Positives = 72/186 (38%), Gaps = 18/186 (9%)
Frame = -2
Query: 1108 SPTKAVTAPIMPPFHNYMSPTKAVTAPTMP------PLYKPSAPIKSFTXXXXXXXXXXX 947
SP+ T+P P SPT +PT P P Y P++P S T
Sbjct: 1064 SPSCKPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYTPASPSYSPTSPSYSPSSPQY 1123
Query: 946 XXXXSVTAPS------VSPMYKSGLPSKSNTAPS---TTPSYKSVAPSKAVTAPSYKPLT 794
+PS SP Y G P + +P T+P+Y +P+ + ++P Y P +
Sbjct: 1124 SPRSPAYSPSSPKYPPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPTS 1183
Query: 793 PTASVMTPTMPPFN---KPSSPQKSMSQETXXXXXXXXXXXXPANAPAYVTKSPSYPSSV 623
P S +P P + P+SP S S +P+Y SP Y +
Sbjct: 1184 PRYSPASPKYSPTSPSYSPASPAYSPSSPN-----------YSPTSPSYSPASPKYSPTS 1232
Query: 622 PAMSPS 605
P SP+
Sbjct: 1233 PTYSPA 1238